Query 032789
Match_columns 133
No_of_seqs 104 out of 1046
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:21:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4E-29 1.4E-33 171.6 12.1 120 6-125 9-129 (216)
2 3tw8_B RAS-related protein RAB 99.9 2E-25 6.9E-30 147.4 15.4 121 4-124 3-123 (181)
3 2efe_B Small GTP-binding prote 99.9 2.7E-25 9.3E-30 147.0 15.0 123 1-123 3-126 (181)
4 3q3j_B RHO-related GTP-binding 99.9 4.3E-25 1.5E-29 150.8 14.3 118 6-124 23-141 (214)
5 1r2q_A RAS-related protein RAB 99.9 1.4E-24 4.7E-29 141.9 14.9 119 6-124 2-123 (170)
6 1m7b_A RND3/RHOE small GTP-bin 99.9 1.1E-24 3.7E-29 145.1 14.6 117 7-124 4-121 (184)
7 2hup_A RAS-related protein RAB 99.9 3.2E-25 1.1E-29 150.0 12.1 119 5-123 24-143 (201)
8 1gwn_A RHO-related GTP-binding 99.9 9.1E-25 3.1E-29 148.4 14.4 118 6-124 24-142 (205)
9 2fu5_C RAS-related protein RAB 99.9 4.8E-25 1.6E-29 146.3 12.2 117 7-123 5-122 (183)
10 1z2a_A RAS-related protein RAB 99.9 1E-24 3.5E-29 142.4 13.5 116 8-123 3-118 (168)
11 1z08_A RAS-related protein RAB 99.9 1.4E-24 4.9E-29 142.1 13.9 116 7-122 3-119 (170)
12 2ew1_A RAS-related protein RAB 99.9 1.5E-24 5.2E-29 147.0 14.4 117 6-122 22-139 (201)
13 1z0j_A RAB-22, RAS-related pro 99.9 3.6E-24 1.2E-28 140.0 15.6 115 7-121 3-118 (170)
14 2bcg_Y Protein YP2, GTP-bindin 99.9 3.5E-24 1.2E-28 144.9 15.8 117 6-122 4-121 (206)
15 1ek0_A Protein (GTP-binding pr 99.9 2.8E-24 9.5E-29 140.4 14.8 113 9-121 2-115 (170)
16 3reg_A RHO-like small GTPase; 99.9 3.6E-24 1.2E-28 143.6 15.6 118 6-124 19-137 (194)
17 2gf9_A RAS-related protein RAB 99.9 5.3E-24 1.8E-28 142.2 16.3 117 6-122 18-135 (189)
18 1wms_A RAB-9, RAB9, RAS-relate 99.9 2.2E-24 7.6E-29 142.1 14.2 119 5-123 2-125 (177)
19 2a5j_A RAS-related protein RAB 99.9 2.4E-24 8.3E-29 144.2 14.5 118 5-122 16-134 (191)
20 3t5g_A GTP-binding protein RHE 99.9 6.4E-24 2.2E-28 140.6 16.0 117 6-123 2-120 (181)
21 2bme_A RAB4A, RAS-related prot 99.9 3.3E-24 1.1E-28 142.4 14.6 119 6-124 6-125 (186)
22 2atx_A Small GTP binding prote 99.9 2.9E-24 9.9E-29 143.9 14.4 118 6-124 14-132 (194)
23 2j0v_A RAC-like GTP-binding pr 99.9 3E-24 1E-28 145.8 14.4 117 7-124 6-123 (212)
24 2fg5_A RAB-22B, RAS-related pr 99.9 3.4E-24 1.2E-28 143.7 14.3 118 5-122 18-136 (192)
25 3c5c_A RAS-like protein 12; GD 99.9 3.9E-24 1.3E-28 143.1 14.5 116 7-124 18-137 (187)
26 2q3h_A RAS homolog gene family 99.9 4.2E-24 1.4E-28 143.9 14.3 118 6-124 16-134 (201)
27 3tkl_A RAS-related protein RAB 99.9 5.5E-24 1.9E-28 142.4 14.7 117 7-123 13-130 (196)
28 1z06_A RAS-related protein RAB 99.9 2.6E-24 8.8E-29 143.8 13.0 118 6-123 16-136 (189)
29 1z0f_A RAB14, member RAS oncog 99.9 4E-24 1.4E-28 140.9 13.7 118 6-123 11-129 (179)
30 2g6b_A RAS-related protein RAB 99.9 9.4E-24 3.2E-28 139.5 15.3 119 4-122 4-124 (180)
31 3cpj_B GTP-binding protein YPT 99.9 5.6E-24 1.9E-28 145.8 14.7 116 7-122 10-126 (223)
32 1zbd_A Rabphilin-3A; G protein 99.9 7.5E-24 2.6E-28 142.8 15.1 117 7-123 5-122 (203)
33 1vg8_A RAS-related protein RAB 99.9 3.8E-24 1.3E-28 144.4 13.7 118 6-123 4-126 (207)
34 2il1_A RAB12; G-protein, GDP, 99.9 1.6E-24 5.5E-29 145.4 11.4 120 4-123 20-140 (192)
35 1x3s_A RAS-related protein RAB 99.9 4.3E-24 1.5E-28 142.7 13.4 117 6-122 11-129 (195)
36 2oil_A CATX-8, RAS-related pro 99.9 6.4E-24 2.2E-28 142.1 14.2 117 6-122 21-138 (193)
37 2y8e_A RAB-protein 6, GH09086P 99.9 6.2E-24 2.1E-28 140.0 13.7 116 7-122 11-127 (179)
38 1g16_A RAS-related protein SEC 99.9 3.6E-24 1.2E-28 140.0 12.4 115 9-123 2-117 (170)
39 3bc1_A RAS-related protein RAB 99.9 6.4E-24 2.2E-28 141.5 13.7 118 6-123 7-136 (195)
40 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.5E-23 5.1E-28 139.0 15.3 115 8-123 3-118 (186)
41 1ky3_A GTP-binding protein YPT 99.9 2.6E-24 8.8E-29 142.1 11.6 118 6-123 4-127 (182)
42 3kkq_A RAS-related protein M-R 99.9 7.8E-24 2.7E-28 140.4 14.0 117 6-123 14-132 (183)
43 2fn4_A P23, RAS-related protei 99.9 1.1E-23 3.7E-28 139.0 14.5 119 4-123 3-123 (181)
44 2hxs_A RAB-26, RAS-related pro 99.9 2.3E-24 7.8E-29 142.2 10.9 105 7-111 3-108 (178)
45 3gj0_A GTP-binding nuclear pro 99.9 1.9E-24 6.3E-29 147.9 10.7 120 5-124 10-129 (221)
46 2p5s_A RAS and EF-hand domain 99.9 3.4E-24 1.2E-28 144.4 11.3 118 6-123 24-142 (199)
47 3ihw_A Centg3; RAS, centaurin, 99.9 1.1E-23 3.7E-28 140.7 13.4 113 5-124 15-129 (184)
48 2gco_A H9, RHO-related GTP-bin 99.9 2.2E-23 7.5E-28 140.7 14.7 116 7-123 22-138 (201)
49 2o52_A RAS-related protein RAB 99.9 7.4E-24 2.5E-28 143.1 12.3 117 7-123 22-139 (200)
50 4gzl_A RAS-related C3 botulinu 99.9 1.8E-23 6.3E-28 141.6 14.2 118 5-123 25-143 (204)
51 3cph_A RAS-related protein SEC 99.9 1.7E-23 5.9E-28 141.8 14.1 117 7-123 17-134 (213)
52 3oes_A GTPase rhebl1; small GT 99.9 1.3E-23 4.4E-28 141.8 13.3 117 6-123 20-138 (201)
53 3clv_A RAB5 protein, putative; 99.9 2E-23 6.7E-28 139.9 14.0 116 7-123 4-156 (208)
54 2j1l_A RHO-related GTP-binding 99.9 1.1E-23 3.7E-28 143.7 12.9 117 7-124 31-148 (214)
55 3dz8_A RAS-related protein RAB 99.9 9E-25 3.1E-29 146.3 6.9 118 6-123 19-137 (191)
56 2fv8_A H6, RHO-related GTP-bin 99.9 4.3E-23 1.5E-27 139.9 14.7 115 8-123 23-138 (207)
57 3cbq_A GTP-binding protein REM 99.9 4.9E-24 1.7E-28 143.7 9.8 119 6-124 19-140 (195)
58 1c1y_A RAS-related protein RAP 99.9 2.4E-23 8.1E-28 135.8 12.4 113 9-122 2-116 (167)
59 3q85_A GTP-binding protein REM 99.9 2.3E-23 7.8E-28 136.3 12.3 115 10-124 2-119 (169)
60 3bwd_D RAC-like GTP-binding pr 99.9 5E-24 1.7E-28 141.0 9.0 116 7-123 5-121 (182)
61 3l0i_B RAS-related protein RAB 99.9 2E-24 6.8E-29 145.6 6.8 117 7-123 30-147 (199)
62 2iwr_A Centaurin gamma 1; ANK 99.9 4.9E-23 1.7E-27 136.0 13.3 110 8-124 5-118 (178)
63 2yc2_C IFT27, small RAB-relate 99.9 5.6E-24 1.9E-28 143.4 8.8 116 8-123 18-141 (208)
64 2a9k_A RAS-related protein RAL 99.9 4E-23 1.4E-27 136.9 12.7 117 6-123 14-132 (187)
65 2bov_A RAla, RAS-related prote 99.9 4.9E-23 1.7E-27 138.7 13.2 116 7-123 11-128 (206)
