BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032789
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 225 bits (573), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA++GNKNINAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1 MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
FEIWDTAGQERYHSLAPMYYRGAAAAIIV+DITNQASFERAKKWVQELQAQG
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQG 112
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 109/112 (97%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA GNK+INAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
FEIWDTAGQERYHSLAPMYYRGAAAAIIV+D+TNQASFERAKKWVQELQAQG
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG 112
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/112 (85%), Positives = 105/112 (93%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA++ + N+NAKLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS TLAVN+ATVK
Sbjct: 1 MASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+ SF RAKKWVQELQ QG
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQG 112
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/112 (83%), Positives = 103/112 (91%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA+ + N+NAKLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS T++VN+ATVK
Sbjct: 1 MASRRHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+ S RAKKWVQELQ QG
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQG 112
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 92/110 (83%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKF
Sbjct: 12 PNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKF 71
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
EIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 72 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 121
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 92/110 (83%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKF
Sbjct: 12 PNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKF 71
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
EIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 72 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 121
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 92/110 (83%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKF
Sbjct: 12 PNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKF 71
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
EIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 72 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 121
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 92/110 (83%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKF
Sbjct: 12 PNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKF 71
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
EIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 72 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 121
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 92/110 (83%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKF
Sbjct: 12 PNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKF 71
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
EIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 72 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 121
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 92/110 (83%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKF
Sbjct: 12 PNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKF 71
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
EIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 72 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 121
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/107 (75%), Positives = 90/107 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 122
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/107 (75%), Positives = 90/107 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 122
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/107 (75%), Positives = 90/107 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 122
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/107 (75%), Positives = 90/107 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 122
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/107 (75%), Positives = 90/107 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 122
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/107 (75%), Positives = 90/107 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQ 122
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 88/101 (87%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEIWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
YHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQA 122
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 88/101 (87%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEIWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
YHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQA 122
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 88/101 (87%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEIWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
YHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQA 122
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 88/101 (87%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEIWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
YHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQA 122
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 78/107 (72%), Positives = 91/107 (85%)
Query: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
NK KLVLLG+ GKSSLVLRFV+G F+++QESTIGAAF +QT+ +ND TVKFEIWD
Sbjct: 5 NKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIWD 64
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
TAGQERYH+LAPMYYRGA AAI+VYDI ++ SFERA KWV+ELQ QG
Sbjct: 65 TAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQG 111
>sp|P36586|YPT5_SCHPO GTP-binding protein ypt5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt5 PE=1 SV=1
Length = 211
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 88/115 (76%), Gaps = 4/115 (3%)
