Query 032789
Match_columns 133
No_of_seqs 104 out of 1046
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:59:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.6E-32 5.6E-37 181.0 12.6 120 5-124 4-124 (205)
2 KOG0079 GTP-binding protein H- 100.0 1.3E-29 2.9E-34 161.6 8.3 119 8-126 6-124 (198)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.3E-28 2.9E-33 163.2 12.8 121 3-123 15-137 (221)
4 KOG0098 GTPase Rab2, small G p 100.0 1.2E-28 2.5E-33 162.5 11.7 118 7-124 3-121 (216)
5 KOG0092 GTPase Rab5/YPT51 and 100.0 3.6E-28 7.9E-33 160.8 13.1 117 7-123 2-119 (200)
6 cd04121 Rab40 Rab40 subfamily. 100.0 9.7E-28 2.1E-32 162.6 13.7 119 7-125 3-121 (189)
7 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.5E-27 3.2E-32 160.9 14.1 118 7-125 2-120 (182)
8 KOG0078 GTP-binding protein SE 100.0 8.5E-28 1.8E-32 161.3 12.3 120 6-125 8-128 (207)
9 cd04131 Rnd Rnd subfamily. Th 100.0 3E-27 6.6E-32 158.8 14.3 115 10-125 1-116 (178)
10 cd04133 Rop_like Rop subfamily 100.0 6E-27 1.3E-31 157.1 14.4 114 11-125 2-116 (176)
11 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.1E-27 4.6E-32 159.2 11.8 122 5-126 9-131 (222)
12 KOG0080 GTPase Rab18, small G 99.9 6.7E-27 1.5E-31 151.0 13.0 120 6-125 7-128 (209)
13 cd04120 Rab12 Rab12 subfamily. 99.9 9.4E-27 2E-31 159.2 13.3 115 11-125 1-116 (202)
14 cd01875 RhoG RhoG subfamily. 99.9 1.6E-26 3.6E-31 156.8 14.0 116 9-125 2-118 (191)
15 PLN03071 GTP-binding nuclear p 99.9 2E-26 4.2E-31 159.5 14.5 120 6-125 9-128 (219)
16 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 4.5E-26 9.8E-31 158.6 14.1 119 6-125 9-128 (232)
17 cd01874 Cdc42 Cdc42 subfamily. 99.9 6.5E-26 1.4E-30 151.9 14.3 114 10-124 1-115 (175)
18 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 3.2E-26 7E-31 158.5 12.9 115 10-125 1-116 (222)
19 cd04128 Spg1 Spg1p. Spg1p (se 99.9 5.7E-26 1.2E-30 153.1 13.7 112 11-122 1-112 (182)
20 cd04122 Rab14 Rab14 subfamily. 99.9 9E-26 1.9E-30 149.6 13.1 114 10-123 2-116 (166)
21 PF00071 Ras: Ras family; Int 99.9 5.7E-26 1.2E-30 149.6 12.0 113 12-124 1-114 (162)
22 cd04110 Rab35 Rab35 subfamily. 99.9 1.1E-25 2.3E-30 153.6 13.6 116 8-123 4-119 (199)
23 cd04102 RabL3 RabL3 (Rab-like3 99.9 8E-26 1.7E-30 154.6 12.8 115 11-125 1-140 (202)
24 cd04124 RabL2 RabL2 subfamily. 99.9 1.8E-25 4E-30 147.6 13.9 115 11-125 1-115 (161)
25 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2.1E-25 4.6E-30 152.3 13.6 115 11-125 1-121 (201)
26 cd01867 Rab8_Rab10_Rab13_like 99.9 1.7E-25 3.8E-30 148.4 12.8 115 9-123 2-117 (167)
27 cd00877 Ran Ran (Ras-related n 99.9 4.7E-25 1E-29 146.5 14.3 114 11-124 1-114 (166)
28 KOG0093 GTPase Rab3, small G p 99.9 9.9E-26 2.1E-30 143.7 10.5 119 7-125 18-137 (193)
29 cd01865 Rab3 Rab3 subfamily. 99.9 3.1E-25 6.8E-30 146.9 13.3 113 11-123 2-115 (165)
30 cd01871 Rac1_like Rac1-like su 99.9 4.4E-25 9.5E-30 147.8 14.1 113 11-124 2-115 (174)
31 cd04117 Rab15 Rab15 subfamily. 99.9 4.1E-25 8.9E-30 146.0 13.4 114 11-124 1-115 (161)
32 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 4E-25 8.6E-30 147.4 13.3 112 12-123 2-115 (170)
33 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 4.4E-25 9.6E-30 146.1 13.1 114 10-123 2-116 (166)
34 cd04127 Rab27A Rab27a subfamil 99.9 3.7E-25 8.1E-30 148.2 12.9 114 9-122 3-128 (180)
35 KOG0394 Ras-related GTPase [Ge 99.9 1.1E-25 2.3E-30 148.2 9.8 118 7-124 6-128 (210)
36 cd04119 RJL RJL (RabJ-Like) su 99.9 4.5E-25 9.7E-30 145.6 12.8 114 11-124 1-120 (168)
37 cd04106 Rab23_lke Rab23-like s 99.9 5.4E-25 1.2E-29 144.9 12.9 114 11-124 1-116 (162)
38 cd01868 Rab11_like Rab11-like. 99.9 8.6E-25 1.9E-29 144.5 13.0 115 9-123 2-117 (165)
39 cd01864 Rab19 Rab19 subfamily. 99.9 8.9E-25 1.9E-29 144.6 13.0 115 9-123 2-117 (165)
40 cd04116 Rab9 Rab9 subfamily. 99.9 1.3E-24 2.9E-29 144.3 13.8 117 7-123 2-123 (170)
41 cd04113 Rab4 Rab4 subfamily. 99.9 1.2E-24 2.6E-29 143.2 13.1 113 11-123 1-114 (161)
42 cd04134 Rho3 Rho3 subfamily. 99.9 2E-24 4.4E-29 146.2 14.2 113 11-124 1-114 (189)
43 PLN00023 GTP-binding protein; 99.9 1.4E-24 3E-29 156.2 14.0 121 5-125 16-162 (334)
44 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.3E-24 2.8E-29 145.2 12.9 115 10-125 2-118 (172)
45 cd01866 Rab2 Rab2 subfamily. 99.9 1.6E-24 3.5E-29 143.9 13.3 115 9-123 3-118 (168)
46 cd04118 Rab24 Rab24 subfamily. 99.9 2.2E-24 4.7E-29 146.2 14.1 114 11-124 1-115 (193)
47 KOG0095 GTPase Rab30, small G 99.9 5E-25 1.1E-29 141.0 10.2 118 6-123 3-121 (213)
48 PLN03110 Rab GTPase; Provision 99.9 2.2E-24 4.9E-29 148.9 14.2 118 7-124 9-127 (216)
49 PTZ00369 Ras-like protein; Pro 99.9 1.5E-24 3.3E-29 146.8 13.0 115 8-123 3-119 (189)
50 cd04176 Rap2 Rap2 subgroup. T 99.9 1.8E-24 3.8E-29 142.7 13.0 114 10-124 1-116 (163)
51 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.2E-24 4.8E-29 143.5 13.5 115 10-124 2-119 (170)
52 cd04136 Rap_like Rap-like subf 99.9 1.7E-24 3.7E-29 142.5 12.7 113 10-123 1-115 (163)
53 smart00176 RAN Ran (Ras-relate 99.9 1.2E-24 2.7E-29 148.6 12.4 110 16-125 1-110 (200)
54 cd01861 Rab6 Rab6 subfamily. 99.9 2.1E-24 4.6E-29 141.9 12.9 114 11-124 1-115 (161)
55 cd04132 Rho4_like Rho4-like su 99.9 2.5E-24 5.4E-29 145.1 13.1 114 11-125 1-116 (187)
56 cd04125 RabA_like RabA-like su 99.9 3E-24 6.5E-29 145.1 13.4 113 11-123 1-114 (188)
57 cd04109 Rab28 Rab28 subfamily. 99.9 2.8E-24 6.1E-29 148.2 12.9 113 11-123 1-118 (215)
58 KOG0086 GTPase Rab4, small G p 99.9 8.1E-25 1.7E-29 140.5 9.1 118 6-123 5-123 (214)
59 cd01860 Rab5_related Rab5-rela 99.9 5.7E-24 1.2E-28 140.1 12.9 113 10-122 1-114 (163)
60 cd04175 Rap1 Rap1 subgroup. T 99.9 4.7E-24 1E-28 140.9 12.5 114 10-124 1-116 (164)
61 smart00175 RAB Rab subfamily o 99.9 7.5E-24 1.6E-28 139.5 13.0 114 11-124 1-115 (164)
62 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.4E-23 3.1E-28 140.0 14.4 113 11-124 1-114 (173)
63 cd04111 Rab39 Rab39 subfamily. 99.9 7E-24 1.5E-28 146.0 13.1 113 10-122 2-117 (211)
64 cd04101 RabL4 RabL4 (Rab-like4 99.9 7.1E-24 1.5E-28 139.9 12.7 114 11-124 1-117 (164)
65 smart00174 RHO Rho (Ras homolo 99.9 1.3E-23 2.7E-28 140.0 13.8 112 13-125 1-113 (174)
66 cd04112 Rab26 Rab26 subfamily. 99.9 9.2E-24 2E-28 143.2 12.8 114 11-124 1-116 (191)
67 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.1E-23 2.3E-28 138.3 12.7 113 10-123 1-115 (162)
68 KOG0393 Ras-related small GTPa 99.9 1.4E-24 3E-29 146.1 8.2 115 8-123 2-118 (198)
69 cd04144 Ras2 Ras2 subfamily. 99.9 6.4E-24 1.4E-28 143.8 11.3 111 12-123 1-115 (190)
70 cd01892 Miro2 Miro2 subfamily. 99.9 2.4E-23 5.2E-28 138.7 13.1 116 8-124 2-118 (169)
71 cd04140 ARHI_like ARHI subfami 99.9 2.3E-23 5E-28 137.9 12.8 113 11-124 2-118 (165)
72 PLN03108 Rab family protein; P 99.9 3.7E-23 8.1E-28 142.2 13.5 115 9-123 5-120 (210)
73 cd04143 Rhes_like Rhes_like su 99.9 2.1E-23 4.5E-28 146.7 12.2 112 11-123 1-122 (247)
74 cd04142 RRP22 RRP22 subfamily. 99.9 4.5E-23 9.8E-28 140.7 13.3 114 11-124 1-126 (198)
75 PTZ00132 GTP-binding nuclear p 99.9 6.3E-23 1.4E-27 141.4 14.1 119 5-123 4-122 (215)
76 cd01863 Rab18 Rab18 subfamily. 99.9 6.3E-23 1.4E-27 134.9 13.4 112 11-122 1-114 (161)
77 cd01862 Rab7 Rab7 subfamily. 99.9 4.8E-23 1E-27 136.6 12.9 112 11-122 1-117 (172)
78 cd01870 RhoA_like RhoA-like su 99.9 8E-23 1.7E-27 136.2 13.9 113 10-123 1-114 (175)
79 cd04103 Centaurin_gamma Centau 99.9 7.9E-23 1.7E-27 135.0 13.3 106 11-123 1-108 (158)
80 cd04145 M_R_Ras_like M-Ras/R-R 99.9 8.8E-23 1.9E-27 134.4 13.0 112 10-122 2-115 (164)
81 smart00173 RAS Ras subfamily o 99.9 7.3E-23 1.6E-27 135.0 12.0 112 11-123 1-114 (164)
82 cd04135 Tc10 TC10 subfamily. 99.9 2.3E-22 4.9E-27 133.9 14.5 112 11-123 1-113 (174)
83 cd04123 Rab21 Rab21 subfamily. 99.9 1.7E-22 3.8E-27 132.5 13.1 112 11-122 1-113 (162)
84 cd01873 RhoBTB RhoBTB subfamil 99.9 1.8E-22 4E-27 137.4 13.6 114 10-125 2-131 (195)
85 cd00154 Rab Rab family. Rab G 99.9 1.8E-22 4E-27 131.4 12.6 112 11-122 1-113 (159)
86 cd04114 Rab30 Rab30 subfamily. 99.9 4.5E-22 9.7E-27 131.8 14.1 115 8-122 5-120 (169)
87 cd04177 RSR1 RSR1 subgroup. R 99.9 2.9E-22 6.3E-27 133.0 13.1 112 11-123 2-115 (168)
88 KOG0091 GTPase Rab39, small G 99.9 1.2E-23 2.6E-28 136.3 6.2 115 9-123 7-125 (213)
89 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 6.9E-23 1.5E-27 135.9 10.0 109 13-125 2-110 (164)
90 PF08477 Miro: Miro-like prote 99.9 1.7E-22 3.8E-27 127.0 11.3 112 12-123 1-117 (119)
91 cd04146 RERG_RasL11_like RERG/ 99.9 1.5E-22 3.2E-27 133.9 11.2 111 12-123 1-115 (165)
92 PLN03118 Rab family protein; P 99.9 5.5E-22 1.2E-26 136.4 13.8 117 4-121 8-127 (211)
93 cd04126 Rab20 Rab20 subfamily. 99.9 3.3E-22 7.2E-27 138.4 12.6 109 11-124 1-110 (220)
94 cd00157 Rho Rho (Ras homology) 99.9 1.5E-21 3.4E-26 129.3 14.6 113 11-124 1-114 (171)
95 smart00177 ARF ARF-like small 99.9 6.4E-22 1.4E-26 132.5 11.1 112 8-124 11-124 (175)
96 cd04148 RGK RGK subfamily. Th 99.9 1.2E-21 2.5E-26 135.8 12.7 111 11-123 1-115 (221)
97 cd04149 Arf6 Arf6 subfamily. 99.9 3.8E-22 8.3E-27 132.8 9.9 112 8-124 7-120 (168)
98 cd01893 Miro1 Miro1 subfamily. 99.9 1.4E-21 2.9E-26 129.6 12.3 111 11-123 1-112 (166)
99 cd04129 Rho2 Rho2 subfamily. 99.9 3.1E-21 6.7E-26 130.4 14.1 115 10-125 1-116 (187)
100 PLN00223 ADP-ribosylation fact 99.9 7.5E-22 1.6E-26 132.9 10.6 112 8-124 15-128 (181)
101 KOG0097 GTPase Rab14, small G 99.9 4.4E-22 9.5E-27 126.7 8.5 119 6-124 7-126 (215)
102 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.4E-21 3E-26 129.0 10.6 108 11-123 1-110 (159)
103 KOG0088 GTPase Rab21, small G 99.9 5E-22 1.1E-26 128.4 7.6 118 5-122 8-126 (218)
104 cd04147 Ras_dva Ras-dva subfam 99.9 2.9E-21 6.2E-26 131.6 11.8 111 12-123 1-113 (198)
105 cd00876 Ras Ras family. The R 99.9 3E-21 6.4E-26 126.4 11.3 111 12-123 1-113 (160)
106 PTZ00133 ADP-ribosylation fact 99.9 2.7E-21 5.9E-26 130.3 10.8 110 9-123 16-127 (182)
107 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 3.4E-21 7.4E-26 129.8 10.9 114 9-123 2-118 (183)
108 cd04139 RalA_RalB RalA/RalB su 99.9 9.7E-21 2.1E-25 124.5 12.3 111 11-122 1-113 (164)
109 cd04158 ARD1 ARD1 subfamily. 99.9 5.9E-21 1.3E-25 127.0 11.3 107 12-123 1-109 (169)
110 cd04161 Arl2l1_Arl13_like Arl2 99.9 5.1E-21 1.1E-25 127.2 10.4 108 12-124 1-110 (167)
111 KOG4252 GTP-binding protein [S 99.9 5.2E-23 1.1E-27 135.3 0.5 118 6-123 16-133 (246)
112 cd04154 Arl2 Arl2 subfamily. 99.9 8.2E-21 1.8E-25 126.6 11.1 113 6-123 10-124 (173)
113 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.6E-22 3.6E-27 127.3 1.9 109 14-122 1-111 (192)
114 cd04137 RheB Rheb (Ras Homolog 99.8 2.9E-20 6.3E-25 124.5 11.7 112 11-123 2-115 (180)
115 KOG0395 Ras-related GTPase [Ge 99.8 1.2E-20 2.6E-25 128.4 9.7 116 9-125 2-119 (196)
116 cd04157 Arl6 Arl6 subfamily. 99.8 1.8E-20 3.9E-25 123.2 10.2 108 12-123 1-113 (162)
117 KOG0081 GTPase Rab27, small G 99.8 2.4E-22 5.2E-27 129.9 0.7 108 5-112 4-120 (219)
118 COG1100 GTPase SAR1 and relate 99.8 4.4E-20 9.4E-25 127.1 11.9 115 9-123 4-120 (219)
119 cd04156 ARLTS1 ARLTS1 subfamil 99.8 3.8E-20 8.3E-25 121.5 10.4 109 12-124 1-111 (160)
120 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 4.2E-20 9.1E-25 123.5 10.5 109 9-122 14-124 (174)
121 PF00025 Arf: ADP-ribosylation 99.8 1.7E-19 3.7E-24 120.9 10.6 112 6-122 10-123 (175)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.6E-19 3.5E-24 118.4 10.3 106 12-122 1-108 (158)
123 smart00178 SAR Sar1p-like memb 99.8 2.9E-19 6.4E-24 120.5 10.5 112 7-123 14-127 (184)
124 KOG0070 GTP-binding ADP-ribosy 99.8 1.3E-19 2.8E-24 119.6 8.2 110 7-121 14-125 (181)
125 cd04151 Arl1 Arl1 subfamily. 99.8 4.2E-19 9E-24 116.7 10.3 108 12-124 1-110 (158)
126 cd04160 Arfrp1 Arfrp1 subfamil 99.8 4.1E-19 8.9E-24 117.4 9.9 107 12-122 1-115 (167)
127 KOG0073 GTP-binding ADP-ribosy 99.8 7.8E-19 1.7E-23 113.9 10.4 112 7-123 13-126 (185)
128 cd04159 Arl10_like Arl10-like 99.8 5.3E-19 1.2E-23 115.1 9.8 105 13-121 2-108 (159)
129 cd00879 Sar1 Sar1 subfamily. 99.8 9.5E-19 2.1E-23 118.1 10.7 111 7-122 16-128 (190)
130 KOG1673 Ras GTPases [General f 99.8 1.4E-18 3.1E-23 112.0 8.4 114 6-119 16-130 (205)
131 TIGR00231 small_GTP small GTP- 99.8 1.7E-17 3.7E-22 107.4 11.3 112 10-121 1-115 (161)
132 cd04105 SR_beta Signal recogni 99.7 2.6E-17 5.7E-22 112.7 10.2 111 12-123 2-118 (203)
133 cd04155 Arl3 Arl3 subfamily. 99.7 2.6E-17 5.6E-22 109.4 9.8 111 5-120 9-121 (173)
134 cd01890 LepA LepA subfamily. 99.7 3.3E-17 7.2E-22 109.4 8.9 97 12-108 2-116 (179)
135 cd01897 NOG NOG1 is a nucleola 99.7 1E-16 2.3E-21 105.9 11.0 110 11-122 1-121 (168)
136 cd01891 TypA_BipA TypA (tyrosi 99.7 2.5E-17 5.4E-22 111.9 8.0 113 11-124 3-129 (194)
137 KOG0071 GTP-binding ADP-ribosy 99.7 6.5E-17 1.4E-21 102.7 8.4 116 8-128 15-130 (180)
138 cd01898 Obg Obg subfamily. Th 99.7 1.3E-16 2.9E-21 105.5 9.6 109 12-121 2-121 (170)
139 cd00882 Ras_like_GTPase Ras-li 99.7 4.2E-16 9E-21 99.8 10.1 107 15-122 1-110 (157)
140 cd04171 SelB SelB subfamily. 99.7 3.1E-16 6.7E-21 103.0 9.6 82 12-94 2-86 (164)
141 KOG0074 GTP-binding ADP-ribosy 99.7 5.4E-16 1.2E-20 98.8 9.7 109 7-119 14-124 (185)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 3.6E-16 7.9E-21 103.2 9.4 84 12-95 2-86 (168)
143 PTZ00099 rab6; Provisional 99.7 5.7E-16 1.2E-20 104.0 10.3 91 33-123 3-94 (176)
144 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.1E-15 2.3E-20 115.4 11.6 111 9-123 202-321 (442)
145 cd01878 HflX HflX subfamily. 99.7 1E-15 2.3E-20 104.5 9.5 112 8-120 39-159 (204)
146 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 2.6E-15 5.5E-20 99.8 10.0 123 1-123 1-123 (216)
147 TIGR03156 GTP_HflX GTP-binding 99.6 1.4E-15 3.1E-20 111.8 9.7 111 9-121 188-308 (351)
148 KOG1707 Predicted Ras related/ 99.6 9.5E-16 2.1E-20 116.1 7.2 115 8-124 7-125 (625)
149 PRK03003 GTP-binding protein D 99.6 3.7E-15 8.1E-20 113.5 10.4 109 8-121 36-153 (472)
150 KOG0075 GTP-binding ADP-ribosy 99.6 2.5E-16 5.4E-21 100.8 3.2 112 9-124 19-132 (186)
151 cd01879 FeoB Ferrous iron tran 99.6 4.7E-15 1E-19 96.8 9.1 106 15-125 1-114 (158)
152 TIGR02528 EutP ethanolamine ut 99.6 4.3E-16 9.4E-21 100.5 4.0 80 12-107 2-86 (142)
153 TIGR03598 GTPase_YsxC ribosome 99.6 4.9E-15 1.1E-19 99.4 9.2 116 5-124 13-141 (179)
154 KOG3883 Ras family small GTPas 99.6 1.7E-14 3.7E-19 93.0 10.3 116 7-123 6-127 (198)
155 cd01881 Obg_like The Obg-like 99.6 1.1E-14 2.4E-19 96.7 9.2 96 15-112 1-110 (176)
156 PRK05291 trmE tRNA modificatio 99.6 1.1E-14 2.4E-19 110.2 10.2 96 9-106 214-318 (449)
157 cd04164 trmE TrmE (MnmE, ThdF, 99.6 2.6E-14 5.6E-19 93.0 10.7 94 11-106 2-104 (157)
158 PRK12299 obgE GTPase CgtA; Rev 99.6 1.7E-14 3.7E-19 105.5 10.1 102 10-113 158-267 (335)
159 PRK03003 GTP-binding protein D 99.6 1.4E-14 3.1E-19 110.3 9.8 113 9-124 210-334 (472)
160 PRK15494 era GTPase Era; Provi 99.6 1.4E-14 3.1E-19 106.2 8.9 99 8-111 50-159 (339)
161 PRK04213 GTP-binding protein; 99.6 3.3E-15 7.3E-20 101.7 5.1 83 6-94 5-102 (201)
162 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 2.2E-14 4.8E-19 99.8 9.1 109 12-121 1-118 (232)
163 cd04167 Snu114p Snu114p subfam 99.6 2E-14 4.4E-19 99.0 8.6 113 12-125 2-136 (213)
164 TIGR00436 era GTP-binding prot 99.6 4.1E-14 8.9E-19 100.8 10.1 108 12-124 2-119 (270)
165 cd00881 GTP_translation_factor 99.6 3.9E-14 8.5E-19 94.9 9.3 110 12-124 1-126 (189)
166 TIGR01393 lepA GTP-binding pro 99.6 2.5E-14 5.3E-19 111.4 9.3 113 10-123 3-133 (595)
167 TIGR00487 IF-2 translation ini 99.5 8E-14 1.7E-18 108.3 11.5 88 8-96 85-172 (587)
168 PRK11058 GTPase HflX; Provisio 99.5 5.1E-14 1.1E-18 105.9 9.7 113 11-124 198-321 (426)
169 cd01889 SelB_euk SelB subfamil 99.5 3.2E-14 7E-19 96.4 7.9 92 11-102 1-111 (192)
170 COG2229 Predicted GTPase [Gene 99.5 7E-14 1.5E-18 92.6 8.9 107 3-113 3-121 (187)
171 cd01895 EngA2 EngA2 subfamily. 99.5 2E-13 4.4E-18 89.9 10.8 112 10-124 2-125 (174)
172 cd01894 EngA1 EngA1 subfamily. 99.5 6.4E-14 1.4E-18 91.2 8.2 107 14-124 1-117 (157)
173 KOG0077 Vesicle coat complex C 99.5 1.8E-14 3.8E-19 94.0 5.3 112 8-124 18-131 (193)
174 PF02421 FeoB_N: Ferrous iron 99.5 2.1E-13 4.5E-18 89.6 10.3 108 11-123 1-116 (156)
175 PRK00454 engB GTP-binding prot 99.5 8.4E-14 1.8E-18 94.2 8.8 90 6-98 20-122 (196)
176 PRK00093 GTP-binding protein D 99.5 1.4E-13 3.1E-18 103.8 9.9 95 11-107 2-107 (435)
177 cd04168 TetM_like Tet(M)-like 99.5 8.9E-14 1.9E-18 97.4 7.9 112 12-124 1-128 (237)
178 KOG4423 GTP-binding protein-li 99.5 1.4E-16 3.1E-21 105.6 -5.9 118 6-123 21-144 (229)
179 TIGR03594 GTPase_EngA ribosome 99.5 5E-13 1.1E-17 100.6 12.1 114 8-124 170-295 (429)
180 TIGR02729 Obg_CgtA Obg family 99.5 2E-13 4.3E-18 99.7 9.5 101 10-112 157-268 (329)
181 TIGR03594 GTPase_EngA ribosome 99.5 2E-13 4.4E-18 102.7 9.5 109 12-123 1-118 (429)
182 PRK05306 infB translation init 99.5 3.8E-13 8.2E-18 107.1 11.1 87 7-95 287-373 (787)
183 cd04163 Era Era subfamily. Er 99.5 4.4E-13 9.5E-18 87.6 9.3 113 10-124 3-123 (168)
184 cd01850 CDC_Septin CDC/Septin. 99.5 1.9E-12 4.1E-17 92.6 12.8 62 8-69 2-73 (276)
185 KOG0076 GTP-binding ADP-ribosy 99.5 1.2E-13 2.5E-18 90.8 5.8 110 8-121 15-133 (197)
186 TIGR00475 selB selenocysteine- 99.5 4.9E-13 1.1E-17 104.1 10.2 109 11-125 1-116 (581)
187 PF01926 MMR_HSR1: 50S ribosom 99.5 1.1E-12 2.4E-17 82.0 9.9 94 12-108 1-104 (116)
188 cd04169 RF3 RF3 subfamily. Pe 99.5 6.1E-13 1.3E-17 94.7 9.6 113 11-124 3-135 (267)
189 cd01896 DRG The developmentall 99.5 1.7E-12 3.6E-17 90.7 11.4 95 12-108 2-104 (233)
190 PRK10218 GTP-binding protein; 99.5 7.1E-13 1.5E-17 103.3 10.4 116 9-125 4-133 (607)
191 CHL00189 infB translation init 99.4 3.3E-13 7.3E-18 106.7 8.4 89 8-96 242-332 (742)
192 PRK09554 feoB ferrous iron tra 99.4 1.9E-12 4E-17 103.4 12.5 112 9-125 2-125 (772)
193 PRK12297 obgE GTPase CgtA; Rev 99.4 1.5E-12 3.3E-17 97.7 10.7 101 11-113 159-270 (424)
194 cd00880 Era_like Era (E. coli 99.4 1.3E-12 2.8E-17 84.4 9.1 109 15-125 1-117 (163)
195 PRK09518 bifunctional cytidyla 99.4 1.5E-12 3.3E-17 103.5 11.1 108 9-122 274-391 (712)
196 PRK09518 bifunctional cytidyla 99.4 8.3E-13 1.8E-17 105.0 9.5 113 9-124 449-573 (712)
197 PRK00093 GTP-binding protein D 99.4 4.1E-12 8.9E-17 95.9 12.0 114 8-124 171-296 (435)
198 PRK05433 GTP-binding protein L 99.4 1E-12 2.2E-17 102.6 8.9 115 9-124 6-138 (600)
199 TIGR00491 aIF-2 translation in 99.4 1.2E-12 2.6E-17 101.7 9.1 93 10-102 4-115 (590)
200 PF09439 SRPRB: Signal recogni 99.4 2E-13 4.4E-18 91.5 4.2 98 9-110 2-104 (181)
201 cd01885 EF2 EF2 (for archaea a 99.4 1E-12 2.2E-17 91.2 7.7 111 12-123 2-136 (222)
202 TIGR01394 TypA_BipA GTP-bindin 99.4 1.3E-12 2.8E-17 101.8 8.5 113 12-125 3-129 (594)
203 cd04166 CysN_ATPS CysN_ATPS su 99.4 1.6E-12 3.4E-17 89.4 8.1 85 12-96 1-114 (208)
204 PRK00089 era GTPase Era; Revie 99.4 2.6E-12 5.6E-17 92.4 9.3 113 9-125 4-126 (292)
205 TIGR00483 EF-1_alpha translati 99.4 2.3E-12 4.9E-17 97.2 9.3 91 6-98 3-124 (426)
206 PRK12317 elongation factor 1-a 99.4 4.2E-12 9E-17 95.7 10.0 119 7-125 3-152 (425)
207 PF00009 GTP_EFTU: Elongation 99.4 1.1E-12 2.3E-17 88.8 6.1 116 9-125 2-135 (188)
208 cd04170 EF-G_bact Elongation f 99.4 2.1E-12 4.6E-17 91.9 7.7 109 12-123 1-127 (268)
209 cd04104 p47_IIGP_like p47 (47- 99.4 4.9E-12 1.1E-16 86.2 8.6 110 10-124 1-119 (197)
210 TIGR00437 feoB ferrous iron tr 99.4 7.5E-12 1.6E-16 97.6 10.3 103 17-124 1-111 (591)
211 PRK12298 obgE GTPase CgtA; Rev 99.4 5.7E-12 1.2E-16 93.9 9.0 101 11-112 160-270 (390)
212 KOG0072 GTP-binding ADP-ribosy 99.3 4.2E-13 9E-18 85.8 2.5 95 9-108 17-111 (182)
213 PRK12296 obgE GTPase CgtA; Rev 99.3 5.8E-12 1.2E-16 96.0 9.1 99 10-111 159-269 (500)
214 PRK15467 ethanolamine utilizat 99.3 1.6E-12 3.5E-17 85.7 5.3 82 12-108 3-88 (158)
215 PRK04004 translation initiatio 99.3 9.6E-12 2.1E-16 96.9 10.4 95 8-102 4-117 (586)
216 PRK00741 prfC peptide chain re 99.3 4.9E-12 1.1E-16 97.4 7.9 116 8-124 8-143 (526)
217 PRK13351 elongation factor G; 99.3 6.2E-12 1.3E-16 99.8 8.5 115 6-123 4-136 (687)
218 cd01876 YihA_EngB The YihA (En 99.3 7.9E-12 1.7E-16 81.8 7.6 94 12-108 1-109 (170)
219 cd01886 EF-G Elongation factor 99.3 1.7E-11 3.6E-16 87.5 9.2 111 12-125 1-129 (270)
220 cd01884 EF_Tu EF-Tu subfamily. 99.3 1.5E-11 3.4E-16 83.8 8.6 114 10-124 2-130 (195)
221 TIGR00503 prfC peptide chain r 99.3 1.1E-11 2.5E-16 95.4 8.4 116 8-124 9-144 (527)
222 cd01888 eIF2_gamma eIF2-gamma 99.3 1.3E-11 2.8E-16 84.6 7.7 85 11-95 1-119 (203)
223 COG0218 Predicted GTPase [Gene 99.3 2.6E-11 5.7E-16 81.8 8.4 116 6-125 20-148 (200)
224 cd01883 EF1_alpha Eukaryotic e 99.3 1.6E-11 3.5E-16 85.0 7.6 84 12-95 1-113 (219)
225 COG1159 Era GTPase [General fu 99.3 1.6E-11 3.5E-16 87.2 7.7 87 8-95 4-98 (298)
226 TIGR00485 EF-Tu translation el 99.3 2.4E-11 5.3E-16 90.8 8.8 119 6-125 8-141 (394)
227 PRK12735 elongation factor Tu; 99.3 3.7E-11 8E-16 89.9 9.6 118 7-125 9-141 (396)
228 COG0486 ThdF Predicted GTPase 99.3 3.8E-11 8.2E-16 89.7 9.5 85 9-95 216-309 (454)
229 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 2.6E-11 5.7E-16 82.5 7.8 82 11-94 1-95 (196)
230 KOG1423 Ras-like GTPase ERA [C 99.3 2.3E-11 5E-16 86.8 7.4 88 6-94 68-167 (379)
231 TIGR00490 aEF-2 translation el 99.3 1.3E-11 2.9E-16 98.3 6.9 118 6-124 15-150 (720)
232 PLN03126 Elongation factor Tu; 99.2 4.6E-11 9.9E-16 91.1 9.2 119 6-125 77-210 (478)
233 COG1160 Predicted GTPases [Gen 99.2 1.9E-11 4.2E-16 91.0 7.0 83 11-95 4-96 (444)
234 TIGR00484 EF-G translation elo 99.2 7.6E-11 1.7E-15 93.6 10.3 116 6-124 6-139 (689)
235 TIGR00991 3a0901s02IAP34 GTP-b 99.2 8.1E-11 1.8E-15 84.8 9.4 86 7-94 35-130 (313)
236 PRK12736 elongation factor Tu; 99.2 7.9E-11 1.7E-15 88.1 8.7 118 7-125 9-141 (394)
237 CHL00071 tufA elongation facto 99.2 1.5E-10 3.2E-15 87.0 10.0 119 6-125 8-141 (409)
238 cd01853 Toc34_like Toc34-like 99.2 1.6E-10 3.4E-15 81.5 9.3 86 7-94 28-126 (249)
239 TIGR03680 eif2g_arch translati 99.2 4.1E-11 8.9E-16 89.9 6.7 118 8-125 2-147 (406)
240 COG3596 Predicted GTPase [Gene 99.2 1.9E-11 4.1E-16 86.0 4.2 104 7-113 36-147 (296)
241 cd01899 Ygr210 Ygr210 subfamil 99.2 1.9E-10 4.1E-15 83.7 9.4 81 13-93 1-110 (318)
242 PRK10512 selenocysteinyl-tRNA- 99.2 1.8E-10 3.9E-15 90.3 9.7 109 12-125 2-117 (614)
243 PRK00049 elongation factor Tu; 99.2 2.6E-10 5.7E-15 85.3 9.7 119 6-125 8-141 (396)
244 smart00010 small_GTPase Small 99.2 2.4E-10 5.2E-15 71.6 8.2 80 11-119 1-82 (124)
245 PRK04000 translation initiatio 99.2 1.3E-10 2.9E-15 87.3 7.4 90 6-95 5-121 (411)
246 TIGR02034 CysN sulfate adenyly 99.1 1.7E-10 3.7E-15 86.6 7.0 114 11-125 1-146 (406)
247 COG1084 Predicted GTPase [Gene 99.1 7.5E-10 1.6E-14 79.7 9.8 108 9-120 167-286 (346)
248 PRK09602 translation-associate 99.1 8.4E-10 1.8E-14 82.5 10.4 83 11-93 2-113 (396)
249 PLN03127 Elongation factor Tu; 99.1 5.5E-10 1.2E-14 84.7 9.3 118 7-125 58-190 (447)
250 PRK05124 cysN sulfate adenylyl 99.1 4.3E-10 9.3E-15 85.9 8.4 89 7-95 24-143 (474)
251 KOG3886 GTP-binding protein [S 99.1 8.3E-11 1.8E-15 81.0 4.0 109 10-120 4-122 (295)
252 PRK05506 bifunctional sulfate 99.1 2.9E-10 6.3E-15 89.6 7.6 119 6-125 20-170 (632)
253 PRK12739 elongation factor G; 99.1 7.1E-10 1.5E-14 88.2 9.5 116 7-125 5-138 (691)
254 cd04165 GTPBP1_like GTPBP1-lik 99.1 1.3E-09 2.7E-14 75.9 9.4 110 12-124 1-150 (224)
255 COG1160 Predicted GTPases [Gen 99.1 2E-09 4.3E-14 80.4 10.9 113 9-124 177-301 (444)
256 PTZ00141 elongation factor 1- 99.1 9.2E-10 2E-14 83.6 9.3 118 6-123 3-156 (446)
257 PLN00043 elongation factor 1-a 99.1 1.3E-09 2.8E-14 82.7 9.5 118 7-125 4-158 (447)
258 KOG0090 Signal recognition par 99.1 2.5E-10 5.5E-15 77.6 4.7 97 11-112 39-139 (238)
259 PRK00007 elongation factor G; 99.1 7.9E-10 1.7E-14 87.9 8.2 116 7-125 7-140 (693)
260 PF04548 AIG1: AIG1 family; I 99.1 8.8E-10 1.9E-14 76.0 7.5 81 11-93 1-94 (212)
261 COG1163 DRG Predicted GTPase [ 99.0 3.2E-09 6.9E-14 76.4 10.2 97 9-108 62-167 (365)
262 COG0370 FeoB Fe2+ transport sy 99.0 5.6E-09 1.2E-13 81.3 11.6 87 9-97 2-96 (653)
263 PF10662 PduV-EutP: Ethanolami 99.0 4.6E-10 9.9E-15 72.6 4.6 70 12-95 3-76 (143)
264 PF05783 DLIC: Dynein light in 99.0 5.4E-09 1.2E-13 79.6 10.5 104 8-114 23-133 (472)
265 PF00735 Septin: Septin; Inte 99.0 7.9E-09 1.7E-13 74.1 10.5 61 8-68 2-72 (281)
266 KOG1191 Mitochondrial GTPase [ 98.9 3.3E-09 7.2E-14 79.8 7.4 100 8-108 266-376 (531)
267 PTZ00416 elongation factor 2; 98.9 4.3E-09 9.3E-14 85.2 8.0 117 8-125 17-157 (836)
268 PLN00116 translation elongatio 98.9 3.2E-09 6.9E-14 86.1 7.1 119 6-125 15-163 (843)
269 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 4.7E-09 1E-13 67.9 6.2 54 12-69 85-138 (141)
270 PRK12740 elongation factor G; 98.9 3.9E-09 8.4E-14 83.8 6.9 106 16-124 1-124 (668)
271 PTZ00258 GTP-binding protein; 98.9 1.9E-08 4.2E-13 74.9 10.1 87 7-93 18-126 (390)
272 TIGR00993 3a0901s04IAP86 chlor 98.9 2.4E-08 5.2E-13 78.2 10.2 114 8-123 116-247 (763)
273 PF00350 Dynamin_N: Dynamin fa 98.9 1E-08 2.2E-13 67.8 6.8 56 60-115 102-161 (168)
274 PRK09601 GTP-binding protein Y 98.9 1.7E-08 3.7E-13 74.5 8.4 83 11-93 3-107 (364)
275 KOG3905 Dynein light intermedi 98.9 2E-08 4.3E-13 72.7 8.3 105 8-115 50-161 (473)
276 PRK07560 elongation factor EF- 98.8 5.9E-09 1.3E-13 83.5 5.5 117 7-124 17-151 (731)
277 cd01900 YchF YchF subfamily. 98.8 2.6E-08 5.7E-13 71.1 8.1 81 13-93 1-103 (274)
278 cd04178 Nucleostemin_like Nucl 98.8 1.9E-08 4.1E-13 67.3 6.7 56 9-68 116-171 (172)
279 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.4E-08 5.2E-13 65.6 6.8 56 9-68 101-156 (157)
280 cd01856 YlqF YlqF. Proteins o 98.8 2.5E-08 5.5E-13 66.5 6.9 58 8-69 113-170 (171)
281 KOG1707 Predicted Ras related/ 98.8 1.2E-07 2.6E-12 72.8 10.9 111 5-118 420-530 (625)
282 KOG3887 Predicted small GTPase 98.8 8.3E-09 1.8E-13 71.9 4.1 108 8-118 25-139 (347)
283 COG5256 TEF1 Translation elong 98.7 4.9E-08 1.1E-12 72.4 7.7 91 6-96 3-122 (428)
284 cd01859 MJ1464 MJ1464. This f 98.7 5.2E-08 1.1E-12 63.9 7.0 56 9-68 100-155 (156)
285 COG2262 HflX GTPases [General 98.7 8.3E-08 1.8E-12 71.1 8.6 111 8-120 190-310 (411)
286 COG0480 FusA Translation elong 98.7 6.2E-08 1.3E-12 76.9 8.1 113 1-114 1-131 (697)
287 PRK09563 rbgA GTPase YlqF; Rev 98.7 7.8E-08 1.7E-12 69.2 7.9 59 8-70 119-177 (287)
288 TIGR03596 GTPase_YlqF ribosome 98.7 6.8E-08 1.5E-12 69.2 7.2 58 8-69 116-173 (276)
289 cd01855 YqeH YqeH. YqeH is an 98.7 4.8E-08 1E-12 66.1 5.8 56 10-68 127-189 (190)
290 COG1161 Predicted GTPases [Gen 98.6 7.8E-08 1.7E-12 70.3 6.3 58 8-69 130-187 (322)
291 cd01882 BMS1 Bms1. Bms1 is an 98.6 3E-07 6.5E-12 64.0 8.3 107 9-124 38-145 (225)
292 PF05049 IIGP: Interferon-indu 98.6 2.3E-08 5E-13 74.0 2.7 83 8-91 33-123 (376)
293 KOG1486 GTP-binding protein DR 98.6 1.1E-06 2.4E-11 61.8 10.0 97 9-108 61-166 (364)
294 COG5019 CDC3 Septin family pro 98.5 1.5E-06 3.2E-11 63.8 10.0 62 7-68 20-91 (373)
295 cd01849 YlqF_related_GTPase Yl 98.5 4.3E-07 9.4E-12 59.6 6.5 57 8-68 98-154 (155)
296 KOG0705 GTPase-activating prot 98.5 1.4E-07 3E-12 72.3 4.0 94 9-109 29-122 (749)
297 KOG1489 Predicted GTP-binding 98.5 1.9E-06 4.2E-11 62.2 9.6 110 10-121 196-319 (366)
298 PTZ00327 eukaryotic translatio 98.4 6.8E-07 1.5E-11 68.2 6.3 118 7-125 31-184 (460)
299 KOG2655 Septin family protein 98.4 1.2E-06 2.5E-11 64.5 7.1 62 7-68 18-88 (366)
300 PF03193 DUF258: Protein of un 98.4 3.2E-07 7E-12 60.6 3.6 59 11-72 36-100 (161)
301 KOG0468 U5 snRNP-specific prot 98.4 2.3E-06 5.1E-11 67.1 8.4 107 4-110 122-248 (971)
302 KOG1547 Septin CDC10 and relat 98.4 5.1E-06 1.1E-10 58.1 8.9 64 8-71 44-116 (336)
303 TIGR03597 GTPase_YqeH ribosome 98.3 1.5E-06 3.3E-11 64.5 6.4 56 11-69 155-214 (360)
304 PRK14845 translation initiatio 98.3 2.3E-06 5E-11 70.7 7.9 101 21-125 472-591 (1049)
305 COG4917 EutP Ethanolamine util 98.3 2.8E-07 6.1E-12 58.0 1.9 24 12-35 3-26 (148)
306 COG4108 PrfC Peptide chain rel 98.3 1.8E-06 3.8E-11 64.8 6.3 88 9-96 11-118 (528)
307 smart00053 DYNc Dynamin, GTPas 98.3 4.4E-06 9.5E-11 58.7 8.0 26 9-34 25-50 (240)
308 PRK13796 GTPase YqeH; Provisio 98.3 1.6E-06 3.4E-11 64.5 5.6 56 11-69 161-220 (365)
309 TIGR00092 GTP-binding protein 98.3 4.9E-06 1.1E-10 61.7 7.9 82 11-93 3-108 (368)
310 PRK12288 GTPase RsgA; Reviewed 98.3 3E-06 6.4E-11 62.6 6.6 58 13-73 208-271 (347)
311 COG1162 Predicted GTPases [Gen 98.3 5.4E-06 1.2E-10 59.7 7.5 59 12-73 166-230 (301)
312 KOG0462 Elongation factor-type 98.3 7.2E-06 1.6E-10 63.0 8.5 103 8-110 58-176 (650)
313 TIGR00157 ribosome small subun 98.2 3E-06 6.6E-11 59.8 5.9 59 11-73 121-185 (245)
314 cd01851 GBP Guanylate-binding 98.2 1.3E-05 2.7E-10 55.9 8.1 96 9-105 6-115 (224)
315 PRK12289 GTPase RsgA; Reviewed 98.2 4.1E-06 8.8E-11 62.0 5.8 56 13-71 175-236 (352)