66 2f7s_A C25KG, RAS-related prot 99.9 6.4E-24 2.2E-28 144.6 8.7 117 6-122 21-149 (217)
67 1u8z_A RAS-related protein RAL 99.9 5.4E-23 1.9E-27 133.9 12.6 114 9-123 3-118 (168)
68 1kao_A RAP2A; GTP-binding prot 99.9 9.9E-23 3.4E-27 132.5 13.4 114 9-123 2-117 (167)
69 3t1o_A Gliding protein MGLA; G 99.9 8E-24 2.7E-28 141.4 7.3 119 5-124 9-145 (198)
70 4bas_A ADP-ribosylation factor 99.9 1.4E-22 4.8E-27 135.9 13.4 114 5-122 12-135 (199)
71 2nzj_A GTP-binding protein REM 99.9 1E-22 3.5E-27 133.8 12.3 114 9-123 3-120 (175)
72 2atv_A RERG, RAS-like estrogen 99.9 1E-22 3.5E-27 136.8 12.4 115 7-123 25-141 (196)
73 3con_A GTPase NRAS; structural 99.9 4E-22 1.4E-26 132.9 14.8 115 7-122 18-134 (190)
74 2erx_A GTP-binding protein DI- 99.9 1.3E-22 4.4E-27 132.7 11.7 114 9-123 2-118 (172)
75 2zej_A Dardarin, leucine-rich 99.9 1.6E-23 5.5E-28 139.6 7.3 115 10-124 2-122 (184)
76 2ce2_X GTPase HRAS; signaling 99.9 2.4E-22 8.4E-27 130.4 12.7 113 9-122 2-116 (166)
77 3q72_A GTP-binding protein RAD 99.9 2E-22 6.8E-27 131.5 12.1 112 10-123 2-115 (166)
78 4dsu_A GTPase KRAS, isoform 2B 99.9 4.3E-22 1.5E-26 132.2 13.8 115 8-123 2-118 (189)
79 2gf0_A GTP-binding protein DI- 99.9 1.2E-22 4.2E-27 136.2 10.7 117 6-123 4-123 (199)
80 4djt_A GTP-binding nuclear pro 99.9 7.7E-23 2.6E-27 139.3 9.7 118 5-122 6-125 (218)
81 1ksh_A ARF-like protein 2; sma 99.9 3.9E-22 1.3E-26 132.6 12.8 111 8-123 16-128 (186)
82 1zd9_A ADP-ribosylation factor 99.9 3.1E-22 1E-26 133.7 12.3 113 7-123 19-133 (188)
83 2h57_A ADP-ribosylation factor 99.9 3.9E-22 1.3E-26 133.2 11.8 112 7-122 18-134 (190)
84 2h17_A ADP-ribosylation factor 99.9 2.6E-22 9E-27 133.2 10.8 113 6-123 17-131 (181)
85 1zj6_A ADP-ribosylation factor 99.9 2.2E-22 7.6E-27 134.1 9.9 111 8-123 14-126 (187)
86 1upt_A ARL1, ADP-ribosylation 99.9 1.3E-21 4.4E-26 128.0 12.5 111 8-123 5-117 (171)
87 2g3y_A GTP-binding protein GEM 99.9 1.1E-21 3.6E-26 134.2 12.5 117 7-124 34-155 (211)
88 1m2o_B GTP-binding protein SAR 99.9 2.6E-21 8.8E-26 129.7 13.7 111 8-123 21-133 (190)
89 1r8s_A ADP-ribosylation factor 99.9 5.3E-22 1.8E-26 129.2 10.0 108 11-123 1-110 (164)
90 2f9l_A RAB11B, member RAS onco 99.9 3.8E-21 1.3E-25 129.5 14.5 114 8-121 3-117 (199)
91 1f6b_A SAR1; gtpases, N-termin 99.9 8.2E-22 2.8E-26 133.0 10.9 111 8-123 23-135 (198)
92 2b6h_A ADP-ribosylation factor 99.9 7.2E-22 2.5E-26 132.6 10.1 112 7-123 26-139 (192)
93 3llu_A RAS-related GTP-binding 99.9 5.4E-22 1.9E-26 133.4 9.4 118 5-125 15-140 (196)
94 2cjw_A GTP-binding protein GEM 99.9 3.5E-21 1.2E-25 129.3 13.2 116 8-124 4-124 (192)
95 1oix_A RAS-related protein RAB 99.9 8.5E-21 2.9E-25 127.3 14.9 115 7-121 26-141 (191)
96 2wkq_A NPH1-1, RAS-related C3 99.9 5.6E-21 1.9E-25 137.1 14.7 115 9-124 154-269 (332)
97 3th5_A RAS-related C3 botulinu 99.8 1E-23 3.5E-28 142.5 0.0 116 7-123 27-143 (204)
98 1fzq_A ADP-ribosylation factor 99.9 8.6E-22 2.9E-26 131.0 9.2 111 8-123 14-126 (181)
99 1moz_A ARL1, ADP-ribosylation 99.9 8.7E-22 3E-26 130.4 8.0 111 8-123 16-128 (183)
100 2x77_A ADP-ribosylation factor 99.9 1.9E-21 6.4E-26 129.7 9.6 111 8-123 20-132 (189)
101 3r7w_A Gtpase1, GTP-binding pr 99.8 1.3E-20 4.5E-25 135.2 11.5 113 9-124 2-125 (307)
102 3r7w_B Gtpase2, GTP-binding pr 99.8 9.7E-21 3.3E-25 136.5 7.8 108 12-124 1-116 (331)
103 2fh5_B SR-beta, signal recogni 99.8 4.1E-20 1.4E-24 125.4 10.3 114 7-123 4-124 (214)
104 2lkc_A Translation initiation 99.8 1.8E-19 6.1E-24 118.6 11.0 87 7-95 5-91 (178)
105 3c5h_A Glucocorticoid receptor 99.8 9.2E-21 3.2E-25 132.7 4.6 119 6-124 15-208 (255)
106 3lvq_E ARF-GAP with SH3 domain 99.8 3.3E-19 1.1E-23 134.9 12.2 112 8-124 320-433 (497)
107 3o47_A ADP-ribosylation factor 99.8 1.1E-19 3.8E-24 131.5 8.4 110 9-123 164-275 (329)
108 2ged_A SR-beta, signal recogni 99.8 1.4E-19 5E-24 120.8 5.9 107 7-122 45-164 (193)
109 1nrj_B SR-beta, signal recogni 99.8 1.2E-19 4.1E-24 123.4 5.1 107 7-122 9-128 (218)
110 2wji_A Ferrous iron transport 99.8 3.8E-18 1.3E-22 111.7 11.1 108 9-123 2-117 (165)
111 2gj8_A MNME, tRNA modification 99.8 2.2E-18 7.6E-23 113.7 9.3 112 9-123 3-124 (172)
112 2qu8_A Putative nucleolar GTP- 99.8 2.6E-18 9E-23 117.9 9.3 114 8-123 27-151 (228)
113 2wjg_A FEOB, ferrous iron tran 99.8 4.5E-18 1.5E-22 112.9 10.0 109 6-121 3-119 (188)
114 3dpu_A RAB family protein; roc 99.8 3.8E-19 1.3E-23 135.9 4.8 115 7-124 38-160 (535)
115 2dyk_A GTP-binding protein; GT 99.7 3E-17 1E-21 106.1 10.3 86 11-98 2-95 (161)
116 1svi_A GTP-binding protein YSX 99.7 5.4E-18 1.8E-22 113.2 6.9 115 6-124 19-146 (195)
117 3a1s_A Iron(II) transport prot 99.7 4.4E-17 1.5E-21 114.3 11.7 107 8-121 3-117 (258)
118 3iby_A Ferrous iron transport 99.7 3.6E-17 1.2E-21 114.6 8.5 94 11-106 2-107 (256)
119 3iev_A GTP-binding protein ERA 99.7 1.6E-16 5.4E-21 114.0 11.0 119 5-124 5-134 (308)
120 3i8s_A Ferrous iron transport 99.7 8.5E-17 2.9E-21 113.7 9.3 110 9-123 2-123 (274)
121 1wf3_A GTP-binding protein; GT 99.7 2.9E-16 9.9E-21 112.4 11.7 111 8-122 5-125 (301)
122 2cxx_A Probable GTP-binding pr 99.7 8.2E-18 2.8E-22 111.6 3.0 90 11-106 2-104 (190)
123 3k53_A Ferrous iron transport 99.7 3.2E-16 1.1E-20 110.3 10.4 110 9-123 2-120 (271)
124 2xtp_A GTPase IMAP family memb 99.7 8.6E-16 2.9E-20 107.3 12.3 101 6-108 18-132 (260)
125 3def_A T7I23.11 protein; chlor 99.7 5.2E-16 1.8E-20 108.8 10.5 102 8-112 34-146 (262)
126 3lxx_A GTPase IMAP family memb 99.7 4.5E-16 1.5E-20 107.6 9.1 89 6-96 25-126 (239)
127 3pqc_A Probable GTP-binding pr 99.7 3.3E-16 1.1E-20 104.1 7.8 99 6-108 19-132 (195)
128 3b1v_A Ferrous iron uptake tra 99.7 2.2E-16 7.4E-21 111.6 7.2 105 9-121 2-114 (272)
129 4dhe_A Probable GTP-binding pr 99.6 7.3E-17 2.5E-21 109.9 4.4 118 6-124 25-156 (223)
130 3gee_A MNME, tRNA modification 99.6 4.5E-16 1.5E-20 117.4 8.1 111 9-122 232-351 (476)
131 2hjg_A GTP-binding protein ENG 99.6 2.2E-16 7.4E-21 118.0 4.9 114 8-124 173-298 (436)
132 3lxw_A GTPase IMAP family memb 99.6 1.6E-15 5.5E-20 105.6 7.8 86 7-94 18-117 (247)
133 1mky_A Probable GTP-binding pr 99.6 2.5E-15 8.5E-20 112.4 9.2 87 11-99 2-98 (439)