Query: 2 ATTGNKN---INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT 58
+ T KN IN KLVLLGD GKSSLVLRFVK QF +++ESTIGAAF +QTL +++ T
Sbjct: 3 SNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENT 62
Query: 59 -VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
VK EIWDTAGQERY SLAPMYYR A AI+VYDIT AS E+AK W++ELQ Q
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQA 117
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 86/107 (80%), Gaps = 1/107 (0%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWD 65
KN+ KLVLLGD G GKS +VLRFV+GQF + T+GA+F SQT+A+ D+T VKFEIWD
Sbjct: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGASFLSQTIALQDSTTVKFEIWD 89
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
TAGQERY +LAP+YYRGA A+IVYDIT+ SF++A+ WV+ELQ G
Sbjct: 90 TAGQERYSALAPLYYRGAGVAVIVYDITSPESFKKAQYWVKELQKHG 136
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/100 (63%), Positives = 77/100 (77%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSS+VLRFV F E +E TIGAAF +Q + +N+ TVKFEIWDTAGQER
Sbjct: 9 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 68
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
+ SLAPMYYR A AA++VYD+T SF +A+ WV+EL Q
Sbjct: 69 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ 108
>sp|P36018|YPT52_YEAST GTP-binding protein YPT52 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT52 PE=1 SV=1
Length = 234
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 78/106 (73%), Gaps = 8/106 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--------DATVKFEI 63
KLVLLGD GKSS+V RFVK F E +ESTIGAAF SQ++ ++ D +KFEI
Sbjct: 5 KLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEI 64
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
WDTAGQERY SLAPMYYR A AA++VYDIT + S ++A+ WV EL+
Sbjct: 65 WDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELK 110
>sp|Q6GQP4|RAB31_RAT Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=1 SV=2
Length = 194
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 74/101 (73%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
+HSLAPMYYRG+AAA+IVYDIT Q SF KKWV+EL+ G
Sbjct: 67 FHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHG 107
>sp|Q921E2|RAB31_MOUSE Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1
Length = 194
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 74/101 (73%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
+HSLAPMYYRG+AAA+IVYDIT Q SF KKWV+EL+ G
Sbjct: 67 FHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHG 107
>sp|Q13636|RAB31_HUMAN Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1
Length = 194
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 74/101 (73%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
+HSLAPMYYRG+AAA+IVYDIT Q SF KKWV+EL+ G
Sbjct: 67 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG 107
>sp|P36019|YPT53_YEAST GTP-binding protein YPT53 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT53 PE=1 SV=1
Length = 220
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VLLG+ GKSS+VLRFV F E +E TIGAAF ++ + + +KFEIWDTAGQER
Sbjct: 14 KVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEIWDTAGQER 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIH 114
+ LAPMYYR A AA++V+D+TN+ SF +A+ WV+EL + H
Sbjct: 74 FAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGH 116
>sp|Q54RX9|RAB5B_DICDI Putative ras-related protein Rab-5B OS=Dictyostelium discoideum
GN=rab5B PE=5 SV=1
Length = 214
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 74/98 (75%), Gaps = 1/98 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG++ GK+ + R V+ +F +STIGAAF +++ V++ +K EIWDTAGQER
Sbjct: 51 KLVLLGEMNTGKTCISSRLVRNEFGP-TDSTIGAAFLVKSMVVDNINIKLEIWDTAGQER 109
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y SL PMYYRGAAAA++VYDIT + +FE K+WV ELQ
Sbjct: 110 YRSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVSELQ 147
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 72/101 (71%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHG 107
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 72/101 (71%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG 107
>sp|P51154|RB22A_CANFA Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1
Length = 194
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 71/101 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQE
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQEA 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHG 107
>sp|P41925|RYL2_YARLI Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL2 PE=3 SV=2
Length = 209
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 75/103 (72%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
++++AK+VLLG G GK+ V R+V +F Q STIGA+F + + VND TV+ +IWDT
Sbjct: 2 ESMDAKIVLLGAQGVGKTCFVTRYVNNKFQAGQASTIGASFSRKRVVVNDTTVRLQIWDT 61
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
AGQER+ S+AP+YYR A+ I+ YD+T++ASF+ W+ EL+
Sbjct: 62 AGQERFRSMAPIYYRSASCGILCYDVTSRASFDAMHLWLLELK 104
>sp|Q8WQ53|RAB21_GEOCY Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1
Length = 229
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 73/101 (72%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ AK+VLLG+ GK+SLVLR+ + +F + E T+ A+F + L + ++ IWDTAG
Sbjct: 15 VKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAG 74
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
QERYH+L P+YYR + AIIVYDIT++ SF +A+ W++EL+
Sbjct: 75 QERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELK 115
>sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1
Length = 218
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 72/98 (73%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GKS+L+ RF K +F +STIG F ++TL V+ VK +IWDTAGQER
Sbjct: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYD+T +A+FE A +W++EL+
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELR 112
>sp|Q39222|RAA1B_ARATH Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2
SV=1
Length = 216
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 71/98 (72%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF K +F +STIG F ++TL V+ VK +IWDTAGQER
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYD+T +A+FE +W++EL+