316 COG0012 Predicted GTPase, prob 98.2 1.4E-05 2.9E-10 59.0 8.4 83 10-93 2-108 (372)
317 TIGR02836 spore_IV_A stage IV 98.2 1.9E-05 4.1E-10 59.5 9.2 115 9-123 16-191 (492)
318 KOG0410 Predicted GTP binding 98.2 4.1E-06 8.9E-11 60.8 5.5 102 9-112 177-287 (410)
319 COG1217 TypA Predicted membran 98.2 9.1E-06 2E-10 61.6 7.4 116 10-126 5-134 (603)
320 KOG1424 Predicted GTP-binding 98.2 2.6E-06 5.6E-11 64.9 4.5 57 10-70 314-370 (562)
321 KOG1954 Endocytosis/signaling 98.2 7.4E-06 1.6E-10 60.6 6.6 117 9-125 57-224 (532)
322 smart00275 G_alpha G protein a 98.2 1.7E-05 3.6E-10 58.6 8.4 68 51-120 178-257 (342)
323 COG0481 LepA Membrane GTPase L 98.1 1.6E-05 3.4E-10 60.5 8.2 104 8-111 7-128 (603)
324 COG0532 InfB Translation initi 98.1 1.7E-05 3.6E-10 60.7 8.4 110 9-121 4-114 (509)
325 KOG1491 Predicted GTP-binding 98.1 2.1E-05 4.5E-10 57.4 8.2 87 7-93 17-125 (391)
326 cd00066 G-alpha G protein alph 98.1 2.8E-05 6.1E-10 56.9 8.4 63 58-120 160-234 (317)
327 KOG0458 Elongation factor 1 al 98.1 2.9E-05 6.3E-10 60.0 8.7 89 6-94 173-290 (603)
328 KOG1145 Mitochondrial translat 98.1 1.8E-05 3.8E-10 61.0 7.3 111 8-122 151-261 (683)
329 KOG0461 Selenocysteine-specifi 98.1 2.1E-05 4.5E-10 57.8 7.3 90 6-95 3-106 (522)
330 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1.6E-05 3.5E-10 57.3 6.6 60 11-73 162-227 (287)
331 KOG0082 G-protein alpha subuni 98.0 4.5E-05 9.8E-10 56.2 8.2 54 59-112 195-258 (354)
332 PRK00098 GTPase RsgA; Reviewed 98.0 1.7E-05 3.6E-10 57.5 6.0 23 12-34 166-188 (298)
333 KOG4273 Uncharacterized conser 98.0 5.1E-05 1.1E-09 53.6 7.4 98 10-107 4-103 (418)
334 COG0536 Obg Predicted GTPase [ 97.9 6.2E-05 1.4E-09 55.0 7.7 98 12-111 161-269 (369)
335 KOG2486 Predicted GTPase [Gene 97.9 1.2E-05 2.6E-10 57.3 3.6 113 7-124 133-260 (320)
336 PRK13768 GTPase; Provisional 97.9 1.3E-05 2.9E-10 56.8 3.3 21 11-31 3-23 (253)
337 PF13207 AAA_17: AAA domain; P 97.8 2E-05 4.3E-10 49.2 3.2 22 12-33 1-22 (121)
338 COG2895 CysN GTPases - Sulfate 97.8 7.2E-05 1.6E-09 55.1 6.1 87 7-93 3-120 (431)
339 PRK08118 topology modulation p 97.8 2.2E-05 4.8E-10 52.3 3.3 23 11-33 2-24 (167)
340 KOG1490 GTP-binding protein CR 97.8 2.8E-05 6E-10 59.4 3.5 113 7-122 165-289 (620)
341 PRK07261 topology modulation p 97.7 3.5E-05 7.5E-10 51.5 3.3 22 12-33 2-23 (171)
342 PF03266 NTPase_1: NTPase; In 97.7 8.9E-05 1.9E-09 49.5 5.1 52 12-66 1-52 (168)
343 COG0563 Adk Adenylate kinase a 97.7 4.8E-05 1E-09 51.2 3.3 22 12-33 2-23 (178)
344 PF13671 AAA_33: AAA domain; P 97.7 4.2E-05 9.1E-10 49.0 2.9 20 13-32 2-21 (143)
345 KOG2484 GTPase [General functi 97.6 5.1E-05 1.1E-09 56.4 3.5 58 8-69 250-307 (435)
346 KOG1487 GTP-binding protein DR 97.6 0.00041 8.9E-09 49.3 7.6 96 10-108 59-163 (358)
347 cd02042 ParA ParA and ParB of 97.6 0.00037 8E-09 42.4 6.1 82 13-106 2-84 (104)
348 PRK06217 hypothetical protein; 97.5 9.5E-05 2.1E-09 49.8 3.3 23 11-33 2-24 (183)
349 COG1618 Predicted nucleotide k 97.5 0.00044 9.6E-09 45.7 6.2 57 8-67 3-59 (179)
350 KOG0448 Mitofusin 1 GTPase, in 97.5 0.00058 1.3E-08 54.0 7.9 119 8-127 107-276 (749)
351 COG1116 TauB ABC-type nitrate/ 97.5 9E-05 1.9E-09 52.0 3.0 21 13-33 32-52 (248)
352 cd02019 NK Nucleoside/nucleoti 97.5 0.00013 2.8E-09 41.4 3.1 21 13-33 2-22 (69)
353 KOG2423 Nucleolar GTPase [Gene 97.5 0.00014 3.1E-09 54.4 3.9 85 7-98 304-390 (572)
354 COG5192 BMS1 GTP-binding prote 97.5 0.00037 8.1E-09 54.5 6.2 77 9-93 68-144 (1077)
355 PF13521 AAA_28: AAA domain; P 97.5 7.2E-05 1.6E-09 49.3 2.2 22 12-33 1-22 (163)
356 TIGR03348 VI_IcmF type VI secr 97.4 0.00024 5.2E-09 60.1 5.3 100 13-117 114-246 (1169)
357 PF00004 AAA: ATPase family as 97.4 0.00015 3.2E-09 45.6 3.2 21 13-33 1-21 (132)
358 smart00382 AAA ATPases associa 97.4 0.00017 3.6E-09 45.1 3.4 26 11-36 3-28 (148)
359 KOG3347 Predicted nucleotide k 97.4 0.00013 2.8E-09 47.7 2.7 27 6-32 3-29 (176)
360 KOG0464 Elongation factor G [T 97.4 8.3E-05 1.8E-09 56.0 2.1 99 9-107 36-150 (753)
361 TIGR00157 ribosome small subun 97.4 0.0003 6.4E-09 49.7 4.7 55 70-124 24-79 (245)
362 PF13238 AAA_18: AAA domain; P 97.4 0.00016 3.5E-09 45.2 2.9 21 13-33 1-21 (129)
363 PRK03839 putative kinase; Prov 97.4 0.00019 4.1E-09 48.1 3.3 22 12-33 2-23 (180)
364 PRK14530 adenylate kinase; Pro 97.4 0.00019 4E-09 49.6 3.3 22 11-32 4-25 (215)
365 PRK14738 gmk guanylate kinase; 97.4 0.00027 5.8E-09 48.6 4.0 27 7-33 10-36 (206)
366 PF03205 MobB: Molybdopterin g 97.4 0.0002 4.3E-09 46.4 3.2 22 12-33 2-23 (140)
367 TIGR01425 SRP54_euk signal rec 97.4 0.00054 1.2E-08 52.0 5.9 64 58-125 182-252 (429)
368 cd00071 GMPK Guanosine monopho 97.4 0.0002 4.3E-09 46.1 3.1 21 13-33 2-22 (137)
369 cd03222 ABC_RNaseL_inhibitor T 97.4 0.001 2.2E-08 44.8 6.6 89 12-111 27-120 (177)
370 PF07728 AAA_5: AAA domain (dy 97.4 0.0002 4.4E-09 45.8 3.1 22 12-33 1-22 (139)
371 PRK10078 ribose 1,5-bisphospho 97.3 0.00021 4.5E-09 48.2 3.3 22 12-33 4-25 (186)
372 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00079 1.7E-08 43.2 5.7 22 12-33 24-45 (133)
373 COG3839 MalK ABC-type sugar tr 97.3 0.00023 5E-09 52.4 3.6 22 13-34 32-53 (338)
374 TIGR02322 phosphon_PhnN phosph 97.3 0.0002 4.4E-09 47.8 3.1 22 12-33 3-24 (179)
375 KOG3859 Septins (P-loop GTPase 97.3 0.00066 1.4E-08 48.8 5.5 61 8-68 40-104 (406)
376 PF00005 ABC_tran: ABC transpo 97.3 0.00022 4.8E-09 45.4 2.9 22 12-33 13-34 (137)
377 COG4615 PvdE ABC-type sideroph 97.3 0.00015 3.3E-09 54.3 2.3 82 13-110 352-433 (546)
378 COG1126 GlnQ ABC-type polar am 97.3 0.00036 7.7E-09 48.3 3.9 24 12-35 30-53 (240)
379 KOG2485 Conserved ATP/GTP bind 97.3 0.0007 1.5E-08 49.1 5.4 62 7-69 140-206 (335)
380 TIGR03263 guanyl_kin guanylate 97.3 0.00025 5.4E-09 47.3 3.1 22 12-33 3-24 (180)
381 PRK14532 adenylate kinase; Pro 97.3 0.00026 5.7E-09 47.7 3.1 22 12-33 2-23 (188)
382 COG1136 SalX ABC-type antimicr 97.3 0.00024 5.3E-09 49.4 2.9 22 12-33 33-54 (226)
383 PRK14531 adenylate kinase; Pro 97.3 0.00031 6.6E-09 47.3 3.3 24 10-33 2-25 (183)
384 COG0194 Gmk Guanylate kinase [ 97.3 0.00022 4.9E-09 48.1 2.6 24 11-34 5-28 (191)
385 PRK13949 shikimate kinase; Pro 97.3 0.00032 6.9E-09 46.8 3.3 22 12-33 3-24 (169)
386 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00028 6E-09 47.3 3.0 21 11-31 4-24 (188)
387 PRK10751 molybdopterin-guanine 97.3 0.00039 8.5E-09 46.6 3.6 25 9-33 5-29 (173)
388 cd02023 UMPK Uridine monophosp 97.2 0.0003 6.6E-09 47.8 3.1 21 13-33 2-22 (198)
389 PRK05416 glmZ(sRNA)-inactivati 97.2 0.0022 4.7E-08 46.4 7.6 75 11-111 7-83 (288)
390 TIGR00235 udk uridine kinase. 97.2 0.00042 9.1E-09 47.5 3.7 24 9-32 5-28 (207)
391 PF13555 AAA_29: P-loop contai 97.2 0.00043 9.4E-09 38.5 3.1 21 12-32 25-45 (62)
392 PRK14737 gmk guanylate kinase; 97.2 0.00034 7.3E-09 47.4 3.2 22 12-33 6-27 (186)
393 PRK08233 hypothetical protein; 97.2 0.0004 8.8E-09 46.2 3.5 23 11-33 4-26 (182)
394 PF13173 AAA_14: AAA domain 97.2 0.00032 7E-09 44.5 2.8 24 12-35 4-27 (128)
395 cd01428 ADK Adenylate kinase ( 97.2 0.00031 6.7E-09 47.3 2.9 22 12-33 1-22 (194)
396 cd03111 CpaE_like This protein 97.2 0.0016 3.4E-08 40.0 5.8 91 13-112 2-93 (106)
397 PRK05480 uridine/cytidine kina 97.2 0.00043 9.4E-09 47.4 3.6 25 9-33 5-29 (209)
398 cd01131 PilT Pilus retraction 97.2 0.0015 3.3E-08 44.6 6.3 21 13-33 4-24 (198)
399 COG0050 TufB GTPases - transla 97.2 0.00044 9.5E-09 50.0 3.6 88 9-96 11-112 (394)
400 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00037 8E-09 46.6 3.1 21 13-33 2-22 (183)
401 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00038 8.3E-09 43.0 2.8 21 11-31 16-36 (107)
402 TIGR01313 therm_gnt_kin carboh 97.2 0.00031 6.6E-09 46.2 2.6 21 13-33 1-21 (163)
403 PF04665 Pox_A32: Poxvirus A32 97.2 0.0004 8.6E-09 48.9 3.2 25 9-33 12-36 (241)
404 PRK00300 gmk guanylate kinase; 97.2 0.00039 8.5E-09 47.4 3.1 23 11-33 6-28 (205)
405 TIGR01351 adk adenylate kinase 97.2 0.00033 7.1E-09 48.2 2.7 21 12-32 1-21 (210)
406 PRK02496 adk adenylate kinase; 97.2 0.00048 1E-08 46.3 3.5 23 11-33 2-24 (184)
407 cd00009 AAA The AAA+ (ATPases 97.1 0.00047 1E-08 43.5 3.1 25 10-34 19-43 (151)
408 cd01983 Fer4_NifH The Fer4_Nif 97.1 0.0039 8.4E-08 36.6 7.0 77 13-104 2-79 (99)
409 PTZ00088 adenylate kinase 1; P 97.1 0.00055 1.2E-08 47.9 3.6 24 10-33 6-29 (229)
410 COG1117 PstB ABC-type phosphat 97.1 0.00039 8.5E-09 48.1 2.8 21 12-32 35-55 (253)
411 PF13401 AAA_22: AAA domain; P 97.1 0.00044 9.6E-09 43.5 2.8 23 11-33 5-27 (131)
412 PRK10646 ADP-binding protein; 97.1 0.0031 6.7E-08 41.5 6.8 22 12-33 30-51 (153)
413 TIGR00101 ureG urease accessor 97.1 0.00058 1.3E-08 46.7 3.5 23 11-33 2-24 (199)
414 COG3842 PotA ABC-type spermidi 97.1 0.00043 9.4E-09 51.2 3.0 22 13-34 34-55 (352)
415 PRK06762 hypothetical protein; 97.1 0.00051 1.1E-08 45.3 3.1 23 11-33 3-25 (166)
416 KOG1144 Translation initiation 97.1 0.0016 3.5E-08 52.3 6.1 87 9-95 474-576 (1064)
417 cd03238 ABC_UvrA The excision 97.1 0.00058 1.3E-08 45.9 3.3 21 11-31 22-42 (176)
418 PRK06547 hypothetical protein; 97.1 0.00068 1.5E-08 45.4 3.6 26 8-33 13-38 (172)
419 PRK05057 aroK shikimate kinase 97.1 0.00061 1.3E-08 45.5 3.3 23 11-33 5-27 (172)
420 PF00485 PRK: Phosphoribulokin 97.1 0.00051 1.1E-08 46.6 2.9 20 13-32 2-21 (194)
421 cd02025 PanK Pantothenate kina 97.1 0.00052 1.1E-08 47.7 3.0 20 13-32 2-21 (220)
422 PRK00625 shikimate kinase; Pro 97.1 0.00064 1.4E-08 45.5 3.3 22 12-33 2-23 (173)
423 PRK05541 adenylylsulfate kinas 97.1 0.00082 1.8E-08 44.8 3.7 24 9-32 6-29 (176)
424 PLN02200 adenylate kinase fami 97.1 0.00089 1.9E-08 47.0 4.0 24 9-32 42-65 (234)
425 COG1120 FepC ABC-type cobalami 97.0 0.00057 1.2E-08 48.5 3.0 20 13-32 31-50 (258)
426 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0036 7.8E-08 44.7 7.1 86 12-101 82-167 (264)
427 cd02021 GntK Gluconate kinase 97.0 0.00067 1.4E-08 44.0 3.1 21 13-33 2-22 (150)
428 PRK13947 shikimate kinase; Pro 97.0 0.00071 1.5E-08 44.8 3.2 22 12-33 3-24 (171)
429 cd01130 VirB11-like_ATPase Typ 97.0 0.00072 1.6E-08 45.6 3.3 24 10-33 25-48 (186)
430 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.0007 1.5E-08 46.6 3.2 22 12-33 32-53 (218)
431 PRK14528 adenylate kinase; Pro 97.0 0.00077 1.7E-08 45.6 3.3 22 11-32 2-23 (186)
432 PF02367 UPF0079: Uncharacteri 97.0 0.0014 3.1E-08 41.4 4.3 23 11-33 16-38 (123)
433 cd00227 CPT Chloramphenicol (C 97.0 0.00066 1.4E-08 45.3 3.0 22 12-33 4-25 (175)
434 COG4525 TauB ABC-type taurine 97.0 0.00064 1.4E-08 46.6 2.8 21 12-32 33-53 (259)
435 COG3523 IcmF Type VI protein s 97.0 0.001 2.2E-08 56.0 4.5 118 13-133 128-273 (1188)
436 PHA00729 NTP-binding motif con 97.0 0.00079 1.7E-08 47.0 3.4 24 10-33 17-40 (226)
437 PTZ00301 uridine kinase; Provi 97.0 0.0007 1.5E-08 46.8 3.1 21 11-31 4-24 (210)
438 KOG0467 Translation elongation 97.0 0.0029 6.4E-08 50.8 6.7 91 6-96 5-109 (887)
439 PF13191 AAA_16: AAA ATPase do 97.0 0.00068 1.5E-08 45.1 2.8 26 7-32 21-46 (185)
440 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00081 1.8E-08 45.9 3.2 22 12-33 28-49 (205)
441 PRK00279 adk adenylate kinase; 97.0 0.00085 1.8E-08 46.3 3.3 22 12-33 2-23 (215)
442 TIGR00960 3a0501s02 Type II (G 97.0 0.00081 1.8E-08 46.3 3.2 22 12-33 31-52 (216)
443 cd00464 SK Shikimate kinase (S 97.0 0.00074 1.6E-08 43.7 2.9 22 12-33 1-22 (154)
444 TIGR02881 spore_V_K stage V sp 97.0 0.001 2.2E-08 47.3 3.7 26 7-32 39-64 (261)
445 TIGR01166 cbiO cobalt transpor 97.0 0.00076 1.7E-08 45.5 3.0 22 12-33 20-41 (190)
446 cd03269 ABC_putative_ATPase Th 97.0 0.00086 1.9E-08 45.9 3.3 22 12-33 28-49 (210)
447 KOG0066 eIF2-interacting prote 97.0 0.0036 7.8E-08 48.0 6.7 24 10-33 613-636 (807)
448 cd03292 ABC_FtsE_transporter F 97.0 0.00086 1.9E-08 46.0 3.3 22 12-33 29-50 (214)
449 TIGR02315 ABC_phnC phosphonate 97.0 0.00085 1.8E-08 47.0 3.2 22 12-33 30-51 (243)
450 cd03264 ABC_drug_resistance_li 97.0 0.00079 1.7E-08 46.1 3.0 22 12-33 27-48 (211)
451 PRK13851 type IV secretion sys 96.9 0.0044 9.5E-08 46.0 7.0 24 10-33 162-185 (344)
452 cd03225 ABC_cobalt_CbiO_domain 96.9 0.0009 2E-08 45.8 3.3 22 12-33 29-50 (211)
453 PRK13695 putative NTPase; Prov 96.9 0.00095 2.1E-08 44.5 3.3 22 11-32 1-22 (174)
454 cd03261 ABC_Org_Solvent_Resist 96.9 0.00088 1.9E-08 46.7 3.2 22 12-33 28-49 (235)
455 cd03265 ABC_DrrA DrrA is the A 96.9 0.00091 2E-08 46.2 3.3 22 12-33 28-49 (220)
456 PRK08099 bifunctional DNA-bind 96.9 0.00087 1.9E-08 50.6 3.3 25 9-33 218-242 (399)
457 COG1936 Predicted nucleotide k 96.9 0.00085 1.8E-08 44.8 2.9 21 11-31 1-21 (180)
458 PF05729 NACHT: NACHT domain 96.9 0.00089 1.9E-08 43.5 3.0 21 13-33 3-23 (166)
459 cd03224 ABC_TM1139_LivF_branch 96.9 0.00092 2E-08 46.1 3.2 22 12-33 28-49 (222)
460 PF00910 RNA_helicase: RNA hel 96.9 0.00081 1.7E-08 41.4 2.6 21 13-33 1-21 (107)
461 TIGR00073 hypB hydrogenase acc 96.9 0.0011 2.3E-08 45.5 3.4 25 9-33 21-45 (207)
462 PRK14529 adenylate kinase; Pro 96.9 0.001 2.2E-08 46.4 3.3 22 12-33 2-23 (223)
463 cd03262 ABC_HisP_GlnQ_permease 96.9 0.001 2.2E-08 45.6 3.3 22 12-33 28-49 (213)
464 TIGR02673 FtsE cell division A 96.9 0.001 2.2E-08 45.7 3.2 22 12-33 30-51 (214)
465 cd03260 ABC_PstB_phosphate_tra 96.9 0.001 2.2E-08 46.1 3.3 23 12-34 28-50 (227)
466 cd02027 APSK Adenosine 5'-phos 96.9 0.001 2.2E-08 43.4 3.1 21 13-33 2-22 (149)
467 cd03259 ABC_Carb_Solutes_like 96.9 0.001 2.2E-08 45.7 3.3 22 12-33 28-49 (213)
468 cd02038 FleN-like FleN is a me 96.9 0.003 6.4E-08 40.7 5.2 90 15-111 5-94 (139)
469 COG3638 ABC-type phosphate/pho 96.9 0.00091 2E-08 46.9 2.9 21 12-32 32-52 (258)
470 TIGR03608 L_ocin_972_ABC putat 96.9 0.0011 2.3E-08 45.3 3.3 22 12-33 26-47 (206)
471 cd02028 UMPK_like Uridine mono 96.9 0.001 2.2E-08 44.7 3.1 21 13-33 2-22 (179)
472 PRK00131 aroK shikimate kinase 96.9 0.0011 2.4E-08 43.7 3.2 24 10-33 4-27 (175)
473 cd03293 ABC_NrtD_SsuB_transpor 96.9 0.0011 2.3E-08 45.8 3.3 22 12-33 32-53 (220)
474 PRK07429 phosphoribulokinase; 96.9 0.0015 3.2E-08 48.1 4.1 26 8-33 6-31 (327)
475 TIGR02211 LolD_lipo_ex lipopro 96.9 0.0011 2.4E-08 45.7 3.3 22 12-33 33-54 (221)
476 PRK13833 conjugal transfer pro 96.9 0.004 8.7E-08 45.8 6.3 24 10-33 144-167 (323)
477 cd03116 MobB Molybdenum is an 96.9 0.0011 2.4E-08 43.8 3.1 22 12-33 3-24 (159)
478 PRK13541 cytochrome c biogenes 96.9 0.0015 3.3E-08 44.3 3.9 23 12-34 28-50 (195)
479 PF00625 Guanylate_kin: Guanyl 96.9 0.0011 2.4E-08 44.5 3.2 22 12-33 4-25 (183)
480 cd03218 ABC_YhbG The ABC trans 96.9 0.0011 2.4E-08 46.1 3.2 22 12-33 28-49 (232)
481 cd01672 TMPK Thymidine monopho 96.9 0.0011 2.3E-08 44.6 3.1 20 13-32 3-22 (200)
482 cd03256 ABC_PhnC_transporter A 96.9 0.001 2.2E-08 46.5 3.0 22 12-33 29-50 (241)
483 cd03266 ABC_NatA_sodium_export 96.9 0.0011 2.5E-08 45.6 3.2 22 12-33 33-54 (218)
484 PRK14526 adenylate kinase; Pro 96.9 0.0012 2.6E-08 45.6 3.3 21 12-32 2-22 (211)
485 cd03219 ABC_Mj1267_LivG_branch 96.9 0.001 2.3E-08 46.3 3.1 22 12-33 28-49 (236)
486 PRK09270 nucleoside triphospha 96.9 0.0014 3.1E-08 45.7 3.7 25 8-32 31-55 (229)
487 cd03263 ABC_subfamily_A The AB 96.9 0.0011 2.3E-08 45.8 3.0 22 12-33 30-51 (220)
488 TIGR01526 nadR_NMN_Atrans nico 96.9 0.0011 2.5E-08 48.7 3.3 23 11-33 163-185 (325)
489 PRK15177 Vi polysaccharide exp 96.9 0.0014 3E-08 45.2 3.6 23 12-34 15-37 (213)
490 cd03229 ABC_Class3 This class 96.9 0.0012 2.7E-08 44.1 3.3 22 12-33 28-49 (178)
491 COG3276 SelB Selenocysteine-sp 96.9 0.004 8.7E-08 47.1 6.2 111 13-126 3-117 (447)
492 cd03257 ABC_NikE_OppD_transpor 96.9 0.0011 2.5E-08 45.8 3.2 22 12-33 33-54 (228)
493 cd03258 ABC_MetN_methionine_tr 96.9 0.0012 2.6E-08 46.0 3.3 22 12-33 33-54 (233)
494 PRK11248 tauB taurine transpor 96.8 0.0012 2.5E-08 46.9 3.3 22 12-33 29-50 (255)
495 cd03235 ABC_Metallic_Cations A 96.8 0.0011 2.4E-08 45.5 3.0 22 12-33 27-48 (213)
496 COG4619 ABC-type uncharacteriz 96.8 0.0012 2.5E-08 44.4 2.9 22 12-33 31-52 (223)
497 PRK04040 adenylate kinase; Pro 96.8 0.0013 2.8E-08 44.7 3.2 23 11-33 3-25 (188)
498 cd02024 NRK1 Nicotinamide ribo 96.8 0.0012 2.6E-08 44.8 3.1 21 13-33 2-22 (187)
499 PRK11629 lolD lipoprotein tran 96.8 0.0012 2.7E-08 45.9 3.3 22 12-33 37-58 (233)
500 TIGR00176 mobB molybdopterin-g 96.8 0.0013 2.7E-08 43.3 3.1 21 13-33 2-22 (155)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-32 Score=181.02 Aligned_cols=120 Identities=42% Similarity=0.715 Sum_probs=113.2
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
....+.+||+++|++|||||+|..||..+.|.+++..|+|.++..+.+.+++..+++++|||+||++|+.....+++.+|
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhCC-Ccccccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQGI-HIQSLLQRFFS 124 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~~ 124 (133)
|||+|||+++.+||+.+..|+.++.++.. ++|.+|+++.+
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~ 124 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKC 124 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeecc
Confidence 99999999999999999999999999875 55888888765
No 2
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=161.55 Aligned_cols=119 Identities=39% Similarity=0.681 Sum_probs=113.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+|.+|+|+++||||||+.+|..+.|+.+|..++|.++..+++.+++..+++++||+.|+++|+.+...+++..|+++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCccccccccccce
Q 032789 88 IVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSCI 126 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 126 (133)
+|||+++.+||.++++|+++++.+++.+|.+|+++.+..
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~ 124 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDD 124 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCC
Confidence 999999999999999999999999999999999987654
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-28 Score=163.24 Aligned_cols=121 Identities=41% Similarity=0.707 Sum_probs=110.3
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 032789 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82 (133)
Q Consensus 3 ~~~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 82 (133)
..+..-+.+|++++|+.+|||||||.|+..++|...|.+++|.++-.+++.+.+..+++++|||.||++|+.+.+.++++
T Consensus 15 ~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd 94 (221)
T KOG0094|consen 15 TFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 94 (221)
T ss_pred ccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence 34455567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHHHhC-C-Cccccccccc
Q 032789 83 AAAAIIVYDITNQASFERAKKWVQELQAQG-I-HIQSLLQRFF 123 (133)
Q Consensus 83 ~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~-~~~~~l~~~~ 123 (133)
+.++|+|||++|..||++...|++.+++.. + ++.++|+++.
T Consensus 95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnK 137 (221)
T KOG0094|consen 95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNK 137 (221)
T ss_pred CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccc
Confidence 999999999999999999999999998765 3 3566666653
No 4
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-28 Score=162.46 Aligned_cols=118 Identities=36% Similarity=0.675 Sum_probs=112.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
+...+|++++|+.|||||+|+.||+.+.|.+.+..|+|.++..+.+.+++..+++++||+.|++.|+.....+++.+.+.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFS 124 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~ 124 (133)
++|||+++++||..+..|++.++++. +|..++|.++.+
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKs 121 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKS 121 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchh
Confidence 99999999999999999999999994 888888887754
No 5
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.6e-28 Score=160.78 Aligned_cols=117 Identities=66% Similarity=0.976 Sum_probs=107.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+|++++|+.+||||||+.|+..++|.+...+++|..+..+.+..++..+++.+|||.|+++|..+.+.+++++++.
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 35689999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCC-Cccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGI-HIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~ 123 (133)
|+|||+++.+||..++.|+.+++++.+ ++.+-|.++.
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK 119 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNK 119 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecch
Confidence 999999999999999999999999875 4555555543
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=9.7e-28 Score=162.63 Aligned_cols=119 Identities=28% Similarity=0.514 Sum_probs=109.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+.+||||||++++..+.+..++.++.+.++....+..++..+.+++||++|+++|..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999999999888888888888778888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
|+|||+++++||++++.|++++.++.+++|++|+++...
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~D 121 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLH 121 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 999999999999999999999998889999999887654
No 7
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=1.5e-27 Score=160.89 Aligned_cols=118 Identities=27% Similarity=0.526 Sum_probs=107.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
++..+||+++|+++||||||++++..+.|.+++.++.+..+ ...+.+++..+.+++||++|+++|...+..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 45788999999999999999999999999998999998665 45677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhCCCccccccccccc
Q 032789 87 IIVYDITNQASFERA-KKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 87 v~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
++|||+++++||+++ ..|++.+.+..++.|++|+++...
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~D 120 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 120 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChh
Confidence 999999999999997 799999999989999998877544
No 8
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.5e-28 Score=161.28 Aligned_cols=120 Identities=38% Similarity=0.687 Sum_probs=114.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+..+.+||+++|+++||||+++.+|..+.|...+..++|+++..+++..++..+.+++||+.||++|......+++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCC-Cccccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQGI-HIQSLLQRFFSC 125 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~~~ 125 (133)
+++|||++++.||+.+..|+..|.++.+ ++|++|+++...
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCD 128 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccc
Confidence 9999999999999999999999999986 889999887654
No 9
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=3e-27 Score=158.85 Aligned_cols=115 Identities=26% Similarity=0.535 Sum_probs=104.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
++||+++|+++||||||++++..+.+...+.++.+..+ ...+.+++..+.+++||++|++++......+++.+|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 57999999999999999999999999988989987765 45677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHHhCCCccccccccccc
Q 032789 90 YDITNQASFERA-KKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 90 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
||+++++||+++ ..|++.++++.++.|++++++...
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~D 116 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTD 116 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChh
Confidence 999999999996 799999999999999998887654
No 10
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=6e-27 Score=157.14 Aligned_cols=114 Identities=32% Similarity=0.557 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||+.++..+.|..++.++.+..+ ...+.+++..+++.+||++|++++...+..+++.+|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999988999998765 456777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhCCCccccccccccc
Q 032789 91 DITNQASFERA-KKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 91 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
|+++++||+++ +.|+..+.+..++.|+++.++...
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~D 116 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLD 116 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChh
Confidence 99999999998 689999988888999999886543
No 11
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-27 Score=159.15 Aligned_cols=122 Identities=42% Similarity=0.709 Sum_probs=115.7
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
....+.+||+++|+++||||-|+.|+..+.|..+..+++|.++..+.+.++++.++.++|||.||++|++....+++.+.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccccce
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFSCI 126 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~~ 126 (133)
+.++|||++++.+|+.+..|+.++++|. ++++++|+++.+..
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL 131 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDL 131 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhh
Confidence 9999999999999999999999999998 88999999887643
No 12
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=6.7e-27 Score=151.02 Aligned_cols=120 Identities=39% Similarity=0.708 Sum_probs=110.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|++|||||||+.+|..+.|.+..+.++|.++..+.+.+++..+++.+||+.|+++|+.+...+++.+.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 34567999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC--CCccccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFFSC 125 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~~~ 125 (133)
+|+|||++.+++|..+..|++++..++ +++..+++++...
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiD 128 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKID 128 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhccccc
Confidence 999999999999999999999998875 5666666665443
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.95 E-value=9.4e-27 Score=159.24 Aligned_cols=115 Identities=34% Similarity=0.633 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+.|+++|++|||||||++++..+.|.+.+.++.+.++..+.+.+++..+.+++||++|+++|...+..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999989899998888888889888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC-CCccccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
|+++++||++++.|+..+.+.. ++.|+++.++...
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~D 116 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 116 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 9999999999999999997764 5788888776543
No 14
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=1.6e-26 Score=156.76 Aligned_cols=116 Identities=29% Similarity=0.466 Sum_probs=104.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|+++||||||++++..+.|.+.+.++.+..+ ...+.+++..+.+++||++|+++|...+..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 358999999999999999999999999888999998655 4456678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhCCCccccccccccc
Q 032789 89 VYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
|||+++++||+++. .|++.+.++.++.|++++++...
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~D 118 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKD 118 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChh
Confidence 99999999999997 69999988888899998887654
No 15
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=2e-26 Score=159.48 Aligned_cols=120 Identities=31% Similarity=0.493 Sum_probs=109.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|++|||||||++++..+++...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 34678999999999999999999999999998899999988887777777778999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+|+|||+++++||+.+..|+..+.+..++.|+++.++...
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~D 128 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchh
Confidence 9999999999999999999999998888899988877543
No 16
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=4.5e-26 Score=158.62 Aligned_cols=119 Identities=25% Similarity=0.465 Sum_probs=106.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
....++||+++|+++||||||++++..+.|..++.++++.++ ...+..++..+.+.+||++|+++|......+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 344788999999999999999999999999999999998766 4457788889999999999999999888999999999
Q ss_pred EEEEEECCChhhHHH-HHHHHHHHHHhCCCccccccccccc
Q 032789 86 AIIVYDITNQASFER-AKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 86 iv~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+++|||+++++||+. +..|++.+.+..++.|++|+++...