134 1h65_A Chloroplast outer envel 99.6 1.9E-15 6.4E-20 106.4 7.3 102 9-112 38-149 (270)
135 3qq5_A Small GTP-binding prote 99.6 1E-15 3.4E-20 114.0 5.7 115 6-124 30-152 (423)
136 2e87_A Hypothetical protein PH 99.6 1.7E-14 5.9E-19 105.2 11.2 112 8-121 165-287 (357)
137 3sjy_A Translation initiation 99.6 2.7E-14 9.3E-19 105.7 11.8 117 5-125 3-142 (403)
138 3j2k_7 ERF3, eukaryotic polype 99.6 1.9E-14 6.6E-19 107.7 10.3 117 6-124 13-167 (439)
139 2hjg_A GTP-binding protein ENG 99.6 1.2E-15 4E-20 114.1 3.2 109 10-122 3-119 (436)
140 1jny_A EF-1-alpha, elongation 99.5 3.3E-15 1.1E-19 111.6 5.0 115 8-125 4-157 (435)
141 4dcu_A GTP-binding protein ENG 99.5 1.3E-15 4.5E-20 114.3 2.6 113 6-122 19-139 (456)
142 4fid_A G protein alpha subunit 99.5 4.3E-14 1.5E-18 102.4 9.9 67 57-123 159-237 (340)
143 1lnz_A SPO0B-associated GTP-bi 99.5 5.7E-15 1.9E-19 107.3 5.2 109 11-121 159-281 (342)
144 3tr5_A RF-3, peptide chain rel 99.5 2.9E-15 9.9E-20 114.3 3.7 114 8-124 11-146 (528)
145 3t5d_A Septin-7; GTP-binding p 99.5 1.8E-14 6.1E-19 101.6 7.5 116 7-123 5-155 (274)
146 3p26_A Elongation factor 1 alp 99.5 2.4E-14 8.1E-19 108.3 8.6 118 8-125 31-184 (483)
147 3geh_A MNME, tRNA modification 99.5 7.7E-15 2.6E-19 110.4 5.6 98 9-109 223-329 (462)
148 2qtf_A Protein HFLX, GTP-bindi 99.5 7.3E-14 2.5E-18 102.3 10.3 108 11-121 179-299 (364)
149 3izy_P Translation initiation 99.5 8.4E-16 2.9E-20 117.3 -0.2 114 9-124 3-116 (537)
150 1wb1_A Translation elongation 99.5 5.4E-14 1.9E-18 106.3 9.4 112 7-124 16-137 (482)
151 1xzp_A Probable tRNA modificat 99.5 1.2E-14 4E-19 109.9 5.0 91 10-102 243-343 (482)
152 1d2e_A Elongation factor TU (E 99.5 3.7E-14 1.3E-18 104.8 7.4 116 9-125 2-132 (397)
153 2c78_A Elongation factor TU-A; 99.5 2.3E-14 7.9E-19 106.1 6.3 118 7-125 8-141 (405)
154 4dcu_A GTP-binding protein ENG 99.5 1.7E-14 5.9E-19 108.3 5.6 115 7-124 192-318 (456)
155 1zun_B Sulfate adenylate trans 99.5 9.2E-14 3.2E-18 103.8 9.5 117 8-125 22-170 (434)
156 2ywe_A GTP-binding protein LEP 99.5 5.1E-14 1.7E-18 108.7 8.3 117 7-124 3-137 (600)
157 3cb4_D GTP-binding protein LEP 99.5 3.2E-14 1.1E-18 109.9 6.8 115 9-124 3-135 (599)
158 2xex_A Elongation factor G; GT 99.5 1E-13 3.6E-18 108.7 9.5 122 1-125 1-140 (693)
159 1f60_A Elongation factor EEF1A 99.5 3.7E-14 1.3E-18 106.6 6.2 117 7-125 4-158 (458)
160 1s0u_A EIF-2-gamma, translatio 99.5 3.7E-13 1.3E-17 99.7 11.2 115 7-125 5-148 (408)
161 1kk1_A EIF2gamma; initiation o 99.5 3.3E-13 1.1E-17 100.1 10.6 117 5-125 5-150 (410)
162 1dar_A EF-G, elongation factor 99.5 2.2E-13 7.5E-18 106.9 9.9 118 5-125 7-142 (691)
163 1ega_A Protein (GTP-binding pr 99.5 5.9E-13 2E-17 95.1 11.0 107 8-120 6-122 (301)
164 1g7s_A Translation initiation 99.5 1.3E-13 4.5E-18 106.4 7.9 113 8-124 3-134 (594)
165 2qag_A Septin-2, protein NEDD5 99.5 3.2E-14 1.1E-18 104.0 4.3 112 8-122 35-182 (361)
166 1zo1_I IF2, translation initia 99.5 9.4E-15 3.2E-19 110.7 1.4 86 8-95 2-87 (501)
167 1n0u_A EF-2, elongation factor 99.4 2.8E-13 9.7E-18 108.2 9.2 103 7-109 16-148 (842)
168 3ohm_A Guanine nucleotide-bind 99.4 1.6E-12 5.5E-17 93.8 12.2 71 51-123 161-243 (327)
169 2h5e_A Peptide chain release f 99.4 1.3E-13 4.3E-18 105.4 6.5 117 8-125 11-147 (529)
170 1r5b_A Eukaryotic peptide chai 99.4 2.4E-13 8.2E-18 102.4 7.8 115 8-124 41-193 (467)
171 1mky_A Probable GTP-binding pr 99.4 4.2E-13 1.4E-17 100.3 9.0 113 9-124 179-304 (439)
172 2rdo_7 EF-G, elongation factor 99.4 9.2E-13 3.2E-17 103.5 11.1 124 1-125 1-147 (704)
173 2elf_A Protein translation elo 99.4 1.3E-13 4.5E-18 101.1 5.2 101 12-124 23-125 (370)
174 3izq_1 HBS1P, elongation facto 99.4 3.8E-13 1.3E-17 104.3 7.9 87 7-95 164-281 (611)
175 2aka_B Dynamin-1; fusion prote 99.4 1.6E-13 5.6E-18 97.2 5.3 118 7-124 23-204 (299)
176 2qpt_A EH domain-containing pr 99.4 9.6E-14 3.3E-18 106.4 3.9 118 8-125 63-231 (550)
177 1jal_A YCHF protein; nucleotid 99.4 8E-13 2.7E-17 96.6 7.9 85 10-94 2-108 (363)
178 1wxq_A GTP-binding protein; st 99.4 2E-12 6.9E-17 95.6 10.1 85 11-95 1-114 (397)
179 3mca_A HBS1, elongation factor 99.4 7.4E-14 2.5E-18 107.9 1.9 117 7-125 174-328 (592)
180 1pui_A ENGB, probable GTP-bind 99.4 5.3E-13 1.8E-17 89.9 5.3 95 8-105 24-133 (210)
181 3avx_A Elongation factor TS, e 99.4 4.2E-13 1.4E-17 109.3 5.5 118 7-125 293-425 (1289)
182 2j69_A Bacterial dynamin-like 99.4 1.9E-12 6.6E-17 101.6 9.1 117 9-125 68-243 (695)
183 2ohf_A Protein OLA1, GTP-bindi 99.4 5E-13 1.7E-17 98.6 4.8 91 9-99 21-133 (396)
184 1jwy_B Dynamin A GTPase domain 99.3 1.3E-12 4.4E-17 93.3 4.6 28 8-35 22-49 (315)
185 2dy1_A Elongation factor G; tr 99.3 4.7E-12 1.6E-16 99.0 7.2 113 8-123 7-137 (665)
186 3t34_A Dynamin-related protein 99.3 4.7E-12 1.6E-16 92.3 5.7 116 9-124 33-215 (360)
187 1azs_C GS-alpha; complex (lyas 99.2 7.8E-11 2.7E-15 87.1 10.1 78 42-123 204-293 (402)
188 4a9a_A Ribosome-interacting GT 99.2 7.3E-11 2.5E-15 86.6 8.9 95 10-106 72-174 (376)
189 2qag_C Septin-7; cell cycle, c 99.2 6.7E-11 2.3E-15 88.0 8.3 113 7-122 28-175 (418)
190 2dby_A GTP-binding protein; GD 99.2 1E-10 3.5E-15 85.7 8.6 78 11-94 2-111 (368)
191 1cip_A Protein (guanine nucleo 99.2 1.7E-10 5.9E-15 84.1 9.3 79 41-123 179-269 (353)
192 2xtz_A Guanine nucleotide-bind 99.1 1.2E-10 4.2E-15 84.9 7.9 68 57-124 181-260 (354)
193 1zcb_A G alpha I/13; GTP-bindi 99.1 3.3E-10 1.1E-14 82.8 9.4 79 41-123 187-277 (362)
194 2qnr_A Septin-2, protein NEDD5 99.1 2.4E-11 8.3E-16 86.8 3.3 63 7-69 15-86 (301)
195 3vqt_A RF-3, peptide chain rel 99.1 2.8E-10 9.5E-15 87.3 9.0 114 9-125 30-165 (548)
196 2x2e_A Dynamin-1; nitration, h 99.1 3.1E-11 1.1E-15 87.9 3.4 29 8-36 29-57 (353)
197 4fn5_A EF-G 1, elongation fact 99.1 5E-10 1.7E-14 88.2 9.1 123 1-124 4-149 (709)
198 1udx_A The GTP-binding protein 99.1 4.4E-10 1.5E-14 83.5 7.6 97 12-111 159-263 (416)
199 1u0l_A Probable GTPase ENGC; p 99.0 6.6E-11 2.3E-15 84.5 0.6 90 25-122 32-123 (301)