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELK 112
>sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1
Length = 217
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 71/98 (72%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GKS+L+ RF + +F +STIG F ++++ V+D VK +IWDTAGQER
Sbjct: 16 KLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQER 75
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYDIT +FE ++W++EL+
Sbjct: 76 YRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELR 113
>sp|Q969Q5|RAB24_HUMAN Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1
Length = 203
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 78/105 (74%), Gaps = 1/105 (0%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
+ ++ K+V+LG GK+SLV R+V +F + ++TIGAAF ++ ++V D TV IWD
Sbjct: 4 QRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWD 63
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
TAG ERY +++ +YYRGA AAI+ YD+T+ +SFERAK WV+EL++
Sbjct: 64 TAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRS 108
>sp|P35290|RAB24_MOUSE Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2
Length = 203
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 78/106 (73%), Gaps = 3/106 (2%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI--EFQESTIGAAFFSQTLAVNDATVKFEIW 64
+ ++ K+V+LG GK+SLV R+V +F+ +Q +TIGAAF ++ + V D TV IW
Sbjct: 4 QRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQ-NTIGAAFVAKVMCVGDRTVTLGIW 62
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
DTAG ERY +++ +YYRGA AAI+ YD+T+ +SFERAK WV+EL++
Sbjct: 63 DTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRS 108
>sp|Q9FK68|RAA1C_ARATH Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1
SV=1
Length = 216
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 71/98 (72%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF K +F +STIG F +++L V+D +K +IWDTAGQER
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYD+T ++FE + W++EL+
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELR 112
>sp|Q9SN35|RAA1D_ARATH Ras-related protein RABA1d OS=Arabidopsis thaliana GN=RABA1D PE=2
SV=1
Length = 214
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 72/98 (73%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F +++L VN+ +K +IWDTAGQER
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEKVIKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYD+T ++FE ++W++EL+
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELR 112
>sp|P28185|RAA1A_ARATH Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=1
SV=1
Length = 216
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 69/100 (69%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GKS+L+ RF K +F +STIG F ++T V VK +IWDTAGQER
Sbjct: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
Y ++ YYRGA A+++YD+T A+FE A +W++EL+
Sbjct: 75 YRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGH 114
>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ryh1 PE=1 SV=1
Length = 201
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 71/100 (71%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+SL+ RF+ QF ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
+ SL P Y R ++ AIIVYDITN SF +KW+++++A+
Sbjct: 73 FRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAE 112
>sp|O04486|RAA2A_ARATH Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2
SV=1
Length = 217
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 69/98 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++TL V TVK +IWDTAGQER
Sbjct: 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQER 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYD+T +FE +W++EL+
Sbjct: 74 YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 111
>sp|Q8MYF2|RABJ_DICDI Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3
SV=1
Length = 256
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 74/103 (71%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ +K+VLLG GK++L LR+V G F + STIGA+F ++T+ + +K+ IWD+AG
Sbjct: 8 MESKVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAG 67
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
Q+R+ SLA +YYRGA AI+V+DIT Q +F+ K WV+EL+A
Sbjct: 68 QDRFRSLATLYYRGACVAILVFDITQQKTFDIVKGWVEELKAN 110
>sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1
Length = 214
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 71/98 (72%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+++ RF + +F +STIG F ++TL V TVK +IWDTAGQER
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYDIT + +F+ ++W++EL+
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELR 111
>sp|Q9LNW1|RAA2B_ARATH Ras-related protein RABA2b OS=Arabidopsis thaliana GN=RABA2B PE=2
SV=2
Length = 214
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 70/98 (71%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+++ RF + +F +STIG F ++TL V TVK +IWDTAGQER
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYDIT + +FE +W++EL+
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELR 111
>sp|P17610|YPT3_SCHPO GTP-binding protein ypt3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt3 PE=1 SV=1
Length = 214
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 71/98 (72%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K VL+GD G GKS+L++RF + +F +STIG F ++ + +++ +K +IWDTAGQER
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A+IVYDIT Q+SF+ +W++EL+
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELR 109
>sp|Q9H0T7|RAB17_HUMAN Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2
Length = 212
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG GKSSL LR+VK F T+G AFF++ + V ++K EIWDTAGQE+
Sbjct: 21 KLVLLGSGSVGKSSLALRYVKNDFKSIL-PTVGCAFFTKVVDVGATSLKLEIWDTAGQEK 79
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
YHS+ +Y+RGA AA++VYDIT + SF +A++W+++L+ +
Sbjct: 80 YHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEE 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,385,091
Number of Sequences: 539616
Number of extensions: 1388731
Number of successful extensions: 9273
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 7759
Number of HSP's gapped (non-prelim): 1197
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)