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~D 128 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTD 128 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 999999999999998 4899999998888899888877554
No 17
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.94 E-value=6.5e-26 Score=151.90 Aligned_cols=114 Identities=26% Similarity=0.451 Sum_probs=102.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
.+||+++|+++||||||++++..+.|.+.+.++.+..+. ..+..++..+.+.+||++|++++...+..+++.+|++++|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998889899887653 4566778889999999999999999989999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhCCCcccccccccc
Q 032789 90 YDITNQASFERAK-KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
||+++++||+++. .|+..+.++.++.|+++.++..
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~ 115 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 115 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECH
Confidence 9999999999997 6999998888888998887743
No 18
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=3.2e-26 Score=158.52 Aligned_cols=115 Identities=23% Similarity=0.470 Sum_probs=104.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
++||+++|+++||||||+++|..+.|.+.+.++.+.++. ..+.+++..+.+.+||++|++.|...+..+++.+|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999999999999987654 5677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHHhCCCccccccccccc
Q 032789 90 YDITNQASFERA-KKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 90 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
||+++++||+++ ..|...+.+..++.|++|+++...
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~D 116 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLD 116 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcc
Confidence 999999999998 579999988889999999887654
No 19
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.94 E-value=5.7e-26 Score=153.14 Aligned_cols=112 Identities=28% Similarity=0.584 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++..+.+.+.+.++.+.++..+.+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999889999998888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCcccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~ 122 (133)
|+++++||+++..|++.+.+..+..+.++.++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgn 112 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGT 112 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 99999999999999999988655433244444
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=9e-26 Score=149.57 Aligned_cols=114 Identities=35% Similarity=0.655 Sum_probs=102.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
.+||+++|+++||||||++++..+++.+.+.++.+.++....+..++..+++.+||++|++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999999888888888888777788888889999999999999999889999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
||+++++||+.+..|++.+.... ++.|+++.++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK 116 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNK 116 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 99999999999999999987754 56777776654
No 21
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.94 E-value=5.7e-26 Score=149.62 Aligned_cols=113 Identities=42% Similarity=0.740 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
||+++|+++||||||++++.++.+.+.+.++.+.+.....+..++..+.+.+||++|++++...+..+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCC-Ccccccccccc
Q 032789 92 ITNQASFERAKKWVQELQAQGI-HIQSLLQRFFS 124 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~~ 124 (133)
+++++||+++..|++.+....+ +.|+++.+...
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~ 114 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKS 114 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETT
T ss_pred ccccccccccccccccccccccccccceeeeccc
Confidence 9999999999999999999988 68888887654
No 22
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.94 E-value=1.1e-25 Score=153.62 Aligned_cols=116 Identities=41% Similarity=0.710 Sum_probs=105.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999998888899988887788888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
+|||+++++||+++..|++.+....+..|+++.++.
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK 119 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNK 119 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 999999999999999999999988888888777654
No 23
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=8e-26 Score=154.58 Aligned_cols=115 Identities=27% Similarity=0.406 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC-----CeEEEEEEEeCCCcccccccccccccccCE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-----DATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+||+++|+++||||||++++..+.+.+.+.++++.++..+.+.++ +..+.+++||++|++++...+..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999998888999987777766663 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC--------------------CCccccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG--------------------IHIQSLLQRFFSC 125 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~--------------------~~~~~~l~~~~~~ 125 (133)
+|+|||+++++||++++.|+.++.++. +++|++++++...
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~D 140 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLD 140 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECcc
Confidence 999999999999999999999997642 4678888877544
No 24
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=1.8e-25 Score=147.62 Aligned_cols=115 Identities=32% Similarity=0.566 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++..+.+.+.+.++.+.+........++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998877777777776667777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
|++++.++++++.|+..+.+..++.|+++.++...
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~D 115 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKID 115 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECcc
Confidence 99999999999999999988878888887776544
No 25
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=2.1e-25 Score=152.27 Aligned_cols=115 Identities=37% Similarity=0.705 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
+||+++|++|||||||++++..+.+...+.++.+.++....+.++ +..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988888999988877777777 7789999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-----CCccccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQG-----IHIQSLLQRFFSC 125 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~~l~~~~~~ 125 (133)
||+++++||+++..|+..+.+.. .+.|+++.++...
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~D 121 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCD 121 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCC
Confidence 99999999999999999987642 5678877766544
No 26
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.94 E-value=1.7e-25 Score=148.39 Aligned_cols=115 Identities=40% Similarity=0.725 Sum_probs=103.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|+++||||||++++.++++...+.++.+.++....+..++..+.+++||++|++++...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999999899999988887888888888999999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
|||++++++|++++.|+..+.+.. .+.|+++.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK 117 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNK 117 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 999999999999999999998865 45677766643
No 27
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.93 E-value=4.7e-25 Score=146.49 Aligned_cols=114 Identities=32% Similarity=0.594 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888889888877777777778899999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|+++++||+.+..|+..+.+...+.|+++.++..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~ 114 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKV 114 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEch
Confidence 9999999999999999999888788888766543
No 28
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.9e-26 Score=143.72 Aligned_cols=119 Identities=34% Similarity=0.629 Sum_probs=109.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
-....|+.++|++.|||||++.++++..|...+-++.|+++..+++.-....+++++||+.|+++|+.....++++++++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 34577999999999999999999999999999999999999999888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
+++||+++++||..++.|...|...+ .++|+++.+..+.
T Consensus 98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCD 137 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCD 137 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccC
Confidence 99999999999999999999998876 5778777765543
No 29
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=3.1e-25 Score=146.91 Aligned_cols=113 Identities=38% Similarity=0.679 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++.++++...+.++.+.++....+..++..+.+.+||++|++++...+...++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888899988877777777777899999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
|++++++|+++..|++.+.+.. ++.|+++.++.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 115 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 115 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEEC
Confidence 9999999999999999998766 35666666653
No 30
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.93 E-value=4.4e-25 Score=147.78 Aligned_cols=113 Identities=28% Similarity=0.488 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||+.++..+.+.+++.++.+. .....+..++..+.+.+||++|++++...+..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 69999999999999999999999998888888864 34456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCcccccccccc
Q 032789 91 DITNQASFERAK-KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|+++++||+++. .|+..+..+.++.|+++.++..
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~ 115 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 115 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeCh
Confidence 999999999996 6999998888889999887754
No 31
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=4.1e-25 Score=146.01 Aligned_cols=114 Identities=38% Similarity=0.696 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999999888899998887788888888899999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCC-Ccccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQGI-HIQSLLQRFFS 124 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~~ 124 (133)
|+++++||+++..|++.+.+..+ +.|+++.++..
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~ 115 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKA 115 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 99999999999999999987765 57777776554
No 32
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.93 E-value=4e-25 Score=147.44 Aligned_cols=112 Identities=35% Similarity=0.657 Sum_probs=100.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
||+++|+++||||||++++..+.+..++.++.+.++....+.+++..+.+++||++|++++...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 89999999999999999999999999999999988887888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-CC-Cccccccccc
Q 032789 92 ITNQASFERAKKWVQELQAQ-GI-HIQSLLQRFF 123 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~-~~-~~~~~l~~~~ 123 (133)
++++++|+.+..|++.+.++ .+ +.|++++++.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK 115 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTK 115 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 99999999999999998665 34 3455555544
No 33
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.93 E-value=4.4e-25 Score=146.09 Aligned_cols=114 Identities=45% Similarity=0.764 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
.+||+++|++|||||||++++.++++...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999998888888888888878888888889999999999999988889999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
||+++++||+++..|+..+.+.. ++.|+++.++.
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK 116 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 116 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 99999999999999999998765 56777766554
No 34
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=3.7e-25 Score=148.17 Aligned_cols=114 Identities=30% Similarity=0.599 Sum_probs=100.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC----------CeEEEEEEEeCCCcccccccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----------DATVKFEIWDTAGQERYHSLAPM 78 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~d~~g~~~~~~~~~~ 78 (133)
+.+||+++|+++||||||++++..+++.+.+.++.+.++....+.+. +..+.+.+||++|++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999999999888999888776666554 35688999999999999999999
Q ss_pred cccccCEEEEEEECCChhhHHHHHHHHHHHHHhC--CCcccccccc
Q 032789 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRF 122 (133)
Q Consensus 79 ~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~ 122 (133)
+++++|++++|||+++++||+.+..|+..+.++. ++.|+++.++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 9999999999999999999999999999998753 5666666554
No 35
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=148.19 Aligned_cols=118 Identities=38% Similarity=0.693 Sum_probs=108.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
+...+||+++|++|||||||++++..++|+..+..++|.++..+++.+++..+.+++|||+|+++|.++...+++.+|..
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCC-----Ccccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGI-----HIQSLLQRFFS 124 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~~~l~~~~~ 124 (133)
++|||+++++||+.+..|..++..+.. .-|.++.++..
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKi 128 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKI 128 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccc
Confidence 999999999999999999999977642 33777777654
No 36
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.93 E-value=4.5e-25 Score=145.59 Aligned_cols=114 Identities=25% Similarity=0.563 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||+++++++++...+.++.+.++....+..++..+.+++||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999999889999999888888888888899999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCC------Ccccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQGI------HIQSLLQRFFS 124 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~------~~~~~l~~~~~ 124 (133)
|++++++|+.+..|+..+.+... +.|+++.++..
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 120 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEch
Confidence 99999999999999999987653 46666655443
No 37
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.93 E-value=5.4e-25 Score=144.85 Aligned_cols=114 Identities=36% Similarity=0.675 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC--CeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--DATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
+||+++|+++||||||++++..+.+.+.+.++.+.++....+.+. +..+.+++||++|++++...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999999988888899888877777776 777899999999999999988999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|||++++++|+.+..|+..+.+..++.|+++.++..
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~ 116 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKI 116 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 999999999999999999998888888887766543
No 38
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.93 E-value=8.6e-25 Score=144.48 Aligned_cols=115 Identities=42% Similarity=0.749 Sum_probs=103.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|+++||||||++++.++++...+.++.+.++....+..++..+.+.+||++|++++...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999999888888899888888888888888899999999999998888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCC-ccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQGIH-IQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~l~~~~ 123 (133)
|||++++.+|+++.+|+..+.+..+. .|+++.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK 117 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNK 117 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 99999999999999999999887764 677665543
No 39
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=8.9e-25 Score=144.57 Aligned_cols=115 Identities=43% Similarity=0.729 Sum_probs=102.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
+.+||+++|++|||||||++++..+.+..++.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999988888888887777888888877899999999999998888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
|||++++++|++++.|+..+..+. ++.|+++.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 117 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNK 117 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 999999999999999999998764 56676666543
No 40
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.93 E-value=1.3e-24 Score=144.26 Aligned_cols=117 Identities=34% Similarity=0.585 Sum_probs=103.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
++..+||+++|+++||||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45779999999999999999999999999887888888887777888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-----CCccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG-----IHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~~l~~~~ 123 (133)
++|||+++++||+.+..|+..+.+.. .+.|+++.++.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 123 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNK 123 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 99999999999999999999887643 35677766554
No 41
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.93 E-value=1.2e-24 Score=143.23 Aligned_cols=113 Identities=44% Similarity=0.736 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++.++++...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888889999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
|++++++|+++..|+..++... ++.|+++.++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK 114 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNK 114 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence 9999999999999999987654 67787766553
No 42
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=2e-24 Score=146.19 Aligned_cols=113 Identities=27% Similarity=0.542 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
.||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3899999999999999999999999888888887665 345566777789999999999999888888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCcccccccccc
Q 032789 91 DITNQASFERAK-KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|+++++||+.+. .|+..+.++.++.|++++++..
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~ 114 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKC 114 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 999999999987 6999999888888888887653
No 43
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=1.4e-24 Score=156.16 Aligned_cols=121 Identities=27% Similarity=0.473 Sum_probs=105.3
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECC-------------eEEEEEEEeCCCccc
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-------------ATVKFEIWDTAGQER 71 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~d~~g~~~ 71 (133)
.++...+||+++|+.+||||||++++..+.+...+.+++|.++..+.+.+++ ..+.+++||++|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 3566789999999999999999999999999888889999888777676642 468899999999999
Q ss_pred ccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-------------CCccccccccccc
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-------------IHIQSLLQRFFSC 125 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~~~~l~~~~~~ 125 (133)
|...+..++++++++|+|||+++++||+++..|++.+.++. .++|++|+++...
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 99999999999999999999999999999999999998763 1467777766543
No 44
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.93 E-value=1.3e-24 Score=145.23 Aligned_cols=115 Identities=27% Similarity=0.475 Sum_probs=100.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
.+||+++|++|||||||++++..+++...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999888888887544 45567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh--CCCccccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFFSC 125 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~~ 125 (133)
||+++++||+.+.+|...+.+. .++.|+++.++...
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~D 118 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVD 118 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 9999999999999999888764 35788888776543
No 45
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.93 E-value=1.6e-24 Score=143.91 Aligned_cols=115 Identities=35% Similarity=0.695 Sum_probs=103.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|+++||||||++++.++++...+.++.+.++....+..++....+.+||++|++++......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999999888888888888888888888888899999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
|||+++++||+.+..|++.++++. ++.|+++.++.
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK 118 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNK 118 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 999999999999999999998754 67787777654
No 46
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.93 E-value=2.2e-24 Score=146.16 Aligned_cols=114 Identities=47% Similarity=0.773 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
+||+++|+++||||||++++..+++.. .+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999998874 6778888888777888888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
||++++++|+++..|++.++...++.|+++.++..
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~ 115 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKS 115 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcc
Confidence 99999999999999999998877777777766544
No 47
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5e-25 Score=141.03 Aligned_cols=118 Identities=41% Similarity=0.693 Sum_probs=107.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|+.|||||+|++++..+-|++....++|.++..+++.+++.++++++||+.|+++|+...+.+++.+|+
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
+++|||++=.+||+-+.+|+.+|.++. ..+..+++++.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk 121 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNK 121 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccc
Confidence 999999999999999999999998875 34455555543
No 48
>PLN03110 Rab GTPase; Provisional
Probab=99.93 E-value=2.2e-24 Score=148.89 Aligned_cols=118 Identities=42% Similarity=0.752 Sum_probs=106.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++.++.+..++.++.+.++....+.+++..+.+++||++|++++...+..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 44678999999999999999999999999888889999998888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFS 124 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~ 124 (133)
++|||++++++|+.+..|+..+.+.. .+.|+++.++..
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~ 127 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKS 127 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEECh
Confidence 99999999999999999999998875 467777766543
No 49
>PTZ00369 Ras-like protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=146.80 Aligned_cols=115 Identities=29% Similarity=0.504 Sum_probs=100.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++++...+..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3568999999999999999999999998888888887655 556777888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
+|||++++++|+++..|+..+.+.. ++.|+++.++.
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 119 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNK 119 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 9999999999999999999997764 46677666543
No 50
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.92 E-value=1.8e-24 Score=142.71 Aligned_cols=114 Identities=32% Similarity=0.535 Sum_probs=98.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
++||+++|++|||||||++++..+.+.+.+.++.+ ++....+..++....+++||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999887777765 44556777788788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC--CCcccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQG--IHIQSLLQRFFS 124 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~~ 124 (133)
||+++++||+++..|+..+.+.. .+.|+++.++..
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 99999999999999999998753 567777666543
No 51
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.92 E-value=2.2e-24 Score=143.54 Aligned_cols=115 Identities=37% Similarity=0.686 Sum_probs=101.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccc-ccccccccccCEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAAAAII 88 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~-~~~~~~~~~~~~iv~ 88 (133)
.+||+++|++|||||||++++..+.+...+.++.+.++..+.+..++..+.+.+||++|++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999999988888888888888888888888999999999999886 467888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC--CCcccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFFS 124 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~~ 124 (133)
|||++++++|+.+..|++.+.... .+.|+++.++..
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 119 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKC 119 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 999999999999999999998764 567777766543
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.92 E-value=1.7e-24 Score=142.48 Aligned_cols=113 Identities=29% Similarity=0.509 Sum_probs=98.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
.+||+++|++|||||||++++..+.+...+.++.+ +.....+..++..+.+.+||++|++++...+..+++.+|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999998887777776 34456677788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
||++++++|+++..|+..+.+.. ++.|+++.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 115 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNK 115 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 99999999999999999997653 56777766554
No 53
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.92 E-value=1.2e-24 Score=148.57 Aligned_cols=110 Identities=29% Similarity=0.547 Sum_probs=102.1
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEECCCh
Q 032789 16 LGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ 95 (133)
Q Consensus 16 ~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~ 95 (133)
+|+++||||||++++..+.+.+.+.++.+.++....+..++..+++.+||++|+++|..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888889999888888888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 96 ASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 96 ~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+||+.++.|++++.+..+++|+++.++...
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~D 110 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVD 110 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 999999999999999888999998887544
No 54
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.92 E-value=2.1e-24 Score=141.87 Aligned_cols=114 Identities=40% Similarity=0.736 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++.+.++...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888889988888888888887789999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCC-Ccccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQGI-HIQSLLQRFFS 124 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~~ 124 (133)
|++++++|+++..|++.+.+..+ +.|+++.++..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~ 115 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKT 115 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEECh
Confidence 99999999999999999976654 57777776643
No 55
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=2.5e-24 Score=145.12 Aligned_cols=114 Identities=27% Similarity=0.526 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
+||+++|+++||||||++++.++.+...+.++.+.++.. .+... +..+.+.+||++|++++...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 489999999999999999999999988888888776543 34444 6678999999999999988888899999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhCCCccccccccccc
Q 032789 90 YDITNQASFERAK-KWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
||+++++||+++. .|+..+....++.|+++.++...
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 116 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTD 116 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChh
Confidence 9999999999986 69999988788888888776543
No 56
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=3e-24 Score=145.05 Aligned_cols=113 Identities=42% Similarity=0.727 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878899998887788888888899999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCC-Cccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQGI-HIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~ 123 (133)
|++++++|+++..|+..+.+..+ +.|+++.++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK 114 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANK 114 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 99999999999999999987653 4566665544
No 57
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=2.8e-24 Score=148.23 Aligned_cols=113 Identities=34% Similarity=0.504 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
+||+++|+++||||||+++|..+.+...+.++.+.++..+.+.+++ ..+.+++||++|++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999988999999888888787754 578999999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhCC----Cccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQGI----HIQSLLQRFF 123 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~l~~~~ 123 (133)
||+++++||+++..|+..+.+... +.|++++++.
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK 118 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNK 118 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEEC
Confidence 999999999999999999987653 3455555443
No 58
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.1e-25 Score=140.53 Aligned_cols=118 Identities=38% Similarity=0.660 Sum_probs=108.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+|++++|+.|.|||+|+++|+.++|......++|.++.++.+.+.++.+++++||+.|+++|+...+.+++.+.+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45678899999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
.++|||+++++||+++..|+..++.-. +++.+++.+..
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnK 123 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNK 123 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCCh
Confidence 999999999999999999999998875 45555555543
No 59
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.92 E-value=5.7e-24 Score=140.10 Aligned_cols=113 Identities=69% Similarity=1.009 Sum_probs=101.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
++||+++|+++||||||++++.++++...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998887888888888888888888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
||.+++++|+.+..|+..+..+. ++.|+++..+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~n 114 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGN 114 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999999999999998876 5666666544
No 60
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.92 E-value=4.7e-24 Score=140.88 Aligned_cols=114 Identities=29% Similarity=0.516 Sum_probs=99.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
.+||+++|++|||||||++++..+.+.+.+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999999988887878877554 45677778789999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh--CCCcccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFFS 124 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~ 124 (133)
||++++++|+++..|+..+.+. .++.|+++.++..
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 116 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 116 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 9999999999999999999764 3677877766543
No 61
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.92 E-value=7.5e-24 Score=139.46 Aligned_cols=114 Identities=48% Similarity=0.813 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++.+.++...+.++.+.++....+..++..+.+.+||++|++++......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988878888888888888888888889999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC-CCcccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG-IHIQSLLQRFFS 124 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~ 124 (133)
|++++++++.+..|+..+..+. ++.|+++..+..
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~ 115 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKS 115 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEch
Confidence 9999999999999999998776 677777766543
No 62
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.92 E-value=1.4e-23 Score=140.01 Aligned_cols=113 Identities=26% Similarity=0.480 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+|++++|++|||||||++++..+.+..++.++. .+.....+..++..+.+.+||++|++++...+..+++.+|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999999988887776 3445556777887899999999999999999899999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCcccccccccc
Q 032789 91 DITNQASFERAK-KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|+++++||+++. .|+..+.+..++.|+++.++..
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~ 114 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQA 114 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeCh
Confidence 999999999985 7999998777778887777654
No 63
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=7e-24 Score=145.99 Aligned_cols=113 Identities=37% Similarity=0.749 Sum_probs=98.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEE-CCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
.+||+++|+++||||||++++.++++...+.++.+.++..+.+.. ++..+.+++||++|++++...+..+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998888888888887777776 4567899999999999999888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCC--Ccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQGI--HIQSLLQRF 122 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~l~~~ 122 (133)
|||+++++||+++..|+..+.+... ..|+++.++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgN 117 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGH 117 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 9999999999999999999987642 345555443
No 64
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.92 E-value=7.1e-24 Score=139.86 Aligned_cols=114 Identities=31% Similarity=0.549 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCCCcccCceeeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
+||+++|+++||||||++++..+ .+..++.++.+.++....+..+ +..+++.+||++|++.+...+..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777888889888777766664 56789999999999998888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+|||++++++|+++..|++.+.+..++.|+++.++..
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~ 117 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKM 117 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECc
Confidence 9999999999999999999998877777877766554
No 65
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.92 E-value=1.3e-23 Score=139.97 Aligned_cols=112 Identities=30% Similarity=0.511 Sum_probs=98.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEEC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI 92 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~ 92 (133)
|+++|+++||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++...+...++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999999888877776544 45566778888999999999999998999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhCCCccccccccccc
Q 032789 93 TNQASFERAK-KWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 93 ~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
++++||+.+. .|+..+.++.++.|+++.++...
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 113 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLD 113 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChh
Confidence 9999999996 69999998888999988776543
No 66
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=9.2e-24 Score=143.16 Aligned_cols=114 Identities=39% Similarity=0.729 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
+||+++|++|||||||++++..+.+.. .+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998863 5677888777777778888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhCC-Ccccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQGI-HIQSLLQRFFS 124 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~~ 124 (133)
||++++++|+++..|+..+.+..+ +.|+++.++..
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 999999999999999999988764 56776665443
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.91 E-value=1.1e-23 Score=138.26 Aligned_cols=113 Identities=26% Similarity=0.483 Sum_probs=97.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
++||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++...+..+++.++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999999998888877776543 55567777778899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
||++++++|+++..|+..+.+.. .+.|+++.++.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK 115 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNK 115 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 99999999999999999998763 46676665543
No 68
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.91 E-value=1.4e-24 Score=146.06 Aligned_cols=115 Identities=28% Similarity=0.520 Sum_probs=105.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEE-CCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
...+|++++|+..||||+++..+..+.|..+|.++... -+...+.+ ++..+.+.+|||.|+++|.+.+...++++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFd-nys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFD-NYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEc-cceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 46789999999999999999999999999999999974 45666777 48999999999999999999888899999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhCCCccccccccc
Q 032789 87 IIVYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~ 123 (133)
++||++.+++||++++ .|++++.+++|++|++|+++-
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk 118 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTK 118 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeeh
Confidence 9999999999999976 899999999999999999854
No 69
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.91 E-value=6.4e-24 Score=143.83 Aligned_cols=111 Identities=31% Similarity=0.560 Sum_probs=96.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
||+++|++|||||||+++|..+.+...+.++.+..+ ...+..++..+.+++||++|++++...+..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999999887878877554 4456677777899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC----CCccccccccc
Q 032789 92 ITNQASFERAKKWVQELQAQG----IHIQSLLQRFF 123 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~----~~~~~~l~~~~ 123 (133)
+++++||+.+..|+..+.+.. ++.|+++.++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK 115 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNK 115 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEC
Confidence 999999999999999987653 46777776644
No 70
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=2.4e-23 Score=138.67 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=100.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
.+.+||+++|++|||||||++++..+.+. .++.++.+.++....+..++....+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45789999999999999999999999998 88889988877777777888788999999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
++|||++++++|+.+..|+..+... .+.|+++.++..
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~ 118 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKA 118 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcc
Confidence 9999999999999999999877432 356666655543
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.91 E-value=2.3e-23 Score=137.92 Aligned_cols=113 Identities=30% Similarity=0.422 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|++|||||||++++..+.+...+.++.+..+ ...+..+...+.+.+||++|++++...+...++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998887777776544 445556667789999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC----CCcccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG----IHIQSLLQRFFS 124 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~----~~~~~~l~~~~~ 124 (133)
|+++++||++++.|++.+.+.. ++.|+++.++..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 118 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKC 118 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECc
Confidence 9999999999999998887643 567777766543
No 72
>PLN03108 Rab family protein; Provisional
Probab=99.91 E-value=3.7e-23 Score=142.23 Aligned_cols=115 Identities=35% Similarity=0.703 Sum_probs=102.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|+++||||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 56999999999999999999999999988888889888888888888888899999999999998888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
|||++++++|+.+..|+..+.+.. ++.|+++.++.
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK 120 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 999999999999999999887654 56677766653
No 73
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=2.1e-23 Score=146.65 Aligned_cols=112 Identities=22% Similarity=0.417 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++..+.+...+.++.+ ++....+.+++..+.+.+||++|++.|...+...+..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999887878776 456667778888899999999999998888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh----------CCCccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQ----------GIHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~----------~~~~~~~l~~~~ 123 (133)
|+++++||+++..|++++.+. ..+.|+++.++.
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK 122 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNK 122 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEEC
Confidence 999999999999999999753 245676666554
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.91 E-value=4.5e-23 Score=140.73 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMYYRG 82 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~--------~~~~~~~ 82 (133)
+||+++|+++||||||++++..+.+...+.++.+.+.....+..++..+.+++||++|.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888888876666666777888899999999997654321 2234789
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHHHhC----CCcccccccccc
Q 032789 83 AAAAIIVYDITNQASFERAKKWVQELQAQG----IHIQSLLQRFFS 124 (133)
Q Consensus 83 ~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~~l~~~~~ 124 (133)
+|++++|||+++++||+.+..|++.+.+.. ++.|+++.++..
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~ 126 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKR 126 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECc
Confidence 999999999999999999999999998763 567888777643
No 75
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=6.3e-23 Score=141.39 Aligned_cols=119 Identities=29% Similarity=0.507 Sum_probs=106.2
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
+.+...+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++++...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 55667799999999999999999999999888889999998888877777888899999999999999888888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
++++|||++++.+|+.+..|+..+.+...+.|+++.++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK 122 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNK 122 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 999999999999999999999999887777777665543
No 76
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.91 E-value=6.3e-23 Score=134.95 Aligned_cols=112 Identities=44% Similarity=0.755 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++.+.++...+.++.+.++....+.+++..+.+.+||++|++.+...+...++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888778888888877777777777889999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC--CCcccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG--IHIQSLLQRF 122 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~ 122 (133)
|++++++|+.+..|++.+.++. ++.|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 9999999999999999998874 4566665554
No 77
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.90 E-value=4.8e-23 Score=136.64 Aligned_cols=112 Identities=40% Similarity=0.738 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988878788888887778888888899999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCC-----Ccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQGI-----HIQSLLQRF 122 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~-----~~~~~l~~~ 122 (133)
|++++++++++..|.+.+..... +.|+++.+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 117 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGN 117 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEE
Confidence 99999999999999998866543 566665543
No 78
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.90 E-value=8e-23 Score=136.22 Aligned_cols=113 Identities=30% Similarity=0.537 Sum_probs=98.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
+.||+++|+++||||||++++..+.+.+.+.++.+..+ ...+.+++..+.+.+||++|++++...+...++++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 46999999999999999999999999888888876554 34566777788999999999999988888899999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhCCCccccccccc
Q 032789 90 YDITNQASFERAK-KWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~ 123 (133)
||++++++|+.+. .|+..+.+..++.|+++.++.
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 114 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 114 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeC
Confidence 9999999999986 699999887788888877553
No 79
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.90 E-value=7.9e-23 Score=134.97 Aligned_cols=106 Identities=25% Similarity=0.435 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|++|||||||++++..+.+.+.+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999999888766544 3333 46677888888999999999975 24567899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
|+++++||+++..|++.+.++. ++.|+++.++.
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK 108 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQ 108 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeH
Confidence 9999999999999999998775 67888888875
No 80
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.90 E-value=8.8e-23 Score=134.44 Aligned_cols=112 Identities=26% Similarity=0.482 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
.+||+++|+++||||||++++.++.+..++.++.+..+ .....+++..+.+.+||++|++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999999999999988877777776443 45566777788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh--CCCcccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQ--GIHIQSLLQRF 122 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~ 122 (133)
||++++++|+++..|+..+.+. ..+.|+++.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 9999999999999999999775 34566665554
No 81
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.90 E-value=7.3e-23 Score=135.02 Aligned_cols=112 Identities=31% Similarity=0.541 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|++|||||||++++.++.+...+.++.+. ........++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 48999999999999999999999888777776653 34556667777899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
|++++++|+++..|...+.+.. .+.|+++.++.
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK 114 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNK 114 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 9999999999999999887653 35677665543
No 82
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.90 E-value=2.3e-22 Score=133.90 Aligned_cols=112 Identities=29% Similarity=0.493 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++..+.+...+.++.+.. ....+.+++..+.+.+||++|++.+...+...++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 589999999999999999999999887777776543 3445677777888999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCccccccccc
Q 032789 91 DITNQASFERAK-KWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~ 123 (133)
|++++++|+++. .|++.+....++.|+++.++.
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK 113 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQ 113 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEc
Confidence 999999999986 799999877788888887654
No 83
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.90 E-value=1.7e-22 Score=132.45 Aligned_cols=112 Identities=48% Similarity=0.831 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++..+.+.+.+.++.+.+.....+...+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887766667766666777777777789999999999998888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCC-Ccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQGI-HIQSLLQRF 122 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~ 122 (133)
|++++++++.+..|++.+.+..+ +.|+++..+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~n 113 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGN 113 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999999999999987654 456665543
No 84
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=1.8e-22 Score=137.43 Aligned_cols=114 Identities=21% Similarity=0.342 Sum_probs=90.1
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHhC-----CCCCcccCceee-eEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 032789 10 NAKLVLLGDVGAGKSSLVL-RFVKG-----QFIEFQESTIGA-AFFSQT--------LAVNDATVKFEIWDTAGQERYHS 74 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~-~l~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~d~~g~~~~~~ 74 (133)
.+||+++|+++||||||+. ++.++ .+.+++.++++. +..... ..+++..+.+++||++|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 5799999999999999995 56544 345567788752 322222 246778899999999998753
Q ss_pred cccccccccCEEEEEEECCChhhHHHHH-HHHHHHHHhCCCccccccccccc
Q 032789 75 LAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 75 ~~~~~~~~~~~iv~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
....+++++|++++|||+++++||++++ .|++.+.+..++.|+++.++...
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~D 131 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLD 131 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 3456889999999999999999999997 69999988888889888876554
No 85
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.90 E-value=1.8e-22 Score=131.36 Aligned_cols=112 Identities=54% Similarity=0.887 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++.+.++...+.++.+.++....+..+.....+.+||++|++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999999888888888888888888877899999999999998888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
|++++++++.+..|+..+.+.. +..|+++..+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 113 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGN 113 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 9999999999999999998877 5566655544
No 86
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=4.5e-22 Score=131.84 Aligned_cols=115 Identities=39% Similarity=0.705 Sum_probs=99.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|++|||||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988888777788887777777888888889999999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCC-Ccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQGI-HIQSLLQRF 122 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~ 122 (133)
+|||++++++|+.+..|+..+..... +.|.++.++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~N 120 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGN 120 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999999999999998876543 466555544
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.89 E-value=2.9e-22 Score=133.03 Aligned_cols=112 Identities=27% Similarity=0.487 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|++|||||||++++.++.+...+.++.+.. ..+.+..++..+.+++||++|++++...+...++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999999888787877654 3566677777889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
|++++++++.+..|...+.+. ..+.|+++.++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 115 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNK 115 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEC
Confidence 999999999999999999764 346777665543
No 88
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=1.2e-23 Score=136.32 Aligned_cols=115 Identities=37% Similarity=0.719 Sum_probs=102.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
+.++++++|++-||||||++++..+++.+-..|++|.++..+.+... +..+++++|||.|+++|+...+.++++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 57899999999999999999999999999999999999988877764 77899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC--CCccc-cccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQG--IHIQS-LLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~-~l~~~~ 123 (133)
+|||++|++||+.++.|+.+..-+. |+-++ .|+++.
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhK 125 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHK 125 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccc
Confidence 9999999999999999999886653 54444 444444
No 89
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.89 E-value=6.9e-23 Score=135.88 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=94.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEEC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI 92 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~ 92 (133)
|+++|+++||||||++++.++.+...+.++.+... . .++....++.+||++|++++...+..+++.+|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~--~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--V--AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--E--EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 78999999999999999999988887888887543 2 2334458999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 93 TNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 93 ~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+++.+|+.++.|+..+.+..++.|+++.++...
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~D 110 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQD 110 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcC
Confidence 999999999999999987667888888776543
No 90
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=1.7e-22 Score=126.97 Aligned_cols=112 Identities=30% Similarity=0.553 Sum_probs=88.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFI--EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
||+++|++|||||||++++.+..+. ..+....+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 12223333444445556666666799999999998888888889999999999
Q ss_pred EECCChhhHHHHH---HHHHHHHHhCCCccccccccc
Q 032789 90 YDITNQASFERAK---KWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 90 ~d~~~~~s~~~~~---~~~~~i~~~~~~~~~~l~~~~ 123 (133)
||+++++||+++. .|+..+..+..+.|+++.++.
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK 117 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNK 117 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEec
Confidence 9999999999975 567777777888999888764
No 91
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.89 E-value=1.5e-22 Score=133.91 Aligned_cols=111 Identities=30% Similarity=0.456 Sum_probs=92.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccccCEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~~~~~~~~~~~~iv~v~ 90 (133)
||+++|+++||||||+++++.+.+..++.++.+..+ .....+++..+.+++||++|+++ ........++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999888777777665433 45566778788999999999985 3445667889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC---CCccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG---IHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~---~~~~~~l~~~~ 123 (133)
|+++++||+.++.|+..+.+.. ++.|+++.++.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 9999999999999999988754 47788777653
No 92
>PLN03118 Rab family protein; Provisional
Probab=99.89 E-value=5.5e-22 Score=136.37 Aligned_cols=117 Identities=35% Similarity=0.641 Sum_probs=97.7
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 032789 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (133)
Q Consensus 4 ~~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 83 (133)
+.+....+||+++|+++||||||++++..+.+. .+.++.+.++....+..++..+.+.+||++|++++...+..+++.+
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 445567899999999999999999999998774 4677888877777777887788999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHH-HHHHHHHhC--CCccccccc
Q 032789 84 AAAIIVYDITNQASFERAKK-WVQELQAQG--IHIQSLLQR 121 (133)
Q Consensus 84 ~~iv~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~~~~l~~ 121 (133)
|++|+|||++++++|+++.. |...+.... .+.|+++.+
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~ 127 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVG 127 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 99999999999999999975 777665543 345555544
No 93
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.89 E-value=3.3e-22 Score=138.36 Aligned_cols=109 Identities=37% Similarity=0.608 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++..+++.. +.++.+.++..... ..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999875 56777766544332 3578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-CCCcccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQ-GIHIQSLLQRFFS 124 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~-~~~~~~~l~~~~~ 124 (133)
|+++++||+++..|+..+.+. .++.|++++++..
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~ 110 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL 110 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 999999999999888877664 4567877776653
No 94
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.89 E-value=1.5e-21 Score=129.28 Aligned_cols=113 Identities=30% Similarity=0.561 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|++|||||||++++.++++...+.++... .........+..+.+++||++|++++.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 58999999999999999999999987767666654 34455566777889999999999998888888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCcccccccccc
Q 032789 91 DITNQASFERAK-KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|++++++|++.. .|+..+....++.|+++.++..
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 114 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKI 114 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccH
Confidence 999999999865 6999998888888888766543
No 95
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.88 E-value=6.4e-22 Score=132.47 Aligned_cols=112 Identities=21% Similarity=0.376 Sum_probs=91.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
.+.+||+++|+++||||||++++..+++.. +.++.+.++. ..... .+.+++||++|++++...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 356999999999999999999998877753 6677776553 23333 489999999999999989999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh--CCCcccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFFS 124 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~ 124 (133)
+|||++++++++++.+|+..+... .++.|+++.++..
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~ 124 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQ 124 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCc
Confidence 999999999999999998888543 3566766665543
No 96
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.88 E-value=1.2e-21 Score=135.84 Aligned_cols=111 Identities=24% Similarity=0.360 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-ccCEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR-GAAAAII 88 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~-~~~~iv~ 88 (133)
+||+++|++|||||||++++..+.+. ..+.++.+.++....+.+++....+.+||++|++.+ ....+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 666666655667777888888899999999999832 2344566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
|||+++++||+.+..|+..+.+.. .+.|++++++.
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK 115 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNK 115 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 999999999999999999998764 56777776653
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.88 E-value=3.8e-22 Score=132.81 Aligned_cols=112 Identities=24% Similarity=0.410 Sum_probs=91.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|+++||||||++++..+.+.. +.++.+.++. .+.. ..+.+++||++|++++...+..+++++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 356899999999999999999998877754 5677776543 2223 3589999999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh--CCCcccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFFS 124 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~ 124 (133)
+|||++++.+|+++..|+.++... .++.|+++..+..
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~ 120 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQ 120 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECc
Confidence 999999999999999888777543 3567777766544
No 98
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=1.4e-21 Score=129.63 Aligned_cols=111 Identities=25% Similarity=0.416 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|+++||||||++++..+++...+..+. .++ .....+.+..+++.+||++|++.+...+...++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998876543322 222 333445567789999999999888777777789999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCccccccccc
Q 032789 91 DITNQASFERAK-KWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~ 123 (133)
|++++++|+++. .|++.+++..++.|+++.++.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK 112 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNK 112 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 999999999985 799999887778888876654
No 99
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.88 E-value=3.1e-21 Score=130.36 Aligned_cols=115 Identities=30% Similarity=0.536 Sum_probs=97.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
+.||+++|++|||||||++++..+.+.+++.++....+ ...+..++....+.+||++|++.+.......++.+|+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 46999999999999999999998888777766665444 33556677778899999999998877777788999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhCCCccccccccccc
Q 032789 90 YDITNQASFERAK-KWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
||++++++|+++. .|++.+.++.++.|+++.++...
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~D 116 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKD 116 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence 9999999999997 69999998888999998877543
No 100
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=7.5e-22 Score=132.94 Aligned_cols=112 Identities=19% Similarity=0.354 Sum_probs=91.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
.+.+||+++|+++||||||++++..+.+.. +.++.+.++. .+... .+.+++||++|++++...+..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 356899999999999999999999887764 5677776543 33333 489999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh--CCCcccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFFS 124 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~ 124 (133)
+|||++++++++++..|+..+.+. .++.|+++..+..