200 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2.7E-09 9.2E-14 78.8 6.7 86 9-94 19-127 (392)
201 3j25_A Tetracycline resistance 98.8 1.1E-09 3.7E-14 85.4 0.4 113 11-124 3-131 (638)
202 1puj_A YLQF, conserved hypothe 98.7 3.5E-08 1.2E-12 69.9 5.6 59 8-70 118-176 (282)
203 3cnl_A YLQF, putative uncharac 98.7 1.1E-08 3.6E-13 71.8 2.9 57 11-71 100-156 (262)
204 3zvr_A Dynamin-1; hydrolase, D 98.6 2E-07 6.9E-12 73.8 8.4 117 8-125 49-230 (772)
205 3p32_A Probable GTPase RV1496/ 98.6 8.7E-09 3E-13 75.0 0.6 25 8-32 77-101 (355)
206 2wsm_A Hydrogenase expression/ 98.5 1E-07 3.6E-12 64.3 3.8 25 9-33 29-53 (221)
207 2www_A Methylmalonic aciduria 98.4 2.2E-07 7.4E-12 67.6 4.5 24 9-32 73-96 (349)
208 2hf9_A Probable hydrogenase ni 98.3 1.6E-08 5.4E-13 68.6 -3.0 38 9-46 37-74 (226)
209 1bif_A 6-phosphofructo-2-kinas 98.3 1.3E-08 4.3E-13 76.7 -4.8 103 8-112 37-149 (469)
210 3h2y_A GTPase family protein; 98.3 1.6E-06 5.4E-11 63.5 6.1 56 11-69 161-221 (368)
211 3ec1_A YQEH GTPase; atnos1, at 98.2 1.7E-06 5.8E-11 63.3 6.0 55 11-70 163-223 (369)
212 1yrb_A ATP(GTP)binding protein 98.2 2.3E-06 7.9E-11 59.1 6.3 23 9-31 13-35 (262)
213 2p67_A LAO/AO transport system 98.2 4.8E-07 1.7E-11 65.5 2.0 37 58-97 148-184 (341)
214 3sop_A Neuronal-specific septi 98.2 5.1E-06 1.7E-10 58.4 7.0 24 10-33 2-25 (270)
215 1f5n_A Interferon-induced guan 98.1 4.3E-06 1.5E-10 64.7 5.6 62 8-71 36-103 (592)
216 2qm8_A GTPase/ATPase; G protei 98.0 2.1E-06 7.1E-11 62.1 2.0 23 10-32 55-77 (337)
217 2j37_W Signal recognition part 97.9 5.7E-06 2E-10 62.9 3.6 23 9-31 100-122 (504)
218 2qag_B Septin-6, protein NEDD5 97.8 7.6E-05 2.6E-09 55.6 7.2 28 8-35 40-67 (427)
219 2yv5_A YJEQ protein; hydrolase 97.7 5.1E-05 1.7E-09 54.0 5.8 57 69-125 66-123 (302)
220 1kgd_A CASK, peripheral plasma 97.6 3.4E-05 1.2E-09 50.6 3.2 22 12-33 7-28 (180)
221 1ye8_A Protein THEP1, hypothet 97.6 3.9E-05 1.3E-09 50.5 3.4 22 12-33 2-23 (178)
222 1lvg_A Guanylate kinase, GMP k 97.6 5E-05 1.7E-09 50.7 3.2 21 12-32 6-26 (198)
223 1zp6_A Hypothetical protein AT 97.5 6.1E-05 2.1E-09 49.4 3.5 23 11-33 10-32 (191)
224 3a00_A Guanylate kinase, GMP k 97.5 6.4E-05 2.2E-09 49.5 3.1 21 13-33 4-24 (186)
225 1knq_A Gluconate kinase; ALFA/ 97.5 9.3E-05 3.2E-09 48.0 3.8 23 10-32 8-30 (175)
226 3tr0_A Guanylate kinase, GMP k 97.5 7E-05 2.4E-09 49.7 3.2 22 12-33 9-30 (205)
227 1ex7_A Guanylate kinase; subst 97.5 7.6E-05 2.6E-09 49.6 3.2 21 13-33 4-24 (186)
228 3ney_A 55 kDa erythrocyte memb 97.4 9.1E-05 3.1E-09 49.7 3.2 25 9-33 18-42 (197)
229 3tau_A Guanylate kinase, GMP k 97.4 9.9E-05 3.4E-09 49.5 3.3 22 12-33 10-31 (208)
230 1znw_A Guanylate kinase, GMP k 97.4 9.4E-05 3.2E-09 49.5 3.2 22 12-33 22-43 (207)
231 1z6g_A Guanylate kinase; struc 97.4 9.5E-05 3.2E-09 50.1 3.2 22 12-33 25-46 (218)
232 1s96_A Guanylate kinase, GMP k 97.4 9.8E-05 3.3E-09 50.2 3.2 22 12-33 18-39 (219)
233 2qor_A Guanylate kinase; phosp 97.4 0.00011 3.8E-09 49.0 3.2 23 11-33 13-35 (204)
234 3q5d_A Atlastin-1; G protein, 97.4 0.00025 8.5E-09 53.2 5.4 25 8-32 65-89 (447)
235 3kb2_A SPBC2 prophage-derived 97.4 0.00013 4.4E-09 46.9 3.3 22 12-33 3-24 (173)
236 1ly1_A Polynucleotide kinase; 97.3 0.00013 4.6E-09 47.2 3.2 22 11-32 3-24 (181)
237 1kag_A SKI, shikimate kinase I 97.3 0.00014 4.7E-09 47.0 3.2 23 11-33 5-27 (173)
238 3lw7_A Adenylate kinase relate 97.3 0.00014 4.8E-09 46.6 3.2 20 11-30 2-21 (179)
239 3c8u_A Fructokinase; YP_612366 97.3 0.00015 5.3E-09 48.5 3.5 25 8-32 20-44 (208)
240 2j41_A Guanylate kinase; GMP, 97.3 0.00014 4.9E-09 48.1 3.1 24 11-34 7-30 (207)
241 1via_A Shikimate kinase; struc 97.3 0.00016 5.6E-09 46.9 3.1 21 12-32 6-26 (175)
242 4gp7_A Metallophosphoesterase; 97.3 0.00013 4.5E-09 47.4 2.7 18 12-29 11-28 (171)
243 3vaa_A Shikimate kinase, SK; s 97.3 0.00019 6.4E-09 47.7 3.4 22 11-32 26-47 (199)
244 2bdt_A BH3686; alpha-beta prot 97.3 0.00017 5.8E-09 47.4 3.2 21 12-32 4-24 (189)
245 1qhx_A CPT, protein (chloramph 97.3 0.00018 6.1E-09 46.6 3.2 22 12-33 5-26 (178)
246 3fb4_A Adenylate kinase; psych 97.3 0.00019 6.5E-09 48.0 3.4 21 12-32 2-22 (216)
247 3dl0_A Adenylate kinase; phosp 97.2 0.00021 7.1E-09 47.9 3.4 21 12-32 2-22 (216)
248 4eun_A Thermoresistant glucoki 97.2 0.00022 7.4E-09 47.4 3.4 22 11-32 30-51 (200)
249 3t61_A Gluconokinase; PSI-biol 97.2 0.0002 6.7E-09 47.6 3.1 22 11-32 19-40 (202)
250 1htw_A HI0065; nucleotide-bind 97.2 0.00021 7.1E-09 46.2 3.2 23 12-34 35-57 (158)
251 2cdn_A Adenylate kinase; phosp 97.2 0.00026 8.9E-09 46.9 3.7 25 8-32 18-42 (201)
252 2bbw_A Adenylate kinase 4, AK4 97.2 0.00022 7.5E-09 48.9 3.4 21 11-31 28-48 (246)
253 2wwf_A Thymidilate kinase, put 97.2 0.00029 9.8E-09 46.9 3.9 24 9-32 9-32 (212)
254 2jaq_A Deoxyguanosine kinase; 97.2 0.00024 8E-09 46.9 3.4 21 12-32 2-22 (205)
255 1nks_A Adenylate kinase; therm 97.2 0.00022 7.6E-09 46.6 3.2 21 12-32 3-23 (194)
256 3trf_A Shikimate kinase, SK; a 97.2 0.00024 8.4E-09 46.3 3.4 22 11-32 6-27 (185)
257 3l82_B F-box only protein 4; T 97.2 5.5E-05 1.9E-09 51.4 0.2 55 67-122 110-170 (227)
258 3asz_A Uridine kinase; cytidin 97.2 0.00024 8.1E-09 47.4 3.4 25 9-33 5-29 (211)
259 3uie_A Adenylyl-sulfate kinase 97.2 0.00022 7.6E-09 47.4 3.2 23 10-32 25-47 (200)
260 3tif_A Uncharacterized ABC tra 97.2 0.00019 6.5E-09 49.3 2.9 22 12-33 33-54 (235)
261 1ukz_A Uridylate kinase; trans 97.2 0.00035 1.2E-08 46.3 4.1 24 9-32 14-37 (203)
262 1uf9_A TT1252 protein; P-loop, 97.2 0.00029 1E-08 46.5 3.6 26 8-33 6-31 (203)
263 2i3b_A HCR-ntpase, human cance 97.2 0.00023 7.8E-09 47.3 3.0 22 12-33 3-24 (189)
264 3sr0_A Adenylate kinase; phosp 97.2 0.00029 9.7E-09 47.5 3.4 21 12-32 2-22 (206)
265 1cke_A CK, MSSA, protein (cyti 97.2 0.00029 9.9E-09 47.4 3.4 22 11-32 6-27 (227)
266 1kht_A Adenylate kinase; phosp 97.2 0.0003 1E-08 45.9 3.4 22 11-32 4-25 (192)
267 2rhm_A Putative kinase; P-loop 97.2 0.0003 1E-08 46.0 3.4 23 10-32 5-27 (193)
268 3cm0_A Adenylate kinase; ATP-b 97.2 0.00037 1.3E-08 45.4 3.8 23 10-32 4-26 (186)
269 2yvu_A Probable adenylyl-sulfa 97.1 0.00043 1.5E-08 45.3 4.1 25 8-32 11-35 (186)
270 1y63_A LMAJ004144AAA protein; 97.1 0.00036 1.2E-08 45.8 3.6 24 10-33 10-33 (184)
271 2if2_A Dephospho-COA kinase; a 97.1 0.0003 1E-08 46.7 3.2 22 11-32 2-23 (204)
272 3ec2_A DNA replication protein 97.1 0.00026 9.1E-09 46.1 2.9 24 10-33 38-61 (180)
273 1zd8_A GTP:AMP phosphotransfer 97.1 0.0003 1E-08 47.6 3.2 23 10-32 7-29 (227)
274 2pcj_A ABC transporter, lipopr 97.1 0.00023 7.9E-09 48.4 2.7 22 12-33 32-53 (224)
275 3umf_A Adenylate kinase; rossm 97.1 0.00046 1.6E-08 46.9 4.1 24 9-32 27-51 (217)
276 2onk_A Molybdate/tungstate ABC 97.1 0.00031 1.1E-08 48.4 3.2 22 12-33 26-47 (240)
277 1tev_A UMP-CMP kinase; ploop, 97.1 0.0004 1.4E-08 45.3 3.6 23 10-32 3-25 (196)
278 1e4v_A Adenylate kinase; trans 97.1 0.00032 1.1E-08 47.0 3.2 21 12-32 2-22 (214)
279 1np6_A Molybdopterin-guanine d 97.1 0.00034 1.2E-08 45.9 3.2 24 10-33 6-29 (174)
280 1b0u_A Histidine permease; ABC 97.1 0.00029 9.9E-09 49.1 2.9 22 12-33 34-55 (262)
281 1aky_A Adenylate kinase; ATP:A 97.1 0.0004 1.4E-08 46.7 3.5 22 11-32 5-26 (220)
282 3gfo_A Cobalt import ATP-bindi 97.1 0.0003 1E-08 49.4 2.9 22 12-33 36-57 (275)
283 2eyu_A Twitching motility prot 97.1 0.00035 1.2E-08 48.7 3.2 22 12-33 27-48 (261)
284 3tlx_A Adenylate kinase 2; str 97.1 0.00044 1.5E-08 47.5 3.7 24 9-32 28-51 (243)
285 2cbz_A Multidrug resistance-as 97.1 0.00034 1.2E-08 48.0 3.1 22 12-33 33-54 (237)
286 4a74_A DNA repair and recombin 97.1 0.00033 1.1E-08 47.1 2.9 22 12-33 27-48 (231)
287 2ehv_A Hypothetical protein PH 97.1 0.00036 1.2E-08 47.4 3.2 20 12-31 32-51 (251)
288 3lnc_A Guanylate kinase, GMP k 97.1 0.0002 6.9E-09 48.6 1.9 22 12-33 29-51 (231)
289 2rcn_A Probable GTPase ENGC; Y 97.1 0.00037 1.3E-08 50.8 3.3 24 12-35 217-240 (358)
290 1sgw_A Putative ABC transporte 97.1 0.00034 1.2E-08 47.4 2.9 22 12-33 37-58 (214)
291 2qt1_A Nicotinamide riboside k 97.1 0.00053 1.8E-08 45.6 3.9 25 9-33 20-44 (207)
292 3be4_A Adenylate kinase; malar 97.1 0.0004 1.4E-08 46.8 3.3 24 9-32 4-27 (217)
293 1jjv_A Dephospho-COA kinase; P 97.1 0.00047 1.6E-08 45.8 3.6 22 11-32 3-24 (206)
294 2plr_A DTMP kinase, probable t 97.1 0.00048 1.7E-08 45.6 3.6 22 11-32 5-26 (213)
295 2ff7_A Alpha-hemolysin translo 97.0 0.00037 1.3E-08 48.2 3.1 22 12-33 37-58 (247)
296 1g6h_A High-affinity branched- 97.0 0.00033 1.1E-08 48.6 2.9 22 12-33 35-56 (257)
297 1gvn_B Zeta; postsegregational 97.0 0.0005 1.7E-08 48.5 3.8 24 9-32 32-55 (287)
298 3iij_A Coilin-interacting nucl 97.0 0.00047 1.6E-08 44.8 3.4 23 10-32 11-33 (180)
299 1mv5_A LMRA, multidrug resista 97.0 0.00039 1.3E-08 47.9 3.1 22 12-33 30-51 (243)
300 2v9p_A Replication protein E1; 97.0 0.00042 1.4E-08 49.5 3.3 21 12-32 128-148 (305)
301 1qf9_A UMP/CMP kinase, protein 97.0 0.00057 2E-08 44.5 3.8 22 11-32 7-28 (194)
302 2pt5_A Shikimate kinase, SK; a 97.0 0.00049 1.7E-08 44.1 3.4 21 12-32 2-22 (168)
303 1zak_A Adenylate kinase; ATP:A 97.0 0.00034 1.2E-08 47.1 2.7 22 11-32 6-27 (222)
304 3aez_A Pantothenate kinase; tr 97.0 0.00039 1.3E-08 49.7 3.2 25 8-32 88-112 (312)
305 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00041 1.4E-08 48.0 3.2 22 12-33 31-52 (250)
306 2ze6_A Isopentenyl transferase 97.0 0.00041 1.4E-08 48.0 3.2 21 12-32 3-23 (253)
307 4g1u_C Hemin import ATP-bindin 97.0 0.00034 1.2E-08 48.9 2.8 22 12-33 39-60 (266)
308 2zu0_C Probable ATP-dependent 97.0 0.00042 1.4E-08 48.5 3.2 22 12-33 48-69 (267)
309 2olj_A Amino acid ABC transpor 97.0 0.00037 1.3E-08 48.7 2.9 22 12-33 52-73 (263)
310 2pze_A Cystic fibrosis transme 97.0 0.00038 1.3E-08 47.5 2.9 22 12-33 36-57 (229)
311 3b85_A Phosphate starvation-in 97.0 0.00035 1.2E-08 47.1 2.7 22 12-33 24-45 (208)
312 1ji0_A ABC transporter; ATP bi 97.0 0.00037 1.3E-08 47.9 2.9 22 12-33 34-55 (240)
313 1lw7_A Transcriptional regulat 97.0 0.00035 1.2E-08 50.8 2.8 24 10-33 170-193 (365)
314 1jbk_A CLPB protein; beta barr 97.0 0.00052 1.8E-08 44.3 3.4 23 11-33 44-66 (195)
315 3foz_A TRNA delta(2)-isopenten 97.0 0.00056 1.9E-08 49.0 3.8 33 1-33 1-33 (316)
316 2v54_A DTMP kinase, thymidylat 97.0 0.00057 1.9E-08 45.1 3.6 23 11-33 5-27 (204)
317 1odf_A YGR205W, hypothetical 3 97.0 0.00066 2.3E-08 48.0 4.1 24 8-31 29-52 (290)
318 1uj2_A Uridine-cytidine kinase 97.0 0.00054 1.8E-08 47.2 3.6 26 7-32 19-44 (252)
319 2c95_A Adenylate kinase 1; tra 97.0 0.00046 1.6E-08 45.2 3.1 23 10-32 9-31 (196)
320 1vpl_A ABC transporter, ATP-bi 97.0 0.00042 1.4E-08 48.2 2.9 22 12-33 43-64 (256)
321 2f1r_A Molybdopterin-guanine d 97.0 0.0002 6.9E-09 46.9 1.2 22 12-33 4-25 (171)
322 2ghi_A Transport protein; mult 97.0 0.00047 1.6E-08 48.0 3.1 22 12-33 48-69 (260)
323 2qi9_C Vitamin B12 import ATP- 97.0 0.00043 1.5E-08 47.9 2.9 22 12-33 28-49 (249)
324 1tq4_A IIGP1, interferon-induc 97.0 0.00077 2.6E-08 50.1 4.4 24 10-33 69-92 (413)
325 2ixe_A Antigen peptide transpo 97.0 0.00042 1.5E-08 48.5 2.9 22 12-33 47-68 (271)
326 2xb4_A Adenylate kinase; ATP-b 97.0 0.00057 2E-08 46.2 3.4 21 12-32 2-22 (223)
327 2ihy_A ABC transporter, ATP-bi 97.0 0.00049 1.7E-08 48.5 3.1 22 12-33 49-70 (279)
328 2z0h_A DTMP kinase, thymidylat 96.9 0.00055 1.9E-08 44.9 3.2 22 12-33 2-23 (197)
329 2bwj_A Adenylate kinase 5; pho 96.9 0.0006 2.1E-08 44.8 3.2 23 10-32 12-34 (199)
330 2yz2_A Putative ABC transporte 96.9 0.00049 1.7E-08 48.0 2.9 22 12-33 35-56 (266)
331 1u0l_A Probable GTPase ENGC; p 96.9 0.00059 2E-08 48.4 3.3 23 12-34 171-193 (301)
332 2nq2_C Hypothetical ABC transp 96.9 0.0005 1.7E-08 47.7 2.9 22 12-33 33-54 (253)
333 2jeo_A Uridine-cytidine kinase 96.9 0.00059 2E-08 46.8 3.2 23 10-32 25-47 (245)
334 2yv5_A YJEQ protein; hydrolase 96.9 0.00056 1.9E-08 48.6 3.1 20 12-31 167-186 (302)
335 1e6c_A Shikimate kinase; phosp 96.9 0.00066 2.2E-08 43.6 3.2 21 12-32 4-24 (173)
336 2vli_A Antibiotic resistance p 96.9 0.00045 1.6E-08 44.8 2.4 23 10-32 5-27 (183)
337 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00052 1.8E-08 50.1 3.0 22 12-33 32-53 (359)