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~ 128 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECC
Confidence 999999999999999888887543 3567777766543
No 101
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.4e-22 Score=126.67 Aligned_cols=119 Identities=34% Similarity=0.632 Sum_probs=111.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+.+..+|.+++|+-|||||+|++++..++|-...+.++|.++..+.+.+++.++++++||+.|+++|+...+.+++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 56788999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-CCCcccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQ-GIHIQSLLQRFFS 124 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~l~~~~~ 124 (133)
.++|||++.++++..+..|+...+.- .|+..+++.++..
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignka 126 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKA 126 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchh
Confidence 99999999999999999999999775 5888888887653
No 102
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.87 E-value=1.4e-21 Score=128.98 Aligned_cols=108 Identities=20% Similarity=0.382 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|.++||||||++++..+.+.. +.++.+..+. .+... .+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 489999999999999999998887764 6677776542 33333 488999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
|++++.+|+++.+|+..+... ..+.|+++.++.
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 110 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANK 110 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEEC
Confidence 999999999999888877543 234566655443
No 103
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.87 E-value=5e-22 Score=128.36 Aligned_cols=118 Identities=44% Similarity=0.758 Sum_probs=105.1
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
..+...+|++++|..=||||||+-|+..++|...+..+...++..+.+.+.+....+.+||+.|+++|.++-+.++++.+
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 34668899999999999999999999999999989999988999999999888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
+.++|||++|++||+.++.|..+++.-. ..+-.+++++
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGN 126 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGN 126 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecC
Confidence 9999999999999999999999998743 3334444443
No 104
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=2.9e-21 Score=131.64 Aligned_cols=111 Identities=21% Similarity=0.395 Sum_probs=94.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
||+++|++|||||||++++..+++...+.++.. +.....+.+.+..+.+++||++|+..+...+..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999998877766664 3455567777777899999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 92 ITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
++++++|+++..|+..+.+.. .+.|+++..+.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 113 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNK 113 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEc
Confidence 999999999999999988764 35666665543
No 105
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.87 E-value=3e-21 Score=126.35 Aligned_cols=111 Identities=35% Similarity=0.570 Sum_probs=94.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
||+++|+++||||||++++....+...+.++.+ +.........+..+.+++||++|++.+...+...++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999888777777766 4455666667677899999999999988888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCC--Cccccccccc
Q 032789 92 ITNQASFERAKKWVQELQAQGI--HIQSLLQRFF 123 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~~--~~~~~l~~~~ 123 (133)
++++++++++..|...+.+... ..|+++.++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 113 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNK 113 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 9999999999999999987654 6666665544
No 106
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=2.7e-21 Score=130.29 Aligned_cols=110 Identities=21% Similarity=0.380 Sum_probs=88.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
+.+||+++|+++||||||++++..+.+.. +.++.+.++. .+.. ..+.+++||++|++++...+..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999998887765 5677775543 3333 34899999999999999899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
|||++++++++++.+|+..+... ..+.|+++.++.
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK 127 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANK 127 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeC
Confidence 99999999999999888877542 245566665443
No 107
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.86 E-value=3.4e-21 Score=129.81 Aligned_cols=114 Identities=23% Similarity=0.343 Sum_probs=92.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEE-CCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
..+||+++|++|||||||++++..+.+... .++.+.+.....+.. +...+.+.+||++|++++...+..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 358999999999999999999998887654 566666555555544 335689999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
+|+|++++++++.+..|+.++.... .+.|+++..+.
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK 118 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANK 118 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEEC
Confidence 9999999999999999998887643 34565555443
No 108
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.86 E-value=9.7e-21 Score=124.47 Aligned_cols=111 Identities=28% Similarity=0.490 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|++|||||||++++....+...+.++.+.. .......++..+.+.+||++|++.+...+..+++.+++++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999998887777776543 3455667778899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh--CCCcccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQ--GIHIQSLLQRF 122 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~ 122 (133)
|++++.+|+.+..|+..+.+. ..+.|+++..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N 113 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGN 113 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 999999999999999999876 34666655544
No 109
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.86 E-value=5.9e-21 Score=127.00 Aligned_cols=107 Identities=25% Similarity=0.418 Sum_probs=87.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
||+++|+++||||||++++....+.. +.++.+..+. .+..+ .+.+.+||++|+.++...+..+++.+|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999887654 6677765543 23333 4899999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 92 ITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
++++++++++..|+..+.+. ..+.|+++.++.
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 109 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANK 109 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeC
Confidence 99999999999999999754 234666665544
No 110
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.86 E-value=5.1e-21 Score=127.18 Aligned_cols=108 Identities=20% Similarity=0.270 Sum_probs=88.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
+|+++|+++||||||++++.++ +...+.++.+.. ...+... ...+++||++|++++...+..+++.+|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999876 666677787754 3344444 4889999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC--CCcccccccccc
Q 032789 92 ITNQASFERAKKWVQELQAQG--IHIQSLLQRFFS 124 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~~ 124 (133)
++++.+++++..|+..+.++. .+.|+++..+..
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~ 110 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQ 110 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCC
Confidence 999999999999999997653 456666655443
No 111
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.86 E-value=5.2e-23 Score=135.31 Aligned_cols=118 Identities=32% Similarity=0.597 Sum_probs=110.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+|++++|+.+|||+|++++++.+-|...|..++|.++..+.+.+....+.+.+||++|+++|....+.+++++.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 34567899999999999999999999999999999999999988888888888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
.++||+.+|+.||+...+|.+.+...+.++|.+++.+.
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNK 133 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNK 133 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeecc
Confidence 99999999999999999999999999999999887654
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.86 E-value=8.2e-21 Score=126.63 Aligned_cols=113 Identities=22% Similarity=0.344 Sum_probs=89.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
++...+||+++|+++||||||++++.+..+ ..+.++.+.. ...+.++ .+.+.+||++|++.+...+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 455678999999999999999999997754 3455666643 3344444 3789999999999888888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
+++|||++++.+|+++..|+..+... ..+.|+++.++.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK 124 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANK 124 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEEC
Confidence 99999999999999999998888543 255666665443
No 113
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.85 E-value=1.6e-22 Score=127.35 Aligned_cols=109 Identities=39% Similarity=0.739 Sum_probs=97.1
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEEC
Q 032789 14 VLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI 92 (133)
Q Consensus 14 ~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~ 92 (133)
+++|++.+|||+|+-|+..+.|. ....+++|+++..+.+..++.++++++||+.||++|++....+++++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999999888877 46678999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCC-cccccccc
Q 032789 93 TNQASFERAKKWVQELQAQGIH-IQSLLQRF 122 (133)
Q Consensus 93 ~~~~s~~~~~~~~~~i~~~~~~-~~~~l~~~ 122 (133)
+++.||++++.|+.+|.++... +...+.++
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgn 111 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGN 111 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhcc
Confidence 9999999999999999887643 34444443
No 114
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.85 E-value=2.9e-20 Score=124.49 Aligned_cols=112 Identities=33% Similarity=0.461 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
.||+++|++|||||||++++..+.+...+.++.+..+ ...+...+..+.+.+||++|++++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999988776767665433 455666777788999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
|+++.++++.+..|...+.+.. .+.|+++.++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK 115 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNK 115 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEc
Confidence 9999999999999988887753 45566665543
No 115
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.84 E-value=1.2e-20 Score=128.45 Aligned_cols=116 Identities=32% Similarity=0.518 Sum_probs=104.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+|++++|.+|||||+|..++..+.|..+|.++++ +.+.+.+.+++..+.+.++|++|++++..+...+++.+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999997 5677888888999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh--CCCccccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFFSC 125 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~~ 125 (133)
||+++++.||+.++.+.++|.+. ....|++++++...
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~D 119 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCD 119 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEccc
Confidence 99999999999999999999543 24568888887543
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.84 E-value=1.8e-20 Score=123.15 Aligned_cols=108 Identities=18% Similarity=0.291 Sum_probs=86.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+|+++|+++||||||++++.+..+ ...+.++.+.... .... ..+++.+||++|++++...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4556677765432 2222 3588999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC----CCccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQG----IHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~----~~~~~~l~~~~ 123 (133)
|++++.+++.+..|+..+.+.. .+.|+++..+.
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK 113 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANK 113 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeC
Confidence 9999999999999998886532 35666665544
No 117
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.4e-22 Score=129.89 Aligned_cols=108 Identities=32% Similarity=0.693 Sum_probs=98.1
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC---------CeEEEEEEEeCCCccccccc
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN---------DATVKFEIWDTAGQERYHSL 75 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~d~~g~~~~~~~ 75 (133)
+...+.+|.+.+|++||||||++.++..++|......++|+++..+.+-++ +..+.+++||+.|+++|+..
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 345667899999999999999999999999999999999999988887763 24578899999999999999
Q ss_pred ccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC
Q 032789 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112 (133)
Q Consensus 76 ~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~ 112 (133)
...+++++=+++++||++++.||-+++.|+.+++.|.
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA 120 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA 120 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998873
No 118
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.84 E-value=4.4e-20 Score=127.14 Aligned_cols=115 Identities=40% Similarity=0.605 Sum_probs=100.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|++|||||||++++.++.+...+.++.+..+...........+++.+||++|+++++..+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999999998998887777777666557899999999999999999999999999999
Q ss_pred EEECCCh-hhHHHHHHHHHHHHHhCC-Cccccccccc
Q 032789 89 VYDITNQ-ASFERAKKWVQELQAQGI-HIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~~l~~~~ 123 (133)
|||.++. .+++..+.|.+.+.+..+ ..|+++.+.-
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK 120 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecc
Confidence 9999994 555557799999999885 6787777654
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.84 E-value=3.8e-20 Score=121.54 Aligned_cols=109 Identities=20% Similarity=0.406 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
||+++|++|||||||++++..+.+.. +.++.+.++ ..+.. ...+.+.+||++|++.+...+..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999988764 346666443 22333 245799999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC--CCcccccccccc
Q 032789 92 ITNQASFERAKKWVQELQAQG--IHIQSLLQRFFS 124 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~~ 124 (133)
.+++.+++++..|+..+.+.. .+.|+++..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 111 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQ 111 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECc
Confidence 999999999999988886532 455655554443
No 120
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.84 E-value=4.2e-20 Score=123.49 Aligned_cols=109 Identities=25% Similarity=0.427 Sum_probs=88.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
...||+++|+++||||||++++..+.+.. +.++.+.++. ....+ ...+.+||++|++.+...+...++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999888775 4566665543 33333 4889999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC--CCcccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG--IHIQSLLQRF 122 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~ 122 (133)
|+|+++++++.....|+..+.++. .+.|+++..+
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 999999999999988888775542 3456555443
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.82 E-value=1.7e-19 Score=120.91 Aligned_cols=112 Identities=29% Similarity=0.461 Sum_probs=91.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
...+..||+++|.++|||||+++++..+.... ..|+.|.. ...+..++ +.+.+||.+|+..++..|+.+++.+|+
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence 34789999999999999999999998775544 55666644 44555555 889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC--CCcccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRF 122 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~ 122 (133)
+|+|+|.++++.+++..+.+..+.++. .+.|+++..+
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~N 123 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILAN 123 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEec
Confidence 999999999999999998888887643 3556555433
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.82 E-value=1.6e-19 Score=118.42 Aligned_cols=106 Identities=26% Similarity=0.490 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
||+++|.+|||||||++++.++... .+.++.+... ..+.+. .+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988743 3556665443 333444 4789999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC--CCcccccccc
Q 032789 92 ITNQASFERAKKWVQELQAQG--IHIQSLLQRF 122 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~ 122 (133)
+++++++.++..|+..+.+.. ++.|+++..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 999999999999998886643 4666666544
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=2.9e-19 Score=120.50 Aligned_cols=112 Identities=21% Similarity=0.338 Sum_probs=87.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
.++.+||+++|.+|||||||++++.++.+.. +.++.+.. ...+..++ +++.+||++|+..+...+..+++.+|++
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3567999999999999999999999876643 33444432 22333343 7899999999998888889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
++|+|+++++++.+...|+..+.+. ..+.|+++..+.
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK 127 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNK 127 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 9999999999999999888887653 245666665543
No 124
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.3e-19 Score=119.62 Aligned_cols=110 Identities=23% Similarity=0.437 Sum_probs=95.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
..+..+|+++|.+++||||++.++..++.... .||+|. ..+.+.+.+ +++++||.+|+++++..|+.++++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGf--nVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGF--NVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccc--ceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence 56789999999999999999999998888775 788885 455566665 9999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCC--Cccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGI--HIQSLLQR 121 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~l~~ 121 (133)
|+|+|.+|++.+.+.++-+..+.++.. ++|+++..
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~a 125 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFA 125 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEe
Confidence 999999999999999998888887765 44544433
No 125
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.81 E-value=4.2e-19 Score=116.68 Aligned_cols=108 Identities=25% Similarity=0.375 Sum_probs=83.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
||+++|+++||||||++++..+.+.. +.++.+.+.. .+.. ....+++||++|++.+...+..+++.+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998877754 4566655433 2333 34789999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh--CCCcccccccccc
Q 032789 92 ITNQASFERAKKWVQELQAQ--GIHIQSLLQRFFS 124 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~ 124 (133)
++++.++....+|+..+.+. ..+.|+++..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~ 110 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQ 110 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCC
Confidence 99999998877766655332 2456666655543
No 126
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.80 E-value=4.1e-19 Score=117.37 Aligned_cols=107 Identities=25% Similarity=0.348 Sum_probs=82.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC------CCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQF------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+|+++|++|||||||++++..... ...+.++.+.++. .+.++ ...+.+||++|++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976422 2233445554443 33344 4799999999999998888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC--CCcccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRF 122 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~ 122 (133)
+++|+|.+++++++....|+..+.+.. .+.|+++..+
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 115 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILAN 115 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 999999999999999999988886642 4566665444
No 127
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.80 E-value=7.8e-19 Score=113.89 Aligned_cols=112 Identities=21% Similarity=0.341 Sum_probs=88.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
+.++++|.++|.+|+||||+.+++.+... +...++.|..+ ++..+++ +++++||.+||...+.+|+.++...||+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~I--ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQI--KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceee--EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 34589999999999999999999988763 33556777544 4444444 8999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHH--HhCCCccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQ--AQGIHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~--~~~~~~~~~l~~~~ 123 (133)
|+|+|.+|+..+++...-++.+. ++....|.++.-+.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank 126 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANK 126 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEec
Confidence 99999999999999886666653 33445565554433
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.80 E-value=5.3e-19 Score=115.07 Aligned_cols=105 Identities=30% Similarity=0.455 Sum_probs=86.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEEC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI 92 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~ 92 (133)
|+++|++|||||||++++.+.++..++.++.+.+... +.... ..+.+||++|++.+...+..+++.+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7899999999999999999999988888888765542 33333 7899999999999988888999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHh--CCCccccccc
Q 032789 93 TNQASFERAKKWVQELQAQ--GIHIQSLLQR 121 (133)
Q Consensus 93 ~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~ 121 (133)
+++.++.....|+..+.+. .++.|+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 108 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLG 108 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEE
Confidence 9999999998888887653 2455655443
No 129
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.80 E-value=9.5e-19 Score=118.14 Aligned_cols=111 Identities=22% Similarity=0.372 Sum_probs=87.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
..+..||+++|++|||||||++++.++.+. .+.++.+.. ...+.+++ .++.+||++|+..+...+..+++.+|++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 456799999999999999999999987764 355555443 23444444 7899999999998888888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC--CCcccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRF 122 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~ 122 (133)
++|+|+++++++++...|+..+.+.. .+.|+++..+
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~N 128 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGN 128 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEe
Confidence 99999999999999998888886532 4566666443
No 130
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=111.99 Aligned_cols=114 Identities=25% Similarity=0.575 Sum_probs=103.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.+.-.+||-++|+++.|||||+-.+.++.+.+++..+.|..+..+++.+.+..+.+.+||.+|++++..+.+...+++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34568899999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCc-cccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQGIHI-QSLL 119 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~l 119 (133)
++++||++.++++..+.+|+.+.+.....+ |+++
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilv 130 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILV 130 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccceEEe
Confidence 999999999999999999999998765443 4443
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.76 E-value=1.7e-17 Score=107.37 Aligned_cols=112 Identities=28% Similarity=0.480 Sum_probs=92.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
++||+++|.+|+|||||++++....+..++.++.+.+.....+..++..+.+.+||++|+..+...+....+.+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999987777777777777766677777668899999999998888888889999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHHhCC-Cccccccc
Q 032789 90 YDITNQ-ASFERAK-KWVQELQAQGI-HIQSLLQR 121 (133)
Q Consensus 90 ~d~~~~-~s~~~~~-~~~~~i~~~~~-~~~~~l~~ 121 (133)
+|.... .++.... .|...+.+... +.|+++..
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 115 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVG 115 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEE
Confidence 999987 7777765 78887776655 55555543
No 132
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.74 E-value=2.6e-17 Score=112.72 Aligned_cols=111 Identities=15% Similarity=0.248 Sum_probs=81.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc-CEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA-AAAIIVY 90 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~-~~iv~v~ 90 (133)
+|+++|+++||||||++++..+++...+.+. .................+.+||+||+.++...+...++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998877655443 2222222221123457899999999999988777888898 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHHh----CCCccccccccc
Q 032789 91 DITNQ-ASFERAKKWVQELQAQ----GIHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~-~s~~~~~~~~~~i~~~----~~~~~~~l~~~~ 123 (133)
|.++. +++.++.+|+..+... .+..|+++..+.
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK 118 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNK 118 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecc
Confidence 99997 7888887777665332 356666665443
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.74 E-value=2.6e-17 Score=109.40 Aligned_cols=111 Identities=20% Similarity=0.346 Sum_probs=85.9
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
.+....+||+++|++|||||||++++.+..+.. +.++.+.+. ..+...+ ..+.+||++|+..+...+..+++.+|
T Consensus 9 ~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~ 83 (173)
T cd04155 9 RKSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTD 83 (173)
T ss_pred hccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCC
Confidence 345568999999999999999999999876543 445555433 3334444 78999999999888878888899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhC--CCcccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQ 120 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~ 120 (133)
++++|+|+++..++.....|+..+.... .+.|+++.
T Consensus 84 ~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 121 (173)
T cd04155 84 CLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVF 121 (173)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 9999999999999999888877775432 34565554
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.72 E-value=3.3e-17 Score=109.42 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=72.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-------CCCcccC------ceeeeEEEEEEE--E---CCeEEEEEEEeCCCccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQES------TIGAAFFSQTLA--V---NDATVKFEIWDTAGQERYH 73 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~l~d~~g~~~~~ 73 (133)
+|+++|..+||||||+++++... +...+.+ +.|.++...... + ++..+.+.+||++|++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1111212 223333333222 2 4567889999999999998
Q ss_pred ccccccccccCEEEEEEECCChhhHHHHHHHHHHH
Q 032789 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108 (133)
Q Consensus 74 ~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i 108 (133)
.....+++.+|++++|+|+++..+++.+..|....
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~ 116 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL 116 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH
Confidence 88888999999999999999987787777775443
No 135
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.72 E-value=1e-16 Score=105.91 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccc---------cccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP---------MYYR 81 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~---------~~~~ 81 (133)
.+|+++|.+|||||||++++.+..+.....+....+........ ...++.+||+||+.......+ ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37999999999999999999988764322111111122222222 347999999999743211000 0112
Q ss_pred ccCEEEEEEECCChhh--HHHHHHHHHHHHHhCCCcccccccc
Q 032789 82 GAAAAIIVYDITNQAS--FERAKKWVQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 82 ~~~~iv~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~l~~~ 122 (133)
..|++++|+|++++.+ ++....|++.+.+...+.|+++..+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~N 121 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLN 121 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEE
Confidence 3589999999998765 4667789999877655666665544
No 136
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.72 E-value=2.5e-17 Score=111.87 Aligned_cols=113 Identities=18% Similarity=0.298 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCCCCcc------------cCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK--GQFIEFQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 76 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~ 76 (133)
-+|+++|.++||||||+++++. +.+...+ ..+.+.++......+......+.+||++|+++|....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999997 4444332 1234444444444444456899999999999998888
Q ss_pred cccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 77 ~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
..+++.+|++++|+|+++.. +.+...|+..+........+++.++|.
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl 129 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALELGLKPIVVINKIDR 129 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHHcCCCEEEEEECCCC
Confidence 88999999999999998742 334445555555443334444555554
No 137
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6.5e-17 Score=102.73 Aligned_cols=116 Identities=23% Similarity=0.440 Sum_probs=91.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
.++++|+++|..++||||++.++..+.... ..++.|+ ..+++++.+ +++.+||.+|+++.+..|+.+++...++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGF--nvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGF--NVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcc-cccccce--eEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 458999999999999999999998876654 4577775 456666666 89999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCccccccccccceee
Q 032789 88 IVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSCINI 128 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~ 128 (133)
+|.|..+++..++.++-+-.+..+..-.-.++.++.+-+++
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDl 130 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDL 130 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccc
Confidence 99999999889998876666655443333344444444444
No 138
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.70 E-value=1.3e-16 Score=105.54 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=71.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccccC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMY---YRGAA 84 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----~~~~~~~~---~~~~~ 84 (133)
+|+++|.+|||||||++++.+........+....+.....+...+ ...+.+||+||..+ .......+ ++.+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999987543211111111111112222332 24899999999642 11222333 34599
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhCC---Cccccccc
Q 032789 85 AAIIVYDITNQ-ASFERAKKWVQELQAQGI---HIQSLLQR 121 (133)
Q Consensus 85 ~iv~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~~~l~~ 121 (133)
++++|+|++++ ++++++..|++.+.+..+ ..|+++..
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 121 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVL 121 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEE
Confidence 99999999999 899999999999977643 34444443
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.69 E-value=4.2e-16 Score=99.78 Aligned_cols=107 Identities=46% Similarity=0.821 Sum_probs=83.6
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEECC
Q 032789 15 LLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT 93 (133)
Q Consensus 15 i~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~ 93 (133)
++|++|+|||||++++.+... .....++. .+..............+.+||++|+..+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44444444 5666666666667789999999999888777788899999999999999
Q ss_pred ChhhHHHHHHH--HHHHHHhCCCcccccccc
Q 032789 94 NQASFERAKKW--VQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 94 ~~~s~~~~~~~--~~~i~~~~~~~~~~l~~~ 122 (133)
++.+++.+..| ...........|+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence 99999999987 333334445666655543
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.69 E-value=3.1e-16 Score=102.96 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=60.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC---CCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG---QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
.|+++|+++||||||++++.+. .+..++.++.+.+.....+.+.. ...+.+||+||++++.......+..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999863 33333333333334344444442 3689999999999887666667889999999
Q ss_pred EEECCC
Q 032789 89 VYDITN 94 (133)
Q Consensus 89 v~d~~~ 94 (133)
|+|+++
T Consensus 81 V~d~~~ 86 (164)
T cd04171 81 VVAADE 86 (164)
T ss_pred EEECCC
Confidence 999987
No 141
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.68 E-value=5.4e-16 Score=98.75 Aligned_cols=109 Identities=22% Similarity=0.359 Sum_probs=87.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
..+.+||.++|-.++||||+++++.+..... ..++-|+ ..+.+.+++ ...+.+||.+|+...+..|..++.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~GF--n~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTNGF--NTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhh-ccccCCc--ceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceE
Confidence 4678999999999999999999998776543 3466664 455555553 57899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC--CCccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG--IHIQSLL 119 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l 119 (133)
++|.|.+|+..|+++.+-+-++.+.. ..+|+++
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlI 124 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLI 124 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceee
Confidence 99999999999999987666665433 4444443
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.68 E-value=3.6e-16 Score=103.15 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=64.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
.|+++|.++||||||++++...++..........+.....+... .....+.+||++|+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887766443333333322333332 13578999999999988887788889999999999
Q ss_pred ECCCh
Q 032789 91 DITNQ 95 (133)
Q Consensus 91 d~~~~ 95 (133)
|.++.
T Consensus 82 d~~~~ 86 (168)
T cd01887 82 AADDG 86 (168)
T ss_pred ECCCC
Confidence 99884
No 143
>PTZ00099 rab6; Provisional
Probab=99.68 E-value=5.7e-16 Score=103.97 Aligned_cols=91 Identities=44% Similarity=0.728 Sum_probs=80.8
Q ss_pred CCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC
Q 032789 33 GQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~ 112 (133)
+.|.+.+.+++|.++..+.+.+++..+.+.+||++|++++...+..+++.+|++|+|||+++++||+.+..|+..+.+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45777888999999988888888889999999999999999999999999999999999999999999999999997654
Q ss_pred -CCccccccccc
Q 032789 113 -IHIQSLLQRFF 123 (133)
Q Consensus 113 -~~~~~~l~~~~ 123 (133)
++.|+++.++.
T Consensus 83 ~~~~piilVgNK 94 (176)
T PTZ00099 83 GKDVIIALVGNK 94 (176)
T ss_pred CCCCeEEEEEEC
Confidence 56777776654
No 144
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.67 E-value=1.1e-15 Score=115.38 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=78.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMY 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~--------~~~~ 79 (133)
..+||+++|++|||||||++++.+.... ....++.+.+.....+.+++ .++.+|||+|..++... ....
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999986532 22234444555566666665 67899999998655432 2356
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
++.+|++++|+|++++.+++.. |+..+........++++++|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~~~piIlV~NK~D 321 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNKSKKPFILVLNKID 321 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhhCCCCEEEEEECcc
Confidence 7889999999999999888776 87777543332333344444
No 145
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=1e-15 Score=104.50 Aligned_cols=112 Identities=20% Similarity=0.120 Sum_probs=73.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--cc------ccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--LA------PMY 79 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~--~~------~~~ 79 (133)
+..++|+++|++|||||||++++.+..+........+.+.....+...+ ...+.+||++|..+... .. ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999998764332222222223333333433 23799999999732111 00 112
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccc
Q 032789 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQ 120 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~ 120 (133)
+..+|++++|+|++++.+++.+..|.+.+.... .+.|+++.
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV 159 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILV 159 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEE
Confidence 567999999999999999988888887776643 23344443
No 146
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.6e-15 Score=99.78 Aligned_cols=123 Identities=30% Similarity=0.553 Sum_probs=108.4
Q ss_pred CCCCCCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 032789 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80 (133)
Q Consensus 1 m~~~~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~ 80 (133)
|+++.-..-..|++++|+.+.|||++.++.+.+.|...+.++.|.+........+...+++..||+.|++.+....+.++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 44444445689999999999999999999999999999999999988777666655569999999999999999888888
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 81 ~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
=.....++.||++.+-++.++..|-..+.+.+.++|+++=++.
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNK 123 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNK 123 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccc
Confidence 8888999999999999999999999999999999998876553
No 147
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.64 E-value=1.4e-15 Score=111.75 Aligned_cols=111 Identities=20% Similarity=0.152 Sum_probs=76.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAPMY 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~---------~~~~~~~~~ 79 (133)
..++|+++|.+|||||||++++.+........+....+.....+.+.+ ..++.+|||+|.. .|.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 348999999999999999999998765432222233344555555532 2589999999972 122221 24
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccc
Q 032789 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQR 121 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~ 121 (133)
+.++|++++|+|++++.+++++..|...+.+.. .+.|++++.
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~ 308 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVY 308 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 778999999999999988888877766665532 244444433
No 148
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.62 E-value=9.5e-16 Score=116.08 Aligned_cols=115 Identities=21% Similarity=0.336 Sum_probs=93.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
.+.++|+++|+.|||||||+..+....|.+.-++....-..+- ......++..+.|++..++-+......++.+|++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPa--dvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPA--DVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCC--ccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 4689999999999999999999999999876554433212222 22233467899999877666666678899999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhC---CCcccccccccc
Q 032789 88 IVYDITNQASFERAK-KWVQELQAQG---IHIQSLLQRFFS 124 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~i~~~~---~~~~~~l~~~~~ 124 (133)
++|+++++++.+.+. .|++.+++.. .+.|+|+.+|.+
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~ 125 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKS 125 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeecc
Confidence 999999999999998 8999999988 999999999864
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=3.7e-15 Score=113.48 Aligned_cols=109 Identities=22% Similarity=0.180 Sum_probs=73.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPM 78 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--------~~~~~~~ 78 (133)
....+|+++|.+|||||||++++.+.... ....++.+.+.........+ ..+.+||++|.+. +......
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 113 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEV 113 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence 34579999999999999999999987643 22334443344444444554 5689999999763 2223445
Q ss_pred cccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccc
Q 032789 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQR 121 (133)
Q Consensus 79 ~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~ 121 (133)
.++++|++|+|+|+++..++.. ..|...++.. +.|+++..
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~~--~~piilV~ 153 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATD-EAVARVLRRS--GKPVILAA 153 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEE
Confidence 6889999999999998766543 3455555543 44555543
No 150
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.62 E-value=2.5e-16 Score=100.81 Aligned_cols=112 Identities=27% Similarity=0.419 Sum_probs=93.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
.+..+.++|..++|||||.+....+.+.+.-.++.|... .+++...+.+.+||.+|+.+|+..|+.+++.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 367889999999999999999999999888888888643 2334456899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC--CCcccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFFS 124 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~~ 124 (133)
|+|.+|++.+...++-+..+..+. ...|.++.+...
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~ 132 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKI 132 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccc
Confidence 999999999888887777776554 456777666543
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.62 E-value=4.7e-15 Score=96.84 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=71.7
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cccCEE
Q 032789 15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYY--RGAAAA 86 (133)
Q Consensus 15 i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~------~~~~~--~~~~~i 86 (133)
++|.+|||||||++++.+..+.....+..+.+.....+.+++ ..+.+||+||+..+... ...++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765544445444555555555654 57899999998776542 34444 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
++|+|.+++++. ..|...+.+......+++.++|.+
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHcCCCEEEEEehhhhc
Confidence 999999886543 245555554444444555555543
No 152
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.61 E-value=4.3e-16 Score=100.54 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=57.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcc-----cccccccccccccCEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-----RYHSLAPMYYRGAAAA 86 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~-----~~~~~~~~~~~~~~~i 86 (133)
||+++|++|||||||++++.++.+. +.++.+.++ .. .+||++|+. .+..... .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999887652 223332221 11 689999973 2333322 47899999
Q ss_pred EEEEECCChhhHHHHHHHHHH
Q 032789 87 IIVYDITNQASFERAKKWVQE 107 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~ 107 (133)
++|||++++.+++. ..|...
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~ 86 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASI 86 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHh
Confidence 99999999998865 355543
No 153
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.61 E-value=4.9e-15 Score=99.40 Aligned_cols=116 Identities=19% Similarity=0.258 Sum_probs=72.5
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc----------ccc
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHS 74 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----------~~~ 74 (133)
.++....+|+++|.+|+|||||++++.+..+...+.++.+.+........++ .+.+||+||... +..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 3567889999999999999999999998765444444444443333333332 689999999532 222
Q ss_pred ccccccc---ccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 75 LAPMYYR---GAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 75 ~~~~~~~---~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
....+++ .++++++|+|.+++-+..+. .++..+........+++.++|.
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~~~pviiv~nK~D~ 141 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRERGIPVLIVLTKADK 141 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHcCCCEEEEEECccc
Confidence 2223343 35799999999876554444 2334444433334444444443
No 154
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.60 E-value=1.7e-14 Score=93.03 Aligned_cols=116 Identities=20% Similarity=0.314 Sum_probs=86.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCC--cccCceeeeEEEEEEE-ECCeEEEEEEEeCCCcccc-cccccccccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE--FQESTIGAAFFSQTLA-VNDATVKFEIWDTAGQERY-HSLAPMYYRG 82 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~d~~g~~~~-~~~~~~~~~~ 82 (133)
-.+..|++++|..+||||++++++.-+.... ++.+++.. .+...+. .++..-.+.+|||.|.... ..+.+.++.-
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 3467899999999999999999988665443 44455543 3333333 3455568999999997766 5577888999
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 83 AAAAIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 83 ~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
+|++++||+..|++||+.+.-...+|..+. -.+|+++..+.
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~ 127 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANK 127 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEech
Confidence 999999999999999999876655565543 45676666554
No 155
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.59 E-value=1.1e-14 Score=96.66 Aligned_cols=96 Identities=19% Similarity=0.121 Sum_probs=65.0
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc----cccc---cccccccCEE
Q 032789 15 LLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HSLA---PMYYRGAAAA 86 (133)
Q Consensus 15 i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~----~~~~---~~~~~~~~~i 86 (133)
++|++|||||||++++.+.+.. ..+.. ...+.....+.++ ...++.+||+||..+. .... ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPF-TTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCc-eeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 5899999999999999987642 22211 1122222233333 1467899999997431 2222 2246779999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHHhC
Q 032789 87 IIVYDITNQ------ASFERAKKWVQELQAQG 112 (133)
Q Consensus 87 v~v~d~~~~------~s~~~~~~~~~~i~~~~ 112 (133)
++|+|++++ .++++++.|...+..+.
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYD 110 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhh
Confidence 999999998 58888988888887553
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.59 E-value=1.1e-14 Score=110.22 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=70.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMY 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~--------~~~~ 79 (133)
..+||+++|.+|||||||++++.+.+.. ....+....++....+.+++ .++.+|||+|..++... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999987642 22234444445555566655 67899999998654332 2235
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHH
Q 032789 80 YRGAAAAIIVYDITNQASFERAKKWVQ 106 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~~~~~~ 106 (133)
++.+|++++|+|++++.++++...|..
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~ 318 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE 318 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh
Confidence 788999999999999988887665554
No 157
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.59 E-value=2.6e-14 Score=92.96 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMYYR 81 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~--------~~~~~~ 81 (133)
++|+++|++|+||||+++++.+.... ....+....+........++ .++.+||++|...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987542 12223333333344444443 68899999997655432 224567
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHH
Q 032789 82 GAAAAIIVYDITNQASFERAKKWVQ 106 (133)
Q Consensus 82 ~~~~iv~v~d~~~~~s~~~~~~~~~ 106 (133)
.+|++++|+|++++.+....+.|..
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~ 104 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL 104 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh
Confidence 8999999999999887777665443
No 158
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=1.7e-14 Score=105.48 Aligned_cols=102 Identities=21% Similarity=0.075 Sum_probs=70.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc----ccccc---cccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HSLAP---MYYR 81 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~----~~~~~---~~~~ 81 (133)
...|.++|.+|||||||++++...+.. ..++.+ ........+.+. ...++.+||+||..+- ..+.. ..++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfT-T~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT-TLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCc-eeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 357899999999999999999875433 222222 222222333332 2357999999996321 11222 2456
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHHHhCC
Q 032789 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGI 113 (133)
Q Consensus 82 ~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~ 113 (133)
.++++++|+|+++++++++++.|.+++..+.+
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~ 267 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSP 267 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhh
Confidence 79999999999998899999999999987654
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=1.4e-14 Score=110.31 Aligned_cols=113 Identities=18% Similarity=0.203 Sum_probs=78.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc----------ccccc-
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLA- 76 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----------~~~~~- 76 (133)
..+||+++|.+|||||||++++++.... .+..++.+.+.....+..++ ..+.+|||+|..+ +....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987643 33334444544455555665 4568999999532 22111
Q ss_pred cccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 77 ~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
...++.+|++++|+|++++.+++.++ ++..+.+....+.+++.++|.
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~~~piIiV~NK~Dl 334 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIEAGRALVLAFNKWDL 334 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHcCCCEEEEEECccc
Confidence 23578999999999999998888774 566666544444555555554
No 160
>PRK15494 era GTPase Era; Provisional
Probab=99.57 E-value=1.4e-14 Score=106.16 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=65.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCcee--eeEEEEEEEECCeEEEEEEEeCCCccc-cccccc-------
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG--AAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAP------- 77 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~~~~------- 77 (133)
++..+|+++|.+|||||||++++.+.++.. ..+..+ .+.....+..++ .++.+|||||..+ +.....
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 456799999999999999999999887652 112221 122233344444 5789999999743 222221
Q ss_pred ccccccCEEEEEEECCChhhHHHHH-HHHHHHHHh
Q 032789 78 MYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQ 111 (133)
Q Consensus 78 ~~~~~~~~iv~v~d~~~~~s~~~~~-~~~~~i~~~ 111 (133)
..+.++|++++|+|.++ ++++.. .|++.+.+.
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~ 159 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL 159 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc
Confidence 23678999999999665 555554 566666553
No 161
>PRK04213 GTP-binding protein; Provisional
Probab=99.57 E-value=3.3e-15 Score=101.73 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=56.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCC-----------cccccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG-----------QERYHS 74 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g-----------~~~~~~ 74 (133)
++...++|+++|.+|||||||++++.+..+...+.++. ++....+... .+.+||++| ++.+..
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence 44567899999999999999999999887655444433 3333333222 689999999 344544
Q ss_pred cccccc----cccCEEEEEEECCC
Q 032789 75 LAPMYY----RGAAAAIIVYDITN 94 (133)
Q Consensus 75 ~~~~~~----~~~~~iv~v~d~~~ 94 (133)
.+..++ ..++++++|+|.++
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKS 102 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCcc
Confidence 433343 34567788887754
No 162
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.57 E-value=2.2e-14 Score=99.79 Aligned_cols=109 Identities=16% Similarity=0.255 Sum_probs=71.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEE-CCeEEEEEEEeCCCcccccc-----cccccccccCE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHS-----LAPMYYRGAAA 85 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~~~~-----~~~~~~~~~~~ 85 (133)
||+++|++++||||+.+.+..+-.+. .....+.+.......+ ....+.+++||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-hccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999887776653332 2233333332222233 12347999999999976543 34667999999
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHHHhCCCccccccc
Q 032789 86 AIIVYDITNQ---ASFERAKKWVQELQAQGIHIQSLLQR 121 (133)
Q Consensus 86 iv~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~l~~ 121 (133)
+|+|+|+.+. +.+..+...++.+.+..|++.+.+..
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfi 118 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFI 118 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 9999999943 44555667888888889988766544
No 163
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.56 E-value=2e-14 Score=99.03 Aligned_cols=113 Identities=16% Similarity=0.269 Sum_probs=76.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcc-----------------cCceeeeEEEEEEE--E---CCeEEEEEEEeCCCc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----------------ESTIGAAFFSQTLA--V---NDATVKFEIWDTAGQ 69 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~l~d~~g~ 69 (133)
+|+++|..++|||||+++++........ +...+.+....... . ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999975433210 01122222222111 1 345688999999999
Q ss_pred ccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 70 ~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
.++.......+..+|++++|+|+++..+++. +.|+...........+++.+.|.+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccC
Confidence 9988777888999999999999988766543 455555544433344555555543
No 164
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.56 E-value=4.1e-14 Score=100.78 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC--cccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIE--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYR 81 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~--------~~~~~~~ 81 (133)
+|+++|.+|||||||++++.+.+... ....+... . ...+... ...++.+|||||...... .....++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~-i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-R-ISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-c-EEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999987542 11122211 1 1222222 235799999999754311 1234578
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 82 ~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
++|++++|+|.++..+.+ ..+++.+.+.......+++++|.