338 1ak2_A Adenylate kinase isoenz 96.9 0.00071 2.4E-08 46.0 3.5 23 10-32 16-38 (233)
339 2pbr_A DTMP kinase, thymidylat 96.9 0.0007 2.4E-08 44.2 3.4 21 12-32 2-22 (195)
340 1ixz_A ATP-dependent metallopr 96.9 0.00062 2.1E-08 46.7 3.2 22 12-33 51-72 (254)
341 2iyv_A Shikimate kinase, SK; t 96.9 0.00065 2.2E-08 44.2 3.2 21 12-32 4-24 (184)
342 1rj9_A FTSY, signal recognitio 96.9 0.0006 2.1E-08 48.6 3.2 23 10-32 102-124 (304)
343 2p5t_B PEZT; postsegregational 96.9 0.00068 2.3E-08 46.8 3.3 25 8-32 30-54 (253)
344 2pjz_A Hypothetical protein ST 96.9 0.00063 2.2E-08 47.5 3.1 23 12-34 32-54 (263)
345 2kjq_A DNAA-related protein; s 96.9 0.00051 1.7E-08 43.8 2.4 22 12-33 38-59 (149)
346 2x8a_A Nuclear valosin-contain 96.9 0.00065 2.2E-08 47.6 3.1 21 13-33 47-67 (274)
347 1gtv_A TMK, thymidylate kinase 96.9 0.00021 7.3E-09 47.6 0.6 21 12-32 2-22 (214)
348 1nn5_A Similar to deoxythymidy 96.9 0.00073 2.5E-08 44.9 3.2 23 10-32 9-31 (215)
349 3tqc_A Pantothenate kinase; bi 96.9 0.00095 3.3E-08 48.0 3.9 25 8-32 90-114 (321)
350 1z47_A CYSA, putative ABC-tran 96.9 0.00068 2.3E-08 49.4 3.2 22 12-33 43-64 (355)
351 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00087 3E-08 46.4 3.6 22 11-32 5-26 (260)
352 3b9q_A Chloroplast SRP recepto 96.8 0.00073 2.5E-08 48.1 3.2 22 11-32 101-122 (302)
353 3rlf_A Maltose/maltodextrin im 96.8 0.00073 2.5E-08 49.7 3.2 22 12-33 31-52 (381)
354 2it1_A 362AA long hypothetical 96.8 0.00073 2.5E-08 49.3 3.2 22 12-33 31-52 (362)
355 1rz3_A Hypothetical protein rb 96.8 0.00097 3.3E-08 44.3 3.6 24 9-32 21-44 (201)
356 2xtz_A Guanine nucleotide-bind 96.8 0.0012 4E-08 48.1 4.3 28 4-31 3-30 (354)
357 2yyz_A Sugar ABC transporter, 96.8 0.00072 2.5E-08 49.3 3.2 22 12-33 31-52 (359)
358 2p65_A Hypothetical protein PF 96.8 0.00061 2.1E-08 43.9 2.5 24 10-33 43-66 (187)
359 1xjc_A MOBB protein homolog; s 96.8 0.001 3.4E-08 43.5 3.5 22 11-32 5-26 (169)
360 1zuh_A Shikimate kinase; alpha 96.8 0.001 3.4E-08 42.7 3.5 23 10-32 7-29 (168)
361 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00084 2.9E-08 45.0 3.2 21 12-32 25-45 (235)
362 4e22_A Cytidylate kinase; P-lo 96.8 0.00093 3.2E-08 46.1 3.4 21 11-31 28-48 (252)
363 1g29_1 MALK, maltose transport 96.8 0.0008 2.7E-08 49.3 3.2 22 12-33 31-52 (372)
364 3e70_C DPA, signal recognition 96.8 0.00083 2.8E-08 48.4 3.2 24 9-32 128-151 (328)
365 1v43_A Sugar-binding transport 96.8 0.00082 2.8E-08 49.2 3.2 22 12-33 39-60 (372)
366 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00092 3.2E-08 48.8 3.4 24 8-31 31-54 (362)
367 2pez_A Bifunctional 3'-phospho 96.8 0.00097 3.3E-08 43.3 3.2 23 10-32 5-27 (179)
368 1vht_A Dephospho-COA kinase; s 96.8 0.0012 4E-08 44.3 3.7 23 10-32 4-26 (218)
369 3bos_A Putative DNA replicatio 96.8 0.001 3.5E-08 44.7 3.4 24 10-33 52-75 (242)
370 3nh6_A ATP-binding cassette SU 96.8 0.00048 1.6E-08 49.2 1.8 22 12-33 82-103 (306)
371 2bbs_A Cystic fibrosis transme 96.8 0.00077 2.6E-08 47.7 2.9 22 12-33 66-87 (290)
372 1in4_A RUVB, holliday junction 96.8 0.00088 3E-08 48.1 3.2 22 12-33 53-74 (334)
373 3jvv_A Twitching mobility prot 96.8 0.00086 3E-08 48.8 3.1 22 12-33 125-146 (356)
374 1iy2_A ATP-dependent metallopr 96.7 0.00097 3.3E-08 46.5 3.2 22 12-33 75-96 (278)
375 3tui_C Methionine import ATP-b 96.7 0.00095 3.2E-08 48.8 3.2 22 12-33 56-77 (366)
376 1t9h_A YLOQ, probable GTPase E 96.7 0.00022 7.5E-09 51.0 -0.1 23 11-33 174-196 (307)
377 1sq5_A Pantothenate kinase; P- 96.7 0.0012 4.1E-08 46.9 3.7 24 9-32 79-102 (308)
378 1lv7_A FTSH; alpha/beta domain 96.7 0.0011 3.8E-08 45.5 3.4 23 11-33 46-68 (257)
379 1m7g_A Adenylylsulfate kinase; 96.7 0.0011 3.8E-08 44.3 3.2 22 11-32 26-47 (211)
380 2vp4_A Deoxynucleoside kinase; 96.7 0.00066 2.2E-08 46.1 2.1 24 10-33 20-43 (230)
381 3l2o_B F-box only protein 4; s 96.7 0.00033 1.1E-08 49.8 0.5 57 66-122 194-255 (312)
382 2gza_A Type IV secretion syste 96.7 0.00092 3.1E-08 48.7 2.9 23 11-33 176-198 (361)
383 3gd7_A Fusion complex of cysti 96.7 0.00096 3.3E-08 49.2 3.0 22 12-33 49-70 (390)
384 2cvh_A DNA repair and recombin 96.7 0.0012 4E-08 44.0 3.2 21 12-32 22-42 (220)
385 2ewv_A Twitching motility prot 96.7 0.0011 3.9E-08 48.4 3.3 21 12-32 138-158 (372)
386 3d3q_A TRNA delta(2)-isopenten 96.7 0.0015 5E-08 47.4 3.8 23 11-33 8-30 (340)
387 1ltq_A Polynucleotide kinase; 96.7 0.0011 3.9E-08 46.5 3.2 22 11-32 3-24 (301)
388 3d31_A Sulfate/molybdate ABC t 96.7 0.00066 2.3E-08 49.3 2.0 22 12-33 28-49 (348)
389 2f6r_A COA synthase, bifunctio 96.7 0.0015 5E-08 45.9 3.7 24 9-32 74-97 (281)
390 2w58_A DNAI, primosome compone 96.6 0.0014 4.9E-08 43.2 3.4 23 11-33 55-77 (202)
391 3r20_A Cytidylate kinase; stru 96.6 0.0014 5E-08 44.9 3.5 24 9-32 8-31 (233)
392 1n0w_A DNA repair protein RAD5 96.6 0.0013 4.5E-08 44.4 3.2 22 12-33 26-47 (243)
393 2og2_A Putative signal recogni 96.6 0.0012 4.2E-08 48.1 3.2 22 11-32 158-179 (359)
394 3nwj_A ATSK2; P loop, shikimat 96.6 0.0012 4E-08 45.8 2.9 22 11-32 49-70 (250)
395 3kta_A Chromosome segregation 96.6 0.0013 4.3E-08 42.8 3.0 21 12-32 28-48 (182)
396 2chg_A Replication factor C sm 96.6 0.0014 4.8E-08 43.2 3.2 22 12-33 40-61 (226)
397 1njg_A DNA polymerase III subu 96.6 0.0014 4.7E-08 43.7 3.1 22 12-33 47-68 (250)
398 1cr0_A DNA primase/helicase; R 96.6 0.0012 4.1E-08 46.4 2.9 22 12-33 37-58 (296)
399 4eaq_A DTMP kinase, thymidylat 96.6 0.0014 4.9E-08 44.6 3.2 25 9-33 25-49 (229)
400 2yhs_A FTSY, cell division pro 96.6 0.0014 4.9E-08 49.7 3.2 22 11-32 294-315 (503)
401 3h4m_A Proteasome-activating n 96.6 0.0016 5.6E-08 45.2 3.3 24 10-33 51-74 (285)
402 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.0012 4E-08 49.7 2.7 23 11-33 139-161 (460)
403 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0011 3.7E-08 47.7 2.4 22 12-33 173-194 (330)
404 2obl_A ESCN; ATPase, hydrolase 96.5 0.0015 5.3E-08 47.3 3.2 24 11-34 72-95 (347)
405 3syl_A Protein CBBX; photosynt 96.5 0.002 6.8E-08 45.3 3.7 24 9-32 66-89 (309)
406 3crm_A TRNA delta(2)-isopenten 96.5 0.0018 6.3E-08 46.5 3.5 22 11-32 6-27 (323)