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~~~p~ilV~NK~Dl 119 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQNLKRPVVLTRNKLDN 119 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHhcCCCEEEEEECeeC
Confidence 899999999999877665 45555555543334444444443
No 165
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.55 E-value=3.9e-14 Score=94.88 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccC----------------ceeeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQES----------------TIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~ 75 (133)
+|+++|.+|+|||||++++.+......... .............. ...+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 489999999999999999998766543311 11112222223333 468999999999888777
Q ss_pred ccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 76 ~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+...++.+|++++|+|.+++.+.+ ..+++..+........+++.++|.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~i~iv~nK~D~ 126 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIAREGGLPIIVAINKIDR 126 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHHCCCCeEEEEECCCC
Confidence 788889999999999998866543 334555555544444555555554
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.55 E-value=2.5e-14 Score=111.42 Aligned_cols=113 Identities=14% Similarity=0.198 Sum_probs=80.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-------CCCccc------CceeeeEEEEEEE--E---CCeEEEEEEEeCCCccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQE------STIGAAFFSQTLA--V---NDATVKFEIWDTAGQER 71 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~-------~~~~~~------~~~~~~~~~~~~~--~---~~~~~~~~l~d~~g~~~ 71 (133)
.-+++++|..++|||||+++++... +...+. ...|.++....+. + ++..+.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999998642 111111 1234444443332 2 45568999999999999
Q ss_pred ccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
|...+...++.+|++++|+|+++..+++....|...+.. .....++++++|
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~-~ipiIiViNKiD 133 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN-DLEIIPVINKID 133 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc-CCCEEEEEECcC
Confidence 988888899999999999999998888887777665543 222334444444
No 167
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.54 E-value=8e-14 Score=108.31 Aligned_cols=88 Identities=17% Similarity=0.213 Sum_probs=69.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
.+..+|+++|..++|||||++++.+.++...+..+++.+.....+..++. ..+.+|||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 45689999999999999999999988777655444444444444444332 27899999999999888888899999999
Q ss_pred EEEECCChh
Q 032789 88 IVYDITNQA 96 (133)
Q Consensus 88 ~v~d~~~~~ 96 (133)
+|+|+++..
T Consensus 164 LVVda~dgv 172 (587)
T TIGR00487 164 LVVAADDGV 172 (587)
T ss_pred EEEECCCCC
Confidence 999998743
No 168
>PRK11058 GTPase HflX; Provisional
Probab=99.54 E-value=5.1e-14 Score=105.87 Aligned_cols=113 Identities=20% Similarity=0.155 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc--cccc------cccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY--HSLA------PMYYRG 82 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~--~~~~------~~~~~~ 82 (133)
++|+++|.+|||||||++++.+.+......+..+.+.....+...+ ...+.+|||+|..+. ...+ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 6899999999999999999998765432333333444444455543 126789999997331 1111 123688
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCcc--cccccccc
Q 032789 83 AAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQ--SLLQRFFS 124 (133)
Q Consensus 83 ~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~--~~l~~~~~ 124 (133)
+|++++|+|++++.+++.+..|...+.+.. .+.| ++++++|.
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL 321 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDM 321 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccC
Confidence 999999999999988888765444443321 2344 44444443
No 169
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.54 E-value=3.2e-14 Score=96.41 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC-------CCCCcccCceeeeEEEEEEEEC------------CeEEEEEEEeCCCccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG-------QFIEFQESTIGAAFFSQTLAVN------------DATVKFEIWDTAGQER 71 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~d~~g~~~ 71 (133)
++|+++|+.++|||||+++++.. ....+..+....+.....+.+. .....+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 1111111222222222222222 2357899999999876
Q ss_pred ccccccccccccCEEEEEEECCChhhHHHHH
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK 102 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~ 102 (133)
+..........+|++++|+|+++....+..+
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~ 111 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE 111 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHH
Confidence 5433334456789999999998855444443
No 170
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=7e-14 Score=92.60 Aligned_cols=107 Identities=29% Similarity=0.467 Sum_probs=81.5
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCC--------cc----cCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 032789 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIE--------FQ----ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (133)
Q Consensus 3 ~~~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 70 (133)
....+....||+++|+-++||||++++++...... ++ ..+...++..... ..+..++++++|||+
T Consensus 3 ~~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~ 79 (187)
T COG2229 3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQE 79 (187)
T ss_pred cccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcH
Confidence 44566788999999999999999999999775311 11 1233334333332 233689999999999
Q ss_pred cccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCC
Q 032789 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGI 113 (133)
Q Consensus 71 ~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~ 113 (133)
+|+.+|...++.+.+.++++|.+.+..+ +.+..+..+....+
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~ 121 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP 121 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC
Confidence 9999999999999999999999999888 66677776665543
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.53 E-value=2e-13 Score=89.95 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=70.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-----------AP 77 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~-----------~~ 77 (133)
.++|+++|.+|+|||||++++.+..... ...+..........+..++ ..+.+||++|..+.... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4689999999999999999998865321 1222222222223334444 46789999997543211 11
Q ss_pred ccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 78 ~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
..+..+|++++|+|.+++.+.... .++..+........+++.+++.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~iiv~nK~Dl 125 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILEEGKALVIVVNKWDL 125 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHhcCCCEEEEEecccc
Confidence 245689999999999998776554 3444444444444555555554
No 172
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.53 E-value=6.4e-14 Score=91.16 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=67.1
Q ss_pred EEEcCCCCCHHHHHHHHHhCCC--CCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccccc
Q 032789 14 VLLGDVGAGKSSLVLRFVKGQF--IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYRGA 83 (133)
Q Consensus 14 ~i~G~~~vGKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~--------~~~~~~~~~ 83 (133)
+++|.+|||||||++++.+... .... +..+.+........++ ..+.+||+||...+.. .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDT-PGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCC-CCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 4799999999999999998652 2222 2222223333444444 6899999999887543 234567889
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 84 AAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 84 ~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|++++|+|..++.+.... .....+++......+++.+++.
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHhcCCCEEEEEECccc
Confidence 999999999876544432 2333344434444444444443
No 173
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.8e-14 Score=93.99 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=90.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
.+.-|++++|..|+|||||++++-+++... +.||.. ..+.++.+.+ ++++.+|.+|+....+.|+.++..+|++|
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 466799999999999999999998765544 333332 2344455555 89999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh--CCCcccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFFS 124 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~ 124 (133)
+.+|+.|.+.|++.++-++.+..- ..++|.++.++..
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKI 131 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKI 131 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccc
Confidence 999999999999999777777443 3678888777654
No 174
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.52 E-value=2.1e-13 Score=89.60 Aligned_cols=108 Identities=21% Similarity=0.198 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc------cccc--ccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMY--YRG 82 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~------~~~~--~~~ 82 (133)
++|+++|.||||||||+|++.+.+..-...+....+.....+.+.+ ..+.++|+||....... ...+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999876655556666666666666666 78999999995433221 1222 367
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 83 AAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 83 ~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
.|+++.|.|.++.+ .-.+...++.+......+++..+|
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~g~P~vvvlN~~D 116 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLELGIPVVVVLNKMD 116 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHHTTSSEEEEEETHH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHHcCCCEEEEEeCHH
Confidence 99999999998743 333456666665544555554444
No 175
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.52 E-value=8.4e-14 Score=94.22 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=61.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSL 75 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~----------~~~~~ 75 (133)
+....++|+++|++|||||||+++++++++...+.++.+.+........ ..++.+||+||.. ++...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 4557789999999999999999999988765555555554433332222 3689999999943 22222
Q ss_pred ccccccc---cCEEEEEEECCChhhH
Q 032789 76 APMYYRG---AAAAIIVYDITNQASF 98 (133)
Q Consensus 76 ~~~~~~~---~~~iv~v~d~~~~~s~ 98 (133)
...+++. .+++++++|.+++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~ 122 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKE 122 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCH
Confidence 3334443 4678888998875443
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.51 E-value=1.4e-13 Score=103.77 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=65.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMYYR 81 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--------~~~~~~~~~~ 81 (133)
.+|+++|.+|||||||++++.+.+.. ....+..+.+.....+.+++ ..+.+|||+|.+. +.......+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 12223333444445555555 7899999999876 2222345678
Q ss_pred ccCEEEEEEECCChhhHH--HHHHHHHH
Q 032789 82 GAAAAIIVYDITNQASFE--RAKKWVQE 107 (133)
Q Consensus 82 ~~~~iv~v~d~~~~~s~~--~~~~~~~~ 107 (133)
++|++++|+|.+++.+.. ++..|+..
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~ 107 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK 107 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999998853332 33455543
No 177
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.50 E-value=8.9e-14 Score=97.39 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-------------cc---cCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIE-------------FQ---ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~ 75 (133)
+|.++|..++|||||+++++...-.. .+ +...+.+.......+.....++.+||+||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999998631110 00 112222333333333334478999999999998887
Q ss_pred ccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 76 ~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
....++.+|++++|+|.++.... +.+.|+..+.+......++++++|.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~~~P~iivvNK~D~ 128 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKLNIPTIIFVNKIDR 128 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHcCCCEEEEEECccc
Confidence 88899999999999999986543 4456666665544333344444443
No 178
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.50 E-value=1.4e-16 Score=105.55 Aligned_cols=118 Identities=34% Similarity=0.653 Sum_probs=100.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccccC
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
.+...+|+.++|..++|||++++++....++..|..++|.++..+.+..+. .-++++|||..||+++..+..-++++++
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 345678999999999999999999999999999999999988777666654 3467899999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHh-----CCCccccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQ-----GIHIQSLLQRFF 123 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~~~~l~~~~ 123 (133)
+..+|||+++...|+....|.+++... ....|+++.-|.
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllank 144 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANK 144 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccch
Confidence 999999999999999999999998543 234455555443
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.50 E-value=5e-13 Score=100.61 Aligned_cols=114 Identities=17% Similarity=0.181 Sum_probs=75.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA---------- 76 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~---------- 76 (133)
...+|++++|.++||||||++++++.... ....+....+.....+..++ ..+.+||++|..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 34689999999999999999999986532 12223333333333344444 478999999976543321
Q ss_pred -cccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 77 -PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 77 -~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
...++.+|++++|+|++++.+.+..+ ++..+.+......++++++|.
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~~~~iiiv~NK~Dl 295 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILEAGKALVIVVNKWDL 295 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHcCCcEEEEEECccc
Confidence 23578899999999999987777654 445555544445555555554
No 180
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.49 E-value=2e-13 Score=99.70 Aligned_cols=101 Identities=20% Similarity=0.111 Sum_probs=68.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---cc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HSLAPMY---YR 81 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~----~~~~~~~---~~ 81 (133)
...|.++|.++||||||++++...+.. ..++.+. .......+.++ ...++.+||+||..+- ..+...+ ++
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT-~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTT-LVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc-cCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 357899999999999999999976532 2222221 11222223333 2368899999997432 1222333 45
Q ss_pred ccCEEEEEEECCCh---hhHHHHHHHHHHHHHhC
Q 032789 82 GAAAAIIVYDITNQ---ASFERAKKWVQELQAQG 112 (133)
Q Consensus 82 ~~~~iv~v~d~~~~---~s~~~~~~~~~~i~~~~ 112 (133)
.++++++|+|+++. +++++++.|.+++....
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~ 268 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS 268 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh
Confidence 69999999999987 78888888888887653
No 181
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.49 E-value=2e-13 Score=102.74 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=68.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeeeEEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMYYRG 82 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~--------~~~~~~~~~~~~ 82 (133)
+|+++|.+|||||||++++.+.+... ...+....+........++ ..+.+|||||.. .+.......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876421 1223333334444444554 579999999963 233345567889
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 83 AAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 83 ~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
+|++++|+|..+..+... ..+...+++.......++.+++
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~~~~piilVvNK~D 118 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRKSGKPVILVANKID 118 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHHhCCCEEEEEECcc
Confidence 999999999987543332 1233333333333333444444
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.48 E-value=3.8e-13 Score=107.14 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=69.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
..+...|+++|..++|||||++++...++.......+..+.....+.+++ ..+.+|||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 44678999999999999999999988777654444443333334444444 6789999999999998888889999999
Q ss_pred EEEEECCCh
Q 032789 87 IIVYDITNQ 95 (133)
Q Consensus 87 v~v~d~~~~ 95 (133)
|+|+|+++.
T Consensus 365 ILVVdAddG 373 (787)
T PRK05306 365 VLVVAADDG 373 (787)
T ss_pred EEEEECCCC
Confidence 999999884
No 183
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.48 E-value=4.4e-13 Score=87.57 Aligned_cols=113 Identities=14% Similarity=0.112 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYR 81 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~--------~~~~~~~ 81 (133)
..+|+++|++|+|||||++++.+.+......... ................+.+||++|...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ-TTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCC-ceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999876532111111 111111111222347899999999654322 2234578
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 82 ~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
.+|++++|+|.+++.+ +....+...+.+......+++.++|.
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl 123 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKKSKTPVILVLNKIDL 123 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHHhCCCEEEEEEchhc
Confidence 8999999999998721 12233444454443444455555554
No 184
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.47 E-value=1.9e-12 Score=92.57 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=47.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCc----------ccCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 69 (133)
...++|+++|.+|+|||||++++++...... ..++.+.......+..++..+++.+|||||-
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 4578999999999999999999998876543 2344444445555556777789999999993
No 185
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.2e-13 Score=90.80 Aligned_cols=110 Identities=23% Similarity=0.297 Sum_probs=83.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC---CCC----CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKG---QFI----EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~ 80 (133)
...+-++|+|..++||||++.+.-.. .+- .+-.++.|.......+ . ..++.+||..|++..+++|..++
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHH
Confidence 35678999999999999999887532 111 1233555654444433 3 36899999999999999999999
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHHHh--CCCccccccc
Q 032789 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQR 121 (133)
Q Consensus 81 ~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~ 121 (133)
..+|++++++|.++++.|++...-++.+.++ ...+|+++.-
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~la 133 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLA 133 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhc
Confidence 9999999999999999999998777777444 4566766543
No 186
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.46 E-value=4.9e-13 Score=104.06 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh---CCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK---GQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
+.|+++|..++|||||++++.+ ..+.+++..+.+.+.....+..++ ..+.+||+||+++|.......+..+|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 3689999999999999999986 334445555666666555566655 78999999999998877777889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhC-CCccccccccccc
Q 032789 88 IVYDITN---QASFERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 88 ~v~d~~~---~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
+|+|+++ +.+++.+. .+.... ++..++++++|..
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHHcCCCeEEEEEECCCCC
Confidence 9999998 44544432 232222 3355666666653
No 187
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.46 E-value=1.1e-12 Score=82.04 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---------HSLAPMYYR 81 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~---------~~~~~~~~~ 81 (133)
+|+++|.+|+|||||++.+++.+... ...+..........+..++ ..+.++|+||-..- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999854321 1112222222334445555 56679999995321 111223348
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHH
Q 032789 82 GAAAAIIVYDITNQASFERAKKWVQEL 108 (133)
Q Consensus 82 ~~~~iv~v~d~~~~~s~~~~~~~~~~i 108 (133)
.+|++++|+|.+++.. +.....+.++
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l 104 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILREL 104 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHH
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHH
Confidence 8999999999877422 2333444444
No 188
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.46 E-value=6.1e-13 Score=94.66 Aligned_cols=113 Identities=15% Similarity=0.196 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-C----------------ccc---CceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-E----------------FQE---STIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 70 (133)
-+|+++|..++|||||+++++...-. . .+. ...+.++......+.....++.+||+||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999842110 0 000 011233333333444445899999999999
Q ss_pred cccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 71 ~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+|.......++.+|++++|+|.++.... +.+.++...........+++++++.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~~~~P~iivvNK~D~ 135 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRLRGIPIITFINKLDR 135 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHhcCCCEEEEEECCcc
Confidence 8876666678999999999999875432 2334555444433333444455443
No 189
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.45 E-value=1.7e-12 Score=90.75 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=63.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-------cccccccccC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-------LAPMYYRGAA 84 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-------~~~~~~~~~~ 84 (133)
+++++|.+|||||||++++.+........+....+.....+.+++ ..+++||+||..+... .....++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998653221111111222333444444 7899999999754321 1234688999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHH
Q 032789 85 AAIIVYDITNQA-SFERAKKWVQEL 108 (133)
Q Consensus 85 ~iv~v~d~~~~~-s~~~~~~~~~~i 108 (133)
++++|+|+++++ ..+.+.+.++..
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~ 104 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGV 104 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHc
Confidence 999999998865 455555555443
No 190
>PRK10218 GTP-binding protein; Provisional
Probab=99.45 E-value=7.1e-13 Score=103.31 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=82.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh--CCCCCcc------------cCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK--GQFIEFQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS 74 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~ 74 (133)
...||+++|..++|||||+++++. +.+.... +.+.+.++......+....+++.+||+||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 356899999999999999999996 3332211 23445555555555555568999999999999998
Q ss_pred cccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 75 ~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
.+...++.+|++++|+|+++....+ .+.++..+.+......++++++|.+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~~gip~IVviNKiD~~ 133 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFAYGLKPIVVINKVDRP 133 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHHcCCCEEEEEECcCCC
Confidence 8889999999999999998754333 3344444444433344556666654
No 191
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.45 E-value=3.3e-13 Score=106.72 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=68.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeE--EEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.+..+|+++|..++|||||++++....+......+...+. ....+..++....+.+|||||++.|...+...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4567999999999999999999998776654333332222 22223333445899999999999999888889999999
Q ss_pred EEEEEECCChh
Q 032789 86 AIIVYDITNQA 96 (133)
Q Consensus 86 iv~v~d~~~~~ 96 (133)
+|+|+|+++..
T Consensus 322 aILVVDA~dGv 332 (742)
T CHL00189 322 AILIIAADDGV 332 (742)
T ss_pred EEEEEECcCCC
Confidence 99999998743
No 192
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.45 E-value=1.9e-12 Score=103.38 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=76.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc----------cc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA----------PM 78 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~----------~~ 78 (133)
+..+|+++|++|||||||+|++.+.+......+. .+...++-.+.....++.+||+||..++.... ..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pG--vTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAG--VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCC--ceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 3578999999999999999999987554333333 33333333334445789999999987764321 11
Q ss_pred c--ccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 79 Y--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 79 ~--~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+ .+++|++++|+|.++.+. ...|..++.+......++++++|..
T Consensus 80 ~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 80 YILSGDADLLINVVDASNLER---NLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred HHhccCCCEEEEEecCCcchh---hHHHHHHHHHcCCCEEEEEEchhhh
Confidence 2 247899999999988543 2346666766666666666667654
No 193
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.44 E-value=1.5e-12 Score=97.71 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=67.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMY---YRG 82 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----~~~~~~~~---~~~ 82 (133)
..|.++|.+|||||||++++.+.+.. ..++.+. .......+.+. ...++.+||+||..+ ...+...+ ++.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTT-l~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTT-LVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcce-eceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 38999999999999999999986532 1222221 11122222232 136799999999632 11222333 456
Q ss_pred cCEEEEEEECCCh---hhHHHHHHHHHHHHHhCC
Q 032789 83 AAAAIIVYDITNQ---ASFERAKKWVQELQAQGI 113 (133)
Q Consensus 83 ~~~iv~v~d~~~~---~s~~~~~~~~~~i~~~~~ 113 (133)
++++++|+|+++. +++++...|.+++..+.+
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~ 270 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP 270 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhch
Confidence 8999999999864 678888888888877543
No 194
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.43 E-value=1.3e-12 Score=84.36 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=70.8
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc-------cccccccCEE
Q 032789 15 LLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------PMYYRGAAAA 86 (133)
Q Consensus 15 i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~-------~~~~~~~~~i 86 (133)
++|+.|+|||||++++.+.... ................... ....+.+||++|........ ...++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976544 2222222222222222222 14689999999987654433 3477889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
++|+|.++..+..... |............+++.+++.+
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHhcCCeEEEEEEccccC
Confidence 9999999987776665 5555555444445555555543
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.43 E-value=1.5e-12 Score=103.47 Aligned_cols=108 Identities=20% Similarity=0.151 Sum_probs=69.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeeeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMY 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--------~~~~~~~~ 79 (133)
...+|+++|.++||||||++++++.+... ...++.+.+........++ ..+.+|||+|.+. +.......
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 45789999999999999999999875421 2223333333333333333 6789999999763 12233445
Q ss_pred ccccCEEEEEEECCChhhHHHH-HHHHHHHHHhCCCcccccccc
Q 032789 80 YRGAAAAIIVYDITNQASFERA-KKWVQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~ 122 (133)
++.+|++|+|+|.++.- ... ..|...++.. +.|+++..+
T Consensus 352 ~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~~--~~pvIlV~N 391 (712)
T PRK09518 352 VSLADAVVFVVDGQVGL--TSTDERIVRMLRRA--GKPVVLAVN 391 (712)
T ss_pred HHhCCEEEEEEECCCCC--CHHHHHHHHHHHhc--CCCEEEEEE
Confidence 78899999999998632 222 2566666553 445555443
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.43 E-value=8.3e-13 Score=104.98 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=74.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSL-A 76 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----------~~~~-~ 76 (133)
...||+++|.+|||||||++++.+.+.. ....+..+.+.....+.+++ ..+.+|||+|..+ +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 22223333444444455555 4567999999542 1111 1
Q ss_pred cccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 77 ~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
...++.+|++++|+|+++..+++.++ ++..+.+......++++++|.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~~~piIiV~NK~DL 573 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVDAGRALVLVFNKWDL 573 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHcCCCEEEEEEchhc
Confidence 23468899999999999988888775 445555544444444455543
No 197
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.41 E-value=4.1e-12 Score=95.89 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=74.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC-CCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL----------- 75 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~----------- 75 (133)
...++|+++|.+++|||||++++++... .....+....+.....+..++ ..+.+|||+|..+....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3579999999999999999999997642 222233333333333333444 57889999996432211
Q ss_pred ccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 76 ~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
....++.+|++++|+|++++.+.+... ++..+.+......++++++|.
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~~~~~ivv~NK~Dl 296 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALEAGRALVIVVNKWDL 296 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHcCCcEEEEEECccC
Confidence 123577899999999999987766653 444555544445555555553
No 198
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.41 E-value=1e-12 Score=102.57 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=78.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----c------ccCceeeeEEEEEEE--E---CCeEEEEEEEeCCCcc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQ--FIE-----F------QESTIGAAFFSQTLA--V---NDATVKFEIWDTAGQE 70 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~--~~~-----~------~~~~~~~~~~~~~~~--~---~~~~~~~~l~d~~g~~ 70 (133)
..-+++++|..++|||||+.+++... ... . .+...|.++....+. + ++..+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 44589999999999999999998632 110 0 012223333332222 2 4456899999999999
Q ss_pred cccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 71 ~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+|...+...++.+|++|+|+|+++....+....|...... .....+++++.|.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~-~lpiIvViNKiDl 138 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-DLEIIPVLNKIDL 138 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCC
Confidence 9988888899999999999999987777777777654432 2223444444443
No 199
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.41 E-value=1.2e-12 Score=101.73 Aligned_cols=93 Identities=22% Similarity=0.235 Sum_probs=65.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCccc----CceeeeEEEEEEEE------------CCeEEEEEEEeCCCccccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIGAAFFSQTLAV------------NDATVKFEIWDTAGQERYH 73 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~l~d~~g~~~~~ 73 (133)
..-|+++|..++|||||++++.+..+..... +++|..+....... +.....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 4569999999999999999999887654322 22333222111100 0001238899999999998
Q ss_pred ccccccccccCEEEEEEECCC---hhhHHHHH
Q 032789 74 SLAPMYYRGAAAAIIVYDITN---QASFERAK 102 (133)
Q Consensus 74 ~~~~~~~~~~~~iv~v~d~~~---~~s~~~~~ 102 (133)
..+...++.+|++++|+|+++ +.+++.+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~ 115 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN 115 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH
Confidence 888888999999999999997 55555443
No 200
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.41 E-value=2e-13 Score=91.53 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=61.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccc---ccccC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMY---YRGAA 84 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~~~~~~~~~---~~~~~ 84 (133)
++..|+++|++|+|||+|..+|..++..+...+- .... .... ....-.+.+.|+|||.+.+...... .+.+.
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k 77 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK 77 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence 4567999999999999999999999766544333 1111 1111 2234578999999999987644443 77899
Q ss_pred EEEEEEECCC-hhhHHHHHHHHHHHHH
Q 032789 85 AAIIVYDITN-QASFERAKKWVQELQA 110 (133)
Q Consensus 85 ~iv~v~d~~~-~~s~~~~~~~~~~i~~ 110 (133)
+||+|+|.+. +....++-+++-.+..
T Consensus 78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~ 104 (181)
T PF09439_consen 78 GIIFVVDSSTDQKELRDVAEYLYDILS 104 (181)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCccchhhHHHHHHHHHHHHH
Confidence 9999999974 4556665555555533
No 201
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.41 E-value=1e-12 Score=91.20 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--Cc------------ccCceeeeEE--EEEEEEC--------CeEEEEEEEeCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFI--EF------------QESTIGAAFF--SQTLAVN--------DATVKFEIWDTA 67 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~--~~------------~~~~~~~~~~--~~~~~~~--------~~~~~~~l~d~~ 67 (133)
+|+++|..++|||||+.+|+...-. .. .+...|.+.. ...+.+. +..+.+.+||+|
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999854211 00 0011111111 1122222 336889999999
Q ss_pred CcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 68 g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
|+.+|.......++.+|++++|+|+++..+.+....|...... .....+++.++|
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~~p~ilviNKiD 136 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-RVKPVLVINKID 136 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-CCCEEEEEECCC
Confidence 9999988888899999999999999987766654444333322 222334444444
No 202
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.40 E-value=1.3e-12 Score=101.85 Aligned_cols=113 Identities=15% Similarity=0.251 Sum_probs=80.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC--CCCCcc------------cCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG--QFIEFQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP 77 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~ 77 (133)
+|+++|..++|||||+.+++.. .+.... +...|.++......+....+++.+|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 222211 12234444444333333348999999999999988888
Q ss_pred ccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 78 ~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
..++.+|++++|+|+++.. ..+.+.|+..+.+......+++++.|..
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~~ip~IVviNKiD~~ 129 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALELGLKPIVVINKIDRP 129 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 8999999999999998743 4555677777776554445556666543
No 203
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.40 E-value=1.6e-12 Score=89.36 Aligned_cols=85 Identities=25% Similarity=0.223 Sum_probs=56.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-Cc----------------------------ccCceeeeEEEEEEEECCeEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFI-EF----------------------------QESTIGAAFFSQTLAVNDATVKFE 62 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~-~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 62 (133)
+|+++|.+++|||||+++++...-. .. .+...|.+.......+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999753211 10 000112222222222222346889
Q ss_pred EEeCCCcccccccccccccccCEEEEEEECCChh
Q 032789 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA 96 (133)
Q Consensus 63 l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~ 96 (133)
+|||||+++|.......++.+|++++|+|+++..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~ 114 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV 114 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc
Confidence 9999999887655555688999999999998753
No 204
>PRK00089 era GTPase Era; Reviewed
Probab=99.39 E-value=2.6e-12 Score=92.37 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=67.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcc-cCceeeeEEEEEEEECCeEEEEEEEeCCCccccc--------cccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SLAPMY 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~--------~~~~~~ 79 (133)
+.-.|+++|.+|||||||++++.+.+..... .+..... ....+... ...++.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~-~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRH-RIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccc-cEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 5567999999999999999999987654311 1111111 11112121 23789999999964432 122335
Q ss_pred ccccCEEEEEEECCChhhHHHH-HHHHHHHHHhCCCccccccccccc
Q 032789 80 YRGAAAAIIVYDITNQASFERA-KKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+.++|++++|+|+++. +.+. ...+..+........+++.+.|..
T Consensus 82 ~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 82 LKDVDLVLFVVDADEK--IGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred HhcCCEEEEEEeCCCC--CChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 7789999999999883 2222 233333433223344445555543
No 205
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.39 E-value=2.3e-12 Score=97.19 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=65.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhC--CCC-----------------------------CcccCceeeeEEEEEEEE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG--QFI-----------------------------EFQESTIGAAFFSQTLAV 54 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~ 54 (133)
.+...++|+++|..++|||||+.+++.. ... .+...+.+.+..... +
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~ 80 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--F 80 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--E
Confidence 4566799999999999999999999852 111 011123333333333 3
Q ss_pred CCeEEEEEEEeCCCcccccccccccccccCEEEEEEECCChhhH
Q 032789 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF 98 (133)
Q Consensus 55 ~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~ 98 (133)
......+.+||+||+++|.......+..+|++++|+|+++.+++
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~ 124 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE 124 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc
Confidence 33447899999999998866555567899999999999988643
No 206
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.38 E-value=4.2e-12 Score=95.74 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=73.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCC-C----------------------------cccCceeeeEEEEEEEECCe
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-E----------------------------FQESTIGAAFFSQTLAVNDA 57 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~----------------------------~~~~~~~~~~~~~~~~~~~~ 57 (133)
+...++|+++|..++|||||+++++...-. . ..+...|.+.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 456789999999999999999999843111 0 00112233333333334444
Q ss_pred EEEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHH-HHHHHHHHHHhC-CCccccccccccc
Q 032789 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 58 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~-~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
.+.+.+||+||+++|.......+..+|++++|+|++++..+.. ..+++....... +...+++++.|..
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~ 152 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV 152 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 5889999999998886655555788999999999987322212 223333333322 2344556666543
No 207
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.38 E-value=1.1e-12 Score=88.78 Aligned_cols=116 Identities=21% Similarity=0.227 Sum_probs=78.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCC------------------cccCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE------------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 70 (133)
...+|.++|..++|||||+.+++...... +.............+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 45789999999999999999998543211 011122222233333312345899999999999
Q ss_pred cccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 71 ~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+|.......++.+|++|+|+|+.+....+ ..+.+..+........++++++|..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHTT-SEEEEEETCTSS
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccccccceEEeeeeccch
Confidence 98877777899999999999998764433 3444555555544477777777765
No 208
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.37 E-value=2.1e-12 Score=91.85 Aligned_cols=109 Identities=18% Similarity=0.226 Sum_probs=69.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCccc------------------CceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQE------------------STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~ 73 (133)
+|+++|.+|+|||||+++++......... ...........+..+ .+.+.+||+||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 58999999999999999997532211000 011111112223333 3789999999998887
Q ss_pred ccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 74 ~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
......++.+|++++|+|.++....+...-|. .+........+++++++
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~~~p~iivvNK~D 127 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEAGIPRIIFINKMD 127 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHcCCCEEEEEECCc
Confidence 77778899999999999999876554444443 33333333334444444
No 209
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.36 E-value=4.9e-12 Score=86.23 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=65.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceee---eEEEEEEEECCeEEEEEEEeCCCcccccccc-----ccccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA---AFFSQTLAVNDATVKFEIWDTAGQERYHSLA-----PMYYR 81 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~-----~~~~~ 81 (133)
++||+++|++|||||||++.+.+.....+.....+. +.....+.. .....+.+||++|........ ...+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999999986543322222221 000111111 112368999999975432221 22366
Q ss_pred ccCEEEEEEECCChhhHHHH-HHHHHHHHHhCCCcccccccccc
Q 032789 82 GAAAAIIVYDITNQASFERA-KKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 82 ~~~~iv~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
++|+++++.+ + +|.+. ..|++.+.+...+..+++.++|.
T Consensus 80 ~~d~~l~v~~--~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~ 119 (197)
T cd04104 80 EYDFFIIISS--T--RFSSNDVKLAKAIQCMGKKFYFVRTKVDR 119 (197)
T ss_pred CcCEEEEEeC--C--CCCHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 7888888743 2 24443 36677776665566667777765
No 210
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.35 E-value=7.5e-12 Score=97.64 Aligned_cols=103 Identities=19% Similarity=0.136 Sum_probs=68.6
Q ss_pred cCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc------cccc--ccccCEEEE
Q 032789 17 GDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMY--YRGAAAAII 88 (133)
Q Consensus 17 G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~------~~~~--~~~~~~iv~ 88 (133)
|++|||||||++++.+.+....+.++.+.+.....+..++ .++++||+||+.++... .+.+ .+++|+++.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876544556666555555555555 56899999999876543 2222 246899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|+|.++.+ +..++..++.+......++++++|.
T Consensus 79 VvDat~le---r~l~l~~ql~~~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 79 VVDASNLE---RNLYLTLQLLELGIPMILALNLVDE 111 (591)
T ss_pred EecCCcch---hhHHHHHHHHhcCCCEEEEEehhHH
Confidence 99998743 2234444555443333444444443
No 211
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.35 E-value=5.7e-12 Score=93.92 Aligned_cols=101 Identities=20% Similarity=0.130 Sum_probs=66.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----c---cccccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----L---APMYYRGA 83 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~----~---~~~~~~~~ 83 (133)
..|.++|.+|||||||++++.+.+..-...+..+.....-.+... ...++.++|+||..+-.. + ....++++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 379999999999999999999765432111211111222223332 224689999999643110 1 11247889
Q ss_pred CEEEEEEECC---ChhhHHHHHHHHHHHHHhC
Q 032789 84 AAAIIVYDIT---NQASFERAKKWVQELQAQG 112 (133)
Q Consensus 84 ~~iv~v~d~~---~~~s~~~~~~~~~~i~~~~ 112 (133)
+++++|+|++ +.+.+++++.|++++....
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~ 270 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYS 270 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhh
Confidence 9999999998 5567888888888887754
No 212
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.2e-13 Score=85.85 Aligned_cols=95 Identities=26% Similarity=0.480 Sum_probs=77.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
+..+|+++|..|+|||++..++.-++... ..|++|+ .+..+.+.+ +++++||..|+...++.|+.++.+.|++++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtigf--nve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGF--NVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCc--Ccccccccc--ccceeeEccCcccccHHHHHHhcccceEEE
Confidence 78899999999999999999987766544 4567765 344444544 899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHH
Q 032789 89 VYDITNQASFERAKKWVQEL 108 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i 108 (133)
|+|.+|+...-.....+-.+
T Consensus 92 VVDssd~dris~a~~el~~m 111 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSM 111 (182)
T ss_pred EEeccchhhhhhhHHHHHHH
Confidence 99999987776666444444
No 213
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.35 E-value=5.8e-12 Score=96.00 Aligned_cols=99 Identities=20% Similarity=0.092 Sum_probs=63.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccc---cccccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSL---APMYYR 81 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----~~~~---~~~~~~ 81 (133)
...|+++|.+|||||||++++...+..- .+.. .........+...+ .++.+||+||..+ ...+ .-..++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypf-TTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPF-TTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCc-ccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 4689999999999999999998765432 2222 22222333344444 6899999999532 1111 122357
Q ss_pred ccCEEEEEEECCCh----hhHHHHHHHHHHHHHh
Q 032789 82 GAAAAIIVYDITNQ----ASFERAKKWVQELQAQ 111 (133)
Q Consensus 82 ~~~~iv~v~d~~~~----~s~~~~~~~~~~i~~~ 111 (133)
.+|++|+|+|+++. +.++++..|..++...
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y 269 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAY 269 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHh
Confidence 79999999999853 3555566565555443
No 214
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.35 E-value=1.6e-12 Score=85.74 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=53.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc----cccccccCEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA----PMYYRGAAAAI 87 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~----~~~~~~~~~iv 87 (133)
+|+++|.++||||||++++.+.. .. ...+. ...+... .+||+||.......+ ...++++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc-Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999987543 11 11111 1122221 279999973222111 22378999999
Q ss_pred EEEECCChhhHHHHHHHHHHH
Q 032789 88 IVYDITNQASFERAKKWVQEL 108 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i 108 (133)
+|+|.++.+++ +..|+..+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~ 88 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI 88 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc
Confidence 99999988776 33455554
No 215
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.35 E-value=9.6e-12 Score=96.90 Aligned_cols=95 Identities=23% Similarity=0.256 Sum_probs=64.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCccc----CceeeeEEEEEEEE--CCeE-----E-----EEEEEeCCCccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIGAAFFSQTLAV--NDAT-----V-----KFEIWDTAGQER 71 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~-----~-----~~~l~d~~g~~~ 71 (133)
.+.+.|+++|..++|||||++++.+........ ++.|.++....... .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 355689999999999999999998664433222 22332222111100 0110 1 268999999999
Q ss_pred ccccccccccccCEEEEEEECCC---hhhHHHHH
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITN---QASFERAK 102 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~---~~s~~~~~ 102 (133)
|...+...+..+|++++|+|+++ +.+++.+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~ 117 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN 117 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH
Confidence 98887778889999999999997 66665554
No 216
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.33 E-value=4.9e-12 Score=97.44 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=75.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC--C---------------C---cccCceeeeEEEEEEEECCeEEEEEEEeCC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--I---------------E---FQESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~--~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 67 (133)
.++.+|+++|..++|||||+++++...- . . +.....|.++......+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999973110 0 0 001112333333333333344889999999
Q ss_pred CcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 68 g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|+.+|.......++.+|++|+|+|.++.... +.+.++...........++++++|.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~~~iPiiv~iNK~D~ 143 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRLRDTPIFTFINKLDR 143 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHhcCCCEEEEEECCcc
Confidence 9999887667788999999999999875322 2345555555444334444555554
No 217
>PRK13351 elongation factor G; Reviewed
Probab=99.33 E-value=6.2e-12 Score=99.78 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=76.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCC-------------Cccc---CceeeeEE--EEEEEECCeEEEEEEEeCC
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-------------EFQE---STIGAAFF--SQTLAVNDATVKFEIWDTA 67 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~-------------~~~~---~~~~~~~~--~~~~~~~~~~~~~~l~d~~ 67 (133)
+.....+|+++|..++|||||+++++...-. ..+. ...+.+.. ...+... ...+.+||+|
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtP 81 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTP 81 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECC
Confidence 3446779999999999999999999853210 0000 01111222 2223333 4789999999
Q ss_pred CcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 68 g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
|+.++.......++.+|++++|+|.++..+.+....|. .+.+......++++++|
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~~~p~iiviNK~D 136 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRYGIPRLIFINKMD 136 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhcCCCEEEEEECCC
Confidence 99998888888999999999999999887776665553 34443333334444444
No 218
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.32 E-value=7.9e-12 Score=81.81 Aligned_cols=94 Identities=22% Similarity=0.346 Sum_probs=60.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLAPMYYR 81 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----------~~~~~~~~~~ 81 (133)
.|+++|++|+|||||++.+.++.+......+.+.+........+. .+.+||++|... +......+++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 478999999999999999996655554555555444333333333 889999999433 2222233333
Q ss_pred ---ccCEEEEEEECCChh--hHHHHHHHHHHH
Q 032789 82 ---GAAAAIIVYDITNQA--SFERAKKWVQEL 108 (133)
Q Consensus 82 ---~~~~iv~v~d~~~~~--s~~~~~~~~~~i 108 (133)
..+++++++|.++.. ...++..|+...
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~ 109 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL 109 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc
Confidence 357889999988653 233344565543
No 219
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.31 E-value=1.7e-11 Score=87.46 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC------------------CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFI------------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~ 73 (133)
+|+++|..++|||||+++++...-. .+.......+.....+... ..++.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 5899999999999999999742110 1111222222223333334 3788999999998887
Q ss_pred ccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 74 ~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
..+...++.+|++++|+|..+...-+ .+..+..+........++++++|..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHcCCCEEEEEECCCCC
Confidence 77888999999999999998753322 2344445554443344556666543
No 220
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.31 E-value=1.5e-11 Score=83.76 Aligned_cols=114 Identities=17% Similarity=0.147 Sum_probs=74.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------cccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE--------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~ 75 (133)
.++|.++|..++|||||+++++...... ..+...|.+.......+......+.+.|+||+.+|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4789999999999999999998531000 01112333344444444444568899999999888776
Q ss_pred ccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccccc
Q 032789 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFS 124 (133)
Q Consensus 76 ~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~ 124 (133)
....+..+|++++|+|++....- +.++.+..+.+.. |...+++.+.|.
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 67778899999999999864322 2334444454433 223455666664
No 221
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.30 E-value=1.1e-11 Score=95.44 Aligned_cols=116 Identities=14% Similarity=0.226 Sum_probs=75.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh-CCCCC-------------------cccCceeeeEEEEEEEECCeEEEEEEEeCC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK-GQFIE-------------------FQESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 67 (133)
.+..+|+++|..++|||||+++++. ..... ..+...|.++......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4577999999999999999999863 11110 011122444444444444445899999999
Q ss_pred CcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 68 g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|+.+|.......++.+|++|+|+|.++.- ..+.+.+++..........++++++|.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~~~~PiivviNKiD~ 144 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRLRDTPIFTFMNKLDR 144 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHhcCCCEEEEEECccc
Confidence 99988776667889999999999998742 122345555554433334444444443
No 222
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.30 E-value=1.3e-11 Score=84.55 Aligned_cols=85 Identities=16% Similarity=0.082 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC---CCcccCceeeeEEEEEEEEC---------------------------C----
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQF---IEFQESTIGAAFFSQTLAVN---------------------------D---- 56 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 56 (133)
++|.++|..++|||||++.+.+... ..+.............+... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999965411 11111111111111111100 0
Q ss_pred eEEEEEEEeCCCcccccccccccccccCEEEEEEECCCh
Q 032789 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ 95 (133)
Q Consensus 57 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~ 95 (133)
....+.+||+||++++.......+..+|++++|+|++++
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~ 119 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP 119 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC
Confidence 126789999999998877767778889999999999873
No 223
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.28 E-value=2.6e-11 Score=81.84 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=79.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCc----------cccccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ----------ERYHSL 75 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~----------~~~~~~ 75 (133)
|+....-|+++|.+||||||++|.+++++.......+.|.+.....+.+++ .+.+.|.||- +.+...
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHH
Confidence 455677999999999999999999999875555667777777677776666 4899999992 223333
Q ss_pred ccccccc---cCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 76 APMYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 76 ~~~~~~~---~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
...+++. ..+++++.|+..+..-.+. +.++.+.+...+..+++.++|.-
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~~i~~~vv~tK~DKi 148 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLELGIPVIVVLTKADKL 148 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHcCCCeEEEEEccccC
Confidence 3333333 4688889998764332221 55566666666777777776643
No 224
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.28 E-value=1.6e-11 Score=84.98 Aligned_cols=84 Identities=21% Similarity=0.212 Sum_probs=56.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC---------------------------C--cccCceeeeEEEEEEEECCeEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFI---------------------------E--FQESTIGAAFFSQTLAVNDATVKFE 62 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (133)
+|+++|..++|||||+.+++...-. . ..+...|.+.......+.....++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999998632110 0 0001112222222223333347899
Q ss_pred EEeCCCcccccccccccccccCEEEEEEECCCh
Q 032789 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ 95 (133)
Q Consensus 63 l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~ 95 (133)
+||+||+.++.......+..+|++|+|+|+++.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 999999987766556667889999999999984
No 225
>COG1159 Era GTPase [General function prediction only]
Probab=99.28 E-value=1.6e-11 Score=87.15 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=59.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccc--------cccccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SLAPMY 79 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~--------~~~~~~ 79 (133)
.+.--|+++|.||||||||+|++.+.+.+-............+.+... ...++.+.||||--+-+ ......
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 456679999999999999999999987764222222121222222222 35799999999943222 223445
Q ss_pred ccccCEEEEEEECCCh
Q 032789 80 YRGAAAAIIVYDITNQ 95 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~ 95 (133)
+.++|++++|+|.+++
T Consensus 83 l~dvDlilfvvd~~~~ 98 (298)
T COG1159 83 LKDVDLILFVVDADEG 98 (298)
T ss_pred hccCcEEEEEEecccc
Confidence 7889999999999874
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.28 E-value=2.4e-11 Score=90.83 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=74.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhC-----C--CC-----C--cccCceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG-----Q--FI-----E--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~-----~--~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~ 71 (133)
+....++|+++|..++|||||+++|+.. + +. . ..+...|.+.......+......+.+||+||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 4567889999999999999999999732 0 00 0 1111233333444444544457889999999998
Q ss_pred ccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCC-Cccccccccccc
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGI-HIQSLLQRFFSC 125 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~~~ 125 (133)
|..........+|++++|+|+++....+. .+.+..+..... ...++++++|..
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQVGVPYIVVFLNKCDMV 141 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEEEecccC
Confidence 86555555677899999999987432222 233333443322 222346676653
No 227
>PRK12735 elongation factor Tu; Reviewed
Probab=99.27 E-value=3.7e-11 Score=89.89 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=75.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhC-------CC---C----CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKG-------QF---I----EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~-------~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~ 72 (133)
....++|.++|..++|||||+++++.. ++ . .+.+...|.+.......+......+.++|+||+++|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 446789999999999999999999862 10 0 011122333333333344434467899999999888
Q ss_pred cccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCC-ccccccccccc
Q 032789 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIH-IQSLLQRFFSC 125 (133)
Q Consensus 73 ~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~l~~~~~~ 125 (133)
.......+..+|++++|+|+.+...- +..+.+..+...... +.+++.++|.+
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHHcCCCeEEEEEEecCCc
Confidence 66556667889999999999874322 233444444443322 22346777765
No 228
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.27 E-value=3.8e-11 Score=89.72 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=66.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~--------~~~ 79 (133)
.-+|++++|.||||||||+|.+++.+-. -+..+....+.-...+.+++ +++.+.||.|..+..... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4679999999999999999999986443 44556666666666666777 999999999976544332 345
Q ss_pred ccccCEEEEEEECCCh
Q 032789 80 YRGAAAAIIVYDITNQ 95 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~ 95 (133)
++++|.+++|+|.+.+
T Consensus 294 i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 294 IEEADLVLFVLDASQP 309 (454)
T ss_pred HHhCCEEEEEEeCCCC
Confidence 8889999999999986
No 229
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.26 E-value=2.6e-11 Score=82.48 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=53.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceee--eEEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA--AFFSQTLAVNDATVKFEIWDTAGQERYHS-----------LAP 77 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-----------~~~ 77 (133)
.+|+++|.+||||||++|.+++.+.........+. ..........+ ..+.++||||-.+... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987654322111111 11222222333 6899999999544321 111
Q ss_pred ccccccCEEEEEEECCC
Q 032789 78 MYYRGAAAAIIVYDITN 94 (133)
Q Consensus 78 ~~~~~~~~iv~v~d~~~ 94 (133)
...++.|++++|.++.+
T Consensus 79 ~~~~g~~~illVi~~~~ 95 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR 95 (196)
T ss_pred hcCCCCEEEEEEEECCC
Confidence 22467899999999886
No 230
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.26 E-value=2.3e-11 Score=86.77 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc------c------c
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER------Y------H 73 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~------~------~ 73 (133)
.+++...|+++|.+|||||||.|++++.+.++....... +.....-.+....+++.++|+||.-. + .
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~T-Tr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHT-TRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccc-eeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 356888999999999999999999999988764433332 22333333344568999999999321 1 1
Q ss_pred ccccccccccCEEEEEEECCC
Q 032789 74 SLAPMYYRGAAAAIIVYDITN 94 (133)
Q Consensus 74 ~~~~~~~~~~~~iv~v~d~~~ 94 (133)
+.....+..+|.+++++|+++
T Consensus 147 q~~~~a~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASA 167 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccC
Confidence 123445777999999999996
No 231
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.26 E-value=1.3e-11 Score=98.28 Aligned_cols=118 Identities=18% Similarity=0.167 Sum_probs=74.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhC---------------CCCCc-c--cCceeeeEEEEEEEECCeEEEEEEEeCC
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG---------------QFIEF-Q--ESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~---------------~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 67 (133)
+.....+|+++|..++|||||+++++.. .+.+. . ..++...........+...+.+.+||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 3445679999999999999999999752 11110 0 0122111122222345556899999999
Q ss_pred CcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 68 g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|+.+|.......++.+|++|+|+|..+....+...-|........|. .+++++.|.
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~ 150 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKP-VLFINKVDR 150 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCE-EEEEEChhc
Confidence 99998877788899999999999998753333333343322222232 355555554
No 232
>PLN03126 Elongation factor Tu; Provisional
Probab=99.25 E-value=4.6e-11 Score=91.14 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=77.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCC------CCC--------cccCceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ------FIE--------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~ 71 (133)
.+...++|+++|..++|||||+++|+... ... ..+...|.+.......+......+.++|+||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 34567899999999999999999998521 100 0112223333333333333346889999999999
Q ss_pred ccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccccc
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
|.......+..+|++++|+|+.+...-+ .++++..+.... +...+++.+.|.+
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQVGVPNMVVFLNKQDQV 210 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcCCCeEEEEEeccccc
Confidence 8766666778899999999988754333 344555554443 3344567777764
No 233
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.25 E-value=1.9e-11 Score=91.01 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=64.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------SLAPMYY 80 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~---------~~~~~~~ 80 (133)
..|+++|.||||||||.||+.+++.. -+..+....+..+....+.+ .++.+.||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 67999999999999999999987665 34446666666666666666 569999999966432 2345568
Q ss_pred cccCEEEEEEECCCh
Q 032789 81 RGAAAAIIVYDITNQ 95 (133)
Q Consensus 81 ~~~~~iv~v~d~~~~ 95 (133)
.++|++++|+|....
T Consensus 82 ~eADvilfvVD~~~G 96 (444)
T COG1160 82 EEADVILFVVDGREG 96 (444)
T ss_pred HhCCEEEEEEeCCCC
Confidence 889999999998763
No 234
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.24 E-value=7.6e-11 Score=93.63 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=75.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCC------------------cccCceeeeEEEEEEEECCeEEEEEEEeCC
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIE------------------FQESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 67 (133)
+..+..+|.++|..++|||||+++++...-.. +....+..+.....+..++ ..+.+||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTP 83 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTP 83 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECC
Confidence 34456699999999999999999997421110 0011222222333344444 789999999
Q ss_pred CcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 68 g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|+.++.......++.+|++++|+|.++....+...-| ..+.+......++++++|.
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~~~p~ivviNK~D~ 139 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRYEVPRIAFVNKMDK 139 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHcCCCEEEEEECCCC
Confidence 9998877778889999999999999986555544333 3444443333344555553
No 235
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.24 E-value=8.1e-11 Score=84.83 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=53.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCc-ccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccc---ccc--
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP---MYY-- 80 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~---~~~-- 80 (133)
....++|+++|.+||||||++|++++.+.... .....+..........+ +.++.++||||..+...... ..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 45688999999999999999999998764221 11111111111122223 47899999999654321111 111
Q ss_pred ----cccCEEEEEEECCC
Q 032789 81 ----RGAAAAIIVYDITN 94 (133)
Q Consensus 81 ----~~~~~iv~v~d~~~ 94 (133)
...|++++|..++.
T Consensus 113 ~l~~~g~DvVLyV~rLD~ 130 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDA 130 (313)
T ss_pred HhhcCCCCEEEEEeccCc
Confidence 25899999976653
No 236
>PRK12736 elongation factor Tu; Reviewed
Probab=99.21 E-value=7.9e-11 Score=88.10 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=75.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCC--------------CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~ 72 (133)
....++|+++|..++|||||+.++++.... .+.+...|.+.......+......+.++|+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 456789999999999999999999852110 011112333343444444444568899999999988
Q ss_pred cccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCC-Cccccccccccc
Q 032789 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGI-HIQSLLQRFFSC 125 (133)
Q Consensus 73 ~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~~~ 125 (133)
.......+..+|++++|+|.++...-+ .++.+..+..... ...+++.++|..
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHcCCCEEEEEEEecCCc
Confidence 665555677899999999998643222 2334444444332 233457777654
No 237
>CHL00071 tufA elongation factor Tu
Probab=99.21 E-value=1.5e-10 Score=87.03 Aligned_cols=119 Identities=15% Similarity=0.158 Sum_probs=76.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------cccCceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIE--------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~ 71 (133)
.+...++|+++|..++|||||+++++...-.. ..+...|.+.......+......+.+.|+||+.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 45567899999999999999999998641100 0111223333333333433446788999999988
Q ss_pred ccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccccc
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
|.......+..+|++++|+|+.+... .+.++.+..+.... |...+++.+.|.+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQVGVPNIVVFLNKEDQV 141 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCEEEEEEEccCCC
Confidence 76666667888999999999886432 23334444444333 2244567777764
No 238
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.20 E-value=1.6e-10 Score=81.53 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=53.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccC-ceeeeEEEEEEEECCeEEEEEEEeCCCccccc--c-c-------
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--S-L------- 75 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~--~-~------- 75 (133)
....++|+++|.+||||||++|.+++......... .............+ +.++.+|||||-.+.. . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--GFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 45678999999999999999999998765332111 11111111122223 3689999999965431 1 1
Q ss_pred cccccc--ccCEEEEEEECCC
Q 032789 76 APMYYR--GAAAAIIVYDITN 94 (133)
Q Consensus 76 ~~~~~~--~~~~iv~v~d~~~ 94 (133)
...++. ..|++++|..++.
T Consensus 106 I~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCC
Confidence 111222 4788888876664
No 239
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.20 E-value=4.1e-11 Score=89.93 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=70.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC---CCcccCceeeeEEEEE--------------EEE----CC------eEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF---IEFQESTIGAAFFSQT--------------LAV----ND------ATVK 60 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~---~~~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 60 (133)
+..++|+++|..++|||||++++.+... .++............. +.. +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999965321 1111111111111000 000 01 1367
Q ss_pred EEEEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHh-CCCccccccccccc
Q 032789 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GIHIQSLLQRFFSC 125 (133)
Q Consensus 61 ~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~l~~~~~~ 125 (133)
+.+||+||+++|..........+|++++|+|+++.....+..+.+..+... .++..+++.++|.+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 899999999998777677777889999999999643112222333333332 23445556666654
No 240
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.19 E-value=1.9e-11 Score=85.99 Aligned_cols=104 Identities=20% Similarity=0.396 Sum_probs=68.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEE-EEEECCeEEEEEEEeCCCccc-------ccccccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ-TLAVNDATVKFEIWDTAGQER-------YHSLAPM 78 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~d~~g~~~-------~~~~~~~ 78 (133)
....++|+++|.+||||||+||.++.+...+-..-..+.+.... ...++. -.+.+||+||-++ +.+....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 44678999999999999999999997654442222222222111 112222 5789999999554 5666778
Q ss_pred cccccCEEEEEEECCChhhHHHHHHHHHHHHHhCC
Q 032789 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGI 113 (133)
Q Consensus 79 ~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~ 113 (133)
.+...|.++++.+..|+.- .--.+++..+...+.
T Consensus 114 ~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~ 147 (296)
T COG3596 114 YLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILGL 147 (296)
T ss_pred HhhhccEEEEeccCCCccc-cCCHHHHHHHHHhcc
Confidence 8999999999999988642 222244444444443
No 241
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.19 E-value=1.9e-10 Score=83.70 Aligned_cols=81 Identities=23% Similarity=0.284 Sum_probs=54.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC------CcccCceeeeEEEEE---------------EEECC-eEEEEEEEeCCCc-
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFI------EFQESTIGAAFFSQT---------------LAVND-ATVKFEIWDTAGQ- 69 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~------~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~l~d~~g~- 69 (133)
|.++|.++||||||++++.+.... ....++.|..+.... ...++ ..+++++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987643 122344444332211 00122 3468999999997
Q ss_pred ---ccccccccc---cccccCEEEEEEECC
Q 032789 70 ---ERYHSLAPM---YYRGAAAAIIVYDIT 93 (133)
Q Consensus 70 ---~~~~~~~~~---~~~~~~~iv~v~d~~ 93 (133)
++....... .++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334443334 389999999999997
No 242
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.18 E-value=1.8e-10 Score=90.27 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=71.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC---CCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG---QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
-|.++|..++|||||++++.+. .+.++.......+.....+... ....+.+||+||+++|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999999863 3333443444444433333222 23468999999999987665666889999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHHhC-CCccccccccccc
Q 032789 89 VYDITNQ---ASFERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 89 v~d~~~~---~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
|+|+++. .+.+.+ ..+.... +...++++++|..
T Consensus 81 VVda~eg~~~qT~ehl----~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred EEECCCCCcHHHHHHH----HHHHHcCCCeEEEEEECCccC
Confidence 9999873 333332 2333222 3345677777764
No 243
>PRK00049 elongation factor Tu; Reviewed
Probab=99.17 E-value=2.6e-10 Score=85.34 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=77.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCC--------------CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~ 71 (133)
+....++|+++|..++|||||+++++..... ...+...|.+.......+......+.+.|+||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3456789999999999999999999863110 00111233333333444443456789999999988
Q ss_pred ccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCc-cccccccccc
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHI-QSLLQRFFSC 125 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~l~~~~~~ 125 (133)
|.......+..+|++++|+|.++... .+.++.+..+....... .+++.+.|..
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHcCCCEEEEEEeecCCc
Confidence 86666667889999999999987532 23344455555433222 2346777654
No 244
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.17 E-value=2.4e-10 Score=71.61 Aligned_cols=80 Identities=25% Similarity=0.334 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccc-CceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
+|++++|+.|||||+|+.++....+...+. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997776654332 2222 223334567778899999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-CCccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQG-IHIQSLL 119 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l 119 (133)
|+.+++++++.+ |.+.+.... .+.|.++
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~ 82 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILV 82 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEE
Confidence 999999999877 888776543 3444433
No 245
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.15 E-value=1.3e-10 Score=87.31 Aligned_cols=90 Identities=17% Similarity=0.119 Sum_probs=57.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCC---CCCcccCceeeeEEE--EEEE----------E------C------CeE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFS--QTLA----------V------N------DAT 58 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~---~~~~~~~~~~~~~~~--~~~~----------~------~------~~~ 58 (133)
.+...++|+++|..++|||||+.++.+.. ...+........... .... + + ...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 34567899999999999999999996531 111111222211111 0000 0 0 012
Q ss_pred EEEEEEeCCCcccccccccccccccCEEEEEEECCCh
Q 032789 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ 95 (133)
Q Consensus 59 ~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~ 95 (133)
..+.+||+||+++|..........+|++++|+|++++
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~ 121 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEP 121 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 5789999999998865545555667999999999964
No 246
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.13 E-value=1.7e-10 Score=86.59 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=68.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-Cc------------------------------ccCceeeeEEEEEEEECCeEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EF------------------------------QESTIGAAFFSQTLAVNDATV 59 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 59 (133)
++|+++|..++|||||+.+++...-. .. .+...|.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999742111 00 001112222222222323346
Q ss_pred EEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHH-hCCCccccccccccc
Q 032789 60 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-QGIHIQSLLQRFFSC 125 (133)
Q Consensus 60 ~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~l~~~~~~ 125 (133)
++.++|+||+++|.......+..+|++++|+|++....-+..+-|. .+.. ..+...+++++.|.+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHcCCCcEEEEEEecccc
Confidence 8899999999988665556788999999999988653322222222 1222 234445566666654
No 247
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.12 E-value=7.5e-10 Score=79.69 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=70.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc--cccccccc------
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLAPMY------ 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--~~~~~~~~------ 79 (133)
....|++.|.||||||||++.+.+.+.. .+|+.|. -..+...+.. ...++|++||||.-+ ....+.-.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT-K~i~vGhfe~--~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT-KGIHVGHFER--GYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc-cceeEeeeec--CCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 5678999999999999999999986544 4454333 2233333333 336999999999432 22222111
Q ss_pred ccc-cCEEEEEEECCCh--hhHHHHHHHHHHHHHhCCCcccccc
Q 032789 80 YRG-AAAAIIVYDITNQ--ASFERAKKWVQELQAQGIHIQSLLQ 120 (133)
Q Consensus 80 ~~~-~~~iv~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~l~ 120 (133)
++. .++|++++|.+.. -+.++-...+.++..... .|++++
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V 286 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVV 286 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEE
Confidence 222 5689999999864 556666688888877665 444443
No 248
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.12 E-value=8.4e-10 Score=82.53 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-ccc-----CceeeeEEEEEE---------------EEC-CeEEEEEEEeCCC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQE-----STIGAAFFSQTL---------------AVN-DATVKFEIWDTAG 68 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~-~~~-----~~~~~~~~~~~~---------------~~~-~~~~~~~l~d~~g 68 (133)
+||.++|.++||||||++++.+..... .++ ++.|.......+ ..+ ....++++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999876542 221 223322211100 011 2236799999999
Q ss_pred c----cccccccccc---ccccCEEEEEEECC
Q 032789 69 Q----ERYHSLAPMY---YRGAAAAIIVYDIT 93 (133)
Q Consensus 69 ~----~~~~~~~~~~---~~~~~~iv~v~d~~ 93 (133)
. ++.......+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333333344 88999999999997
No 249
>PLN03127 Elongation factor Tu; Provisional
Probab=99.11 E-value=5.5e-10 Score=84.72 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=73.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhC------CCC------C--cccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKG------QFI------E--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~------~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~ 72 (133)
....++|+++|..++|||||++++.+. ... . +.+...|.+.......+.....++.+.|+||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 345789999999999999999999621 100 0 01112233333334444444568899999999887
Q ss_pred cccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCC-ccccccccccc
Q 032789 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIH-IQSLLQRFFSC 125 (133)
Q Consensus 73 ~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~l~~~~~~ 125 (133)
..........+|++++|+|.++...- +.++.+..+...... ..++++++|..
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence 65555556779999999998765322 233444444443322 33456777654
No 250
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.10 E-value=4.3e-10 Score=85.91 Aligned_cols=89 Identities=22% Similarity=0.211 Sum_probs=59.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCC-Cc--------------c----------------cCceeeeEEEEEEEEC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EF--------------Q----------------ESTIGAAFFSQTLAVN 55 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~--------------~----------------~~~~~~~~~~~~~~~~ 55 (133)
....++|+++|..++|||||+.+++...-. .. . +...|.+.........
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 356789999999999999999999853211 00 0 0011222222222233
Q ss_pred CeEEEEEEEeCCCcccccccccccccccCEEEEEEECCCh
Q 032789 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ 95 (133)
Q Consensus 56 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~ 95 (133)
.....+.++|+||+++|.......+..+|++++|+|+++.
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 3346889999999998865555557999999999999764
No 251
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=8.3e-11 Score=80.99 Aligned_cols=109 Identities=21% Similarity=0.353 Sum_probs=71.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceee--eEEEEEEEECCeEEEEEEEeCCCcccc-----cccccccccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA--AFFSQTLAVNDATVKFEIWDTAGQERY-----HSLAPMYYRG 82 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~d~~g~~~~-----~~~~~~~~~~ 82 (133)
+-||+++|.+|+||||+-..+..+. ........|. ++......+- ..+.+.+||++|++.+ .......++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny-~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANY-IARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhh-hhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 4589999999999999765544321 1111122222 2222222221 1378999999999854 3345677899
Q ss_pred cCEEEEEEECCChhhHHH---HHHHHHHHHHhCCCcccccc
Q 032789 83 AAAAIIVYDITNQASFER---AKKWVQELQAQGIHIQSLLQ 120 (133)
Q Consensus 83 ~~~iv~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~~l~ 120 (133)
.+++++|||+..++--.. -+..++.+.++.|++.++..
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l 122 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCL 122 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 999999999998754444 44667888888888877654
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.10 E-value=2.9e-10 Score=89.60 Aligned_cols=119 Identities=19% Similarity=0.164 Sum_probs=71.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCC-Ccc------------------------------cCceeeeEEEEEEEE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQ------------------------------ESTIGAAFFSQTLAV 54 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~------------------------------~~~~~~~~~~~~~~~ 54 (133)
.....++|+++|..++|||||+++++...-. .+. +...|.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 3456789999999999999999999863211 100 000111122222222
Q ss_pred CCeEEEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccccc
Q 032789 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 55 ~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
.....++.++|+||+++|.......+..+|++++|+|+++...-+.. +.+..+.... +...++++++|.+
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~~~~~~~~~~~iivvvNK~D~~ 170 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHSFIASLLGIRHVVLAVNKMDLV 170 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHHHHHHHhCCCeEEEEEEecccc
Confidence 22346788999999988765445568899999999999764322211 2222222222 4455567777765
No 253
>PRK12739 elongation factor G; Reviewed
Probab=99.09 E-value=7.1e-10 Score=88.21 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=75.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCC------------------CcccCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI------------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
..+..+|.++|..++|||||+++++...-. .+....+..+.....+.+++ ..+.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 345678999999999999999999752110 00122233333333444444 7899999999
Q ss_pred cccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+.++.......++.+|++++|+|..+...-+.. ..+..+.+......++++++|..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKYGVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHcCCCEEEEEECCCCC
Confidence 988877778889999999999999876444333 33334444333333555555543
No 254
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.08 E-value=1.3e-09 Score=75.87 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=68.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCc-----------------------eeeeEEE---------------EEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQEST-----------------------IGAAFFS---------------QTLA 53 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~-----------------------~~~~~~~---------------~~~~ 53 (133)
||+++|+.++|||||+.++..+.+.+..... .|.+... ..+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~- 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC- 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee-
Confidence 6899999999999999999976554311100 0111000 011
Q ss_pred ECCeEEEEEEEeCCCcccccccccccc--cccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 54 VNDATVKFEIWDTAGQERYHSLAPMYY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 54 ~~~~~~~~~l~d~~g~~~~~~~~~~~~--~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
......+.+.|+||+++|.......+ ..+|++++|+|++.... ....+++..+.+......+++.++|.
T Consensus 80 -~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~~ip~ivvvNK~D~ 150 (224)
T cd04165 80 -EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALALNIPVFVVVTKIDL 150 (224)
T ss_pred -eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCEEEEEECccc
Confidence 11235789999999998855433333 36899999999876543 33345555555554445566666664
No 255
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.08 E-value=2e-09 Score=80.44 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=79.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc----------ccc-cc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHS-LA 76 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----------~~~-~~ 76 (133)
..+||+++|.||||||||+|+++++.-. ....+....+.....+..++ .++.+.||.|..+ |+. -.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999986433 33334444444444555555 7889999999533 221 12
Q ss_pred cccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 77 ~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
...+..+|++++|.|.+.+-+-+. ......+.+......+++.+++.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~~g~~~vIvvNKWDl 301 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQD-LRIAGLIEEAGRGIVIVVNKWDL 301 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHHcCCCeEEEEEcccc
Confidence 334677999999999988765443 35566666667777888888775
No 256
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.08 E-value=9.2e-10 Score=83.55 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=76.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCC--C-------------------------C--cccCceeeeEEEEEEEECC
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF--I-------------------------E--FQESTIGAAFFSQTLAVND 56 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~--~-------------------------~--~~~~~~~~~~~~~~~~~~~ 56 (133)
.+...++|+++|..++|||||+.+++...- . . ..+...|.+.......+..
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 455678999999999999999999875210 0 0 0001122333333333344
Q ss_pred eEEEEEEEeCCCcccccccccccccccCEEEEEEECCChh---hH---HHHHHHHHHHHHhC-CCccccccccc
Q 032789 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SF---ERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 57 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~---s~---~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
....+.++|+||+.+|.......+..+|++++|+|.++.. .| .+.++-+..+.... +...+++++.|
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 4578999999999998777777789999999999998643 11 23334344444433 45566777777
No 257
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.06 E-value=1.3e-09 Score=82.74 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=77.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------C--cccCceeeeEEEEEEEECCe
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI---------------------------E--FQESTIGAAFFSQTLAVNDA 57 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~ 57 (133)
+...++|+++|..++|||||+.+++...-. . ..+...|.+.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 456789999999999999999988742110 0 00112233333333334445
Q ss_pred EEEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHH-------HHHHHHHHHHHh-CCCccccccccccc
Q 032789 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE-------RAKKWVQELQAQ-GIHIQSLLQRFFSC 125 (133)
Q Consensus 58 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~-------~~~~~~~~i~~~-~~~~~~~l~~~~~~ 125 (133)
...+.+.|+|||++|.......+..+|+.|+|+|+++ .+|+ +.++.+...... .+...+++++.|.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 5789999999999998877888999999999999987 3332 334444333332 23445566777754
No 258
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.5e-10 Score=77.59 Aligned_cols=97 Identities=15% Similarity=0.245 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc---ccCEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR---GAAAAI 87 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~---~~~~iv 87 (133)
-.|+++|+.+||||+|.-++..+.+..... +..+....+....-..++.|.|||++.+.....+++ .+.++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-----Siepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-----SIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee-----eeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 479999999999999999999985544332 122222222111234899999999988776666666 789999
Q ss_pred EEEECCC-hhhHHHHHHHHHHHHHhC
Q 032789 88 IVYDITN-QASFERAKKWVQELQAQG 112 (133)
Q Consensus 88 ~v~d~~~-~~s~~~~~~~~~~i~~~~ 112 (133)
+|+|..- +....++-+++-.+.-.+
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~ 139 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDS 139 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhh
Confidence 9999773 344555556555554443
No 259
>PRK00007 elongation factor G; Reviewed
Probab=99.05 E-value=7.9e-10 Score=87.95 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=74.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCC--C----------------cccCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E----------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
..+..+|.++|..++|||||+++++...-. . +....+..+.....+.+.+ ..+.+.||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 345669999999999999999999742110 0 0112222222333344444 7899999999
Q ss_pred cccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+.+|.......+..+|++|+|+|.......+...-|. .+.+......++++++|..
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKYKVPRIAFVNKMDRT 140 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHcCCCEEEEEECCCCC
Confidence 9887666677788999999999988765455444343 3444333334555665543
No 260
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.05 E-value=8.8e-10 Score=76.03 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=49.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccC--ceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQES--TIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-----------AP 77 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~-----------~~ 77 (133)
++|+++|.+|+||||++|.+++......... .............++ ..+.++||||-.+.... ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999998766543311 111122233334555 78899999994322111 11
Q ss_pred ccccccCEEEEEEECC
Q 032789 78 MYYRGAAAAIIVYDIT 93 (133)
Q Consensus 78 ~~~~~~~~iv~v~d~~ 93 (133)
......|++++|+...
T Consensus 79 ~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG 94 (212)
T ss_dssp HTTT-ESEEEEEEETT
T ss_pred hccCCCeEEEEEEecC
Confidence 2245689999999988
No 261
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.04 E-value=3.2e-09 Score=76.43 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=69.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc---c----cccccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---Y----HSLAPMYY 80 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~---~----~~~~~~~~ 80 (133)
--..++++|.|+||||||++.+.+.+.. .+|+.|. .+..+-.+.+++ .++++.|+||.-. . ....-...
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTT-l~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTT-LEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCcee-cccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3568999999999999999999986554 3454444 333455566666 8999999998421 1 12345568
Q ss_pred cccCEEEEEEECCChhh-HHHHHHHHHHH
Q 032789 81 RGAAAAIIVYDITNQAS-FERAKKWVQEL 108 (133)
Q Consensus 81 ~~~~~iv~v~d~~~~~s-~~~~~~~~~~i 108 (133)
+.||.+++|.|+....+ .+.+.+.++..
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~ 167 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDV 167 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhc
Confidence 99999999999997655 55555555544
No 262
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.02 E-value=5.6e-09 Score=81.28 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=65.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-------ccccc-
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-------APMYY- 80 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~-------~~~~~- 80 (133)
+..+|+++|+||||||||.|++.+.+..-.+.+....+...-.....+ .++++.|+||-...... .+...
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 345699999999999999999999776666677777776666666665 56999999996544332 22233
Q ss_pred cccCEEEEEEECCChhh
Q 032789 81 RGAAAAIIVYDITNQAS 97 (133)
Q Consensus 81 ~~~~~iv~v~d~~~~~s 97 (133)
.+.|++|-|.|.++.+.
T Consensus 80 ~~~D~ivnVvDAtnLeR 96 (653)
T COG0370 80 GKPDLIVNVVDATNLER 96 (653)
T ss_pred CCCCEEEEEcccchHHH
Confidence 34699999999998543
No 263
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.02 E-value=4.6e-10 Score=72.56 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=44.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcc----cccccccccccccCEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----RYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~----~~~~~~~~~~~~~~~iv 87 (133)
||+++|+.+||||||+++|.+... .+..+....+ .+ ..+|+||.- .+....-....++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999988654 2333333322 11 347788732 12222223344677777
Q ss_pred EEEECCCh
Q 032789 88 IVYDITNQ 95 (133)
Q Consensus 88 ~v~d~~~~ 95 (133)
++.|.+++
T Consensus 69 ll~dat~~ 76 (143)
T PF10662_consen 69 LLQDATEP 76 (143)
T ss_pred EEecCCCC
Confidence 77777764
No 264
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.00 E-value=5.4e-09 Score=79.56 Aligned_cols=104 Identities=18% Similarity=0.357 Sum_probs=77.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC--CeEEEEEEEeCCCcccccccccccccccC-
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--DATVKFEIWDTAGQERYHSLAPMYYRGAA- 84 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~d~~g~~~~~~~~~~~~~~~~- 84 (133)
...-.|+|+|+.++|||||+.+|.+.. ++.++.+.+|.+-.+.-. +...++.+|.+.|...+..+.+..++...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345689999999999999999987643 344566666655544432 33457899999987777777777776532
Q ss_pred ---EEEEEEECCChhhH-HHHHHHHHHHHHhCCC
Q 032789 85 ---AAIIVYDITNQASF-ERAKKWVQELQAQGIH 114 (133)
Q Consensus 85 ---~iv~v~d~~~~~s~-~~~~~~~~~i~~~~~~ 114 (133)
.+|+|.|.+.|..+ ++++.|+..++++...
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~ 133 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEK 133 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999774 5688999988887543
No 265
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.99 E-value=7.9e-09 Score=74.13 Aligned_cols=61 Identities=21% Similarity=0.384 Sum_probs=41.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcc----------cCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----------ESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
...++|+++|.+|+|||||++.|++....... ..+.........+.-++..+.+.++||||
T Consensus 2 g~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 2 GFNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 35789999999999999999999986544332 12222333333444567889999999999
No 266
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=3.3e-09 Score=79.83 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=67.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc-ccc--------cccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHS--------LAPM 78 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~--------~~~~ 78 (133)
+..++|+++|.||||||||+|.+.+.+-+- -.+..|.+....+..++-.+.++.+.||.|..+ ... ..+.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsI-VSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSI-VSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceE-eCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 346899999999999999999999875542 223344444444444444459999999999655 211 1234
Q ss_pred cccccCEEEEEEEC--CChhhHHHHHHHHHHH
Q 032789 79 YYRGAAAAIIVYDI--TNQASFERAKKWVQEL 108 (133)
Q Consensus 79 ~~~~~~~iv~v~d~--~~~~s~~~~~~~~~~i 108 (133)
.+..+|++++|+|. ++-++-..+.+.++..
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~ 376 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETE 376 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHh
Confidence 47789999999998 4444444444444444
No 267
>PTZ00416 elongation factor 2; Provisional
Probab=98.92 E-value=4.3e-09 Score=85.25 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=75.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC--C------------cccCceeeeEE--EEEEEEC--------CeEEEEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--E------------FQESTIGAAFF--SQTLAVN--------DATVKFEI 63 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~--~------------~~~~~~~~~~~--~~~~~~~--------~~~~~~~l 63 (133)
....+|+++|..++|||||+++++...-. . ..+...|.+.. ...+.+. +....+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 34559999999999999999999863211 0 00011111111 1122222 22567899
Q ss_pred EeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 64 ~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
.||||+.+|.......++.+|++|+|+|..+.-..+...-| ..+.+......++++++|.+
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHcCCCEEEEEEChhhh
Confidence 99999999877778889999999999999886544444444 44444444445666666665
No 268
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.92 E-value=3.2e-09 Score=86.09 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=78.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCC--C---------cc---cCceeeeEE--EEEEEE--------------C
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E---------FQ---ESTIGAAFF--SQTLAV--------------N 55 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~--~---------~~---~~~~~~~~~--~~~~~~--------------~ 55 (133)
+..+..+|+++|..++|||||+.+++...-. . .+ +...|.++. ...+.+ .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3445669999999999999999999854311 0 00 011111221 111222 1
Q ss_pred CeEEEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 56 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+..+.+.++|+||+.+|.......++.+|+.|+|+|+.+.-..+...-|.....+ .....+++++.|.+
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-RIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-CCCEEEEEECCccc
Confidence 2357889999999999988778889999999999999987655555555554443 33445666666665
No 269
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.90 E-value=4.7e-09 Score=67.88 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=39.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 69 (133)
+++++|.+||||||+++++.+..... .....+.+.....+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876542 223334444445555544 5799999994
No 270
>PRK12740 elongation factor G; Reviewed
Probab=98.90 E-value=3.9e-09 Score=83.78 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=68.1
Q ss_pred EcCCCCCHHHHHHHHHhCCCCC------------------cccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q 032789 16 LGDVGAGKSSLVLRFVKGQFIE------------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP 77 (133)
Q Consensus 16 ~G~~~vGKTsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~ 77 (133)
+|..++|||||+++++...-.. +....+........+...+ +.+.+||+||+.++.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 5899999999999996432110 0011222222233344444 8899999999988777777
Q ss_pred ccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 78 ~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
..++.+|++++|+|.++....+...-|. .+........+++++++.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~~~~p~iiv~NK~D~ 124 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEKYGVPRIIFVNKMDR 124 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHHcCCCEEEEEECCCC
Confidence 7899999999999999876665554443 344433333445555554
No 271
>PTZ00258 GTP-binding protein; Provisional
Probab=98.90 E-value=1.9e-08 Score=74.91 Aligned_cols=87 Identities=18% Similarity=0.069 Sum_probs=55.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCe---------------EEEEEEEeCCCccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQER 71 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~d~~g~~~ 71 (133)
.....+|.++|.+|||||||++.+.+.+......+..+.+.....+...+. ..++.+.|+||-.+
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 456789999999999999999999876543322233333222323332211 24589999999542
Q ss_pred cc----c---cccccccccCEEEEEEECC
Q 032789 72 YH----S---LAPMYYRGAAAAIIVYDIT 93 (133)
Q Consensus 72 ~~----~---~~~~~~~~~~~iv~v~d~~ 93 (133)
-. . ..-..++++|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11 1 1122467899999999974
No 272
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.88 E-value=2.4e-08 Score=78.23 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=65.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeE-EEEEEEECCeEEEEEEEeCCCcccccc-------c---c
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF-FSQTLAVNDATVKFEIWDTAGQERYHS-------L---A 76 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~d~~g~~~~~~-------~---~ 76 (133)
...++|+++|.+||||||++|.+++.+.........+.+. .......++ ..+.++||||-..... . .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 3567999999999999999999998764332211111111 111122333 6899999999654311 0 1
Q ss_pred ccccc--ccCEEEEEEECCChhhHHHHHHHHHHHHHhC-----CCccccccccc
Q 032789 77 PMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQG-----IHIQSLLQRFF 123 (133)
Q Consensus 77 ~~~~~--~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~~l~~~~ 123 (133)
..++. ..|++|+|..++......+-..++..+.+.+ .+..+++...+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD 247 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAA 247 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCc
Confidence 11223 4799999998864433223334555554432 34444444443
No 273
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.86 E-value=1e-08 Score=67.75 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=41.5
Q ss_pred EEEEEeCCCccc----ccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCc
Q 032789 60 KFEIWDTAGQER----YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHI 115 (133)
Q Consensus 60 ~~~l~d~~g~~~----~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 115 (133)
.+.++|+||-.. .......+++.+|++++|.+.+...+-.+...|.+.........