407 1oxx_K GLCV, glucose, ABC tran 96.5 0.00068 2.3E-08 49.3 1.2 22 12-33 33-54 (353)
408 3n70_A Transport activator; si 96.5 0.0017 5.9E-08 40.9 3.0 25 10-34 24-48 (145)
409 3b9p_A CG5977-PA, isoform A; A 96.5 0.0018 6.1E-08 45.3 3.3 24 10-33 54-77 (297)
410 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.002 6.8E-08 44.1 3.5 24 10-33 39-62 (262)
411 1p9r_A General secretion pathw 96.5 0.0017 5.7E-08 48.3 3.1 22 12-33 169-190 (418)
412 2grj_A Dephospho-COA kinase; T 96.5 0.0024 8.1E-08 42.5 3.6 26 8-33 10-35 (192)
413 1d2n_A N-ethylmaleimide-sensit 96.5 0.0029 9.8E-08 43.8 4.1 26 8-33 62-87 (272)
414 2dpy_A FLII, flagellum-specifi 96.4 0.0019 6.7E-08 48.2 3.2 24 11-34 158-181 (438)
415 3t15_A Ribulose bisphosphate c 96.4 0.0027 9.1E-08 44.8 3.8 24 10-33 36-59 (293)
416 4fcw_A Chaperone protein CLPB; 96.4 0.0031 1.1E-07 44.3 4.1 24 10-33 47-70 (311)
417 2oap_1 GSPE-2, type II secreti 96.4 0.0017 5.9E-08 49.4 2.9 22 12-33 262-283 (511)
418 1nij_A Hypothetical protein YJ 96.4 0.0016 5.3E-08 46.6 2.5 25 10-34 4-28 (318)
419 3cf0_A Transitional endoplasmi 96.4 0.0023 7.9E-08 45.2 3.3 23 11-33 50-72 (301)
420 1l8q_A Chromosomal replication 96.4 0.0021 7.1E-08 45.7 3.1 23 11-33 38-60 (324)
421 2qmh_A HPR kinase/phosphorylas 96.4 0.0027 9.3E-08 42.7 3.4 23 11-33 35-57 (205)
422 3szr_A Interferon-induced GTP- 96.4 0.0014 4.7E-08 50.9 2.1 24 11-34 46-69 (608)
423 1ofh_A ATP-dependent HSL prote 96.3 0.0024 8.4E-08 44.6 3.2 24 10-33 50-73 (310)
424 1c9k_A COBU, adenosylcobinamid 96.3 0.0025 8.7E-08 42.0 3.0 21 13-33 2-22 (180)
425 2qby_A CDC6 homolog 1, cell di 96.3 0.0022 7.6E-08 46.0 3.0 23 11-33 46-68 (386)
426 3a8t_A Adenylate isopentenyltr 96.3 0.0026 9E-08 46.0 3.3 22 12-33 42-63 (339)
427 1q3t_A Cytidylate kinase; nucl 96.3 0.003 1E-07 42.9 3.4 25 8-32 14-38 (236)
428 1nlf_A Regulatory protein REPA 96.3 0.0023 7.9E-08 44.6 2.9 21 12-32 32-52 (279)
429 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0034 1.2E-07 45.7 3.9 25 8-32 22-46 (359)
430 3ake_A Cytidylate kinase; CMP 96.3 0.0031 1E-07 41.6 3.4 21 12-32 4-24 (208)
431 3exa_A TRNA delta(2)-isopenten 96.3 0.0028 9.7E-08 45.5 3.3 22 12-33 5-26 (322)
432 2dr3_A UPF0273 protein PH0284; 96.3 0.0025 8.6E-08 43.1 3.0 21 12-32 25-45 (247)
433 3zvl_A Bifunctional polynucleo 96.3 0.0037 1.3E-07 46.3 4.0 24 10-33 258-281 (416)
434 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0029 1E-07 48.4 3.5 22 12-33 49-70 (538)
435 1svm_A Large T antigen; AAA+ f 96.3 0.0027 9.4E-08 46.5 3.2 22 11-32 170-191 (377)
436 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.003 1E-07 40.1 2.9 19 13-31 26-44 (149)
437 3b60_A Lipid A export ATP-bind 96.2 0.0024 8.3E-08 49.2 2.9 22 12-33 371-392 (582)
438 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0031 1.1E-07 45.0 3.3 23 11-33 46-68 (322)
439 3b5x_A Lipid A export ATP-bind 96.2 0.0028 9.7E-08 48.8 3.3 22 12-33 371-392 (582)
440 3eie_A Vacuolar protein sortin 96.2 0.0032 1.1E-07 44.8 3.3 24 10-33 51-74 (322)
441 1tue_A Replication protein E1; 96.2 0.0025 8.5E-08 43.1 2.5 22 11-32 59-80 (212)
442 1sxj_E Activator 1 40 kDa subu 96.2 0.0024 8.3E-08 45.7 2.6 20 13-32 39-58 (354)
443 4ido_A Atlastin-1; GTPase, GTP 96.2 0.011 3.6E-07 44.5 6.1 63 9-71 66-152 (457)
444 3euj_A Chromosome partition pr 96.2 0.0031 1E-07 47.8 3.2 21 12-32 31-51 (483)
445 1fnn_A CDC6P, cell division co 96.2 0.0032 1.1E-07 45.4 3.2 22 12-33 46-67 (389)
446 1cip_A Protein (guanine nucleo 96.2 0.0037 1.3E-07 45.4 3.5 24 8-31 30-53 (353)
447 2px0_A Flagellar biosynthesis 96.2 0.0029 1E-07 44.8 2.9 22 11-32 106-127 (296)
448 4b4t_M 26S protease regulatory 96.2 0.0036 1.2E-07 46.8 3.5 24 10-33 215-238 (434)
449 1sxj_C Activator 1 40 kDa subu 96.2 0.0032 1.1E-07 45.1 3.1 22 12-33 48-69 (340)
450 1vma_A Cell division protein F 96.2 0.0035 1.2E-07 44.7 3.2 22 11-32 105-126 (306)
451 4b4t_K 26S protease regulatory 96.2 0.0037 1.3E-07 46.6 3.5 23 11-33 207-229 (428)
452 3uk6_A RUVB-like 2; hexameric 96.1 0.0037 1.3E-07 45.0 3.2 23 11-33 71-93 (368)
453 2v1u_A Cell division control p 96.1 0.0031 1.1E-07 45.3 2.8 24 10-33 44-67 (387)
454 2yl4_A ATP-binding cassette SU 96.1 0.0026 9E-08 49.1 2.4 22 12-33 372-393 (595)
455 4b4t_L 26S protease subunit RP 96.1 0.0042 1.4E-07 46.4 3.5 23 11-33 216-238 (437)
456 1p5z_B DCK, deoxycytidine kina 96.1 0.0024 8.1E-08 44.1 2.0 24 9-32 23-46 (263)
457 2qen_A Walker-type ATPase; unk 96.1 0.004 1.4E-07 44.1 3.2 23 11-33 32-54 (350)
458 3pxg_A Negative regulator of g 96.1 0.0039 1.3E-07 46.9 3.2 24 10-33 201-224 (468)
459 1sxj_D Activator 1 41 kDa subu 96.1 0.004 1.4E-07 44.4 3.2 22 12-33 60-81 (353)
460 3qf4_B Uncharacterized ABC tra 96.0 0.003 1E-07 48.9 2.6 22 12-33 383-404 (598)
461 3pfi_A Holliday junction ATP-d 96.0 0.0042 1.4E-07 44.2 3.2 23 11-33 56-78 (338)
462 1um8_A ATP-dependent CLP prote 96.0 0.0043 1.5E-07 45.0 3.2 24 10-33 72-95 (376)
463 2r62_A Cell division protease 96.0 0.0017 6E-08 44.7 1.1 21 12-32 46-66 (268)
464 1pzn_A RAD51, DNA repair and r 96.0 0.0039 1.3E-07 45.2 2.9 22 12-33 133-154 (349)
465 3co5_A Putative two-component 96.0 0.0018 6.2E-08 40.7 1.1 23 11-33 28-50 (143)
466 3j16_B RLI1P; ribosome recycli 96.0 0.0041 1.4E-07 48.3 3.2 22 12-33 105-126 (608)
467 3ozx_A RNAse L inhibitor; ATP 96.0 0.0037 1.3E-07 47.9 2.9 22 12-33 27-48 (538)
468 3hws_A ATP-dependent CLP prote 96.0 0.0045 1.5E-07 44.7 3.2 25 9-33 50-74 (363)
469 3gmt_A Adenylate kinase; ssgci 96.0 0.0057 1.9E-07 41.9 3.4 24 9-32 7-30 (230)
470 2ocp_A DGK, deoxyguanosine kin 96.0 0.0046 1.6E-07 42.1 3.0 23 11-33 3-25 (241)
471 2qp9_X Vacuolar protein sortin 96.0 0.0047 1.6E-07 44.7 3.1 23 11-33 85-107 (355)
472 1a7j_A Phosphoribulokinase; tr 96.0 0.0025 8.6E-08 45.0 1.6 23 10-32 5-27 (290)
473 2bjv_A PSP operon transcriptio 96.0 0.0051 1.7E-07 42.3 3.2 23 11-33 30-52 (265)
474 3d8b_A Fidgetin-like protein 1 95.9 0.0055 1.9E-07 44.3 3.4 24 10-33 117-140 (357)
475 2qby_B CDC6 homolog 3, cell di 95.9 0.0046 1.6E-07 44.6 3.0 23 11-33 46-68 (384)