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRT 161 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSE
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeE
Confidence 578999999643 22456677899999999999998766666777777776655553
No 274
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.86 E-value=1.7e-08 Score=74.53 Aligned_cols=83 Identities=20% Similarity=0.071 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECC---------------eEEEEEEEeCCCcccccc-
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND---------------ATVKFEIWDTAGQERYHS- 74 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~d~~g~~~~~~- 74 (133)
++|.++|.+|||||||++++.+.+......+..+.+.....+.+.+ ...++.+.|+||-.+-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999998763322212222222222222222 113589999999543111
Q ss_pred ------cccccccccCEEEEEEECC
Q 032789 75 ------LAPMYYRGAAAAIIVYDIT 93 (133)
Q Consensus 75 ------~~~~~~~~~~~iv~v~d~~ 93 (133)
..-..++++|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122367899999999984
No 275
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.85 E-value=2e-08 Score=72.67 Aligned_cols=105 Identities=18% Similarity=0.328 Sum_probs=79.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEE--CCeEEEEEEEeCCCccccccccccccccc--
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV--NDATVKFEIWDTAGQERYHSLAPMYYRGA-- 83 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~d~~g~~~~~~~~~~~~~~~-- 83 (133)
+..-+|+++|+.++|||||+.++.+.. ...+..|.+|.+-.+.- .+...++.+|-+.|...+..+.+..+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 345589999999999999999998765 34456666665554433 34567899999999887777776666654
Q ss_pred -C-EEEEEEECCChhh-HHHHHHHHHHHHHhCCCc
Q 032789 84 -A-AAIIVYDITNQAS-FERAKKWVQELQAQGIHI 115 (133)
Q Consensus 84 -~-~iv~v~d~~~~~s-~~~~~~~~~~i~~~~~~~ 115 (133)
+ .+|++.|+++|.. ++.++.|...+++|....
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl 161 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKL 161 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3 6778999999955 666899999998876433
No 276
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.82 E-value=5.9e-09 Score=83.48 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=73.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCC-Cc----------cc---CceeeeEEE--EEE--EECCeEEEEEEEeCCC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EF----------QE---STIGAAFFS--QTL--AVNDATVKFEIWDTAG 68 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~----------~~---~~~~~~~~~--~~~--~~~~~~~~~~l~d~~g 68 (133)
..+..+|+++|..++|||||+.+++...-. .. +. ...+.+... ..+ ...+....+.++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 345568999999999999999999853211 00 00 001111111 111 2233467899999999
Q ss_pred cccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+.+|.......++.+|++|+|+|.......+...-|........| ..+++++.|.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~-~iv~iNK~D~ 151 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK-PVLFINKVDR 151 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC-eEEEEECchh
Confidence 999877778889999999999998876444444445443333333 2344455543
No 277
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.82 E-value=2.6e-08 Score=71.14 Aligned_cols=81 Identities=20% Similarity=0.073 Sum_probs=50.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCe---------------EEEEEEEeCCCccccc----
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERYH---- 73 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~d~~g~~~~~---- 73 (133)
|.++|.+|||||||++++.+.+......+..+.+.....+.+.+. ...+.++|+||-.+-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 578999999999999999987653322232222222222333221 2358999999954211
Q ss_pred cc---ccccccccCEEEEEEECC
Q 032789 74 SL---APMYYRGAAAAIIVYDIT 93 (133)
Q Consensus 74 ~~---~~~~~~~~~~iv~v~d~~ 93 (133)
.. .-..++++|+++.|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 122367799999999874
No 278
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.81 E-value=1.9e-08 Score=67.31 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=40.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
..++++++|.+|||||||++++.+.+.... ....|.+.....+..+. .+.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 347999999999999999999998665432 23344444444444443 688999998
No 279
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.79 E-value=2.4e-08 Score=65.63 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=38.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
...+++++|.+|||||||+|++.+.+... ..+..|.+.....+..+. .+.++|+||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 45789999999999999999998865432 123333333333333332 478999998
No 280
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.79 E-value=2.5e-08 Score=66.46 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=41.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 69 (133)
...++++++|.++|||||+++++.+..+.. .....+.+.....+..+ ..+.+|||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 345799999999999999999999876642 22333444444545443 35789999983
No 281
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.78 E-value=1.2e-07 Score=72.76 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=80.2
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
+...+-+.+.++|+.+||||.+++.++++.+...+..+....+....+...+....+.+-|.+.. ......... ..+|
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 34556789999999999999999999999888766666666666666666666667788887764 222222222 7899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhCCCcccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQGIHIQSL 118 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 118 (133)
++.++||.+++.||..+..-++.-... -..|.+
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~ 530 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCL 530 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc-cCCceE
Confidence 999999999999998877655544333 333433
No 282
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=8.3e-09 Score=71.86 Aligned_cols=108 Identities=20% Similarity=0.292 Sum_probs=71.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEE--EEEECCeEEEEEEEeCCCcccc-ccc--ccccccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ--TLAVNDATVKFEIWDTAGQERY-HSL--APMYYRG 82 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~d~~g~~~~-~~~--~~~~~~~ 82 (133)
....+|+++|..+|||||+.+....+-.+.+. .-.+...+ .-.+.+.-+.+++||.|||-.+ .+. ....++.
T Consensus 25 ~~kp~ilLMG~rRsGKsSI~KVVFhkMsPneT---lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~ 101 (347)
T KOG3887|consen 25 GMKPRILLMGLRRSGKSSIQKVVFHKMSPNET---LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRG 101 (347)
T ss_pred CCCceEEEEeecccCcchhhheeeeccCCCce---eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhc
Confidence 34567999999999999987777665433322 11111111 1112335578999999998654 332 3567899
Q ss_pred cCEEEEEEECCCh--hhHHHHHHHHHHHHHhCCCcccc
Q 032789 83 AAAAIIVYDITNQ--ASFERAKKWVQELQAQGIHIQSL 118 (133)
Q Consensus 83 ~~~iv~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~ 118 (133)
+.++++|.|..+. +....+...+.+....+|++.+-
T Consensus 102 ~gALifvIDaQddy~eala~L~~~v~raykvNp~in~E 139 (347)
T KOG3887|consen 102 VGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFE 139 (347)
T ss_pred cCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEE
Confidence 9999999998774 55666666676666666666543
No 283
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=4.9e-08 Score=72.36 Aligned_cols=91 Identities=23% Similarity=0.276 Sum_probs=64.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCC--CCC---------------------------cccCceeeeEEEEEEEECC
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIE---------------------------FQESTIGAAFFSQTLAVND 56 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~ 56 (133)
.....++++++|...+|||||+-||+.+. ..+ +.+..-|.++......+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 34567899999999999999999987320 000 0011223344444444445
Q ss_pred eEEEEEEEeCCCcccccccccccccccCEEEEEEECCChh
Q 032789 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA 96 (133)
Q Consensus 57 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~ 96 (133)
..+.+.+.|+||+.+|-...-.-..++|+.|+|+|+.+.+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE 122 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence 5579999999999888776667788899999999998764
No 284
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.73 E-value=5.2e-08 Score=63.86 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=39.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
...+++++|.+++||||+++++.+.... ...++.+.+.....+..+. .+.+||+||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578899999999999999999875432 2344555443333333332 689999998
No 285
>COG2262 HflX GTPases [General function prediction only]
Probab=98.73 E-value=8.3e-08 Score=71.08 Aligned_cols=111 Identities=19% Similarity=0.144 Sum_probs=72.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAPM 78 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~---------~~~~~~~~ 78 (133)
.....|.++|-+|+|||||+|++.+.........-...+...+.+.+.+ +..+.+-||.|-- .|++. -.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT-LE 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST-LE 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH-HH
Confidence 4567899999999999999999997654433333333444555555553 4678888999832 22222 22
Q ss_pred cccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccc
Q 032789 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQ 120 (133)
Q Consensus 79 ~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~ 120 (133)
....+|.++.|+|+++|...++++.-...+.+.. .+.|+++.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v 310 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILV 310 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4667999999999999977777765544444432 33444443
No 286
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=6.2e-08 Score=76.86 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=82.1
Q ss_pred CCCCCCCceeeEEEEEcCCCCCHHHHHHHHHhC--CCCC--------------cccCceeeeEEEE--EEEECCeEEEEE
Q 032789 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKG--QFIE--------------FQESTIGAAFFSQ--TLAVNDATVKFE 62 (133)
Q Consensus 1 m~~~~~~~~~~ki~i~G~~~vGKTsli~~l~~~--~~~~--------------~~~~~~~~~~~~~--~~~~~~~~~~~~ 62 (133)
|+...+....-+|.++|.-.+||||+..+++.. ..+. +.+..-|+++.+. ++.+.+ .+.++
T Consensus 1 ~~~~~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iN 79 (697)
T COG0480 1 MARLMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRIN 79 (697)
T ss_pred CCcccccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEE
Confidence 333344566779999999999999999998832 1110 0111223334333 333332 58999
Q ss_pred EEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCC
Q 032789 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIH 114 (133)
Q Consensus 63 l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~ 114 (133)
++|||||-+|.......++-+|+.|+|+|....-..+...-|.+......|.
T Consensus 80 lIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~ 131 (697)
T COG0480 80 LIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPR 131 (697)
T ss_pred EeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCe
Confidence 9999999999999999999999999999999888788888888887764443
No 287
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.71 E-value=7.8e-08 Score=69.23 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=42.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 70 (133)
...++++++|.+||||||++|++.+.+.... ....|.+.....+..+. .+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 3567999999999999999999998765332 23344444445555443 57899999963
No 288
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.70 E-value=6.8e-08 Score=69.17 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=41.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 69 (133)
...++++++|.+||||||++|++.+.+.... ....|.+.....+..+. .+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 3468999999999999999999998764332 23334444444554443 5799999996
No 289
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.69 E-value=4.8e-08 Score=66.09 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=38.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-------cccCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
..+++++|.+|||||||+|.+.+..... ......|.+.....+..+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 4589999999999999999999754311 1122234445555555543 579999998
No 290
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.64 E-value=7.8e-08 Score=70.29 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=45.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 69 (133)
....+++++|-+||||||+||++.+.+... ..+..|.+.....+..+. .+.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCC---CeEEecCCCc
Confidence 445789999999999999999999876643 334447767777777665 4899999994
No 291
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.61 E-value=3e-07 Score=64.01 Aligned_cols=107 Identities=15% Similarity=0.201 Sum_probs=62.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
....|+++|.+|+|||||++.+.............|. ..+. .....++.++|+||.. ... ....+.+|++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~-~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVll 109 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVV-TGKKRRLTFIECPNDI--NAM-IDIAKVADLVLL 109 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEE-ecCCceEEEEeCCchH--HHH-HHHHHhcCEEEE
Confidence 4567999999999999999999864221111111111 1111 1234678999999854 112 234688999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC-CCcccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFS 124 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~ 124 (133)
++|.+.....+. ...+..+..+. |....++.+.|.
T Consensus 110 viDa~~~~~~~~-~~i~~~l~~~g~p~vi~VvnK~D~ 145 (225)
T cd01882 110 LIDASFGFEMET-FEFLNILQVHGFPRVMGVLTHLDL 145 (225)
T ss_pred EEecCcCCCHHH-HHHHHHHHHcCCCeEEEEEecccc
Confidence 999876433222 23444444433 222235666664
No 292
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.61 E-value=2.3e-08 Score=73.95 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=40.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceee---eEEEEEEEECCeEEEEEEEeCCCcccccccc-----ccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA---AFFSQTLAVNDATVKFEIWDTAGQERYHSLA-----PMY 79 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~-----~~~ 79 (133)
..+++|+|+|.+|+|||||||.+.+-...++.....|. +.........+ .-++.+||.||........ ..-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 35789999999999999999999764332222222222 11111111111 1258999999953221111 122
Q ss_pred ccccCEEEEEEE
Q 032789 80 YRGAAAAIIVYD 91 (133)
Q Consensus 80 ~~~~~~iv~v~d 91 (133)
+...|.+|++.+
T Consensus 112 ~~~yD~fiii~s 123 (376)
T PF05049_consen 112 FYRYDFFIIISS 123 (376)
T ss_dssp GGG-SEEEEEES
T ss_pred ccccCEEEEEeC
Confidence 555666666554
No 293
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.58 E-value=1.1e-06 Score=61.81 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=65.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc-------cccccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-------HSLAPMYY 80 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~-------~~~~~~~~ 80 (133)
-..+++++|-|+||||||+..+...+.. .+|+.+. .+-.+..+.+++ ..+++.|+||.-+= .+..-...
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTT-LtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTT-LTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeE-EEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEe
Confidence 3578999999999999999999875443 2333332 223344555665 78999999994221 22334457
Q ss_pred cccCEEEEEEECCChhhHHH-HHHHHHHH
Q 032789 81 RGAAAAIIVYDITNQASFER-AKKWVQEL 108 (133)
Q Consensus 81 ~~~~~iv~v~d~~~~~s~~~-~~~~~~~i 108 (133)
+.+|.+++|.|.+..+--.+ ++.-++.+
T Consensus 138 rtaDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ecccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 77999999999998655443 45556655
No 294
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.52 E-value=1.5e-06 Score=63.78 Aligned_cols=62 Identities=18% Similarity=0.389 Sum_probs=45.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcc----------cCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----------ESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
+...+.|+++|++|.||||+++.+++.....+. .++.........+.-++..+.+.+.||||
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpG 91 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPG 91 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCC
Confidence 456899999999999999999999987433321 23333333444444467888999999999
No 295
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.51 E-value=4.3e-07 Score=59.55 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=38.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
....+++++|.+||||||+++.+.+..... .....+.+........+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCC
Confidence 356789999999999999999999865322 11112222333333333 3689999998
No 296
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.49 E-value=1.4e-07 Score=72.26 Aligned_cols=94 Identities=21% Similarity=0.425 Sum_probs=75.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+|+.|+|..++|||+++++++.+.|.+...+..| .+.+++..++...-+.+.|.+|... ..+....|++|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 467999999999999999999999999876544443 3456666677777888888888443 457788999999
Q ss_pred EEECCChhhHHHHHHHHHHHH
Q 032789 89 VYDITNQASFERAKKWVQELQ 109 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~ 109 (133)
||.+.+..+|+.++.+...+.
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~ 122 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMS 122 (749)
T ss_pred EEEeccccCHHHHHHHHhhcc
Confidence 999999999999986655553
No 297
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.49 E-value=1.9e-06 Score=62.21 Aligned_cols=110 Identities=17% Similarity=0.181 Sum_probs=69.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---cc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HSLAPMY---YR 81 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~----~~~~~~~---~~ 81 (133)
...+-++|-||+|||||++.+...+.. ..|..|.-.+ ..-.+.+++ ...+.+=|.||.-+= +.+-..| ++
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P-~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRP-HIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeecc-ccceeeccc-cceeEeccCccccccccccCcccHHHHHHHH
Confidence 446789999999999999999986554 3444333221 111233332 234889999994321 2222333 56
Q ss_pred ccCEEEEEEECCCh---hhHHHHHHHHHHHHHh---CCCccccccc
Q 032789 82 GAAAAIIVYDITNQ---ASFERAKKWVQELQAQ---GIHIQSLLQR 121 (133)
Q Consensus 82 ~~~~iv~v~d~~~~---~s~~~~~~~~~~i~~~---~~~~~~~l~~ 121 (133)
.++.+++|+|++.+ +-+++++....++..+ ..+-|.+++-
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVa 319 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVA 319 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEE
Confidence 78999999999988 7788877665555443 3444555443
No 298
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.41 E-value=6.8e-07 Score=68.19 Aligned_cols=118 Identities=12% Similarity=0.064 Sum_probs=71.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCC---CCcccCceeeeEEEEEE---------------EEC-C-----------
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF---IEFQESTIGAAFFSQTL---------------AVN-D----------- 56 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~-~----------- 56 (133)
++..++|.++|.-..|||||++.|.+... .++.......+...... ... +
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 45678999999999999999999996422 22222222111111000 000 0
Q ss_pred ----eEEEEEEEeCCCcccccccccccccccCEEEEEEECCCh-hhHHHHHHHHHHHHHh-CCCccccccccccc
Q 032789 57 ----ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ-ASFERAKKWVQELQAQ-GIHIQSLLQRFFSC 125 (133)
Q Consensus 57 ----~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~-~s~~~~~~~~~~i~~~-~~~~~~~l~~~~~~ 125 (133)
....+.+.|+||+++|.......+..+|++++|+|+++. ...+. .+.+..+... .++..+++.+.|.+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEIMKLKHIIILQNKIDLV 184 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHHcCCCcEEEEEeccccc
Confidence 023689999999999876666667889999999999874 22222 2333333222 23445677777654
No 299
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=1.2e-06 Score=64.52 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=45.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCc---------ccCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF---------QESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
+...+.++++|++|.|||||+|.|+....... ...+..+......+.-++..+++.+.||||
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPG 88 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPG 88 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCC
Confidence 44569999999999999999999987754432 112333333444444567889999999999
No 300
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.39 E-value=3.2e-07 Score=60.59 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcc------cCceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQ------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~ 72 (133)
-.++++|.+|||||||+|.+....-.... ......+.....+.... .-.+.|+||-..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCcc
Confidence 36789999999999999999986322111 11111112222333322 2378899996553
No 301
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=2.3e-06 Score=67.07 Aligned_cols=107 Identities=19% Similarity=0.287 Sum_probs=76.0
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCccc---------------CceeeeEEEE--EEEE---CCeEEEEEE
Q 032789 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE---------------STIGAAFFSQ--TLAV---NDATVKFEI 63 (133)
Q Consensus 4 ~~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~---------------~~~~~~~~~~--~~~~---~~~~~~~~l 63 (133)
+++.....++.++|.-+.|||+|..-+..+..+..+. ...|.++... ++-. +++.+-+++
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 4456677899999999999999999888654433211 1112222222 2222 456678899
Q ss_pred EeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHH
Q 032789 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110 (133)
Q Consensus 64 ~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~ 110 (133)
.|+|||-.|.......++.+|++|+++|+.+.-.++.-+-....+++
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~ 248 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN 248 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc
Confidence 99999999999889999999999999999987776655444444443
No 302
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.36 E-value=5.1e-06 Score=58.14 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=45.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC---------cccCceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE---------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~ 71 (133)
.-.++|+++|.+|.||||+++.+...+... ....+.........+.-++-.+++.+.||||-.+
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 357899999999999999999988543322 2223334434444555567788999999999544
No 303
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.34 E-value=1.5e-06 Score=64.49 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=36.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC----cccCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE----FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 69 (133)
.+++++|.+|||||||+|++.+..... ......|.+.....+..++ .+.++||||-
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCC
Confidence 489999999999999999999753211 1112223333344444432 3579999994
No 304
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.33 E-value=2.3e-06 Score=70.66 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCe-----------EE-----EEEEEeCCCcccccccccccccccC
Q 032789 21 AGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-----------TV-----KFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 21 vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-----~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
++||||+..+.+........-.+.-......+..+.. .. .+.+|||||++.|.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 4599999999987765544434433333333333210 01 2799999999999877777788899
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 85 AAIIVYDITN---QASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 85 ~iv~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
++++|+|+++ +.+++.+. .+........+++.++|.+
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHHcCCCEEEEEECCCCc
Confidence 9999999987 45555443 3333333344555555553
No 305
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.32 E-value=2.8e-07 Score=58.05 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~ 35 (133)
||+++|..|||||||.+.+.+...
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ 26 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT 26 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh
Confidence 789999999999999999987654
No 306
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=1.8e-06 Score=64.79 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=65.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh--C----------CCCC--------cccCceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK--G----------QFIE--------FQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~--~----------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
++-..+|+-.|.+|||||-++++- + +-.. +-+..-|++..+..+.++-.++.+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 455678899999999999999872 1 0000 0112335555555555555558999999999
Q ss_pred cccccccccccccccCEEEEEEECCChh
Q 032789 69 QERYHSLAPMYYRGAAAAIIVYDITNQA 96 (133)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iv~v~d~~~~~ 96 (133)
|++|+.-...-+..+|..|+|.|+...-
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGi 118 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGI 118 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCc
Confidence 9999988888899999999999998743
No 307
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.32 E-value=4.4e-06 Score=58.74 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
....++++|+.++||||+++.+.+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 45689999999999999999999865
No 308
>PRK13796 GTPase YqeH; Provisional
Probab=98.29 E-value=1.6e-06 Score=64.52 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC----cccCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE----FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 69 (133)
.+++++|.+|||||||+|++.....-. ......|.+.....+..++ ...++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCc
Confidence 479999999999999999998643111 1112233344444444443 2479999995
No 309
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.28 E-value=4.9e-06 Score=61.70 Aligned_cols=82 Identities=16% Similarity=-0.067 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-C-CcccCceeeeEEEEEEEECC---------------eEEEEEEEeCCCccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQF-I-EFQESTIGAAFFSQTLAVND---------------ATVKFEIWDTAGQERYH 73 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~d~~g~~~~~ 73 (133)
.|+.++|.+++|||||.+.+.+... . ..|+.+. .+.....+.+.+ ....+.+.|.+|..+=.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftT-i~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTT-IEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCC-CCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 7899999999999999999998765 3 2332221 112222222222 22467899999954311
Q ss_pred ----c---cccccccccCEEEEEEECC
Q 032789 74 ----S---LAPMYYRGAAAAIIVYDIT 93 (133)
Q Consensus 74 ----~---~~~~~~~~~~~iv~v~d~~ 93 (133)
. ..-..++.+|+++.|++..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1 2233478899999999985
No 310
>PRK12288 GTPase RsgA; Reviewed
Probab=98.27 E-value=3e-06 Score=62.64 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=34.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCccc------CceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQE------STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~ 73 (133)
++++|.+|||||||+|+|++........ .....+.....+.+.+. ..++|+||-..+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 7899999999999999999754322111 11112222333333321 2599999966543
No 311
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.26 E-value=5.4e-06 Score=59.70 Aligned_cols=59 Identities=24% Similarity=0.248 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC------CCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG------QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~ 73 (133)
-.+++|.+|||||||+|++... ..+.........+....-+...+.+ .+.||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 4689999999999999999863 2222222222233344444442211 688999976644
No 312
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=7.2e-06 Score=63.05 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=74.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC-CCc------------ccCceeeeEEEEEEE--E-CCeEEEEEEEeCCCccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF-IEF------------QESTIGAAFFSQTLA--V-NDATVKFEIWDTAGQER 71 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~-~~~------------~~~~~~~~~~~~~~~--~-~~~~~~~~l~d~~g~~~ 71 (133)
.+.-++.|+..-.=|||||+-+++...- .+. -+..-|++...++.. + ++..+.++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4455788998888999999999985322 110 112334444333332 2 35668999999999999
Q ss_pred ccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHH
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~ 110 (133)
|.......+..++|+++|+|++..---|.+-.+...+..
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~ 176 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA 176 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc
Confidence 999999999999999999999986666666666666654
No 313
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.24 E-value=3e-06 Score=59.75 Aligned_cols=59 Identities=20% Similarity=0.143 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCc------ccCceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEF------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~ 73 (133)
-.++++|.+|||||||+|++.+...... .......+.....+...+ -.++|+||-..+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence 3688999999999999999997532211 111111223333343432 2799999966543
No 314
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.19 E-value=1.3e-05 Score=55.88 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=55.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC--CCCCccc---CceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------ccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQE---STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAP 77 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~------~~~ 77 (133)
...-|.++|+.++|||+|+|++.+. .+.-... .|.|.-........ +....+.++||+|...... ...
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHH
Confidence 3456889999999999999999988 5542211 22232222111111 2347899999999654322 112
Q ss_pred ccccc--cCEEEEEEECCC-hhhHHHHHHHH
Q 032789 78 MYYRG--AAAAIIVYDITN-QASFERAKKWV 105 (133)
Q Consensus 78 ~~~~~--~~~iv~v~d~~~-~~s~~~~~~~~ 105 (133)
..+.. ++.+|+..+... ....+.+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~~~~~~l~~~~ 115 (224)
T cd01851 85 FALATLLSSVLIYNSWETILGDDLAALMGLL 115 (224)
T ss_pred HHHHHHHhCEEEEeccCcccHHHHHHHHHHH
Confidence 22333 677777666554 34444444333
No 315
>PRK12289 GTPase RsgA; Reviewed
Probab=98.19 E-value=4.1e-06 Score=62.01 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=34.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcc------cCceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQ------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~ 71 (133)
++|+|.+|||||||+|.++...-.... ......+.....+...+. -.++||||-..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 799999999999999999965322111 111112233333434322 26999999543
No 316
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.4e-05 Score=59.05 Aligned_cols=83 Identities=20% Similarity=0.163 Sum_probs=52.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-Cccc-----CceeeeEEEEEEE-----------ECCeEEEEEEEeCCCcccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQE-----STIGAAFFSQTLA-----------VNDATVKFEIWDTAGQERY 72 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~-----~~~~~~~~~~~~~-----------~~~~~~~~~l~d~~g~~~~ 72 (133)
.+++.|+|.||||||||.+.+...... ..|+ |..|..+-+. .. ..-....+.++|.+|.-+=
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 468999999999999999999987643 2333 2333322111 10 0123467899999984321
Q ss_pred ----cccc---cccccccCEEEEEEECC
Q 032789 73 ----HSLA---PMYYRGAAAAIIVYDIT 93 (133)
Q Consensus 73 ----~~~~---~~~~~~~~~iv~v~d~~ 93 (133)
..+- -.-++++|+++-|+++.
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 1122 22377899999999987
No 317
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.18 E-value=1.9e-05 Score=59.46 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=67.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC----CCCCcc----------cCcee---eeE-------EEEEEEE-CCeEEEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG----QFIEFQ----------ESTIG---AAF-------FSQTLAV-NDATVKFEI 63 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~----~~~~~~----------~~~~~---~~~-------~~~~~~~-~~~~~~~~l 63 (133)
-++.|.++|+.++|||||+++|.+. ...+++ .+..| .+. ...++.. ++...++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4678999999999999999999987 333111 11222 111 1112222 345578999
Q ss_pred EeCCCccc--------ccc------c---------------cccccc-ccCEEEEEE-ECC----ChhhHHHH-HHHHHH
Q 032789 64 WDTAGQER--------YHS------L---------------APMYYR-GAAAAIIVY-DIT----NQASFERA-KKWVQE 107 (133)
Q Consensus 64 ~d~~g~~~--------~~~------~---------------~~~~~~-~~~~iv~v~-d~~----~~~s~~~~-~~~~~~ 107 (133)
.||+|-.. -.. . .+..++ .++..|+|. |.+ .++.+.+. ++|+++
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999211 111 0 112233 577777777 664 23445444 478999
Q ss_pred HHHhCCCccccccccc
Q 032789 108 LQAQGIHIQSLLQRFF 123 (133)
Q Consensus 108 i~~~~~~~~~~l~~~~ 123 (133)
+.+..-...+++...+
T Consensus 176 Lk~~~kPfiivlN~~d 191 (492)
T TIGR02836 176 LKELNKPFIILLNSTH 191 (492)
T ss_pred HHhcCCCEEEEEECcC
Confidence 9886555555555544
No 318
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.18 E-value=4.1e-06 Score=60.81 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=64.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCc---------cccccccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ---------ERYHSLAPMY 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~---------~~~~~~~~~~ 79 (133)
...-|.++|-+|||||||++++......+....-...+...+..... .+..+.+-||.|- ..|.+. -..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-sg~~vlltDTvGFisdLP~~LvaAF~AT-Lee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-SGNFVLLTDTVGFISDLPIQLVAAFQAT-LEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-CCcEEEEeechhhhhhCcHHHHHHHHHH-HHH
Confidence 45678999999999999999998544433222222222222222222 2357788899882 112222 123
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHHHhC
Q 032789 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~ 112 (133)
...+|.++-|.|++.|..-++.+.-+..+....
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~ig 287 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIG 287 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcC
Confidence 667899999999999987777666655555543
No 319
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.17 E-value=9.1e-06 Score=61.58 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=76.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCC------------cccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQ--FIE------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~ 75 (133)
.-+|+|+..-.=|||||+..++.+. |.. ..+..-|+++-.+...+.-..+.+.+.|||||.+|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3478899988999999999998642 222 11123344554443333333489999999999999999
Q ss_pred ccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccce
Q 032789 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSCI 126 (133)
Q Consensus 76 ~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 126 (133)
....+...|++++++|+.+-.-.| -+--+....++...-.+++.+.+...
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALALGLKPIVVINKIDRPD 134 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHHcCCCcEEEEeCCCCCC
Confidence 999999999999999998642222 12223334444445455555555443
No 320
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.17 E-value=2.6e-06 Score=64.86 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=46.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 70 (133)
.+.|.+||-+||||||+||.+.+.+-.. -+.|.|.+.+-.++.++. .+.|+||||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 5889999999999999999999876554 446677766777776665 78999999953
No 321
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=7.4e-06 Score=60.55 Aligned_cols=117 Identities=13% Similarity=0.221 Sum_probs=81.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCccc-CceeeeEEEEEEEE------CCe------------------------
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAV------NDA------------------------ 57 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~------------------------ 57 (133)
...-|+++|.=+.||||+++.++...+..... +....++....+.- .+.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 45679999999999999999999988875221 11111111111110 000
Q ss_pred ---------EEEEEEEeCCCc-----------ccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccc
Q 032789 58 ---------TVKFEIWDTAGQ-----------ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQS 117 (133)
Q Consensus 58 ---------~~~~~l~d~~g~-----------~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 117 (133)
--.+.++|+||. .+|....+.+...+|.|+++||....+--++.++-+..++.+.-.+-+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRV 216 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRV 216 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEE
Confidence 025789999993 123344567788899999999998877778888889999888888888
Q ss_pred cccccccc
Q 032789 118 LLQRFFSC 125 (133)
Q Consensus 118 ~l~~~~~~ 125 (133)
+|++.+..
T Consensus 217 VLNKADqV 224 (532)
T KOG1954|consen 217 VLNKADQV 224 (532)
T ss_pred Eecccccc
Confidence 88887753
No 322
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.15 E-value=1.7e-05 Score=58.61 Aligned_cols=68 Identities=12% Similarity=0.215 Sum_probs=51.4
Q ss_pred EEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEECCC----------hhhHHHHHHHHHHHHHhC--CCcccc
Q 032789 51 TLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQG--IHIQSL 118 (133)
Q Consensus 51 ~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~----------~~s~~~~~~~~~~i~~~~--~~~~~~ 118 (133)
.+.+++ ..+.+||.+|+...+..|..++.+++++++|+|+++ ...+++....++.+.+.. .+.|++
T Consensus 178 ~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pii 255 (342)
T smart00275 178 AFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSII 255 (342)
T ss_pred EEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEE
Confidence 344444 789999999999999999999999999999999996 245666666667766542 445554
Q ss_pred cc
Q 032789 119 LQ 120 (133)
Q Consensus 119 l~ 120 (133)
+.
T Consensus 256 l~ 257 (342)
T smart00275 256 LF 257 (342)
T ss_pred EE
Confidence 43
No 323
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=1.6e-05 Score=60.46 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=74.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC---------------CcccCceeeeEEEEEEEE---CCeEEEEEEEeCCCc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI---------------EFQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQ 69 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~---~~~~~~~~l~d~~g~ 69 (133)
.+.-+..++..-.=|||||+.|++...-. -+.+..+.+--....+.+ ++..+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34446778888889999999999853111 012223333223333333 357799999999999
Q ss_pred ccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHh
Q 032789 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111 (133)
Q Consensus 70 ~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~ 111 (133)
-+|.-...+.+..|.|.++|+|++..-.-|.+-+.+..+.+.
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~ 128 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN 128 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcC
Confidence 999887888899999999999999987777777777777653
No 324
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.7e-05 Score=60.75 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=76.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
+.+=|.++|.-.-|||||+-.+...+......-.+.-......+..+. ..-.+.+.|||||+.|..++..=.+-+|.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 345688999999999999999988777665444444444444555442 2347899999999999999888889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQGIHIQSLLQR 121 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~ 121 (133)
+|+|++|---.|.++ -++..+ ..+.|+++..
T Consensus 84 LVVa~dDGv~pQTiE-AI~hak--~a~vP~iVAi 114 (509)
T COG0532 84 LVVAADDGVMPQTIE-AINHAK--AAGVPIVVAI 114 (509)
T ss_pred EEEEccCCcchhHHH-HHHHHH--HCCCCEEEEE
Confidence 999999843333322 122222 3455655543
No 325
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.13 E-value=2.1e-05 Score=57.44 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=55.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEE---------------CCeEEEEEEEeCCCccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV---------------NDATVKFEIWDTAGQER 71 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~d~~g~~~ 71 (133)
....+|+.|+|.++|||||+.+.+......+..-|-..++...-.+.. +.....++++|..|.-+
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 446789999999999999999999987665444343333322222211 22346789999998432
Q ss_pred cc----cccc---ccccccCEEEEEEECC
Q 032789 72 YH----SLAP---MYYRGAAAAIIVYDIT 93 (133)
Q Consensus 72 ~~----~~~~---~~~~~~~~iv~v~d~~ 93 (133)
=. .+-. .-++.+|+++-|+++.
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEec
Confidence 11 1212 2356688888777665
No 326
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.09 E-value=2.8e-05 Score=56.86 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCcccccccccccccccCEEEEEEECCCh----------hhHHHHHHHHHHHHHhC--CCcccccc
Q 032789 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG--IHIQSLLQ 120 (133)
Q Consensus 58 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~----------~s~~~~~~~~~~i~~~~--~~~~~~l~ 120 (133)
...+.+||++|+...+..|..++.+++++++|+|+++- ..+++....+..+.++. .+.|+++.
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~ 234 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILF 234 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEE
Confidence 48899999999999999999999999999999999973 45666666666665543 34555443
No 327
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=2.9e-05 Score=60.01 Aligned_cols=89 Identities=21% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhC--------------------CCCC---------cccCceeeeEEEEEEEECC
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG--------------------QFIE---------FQESTIGAAFFSQTLAVND 56 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~--------------------~~~~---------~~~~~~~~~~~~~~~~~~~ 56 (133)
+....+.++++|.-.+|||||..+++.. +.+- +.++..|.+.......++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3446789999999999999999888732 1111 1112334445555555566
Q ss_pred eEEEEEEEeCCCcccccccccccccccCEEEEEEECCC
Q 032789 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN 94 (133)
Q Consensus 57 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~ 94 (133)
....+.+.|.||+..|....-.-...+|+.++|+|++.
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST 290 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence 66889999999999988777777788999999999875
No 328
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.8e-05 Score=61.04 Aligned_cols=111 Identities=11% Similarity=0.135 Sum_probs=75.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
++.+-|-+||.-.=|||||+..+..........-.+.-.+..-.+... .+..+.+.|||||..|..++.+-.+-+|++|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 356678899999999999999998766554333333323333344444 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCcccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~ 122 (133)
+|+..+|---.|.++ -+... +..++|+++..+
T Consensus 230 LVVAadDGVmpQT~E-aIkhA--k~A~VpiVvAin 261 (683)
T KOG1145|consen 230 LVVAADDGVMPQTLE-AIKHA--KSANVPIVVAIN 261 (683)
T ss_pred EEEEccCCccHhHHH-HHHHH--HhcCCCEEEEEe
Confidence 999998843332222 11222 235666665443
No 329
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=2.1e-05 Score=57.79 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=59.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCcccCceeeeEEEEEEEE-------CCeEEEEEEEeCCCccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQESTIGAAFFSQTLAV-------NDATVKFEIWDTAGQER 71 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~d~~g~~~ 71 (133)
.++.++++.++|.-.+|||||++++..-. .+++.+..+..+..-..+.. .+..+.+.+.|+||+..
T Consensus 3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas 82 (522)
T KOG0461|consen 3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS 82 (522)
T ss_pred CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence 34567999999999999999999998532 22222233333332222221 34567889999999987
Q ss_pred ccccccccccccCEEEEEEECCCh
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITNQ 95 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~~ 95 (133)
..+..-.-.+-.|..++|+|+...
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG 106 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKG 106 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcc
Confidence 655444455556778888888754
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.06 E-value=1.6e-05 Score=57.34 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccc------CceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE------STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~ 73 (133)
-.++++|.+|||||||++.+.+........ .....+.....+.... ...++|+||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCccC
Confidence 468999999999999999998754332111 1111222233333332 12699999976643
No 331
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.01 E-value=4.5e-05 Score=56.21 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=41.7
Q ss_pred EEEEEEeCCCcccccccccccccccCEEEEEEECCCh----------hhHHHHHHHHHHHHHhC
Q 032789 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG 112 (133)
Q Consensus 59 ~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~----------~s~~~~~~~~~~i~~~~ 112 (133)
.++.++|.+||..-+..|-.++.+++++++|+++++= ....+-...++.|.++.
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 7899999999988888899999999999999999841 22333335666666553
No 332
>PRK00098 GTPase RsgA; Reviewed
Probab=98.01 E-value=1.7e-05 Score=57.52 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
.++++|.+|||||||+|.+.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999998754
No 333
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=5.1e-05 Score=53.58 Aligned_cols=98 Identities=14% Similarity=0.219 Sum_probs=65.9
Q ss_pred eeEEEEEcCCCC--CHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 10 NAKLVLLGDVGA--GKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 10 ~~ki~i~G~~~v--GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
+.-++++|-++| ||-++..++....+..+........++.+++...-....+.+.-.+--..+.-..........++|
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 456789999999 999999999998887766666666666665533222222333333222222222233344456899
Q ss_pred EEEECCChhhHHHHHHHHHH
Q 032789 88 IVYDITNQASFERAKKWVQE 107 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~ 107 (133)
++||.+....++.++.|++.
T Consensus 84 mvfdlse~s~l~alqdwl~h 103 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPH 103 (418)
T ss_pred EEEeccchhhhHHHHhhccc
Confidence 99999999999999999883
No 334
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.93 E-value=6.2e-05 Score=55.04 Aligned_cols=98 Identities=19% Similarity=0.098 Sum_probs=59.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc----cccccc---ccccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HSLAPM---YYRGA 83 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~----~~~~~~---~~~~~ 83 (133)
-|-++|-|++|||||++.+...+.. ..|+.|.-.+. --.+.. ...-.+.+=|.||.-+= ..+-.. -++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~Pn-LGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPN-LGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCc-ccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 4668999999999999999976544 45554443321 111222 23347889999984221 112222 35668
Q ss_pred CEEEEEEECCChh---hHHHHHHHHHHHHHh
Q 032789 84 AAAIIVYDITNQA---SFERAKKWVQELQAQ 111 (133)
Q Consensus 84 ~~iv~v~d~~~~~---s~~~~~~~~~~i~~~ 111 (133)
.+++.|+|++..+ -.++.+....++..+
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y 269 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKY 269 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHh
Confidence 8999999999543 244444444444444
No 335
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.91 E-value=1.2e-05 Score=57.26 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=64.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccC-ceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSL 75 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~d~~g----------~~~~~~~ 75 (133)
...++.+++.|.+|||||||++-+...+....... ..|.+.....+.+. ..+.+.|.|| ..++..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence 46789999999999999999999987655543322 33333323333233 4788999999 1233334
Q ss_pred ccccccccCEEE---EEEECCChhhHHHHH-HHHHHHHHhCCCcccccccccc
Q 032789 76 APMYYRGAAAAI---IVYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 76 ~~~~~~~~~~iv---~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
.+.++.+-+-.+ +.+|.+- .++... ..++.+.++...--+++..|+.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge~~VP~t~vfTK~DK 260 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASV--PIQPTDNPEIAWLGENNVPMTSVFTKCDK 260 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccC--CCCCCChHHHHHHhhcCCCeEEeeehhhh
Confidence 444444443333 3334332 122222 3445555555555556666654
No 336
>PRK13768 GTPase; Provisional
Probab=97.87 E-value=1.3e-05 Score=56.76 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 032789 11 AKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~ 31 (133)
..+++.|++||||||++..+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~ 23 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALS 23 (253)
T ss_pred EEEEEECCCCccHHHHHHHHH
Confidence 468899999999999887766
No 337
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.82 E-value=2e-05 Score=49.21 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.|+|.|.+||||||+++++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 338
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.80 E-value=7.2e-05 Score=55.06 Aligned_cols=87 Identities=24% Similarity=0.220 Sum_probs=58.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-------------------------------cccCceeeeEEEEEEEEC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE-------------------------------FQESTIGAAFFSQTLAVN 55 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 55 (133)
....++.+-+|.-.-||||||-||+...-.- +-+...|+++..-...+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3467899999999999999999998431100 000122333333333344
Q ss_pred CeEEEEEEEeCCCcccccccccccccccCEEEEEEECC
Q 032789 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT 93 (133)
Q Consensus 56 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~ 93 (133)
..+.++.+-|+|||++|-+....-...+|+.|+++|..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR 120 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR 120 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc
Confidence 44578999999999999766555566677788877763
No 339
>PRK08118 topology modulation protein; Reviewed
Probab=97.80 E-value=2.2e-05 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-||+|+|++||||||+++++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999864
No 340
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.75 E-value=2.8e-05 Score=59.44 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=66.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc--cccccccccc-
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY--HSLAPMYYRG- 82 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~--~~~~~~~~~~- 82 (133)
......++++|-++||||||++.+...... +.|..|. -.....++. -....+++.||||.-+. ...+...+..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTT-ksL~vGH~d--ykYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTT-KLLLVGHLD--YKYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCccccc-chhhhhhhh--hheeeeeecCCccccCcchhhhhHHHHHHH
Confidence 345678999999999999999988765443 2232222 112222222 23467899999995332 1111111111
Q ss_pred ------cCEEEEEEECCCh--hhHHHHHHHHHHHHHhCCCcccccccc
Q 032789 83 ------AAAAIIVYDITNQ--ASFERAKKWVQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 83 ------~~~iv~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~l~~~ 122 (133)
-.+|+++-|++.. .|..+--..+..|.--..|-|.+++-+
T Consensus 242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlN 289 (620)
T KOG1490|consen 242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLN 289 (620)
T ss_pred HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEee
Confidence 2378889999874 555555566677766666665555443
No 341
>PRK07261 topology modulation protein; Provisional
Probab=97.72 E-value=3.5e-05 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
||+|+|.+|+|||||++.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 342
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.71 E-value=8.9e-05 Score=49.46 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 66 (133)
||++-|++|+||||++++++..--. ...+..| +....+..++...-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc-cCCccce--EEeecccCCCceEEEEEEEC
Confidence 6899999999999999998753110 0112223 33344444555566666666
No 343
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.66 E-value=4.8e-05 Score=51.24 Aligned_cols=22 Identities=41% Similarity=0.751 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
||+|+|+||+||||+++++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 344
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.66 E-value=4.2e-05 Score=49.04 Aligned_cols=20 Identities=45% Similarity=0.762 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 032789 13 LVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~ 32 (133)
|+++|++||||||+++++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 345
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.65 E-value=5.1e-05 Score=56.44 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=43.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 69 (133)
...+++.|+|-++|||||+|+++...+.++- -...|.+..-+++..+. .+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence 4678999999999999999999998877652 23444444455555554 7899999994
No 346
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.63 E-value=0.00041 Score=49.33 Aligned_cols=96 Identities=18% Similarity=0.147 Sum_probs=60.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc-c------ccccccccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-Y------HSLAPMYYR 81 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~------~~~~~~~~~ 81 (133)
..++-++|-+++||||++..+.+.... ++|..+.-. ..+..+.+++ -++++.|.||.-+ . ....-...+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~-~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavar 135 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLT-TVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVAR 135 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEE-EecceEeccc--cceeeecCcchhcccccCCCCccEEEEEee
Confidence 347889999999999999999775332 223222211 1122222333 6799999998421 1 113344567
Q ss_pred ccCEEEEEEECCChhhHHHHH-HHHHHH
Q 032789 82 GAAAAIIVYDITNQASFERAK-KWVQEL 108 (133)
Q Consensus 82 ~~~~iv~v~d~~~~~s~~~~~-~~~~~i 108 (133)
.++.+++|.|+-.|-+...+- .-++-+
T Consensus 136 tcnli~~vld~~kp~~hk~~ie~eleg~ 163 (358)
T KOG1487|consen 136 TCNLIFIVLDVLKPLSHKKIIEKELEGF 163 (358)
T ss_pred cccEEEEEeeccCcccHHHHHHHhhhcc
Confidence 789999999999987776643 344433
No 347
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.56 E-value=0.00037 Score=42.36 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=52.2
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 13 LVLLG-DVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 13 i~i~G-~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
|.+.| ..|+||||++..+...-... ..+..-.+ .+ ..+.+.++|+++.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-~~~vl~~d-------~d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-GKRVLLID-------LD-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-CCcEEEEe-------CC-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56677 77999999987765421111 11111111 11 2267899999986432 22367888999999987
Q ss_pred CCChhhHHHHHHHHH
Q 032789 92 ITNQASFERAKKWVQ 106 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~ 106 (133)
. +..++..+..+++
T Consensus 71 ~-~~~s~~~~~~~~~ 84 (104)
T cd02042 71 P-SPLDLDGLEKLLE 84 (104)
T ss_pred C-CHHHHHHHHHHHH
Confidence 5 6667777777766
No 348
>PRK06217 hypothetical protein; Validated
Probab=97.53 E-value=9.5e-05 Score=49.77 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+|+|+|.+||||||+++++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 349
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.52 E-value=0.00044 Score=45.72 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=38.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 67 (133)
....||.+-|++||||||++.++...--... .+.+- +...++.-++..+-+.+.|+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgG-f~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGG-FITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeee-EEeeeeecCCeEeeeEEEEcc
Confidence 3568999999999999999999874311111 12221 445556666777778888877
No 350
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00058 Score=54.03 Aligned_cols=119 Identities=15% Similarity=0.241 Sum_probs=74.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCce-----------e--------------------------------
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI-----------G-------------------------------- 44 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~-----------~-------------------------------- 44 (133)
....||+|.|..+.||||+++.++.++..++..-.+ |
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 346799999999999999999999765544221100 0
Q ss_pred -eeEEEEEEEECCe----EEEEEEEeCCCcc---cccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcc
Q 032789 45 -AAFFSQTLAVNDA----TVKFEIWDTAGQE---RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQ 116 (133)
Q Consensus 45 -~~~~~~~~~~~~~----~~~~~l~d~~g~~---~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 116 (133)
..--.+.+..++. .-.+.+.|.||-. ....-...+..++|++|+|.+.-+... ...+.++....+..|++-
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt-~sek~Ff~~vs~~KpniF 265 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT-LSEKQFFHKVSEEKPNIF 265 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH-HHHHHHHHHhhccCCcEE
Confidence 0000001111110 0145677888743 333344667888999999998655432 334567777777789999
Q ss_pred cccccccccee
Q 032789 117 SLLQRFFSCIN 127 (133)
Q Consensus 117 ~~l~~~~~~~~ 127 (133)
++..+||.-.+
T Consensus 266 IlnnkwDasas 276 (749)
T KOG0448|consen 266 ILNNKWDASAS 276 (749)
T ss_pred EEechhhhhcc
Confidence 99998886443
No 351
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.51 E-value=9e-05 Score=52.04 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
+.++|++|||||||++-+.+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999875
No 352
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.50 E-value=0.00013 Score=41.38 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|++.|++|+||||+++.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999764
No 353
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.48 E-value=0.00014 Score=54.36 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=56.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--cccccccccC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--LAPMYYRGAA 84 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~--~~~~~~~~~~ 84 (133)
..+.+-|.++|-+++||||+||.|...+.+.- .+-.|++--...++. .-.+-|+|+||-..-.. ..+.. ..
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~iv---Lk 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIV---LK 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHH---hh
Confidence 44677899999999999999999999887762 244444322222222 24788999999543221 11112 24
Q ss_pred EEEEEEECCChhhH
Q 032789 85 AAIIVYDITNQASF 98 (133)
Q Consensus 85 ~iv~v~d~~~~~s~ 98 (133)
|+|-|=++.+|+.+
T Consensus 377 GvVRVenv~~pe~y 390 (572)
T KOG2423|consen 377 GVVRVENVKNPEDY 390 (572)
T ss_pred ceeeeeecCCHHHH
Confidence 78889999988643
No 354
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00037 Score=54.45 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=48.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+=++++|++|+|||||++.+...-.. .++..-..+.+ -..+...++.+.++|. +..++ -...+-+|.+++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiT-vvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDLVlL 139 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPIT-VVSGKTRRITFLECPS--DLHQM-IDVAKIADLVLL 139 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHH----hhhhccCCceE-EeecceeEEEEEeChH--HHHHH-HhHHHhhheeEE
Confidence 4556779999999999999988764211 11111111211 2345667899999983 32222 234567889999
Q ss_pred EEECC
Q 032789 89 VYDIT 93 (133)
Q Consensus 89 v~d~~ 93 (133)
..|.+
T Consensus 140 lIdgn 144 (1077)
T COG5192 140 LIDGN 144 (1077)
T ss_pred Eeccc
Confidence 99876
No 355
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.47 E-value=7.2e-05 Score=49.31 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 356
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.44 E-value=0.00024 Score=60.10 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=55.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcc------cCceeeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQ------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPM 78 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--------~~~~~~~ 78 (133)
.+|+|++|+||||++++- +.+++-.. ....+-+. .....+.+ +-.++|++|..- ....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 689999999999999987 44443211 01111111 11222233 557999999321 1122333
Q ss_pred cc---------cccCEEEEEEECCChh--hH-------HHHHHHHHHHHHhC-CCccc
Q 032789 79 YY---------RGAAAAIIVYDITNQA--SF-------ERAKKWVQELQAQG-IHIQS 117 (133)
Q Consensus 79 ~~---------~~~~~iv~v~d~~~~~--s~-------~~~~~~~~~i~~~~-~~~~~ 117 (133)
++ +..+|||+++|+.+-- +- +.++..++++.++. ...|+
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PV 246 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPV 246 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 32 3479999999998531 11 23456666666542 34443
No 357
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.43 E-value=0.00015 Score=45.57 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999875
No 358
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.00017 Score=45.11 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI 36 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~ 36 (133)
-.++++|++|+|||++++.+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 47899999999999999999876443
No 359
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.00013 Score=47.67 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=24.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
++..+++|++.|-||+||||++.++..
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 346789999999999999999999984
No 360
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=8.3e-05 Score=55.99 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=72.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCc--------ccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG--------QFIEF--------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~ 72 (133)
+.-+|.++..-.+||||...|++.- ..... -+...|++..+-.+.++=+++++.++|+||+.+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 4457888899999999999997731 10000 0123355556665666556689999999999999
Q ss_pred cccccccccccCEEEEEEECCChhhHHHHHHHHHH
Q 032789 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE 107 (133)
Q Consensus 73 ~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~ 107 (133)
.-....+++-.|++|.|||.+-.-.-+.+..|.+.
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqa 150 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA 150 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc
Confidence 99999999999999999999866555666666543
No 361
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.41 E-value=0.0003 Score=49.70 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=43.8
Q ss_pred ccccccccccccccCEEEEEEECCChh-hHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 70 ERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 70 ~~~~~~~~~~~~~~~~iv~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+++..+.+.++.++|++++|||++++. |++.+.+|+..+........+++.++|.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL 79 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDL 79 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECccc
Confidence 567777788999999999999999876 8999999999887654555555555554
No 362
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.39 E-value=0.00016 Score=45.20 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988754
No 363
>PRK03839 putative kinase; Provisional
Probab=97.38 E-value=0.00019 Score=48.07 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+|+++|.+||||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999764
No 364
>PRK14530 adenylate kinase; Provisional
Probab=97.37 E-value=0.00019 Score=49.56 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.+|+|+|++||||||+++++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999974
No 365
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.37 E-value=0.00027 Score=48.59 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+....-|+++|++||||||+++++...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 335566889999999999999999754
No 366
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.37 E-value=0.0002 Score=46.36 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.|.++|..++|||||++.+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 367
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.36 E-value=0.00054 Score=52.05 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCcccccccc----ccc--ccccCEEEEEEECCCh-hhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 58 TVKFEIWDTAGQERYHSLA----PMY--YRGAAAAIIVYDITNQ-ASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 58 ~~~~~l~d~~g~~~~~~~~----~~~--~~~~~~iv~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
.+.+.++||+|........ ... ....+-+++|.|.+-. +..+. ...+.+..+-.-+++.+.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhccCCcEEEEECccCC
Confidence 4788999999954332211 111 2235788999998643 33333 344444344555666666654
No 368
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.36 E-value=0.0002 Score=46.14 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|+++|++||||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 369
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.36 E-value=0.001 Score=44.80 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=49.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEE--EEEeCCCcc-cccccccccccccCEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF--EIWDTAGQE-RYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~d~~g~~-~~~~~~~~~~~~~~~iv~ 88 (133)
.+.++|++|+|||||++.+.+... ++.|. +.+++..+.+ +-.+.+|.+ +--.....++.+.+.+++
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLI-----PNGDN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC-----CCCcE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 688999999999999999987532 22222 1111211111 111133322 223344555666666655
Q ss_pred --EEECCChhhHHHHHHHHHHHHHh
Q 032789 89 --VYDITNQASFERAKKWVQELQAQ 111 (133)
Q Consensus 89 --v~d~~~~~s~~~~~~~~~~i~~~ 111 (133)
-...-|+.+-+.+.+++.++.++
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~ 120 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEE 120 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHc
Confidence 22233667777777888877653
No 370
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.36 E-value=0.0002 Score=45.82 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.|+++|++|+|||++++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 371
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.35 E-value=0.00021 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++||||||+++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
No 372
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.35 E-value=0.00079 Score=43.22 Aligned_cols=22 Identities=45% Similarity=0.839 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 373
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.00023 Score=52.39 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~ 34 (133)
++++|++||||||+++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
No 374
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.34 E-value=0.0002 Score=47.81 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 375
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.32 E-value=0.00066 Score=48.77 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=43.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCccc----CceeeeEEEEEEEECCeEEEEEEEeCCC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIGAAFFSQTLAVNDATVKFEIWDTAG 68 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~d~~g 68 (133)
.-.++|+.+|.+|.|||||+..+.+.++..+.. +++........+.-++..+++.+.|+.|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 357899999999999999999999877654322 2333222222333356778999999998
No 376
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.31 E-value=0.00022 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++|+|++|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6789999999999999988775
No 377
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00015 Score=54.35 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=55.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEEC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI 92 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~ 92 (133)
++++|..||||||++.-+.+- +.|..|. +..++ ...|....++|+......+.+.+.+=-.+..
T Consensus 352 vFliG~NGsGKST~~~LLtGL-----~~PqsG~------I~ldg-----~pV~~e~ledYR~LfSavFsDyhLF~~ll~~ 415 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGL-----YQPQSGE------ILLDG-----KPVSAEQLEDYRKLFSAVFSDYHLFDQLLGP 415 (546)
T ss_pred EEEECCCCCcHHHHHHHHhcc-----cCCCCCc------eeECC-----ccCCCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence 689999999999999998774 3344432 23333 2334444567777666666666555445555
Q ss_pred CChhhHHHHHHHHHHHHH
Q 032789 93 TNQASFERAKKWVQELQA 110 (133)
Q Consensus 93 ~~~~s~~~~~~~~~~i~~ 110 (133)
....|.+.+..|++++.-
T Consensus 416 e~~as~q~i~~~LqrLel 433 (546)
T COG4615 416 EGKASPQLIEKWLQRLEL 433 (546)
T ss_pred ccCCChHHHHHHHHHHHH
Confidence 566789999999998843
No 378
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00036 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~ 35 (133)
.++++|++|||||||++-+..-..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 588999999999999999876543
No 379
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.29 E-value=0.0007 Score=49.10 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=38.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCccc----CceeeeEEEEE-EEECCeEEEEEEEeCCCc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIGAAFFSQT-LAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~l~d~~g~ 69 (133)
....+.++++|-||||||||++.+.......... ...|.+..... +.+... -.+.+.|+||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence 3467899999999999999999877532222111 12222222222 334332 25889999993
No 380
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.29 E-value=0.00025 Score=47.35 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.|+++|++||||||+++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999874
No 381
>PRK14532 adenylate kinase; Provisional
Probab=97.28 E-value=0.00026 Score=47.66 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+|+++|++||||||+++++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999753
No 382
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.27 E-value=0.00024 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-++|+|++|||||||++-+-.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999998754
No 383
>PRK14531 adenylate kinase; Provisional
Probab=97.27 E-value=0.00031 Score=47.31 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+.+|+++|++|+||||+++++...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998653
No 384
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00022 Score=48.06 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
.=+++.|++||||||+++.++...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999998765
No 385
>PRK13949 shikimate kinase; Provisional
Probab=97.26 E-value=0.00032 Score=46.78 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+|+++|.+|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 386
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.26 E-value=0.00028 Score=47.28 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 032789 11 AKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~ 31 (133)
.-|+++|++||||||+++++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999997
No 387
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.25 E-value=0.00039 Score=46.59 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...-+.++|.+|||||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3446889999999999999998854
No 388
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.24 E-value=0.0003 Score=47.78 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|.+.|++||||||+++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998763
No 389
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.24 E-value=0.0022 Score=46.44 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=43.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc--ccCEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR--GAAAAII 88 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~--~~~~iv~ 88 (133)
-.|++.|.+||||||+++.+....+ ..+++ .....+..+...... ..+.+.+
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~~g~----------------~~~d~----------~~~~L~~~l~~~~~~~~~~~~~av 60 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALEDLGY----------------YCVDN----------LPPSLLPKLVELLAQSGGIRKVAV 60 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHHcCC----------------eEECC----------cCHHHHHHHHHHHHhcCCCCCeEE
Confidence 3689999999999999999942211 00111 111112222111111 1345677
Q ss_pred EEECCChhhHHHHHHHHHHHHHh
Q 032789 89 VYDITNQASFERAKKWVQELQAQ 111 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~ 111 (133)
+.|+.+...+++..+.+..+.+.
T Consensus 61 ~iD~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 61 VIDVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred EEccCchhhHHHHHHHHHHHHHc
Confidence 78887766556677777777764
No 390
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.23 E-value=0.00042 Score=47.52 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...-|.++|++|||||||++.+.+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999975
No 391
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.23 E-value=0.00043 Score=38.47 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-.++.|++|+||||++..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999987753
No 392
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.22 E-value=0.00034 Score=47.41 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
=|+++|++|||||||++++...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3889999999999999999865
No 393
>PRK08233 hypothetical protein; Provisional
Probab=97.21 E-value=0.0004 Score=46.23 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-|+|.|.+|+||||+++++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56788899999999999999754
No 394
>PF13173 AAA_14: AAA domain
Probab=97.21 E-value=0.00032 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~ 35 (133)
-+++.|+.+|||||+++++.....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999987543
No 395
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.21 E-value=0.00031 Score=47.33 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+|+++|++|+||||+++++...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 396
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.21 E-value=0.0016 Score=40.01 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=56.4
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 13 LVLLG-DVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 13 i~i~G-~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
|.++| ..|+||||+...+...-.........-.+.... ....+.+.|+++.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~------~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ------FGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC------CCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence 34444 889999998877754322110112221211111 1127899999985432 23457788999999886
Q ss_pred CCChhhHHHHHHHHHHHHHhC
Q 032789 92 ITNQASFERAKKWVQELQAQG 112 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~ 112 (133)
. +..+...+..+++.+++..
T Consensus 74 ~-~~~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 74 Q-DLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred C-ChHHHHHHHHHHHHHHHcC
Confidence 4 6677888888888877654
No 397
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.21 E-value=0.00043 Score=47.44 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+...|.|.|++|||||||++.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998753
No 398
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.20 E-value=0.0015 Score=44.55 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|+++|++|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987764
No 399
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.00044 Score=50.00 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=57.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC---C-------CCC----cccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG---Q-------FIE----FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS 74 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~---~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~ 74 (133)
..++|..+|.-.=|||||...+..- + |.+ ..+..-|+++....+.+........-.|+|||.+|-.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 4679999999999999998776531 1 000 1112335555555566655556778899999998865
Q ss_pred cccccccccCEEEEEEECCChh
Q 032789 75 LAPMYYRGAAAAIIVYDITNQA 96 (133)
Q Consensus 75 ~~~~~~~~~~~iv~v~d~~~~~ 96 (133)
..-.-.-++|+.|+|++.+|-.
T Consensus 91 NMItgAaqmDgAILVVsA~dGp 112 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGP 112 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCC
Confidence 4333444567778887777643
No 400
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.19 E-value=0.00037 Score=46.63 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|+++|++||||||+++++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998753
No 401
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.18 E-value=0.00038 Score=42.97 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 032789 11 AKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~ 31 (133)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999986
No 402
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.18 E-value=0.00031 Score=46.23 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|+++|++||||||+++.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999998764
No 403
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.17 E-value=0.0004 Score=48.89 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..++++|+|++|||||+++..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998754
No 404
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.00039 Score=47.39 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
--|+++|++|||||||++.+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999875
No 405
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.17 E-value=0.00033 Score=48.18 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
||+|+|++||||||+++++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 406
>PRK02496 adk adenylate kinase; Provisional
Probab=97.17 E-value=0.00048 Score=46.27 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+++++|++||||||+++.+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
No 407
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.14 E-value=0.00047 Score=43.48 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
...+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998764
No 408
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.14 E-value=0.0039 Score=36.62 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=47.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-ccccccccCEEEEEEE
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-APMYYRGAAAAIIVYD 91 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~-~~~~~~~~~~iv~v~d 91 (133)
+++.|..|+||||++..+...-....+ +....+ .+.+.|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK----------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999888754211111 111111 7889999886543211 1456677888888887
Q ss_pred CCChhhHHHHHHH
Q 032789 92 ITNQASFERAKKW 104 (133)
Q Consensus 92 ~~~~~s~~~~~~~ 104 (133)
.+ ..+.......
T Consensus 68 ~~-~~~~~~~~~~ 79 (99)
T cd01983 68 PE-ALAVLGARRL 79 (99)
T ss_pred Cc-hhhHHHHHHH
Confidence 64 4444444443
No 409
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.14 E-value=0.00055 Score=47.89 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..+|+++|++||||||+++++...
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999998754
No 410
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.00039 Score=48.11 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-.+++|++|||||||++.+-.
T Consensus 35 VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHh
Confidence 357999999999999988754
No 411
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.13 E-value=0.00044 Score=43.51 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
--+++.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999875
No 412
>PRK10646 ADP-binding protein; Provisional
Probab=97.12 E-value=0.0031 Score=41.45 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 413
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.11 E-value=0.00058 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+|.++|+.|+||||+++++.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998864
No 414
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.11 E-value=0.00043 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~ 34 (133)
+.++|++||||||+++.+.+-.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5699999999999999998753
No 415
>PRK06762 hypothetical protein; Provisional
Probab=97.11 E-value=0.00051 Score=45.28 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-|++.|.+||||||+++.+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998754
No 416
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0016 Score=52.33 Aligned_cols=87 Identities=23% Similarity=0.255 Sum_probs=61.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC-----------C----eEE-EEEEEeCCCcccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-----------D----ATV-KFEIWDTAGQERY 72 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~~~-~~~l~d~~g~~~~ 72 (133)
+.+=++|+|.-..|||-|+..+.+........-++.-.+....+... + ..+ -+.++|+||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45668999999999999999988765544333222222222222111 0 111 3789999999999
Q ss_pred cccccccccccCEEEEEEECCCh
Q 032789 73 HSLAPMYYRGAAAAIIVYDITNQ 95 (133)
Q Consensus 73 ~~~~~~~~~~~~~iv~v~d~~~~ 95 (133)
..++.....-||..|+|+|+-..
T Consensus 554 tnlRsrgsslC~~aIlvvdImhG 576 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHG 576 (1064)
T ss_pred hhhhhccccccceEEEEeehhcc
Confidence 99999999999999999999853
No 417
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.09 E-value=0.00058 Score=45.89 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 032789 11 AKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~ 31 (133)
-.+.++|++|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368899999999999999885
No 418
>PRK06547 hypothetical protein; Provisional
Probab=97.09 E-value=0.00068 Score=45.39 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.....|+|.|.+||||||+++.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44567888899999999999999754
No 419
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.08 E-value=0.00061 Score=45.51 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+|+++|.+|+||||+++.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999999754
No 420
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.07 E-value=0.00051 Score=46.62 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 032789 13 LVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~ 32 (133)
|.|.|++|||||||++++..
T Consensus 2 IgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998864
No 421
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.07 E-value=0.00052 Score=47.70 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 032789 13 LVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~ 32 (133)
|.+.|++||||||+++.+..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 57899999999999998875
No 422
>PRK00625 shikimate kinase; Provisional
Probab=97.07 E-value=0.00064 Score=45.55 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+|+++|.+||||||+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998653
No 423
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.05 E-value=0.00082 Score=44.80 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...-|++.|.+|+||||+++.+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999988864
No 424
>PLN02200 adenylate kinase family protein
Probab=97.05 E-value=0.00089 Score=46.99 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....|+++|++||||||+++++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998875
No 425
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.05 E-value=0.00057 Score=48.55 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 032789 13 LVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~ 32 (133)
+.++|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999999986
No 426
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.04 E-value=0.0036 Score=44.71 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=43.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
-++|.|++|+||||+++.++..-..... .....+ .+.+....+ ...+.+-. .....+.......++.---++++=.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~-~iitiE-dp~E~~~~~-~~q~~v~~-~~~~~~~~~l~~~lR~~PD~i~vgE 157 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEK-NIITVE-DPVEYQIPG-INQVQVNE-KAGLTFARGLRAILRQDPDIIMVGE 157 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCC-eEEEEC-CCceecCCC-ceEEEeCC-cCCcCHHHHHHHHhccCCCEEEecc
Confidence 4899999999999999988764321111 011110 111222222 11222221 1112333444445554445666677
Q ss_pred CCChhhHHHH
Q 032789 92 ITNQASFERA 101 (133)
Q Consensus 92 ~~~~~s~~~~ 101 (133)
+.+++++..+
T Consensus 158 iR~~e~a~~~ 167 (264)
T cd01129 158 IRDAETAEIA 167 (264)
T ss_pred CCCHHHHHHH
Confidence 7777765543
No 427
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.03 E-value=0.00067 Score=43.96 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
+++.|.+||||||+++.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 689999999999999998764
No 428
>PRK13947 shikimate kinase; Provisional
Probab=97.03 E-value=0.00071 Score=44.75 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+|+++|.+||||||+.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 429
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.03 E-value=0.00072 Score=45.64 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-.++++|++|+||||+++.+.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999998864
No 430
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.02 E-value=0.0007 Score=46.62 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 431
>PRK14528 adenylate kinase; Provisional
Probab=97.01 E-value=0.00077 Score=45.57 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
-+|+++|++|+||||+++++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 432
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.01 E-value=0.0014 Score=41.44 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
--|++-|+-|+|||||++.+...
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999998864
No 433
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.01 E-value=0.00066 Score=45.30 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-|++.|.+||||||+++.+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999865
No 434
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.00064 Score=46.63 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-++++|++|||||||+|-..+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 478999999999999999875
No 435
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.001 Score=56.00 Aligned_cols=118 Identities=20% Similarity=0.182 Sum_probs=62.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeee-EEEEEEEECCeEEEEEEEeCCCcccc--------ccccc-----
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAA-FFSQTLAVNDATVKFEIWDTAGQERY--------HSLAP----- 77 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~d~~g~~~~--------~~~~~----- 77 (133)
.+++|++|+||||++..- +.+|+- +.....+.. ..+..+.. -..-.-.++||.|...- ...|.
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCc-ccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 589999999999987654 222221 111111110 00122221 12236688999883211 12222
Q ss_pred ----ccccccCEEEEEEECCCh-----h-h---HHHHHHHHHHHHHhCCCccccccccccceeehhccC
Q 032789 78 ----MYYRGAAAAIIVYDITNQ-----A-S---FERAKKWVQELQAQGIHIQSLLQRFFSCINIFLGFM 133 (133)
Q Consensus 78 ----~~~~~~~~iv~v~d~~~~-----~-s---~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~ 133 (133)
...+..+|||+..|+.+- . . ...++.-++++++ ...+-..+.....+.++..||+
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~-tL~~~~PVYl~lTk~Dll~GF~ 273 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE-TLHARLPVYLVLTKADLLPGFE 273 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hhccCCceEEEEecccccccHH
Confidence 235568999999999852 1 1 1223344555544 2344444555677888888874
No 436
>PHA00729 NTP-binding motif containing protein
Probab=97.01 E-value=0.00079 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..+|++.|++|+|||+++..+...
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998764
No 437
>PTZ00301 uridine kinase; Provisional
Probab=97.00 E-value=0.0007 Score=46.78 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 032789 11 AKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~ 31 (133)
+=|.|.|++|||||||++++.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHH
Confidence 457899999999999998764
No 438
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0029 Score=50.80 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=69.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCC------------CC--CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ------------FI--EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~ 71 (133)
+....-+++++..-.=|||||+..+.... |- .+.+.+.|++..+..+..-..++.+.++|.|||-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 34456688999988999999998877321 11 12334556666666666655678999999999999
Q ss_pred ccccccccccccCEEEEEEECCChh
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITNQA 96 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~~~ 96 (133)
|........+-+|+.+..+|+...-
T Consensus 85 f~sevssas~l~d~alvlvdvvegv 109 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGV 109 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeecccc
Confidence 9999899999999999999998753
No 439
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.98 E-value=0.00068 Score=45.07 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=16.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.....-+++.|++|+|||++++++..
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33456789999999999999998764
No 440
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.97 E-value=0.00081 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 441
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.97 E-value=0.00085 Score=46.27 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+|+|+|++|+||||+++++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 442
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.97 E-value=0.00081 Score=46.27 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 443
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.97 E-value=0.00074 Score=43.72 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.|+++|.+|+||||+++.+...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998743
No 444
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.97 E-value=0.001 Score=47.33 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.+....+++.|++|+||||+++.+..
T Consensus 39 ~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999988865
No 445
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.97 E-value=0.00076 Score=45.51 Aligned_cols=22 Identities=50% Similarity=0.632 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998775
No 446
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.00086 Score=45.93 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 447
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0036 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-+|+|+|+.|||||||+.-+++.
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcC
Confidence 458999999999999999999875
No 448
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.96 E-value=0.00086 Score=45.99 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 449
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.95 E-value=0.00085 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999865
No 450
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.00079 Score=46.15 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999875
No 451
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.95 E-value=0.0044 Score=45.97 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+.+|++.|++|+||||+++.++..
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcc
Confidence 578999999999999999999865
No 452
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.95 E-value=0.0009 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.387 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 453
>PRK13695 putative NTPase; Provisional
Probab=96.95 E-value=0.00095 Score=44.46 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.||++.|++|+||||+++.+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 454
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.00088 Score=46.71 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 455
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.00091 Score=46.17 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 456
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.93 E-value=0.00087 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+|+|+|.+|+|||||++.|...
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 457
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.00085 Score=44.80 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 032789 11 AKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~ 31 (133)
.+|++.|-||+||||+++++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 379999999999999999997
No 458
>PF05729 NACHT: NACHT domain
Probab=96.93 E-value=0.00089 Score=43.55 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
++|.|++|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998864
No 459
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.92 E-value=0.00092 Score=46.12 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998765
No 460
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.92 E-value=0.00081 Score=41.38 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|.+.|++|+|||++++.|...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999997753
No 461
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.91 E-value=0.0011 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
....|.++|..|+|||||+++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999998754
No 462
>PRK14529 adenylate kinase; Provisional
Probab=96.91 E-value=0.001 Score=46.41 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+|+++|++||||||+++++...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~ 23 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKK 23 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999888753
No 463
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.91 E-value=0.001 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 464
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.91 E-value=0.001 Score=45.69 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998875
No 465
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.91 E-value=0.001 Score=46.08 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
.+.++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999998764
No 466
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.91 E-value=0.001 Score=43.39 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
++++|.+|+||||+++.+...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999988764
No 467
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.001 Score=45.67 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999875
No 468
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.90 E-value=0.003 Score=40.65 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=52.8
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEECCC
Q 032789 15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN 94 (133)
Q Consensus 15 i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~ 94 (133)
.-|..|+|||++...+...-... .....-.+... ......+.+.++|+++.. .......+..+|.++++.+. +
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~-~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~-~ 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKL-GKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTP-E 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCC-C
Confidence 44689999999876665321111 11111111110 001122688999999743 23335678999999999986 4
Q ss_pred hhhHHHHHHHHHHHHHh
Q 032789 95 QASFERAKKWVQELQAQ 111 (133)
Q Consensus 95 ~~s~~~~~~~~~~i~~~ 111 (133)
..++......++.+.+.
T Consensus 78 ~~s~~~~~~~l~~l~~~ 94 (139)
T cd02038 78 PTSITDAYALIKKLAKQ 94 (139)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 56666666666666544
No 469
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.00091 Score=46.86 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999976
No 470
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.90 E-value=0.0011 Score=45.27 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 471
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.89 E-value=0.001 Score=44.75 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|.|.|.+||||||+++.+...
T Consensus 2 i~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
No 472
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.89 E-value=0.0011 Score=43.69 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...|+++|.+||||||+++.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999999888753
No 473
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.0011 Score=45.84 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 474
>PRK07429 phosphoribulokinase; Provisional
Probab=96.88 E-value=0.0015 Score=48.14 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.+-|.|.|++||||||+++.+...
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhH
Confidence 46789999999999999999988743
No 475
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.88 E-value=0.0011 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 476
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.88 E-value=0.004 Score=45.76 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+.+|++.|.+|+||||+++.++..
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 477
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.88 E-value=0.0011 Score=43.82 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|.+|+||||+++++...
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 478
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.88 E-value=0.0015 Score=44.26 Aligned_cols=23 Identities=30% Similarity=0.262 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999998863
No 479
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.87 E-value=0.0011 Score=44.54 Aligned_cols=22 Identities=41% Similarity=0.758 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-|+++|+++|||+||+++|+..
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999863
No 480
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.87 E-value=0.0011 Score=46.07 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999875
No 481
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.87 E-value=0.0011 Score=44.63 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 032789 13 LVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~ 32 (133)
|++.|.+||||||+++++..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 482
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.001 Score=46.49 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 483
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.86 E-value=0.0011 Score=45.55 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 484
>PRK14526 adenylate kinase; Provisional
Probab=96.86 E-value=0.0012 Score=45.64 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
+|+++|++||||||+++.+..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998874
No 485
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.86 E-value=0.001 Score=46.31 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999875
No 486
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.86 E-value=0.0014 Score=45.66 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....-|.+.|++|+|||||++.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999999999998875
No 487
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.86 E-value=0.0011 Score=45.78 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999875
No 488
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.86 E-value=0.0011 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+|+++|.+|+|||||++.+...
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~ 185 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAV 185 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999998753
No 489
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.86 E-value=0.0014 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
.+.++|++|+|||||++.+.+..
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998753
No 490
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0012 Score=44.09 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5779999999999999999865
No 491
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.004 Score=47.12 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=68.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC---CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 13 LVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
|+-+|.=-=|||||++.+.+.... ++.......+. .....+.....+.+.|.||++++-...-.-+...|..++|
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDl--g~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDL--GFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhcCceEee--eeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 566788888999999999875332 22223333333 2222333345899999999999877666677789999999
Q ss_pred EECCChhhHHHHHHHHHHHHH-hCCCccccccccccce
Q 032789 90 YDITNQASFERAKKWVQELQA-QGIHIQSLLQRFFSCI 126 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~l~~~~~~~ 126 (133)
+|.++.-..+..+ -+..+.- ..++..+++..++.+.
T Consensus 81 V~~deGl~~qtgE-hL~iLdllgi~~giivltk~D~~d 117 (447)
T COG3276 81 VAADEGLMAQTGE-HLLILDLLGIKNGIIVLTKADRVD 117 (447)
T ss_pred EeCccCcchhhHH-HHHHHHhcCCCceEEEEecccccc
Confidence 9986532222221 2222211 1345567777777664
No 492
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.85 E-value=0.0011 Score=45.80 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999875
No 493
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0012 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999875
No 494
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.0012 Score=46.85 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999875
No 495
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.85 E-value=0.0011 Score=45.53 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999875
No 496
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.84 E-value=0.0012 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+++.|++|||||||.+.++.-
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 5789999999999999999864
No 497
>PRK04040 adenylate kinase; Provisional
Probab=96.84 E-value=0.0013 Score=44.69 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..|++.|.+||||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36899999999999999988654
No 498
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.84 E-value=0.0012 Score=44.84 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|.+.|.+||||||+++.+...
T Consensus 2 i~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999775
No 499
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.84 E-value=0.0012 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 500
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.84 E-value=0.0013 Score=43.33 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
+.++|.+|+||||+++++...
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999998863
Done!