476 3ozx_A RNAse L inhibitor; ATP 95.9 0.0043 1.5E-07 47.5 2.9 22 12-33 296-317 (538)
477 3m6a_A ATP-dependent protease 95.9 0.0047 1.6E-07 47.3 3.1 22 11-32 109-130 (543)
478 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0054 1.9E-07 47.0 3.5 23 12-34 314-336 (538)
479 2h92_A Cytidylate kinase; ross 95.9 0.0052 1.8E-07 41.0 3.0 22 11-32 4-25 (219)
480 2fna_A Conserved hypothetical 95.9 0.0047 1.6E-07 43.8 2.9 22 12-33 32-53 (357)
481 2qgz_A Helicase loader, putati 95.9 0.0059 2E-07 43.4 3.4 23 10-32 152-174 (308)
482 4b4t_J 26S protease regulatory 95.9 0.0052 1.8E-07 45.5 3.2 23 11-33 183-205 (405)
483 3ld9_A DTMP kinase, thymidylat 95.9 0.0072 2.5E-07 41.2 3.6 25 8-32 19-43 (223)
484 4a82_A Cystic fibrosis transme 95.9 0.0026 9E-08 49.0 1.5 22 12-33 369-390 (578)
485 3qf7_A RAD50; ABC-ATPase, ATPa 95.9 0.0056 1.9E-07 44.6 3.2 19 13-31 26-44 (365)
486 2z4s_A Chromosomal replication 95.9 0.0053 1.8E-07 45.8 3.1 22 11-32 131-152 (440)
487 3bk7_A ABC transporter ATP-bin 95.8 0.0053 1.8E-07 47.7 3.1 22 12-33 119-140 (607)
488 1azs_C GS-alpha; complex (lyas 95.8 0.006 2.1E-07 45.1 3.3 24 8-31 38-61 (402)
489 3bk7_A ABC transporter ATP-bin 95.8 0.0056 1.9E-07 47.6 3.2 23 12-34 384-406 (607)
490 3tqf_A HPR(Ser) kinase; transf 95.8 0.0071 2.4E-07 39.8 3.2 23 11-33 17-39 (181)
491 1g41_A Heat shock protein HSLU 95.8 0.0054 1.8E-07 45.9 3.0 23 10-32 50-72 (444)
492 3lda_A DNA repair protein RAD5 95.8 0.0052 1.8E-07 45.4 2.9 20 12-31 180-199 (400)
493 3pvs_A Replication-associated 95.8 0.0058 2E-07 45.7 3.2 23 11-33 51-73 (447)
494 3qf4_A ABC transporter, ATP-bi 95.8 0.0034 1.2E-07 48.5 2.0 22 12-33 371-392 (587)
495 4edh_A DTMP kinase, thymidylat 95.8 0.008 2.7E-07 40.5 3.6 24 9-32 5-28 (213)
496 3v9p_A DTMP kinase, thymidylat 95.8 0.0048 1.6E-07 42.1 2.5 23 10-32 25-47 (227)
497 2zts_A Putative uncharacterize 95.8 0.0069 2.4E-07 40.9 3.2 20 12-31 32-51 (251)
498 3eph_A TRNA isopentenyltransfe 95.7 0.006 2.1E-07 45.2 2.9 21 12-32 4-24 (409)
499 1hqc_A RUVB; extended AAA-ATPa 95.7 0.0046 1.6E-07 43.6 2.3 22 11-32 39-60 (324)
500 3cr8_A Sulfate adenylyltranfer 95.7 0.0037 1.3E-07 48.0 1.9 24 10-33 369-392 (552)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=4e-29 Score=171.58 Aligned_cols=120 Identities=40% Similarity=0.703 Sum_probs=99.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
++.+++||+++|+++||||||++||..+.|...+.++++.++..+.+..++..+++++||++|+++|..++..+++.+++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-CCCccccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQ-GIHIQSLLQRFFSC 125 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~l~~~~~~ 125 (133)
+++|||+++++||+++..|+..+.++ .+++|++|+++...
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~D 129 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 129 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTT
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence 99999999999999999999999776 57889988876543
No 2
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=147.36 Aligned_cols=121 Identities=38% Similarity=0.673 Sum_probs=106.0
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 032789 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (133)
Q Consensus 4 ~~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 83 (133)
.......+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 82 (181)
T 3tw8_B 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGT 82 (181)
T ss_dssp ---CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTC
T ss_pred ccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccC
Confidence 34566889999999999999999999999988888888898888888888898889999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 84 AAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 84 ~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|++++|||++++++++.+..|+..+.+..++.|+++..+..
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~ 123 (181)
T 3tw8_B 83 HGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKN 123 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 99999999999999999999999999988888887766543
No 3
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.94 E-value=2.7e-25 Score=147.00 Aligned_cols=123 Identities=86% Similarity=1.203 Sum_probs=104.4
Q ss_pred CCCCCCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 032789 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80 (133)
Q Consensus 1 m~~~~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~ 80 (133)
|+..+.+...+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..++
T Consensus 3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 82 (181)
T 2efe_B 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 82 (181)
T ss_dssp -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence 55666777899999999999999999999999998888888888888888888888889999999999999999999999
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 81 ~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
+.+|++++|||++++.+|+.+..|+..+.++. ++.|+++..+.
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK 126 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNK 126 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 99999999999999999999999999998875 46666655443
No 4
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.93 E-value=4.3e-25 Score=150.78 Aligned_cols=118 Identities=25% Similarity=0.472 Sum_probs=101.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+....+||+++|+++||||||++++.++.+...+.++.+.++ ...+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 455789999999999999999999999999888888888765 4556677778999999999999999999999999999
Q ss_pred EEEEEECCChhhHHH-HHHHHHHHHHhCCCcccccccccc
Q 032789 86 AIIVYDITNQASFER-AKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 86 iv~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+++|||++++++|++ +..|+..+.+..++.|++++++..
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 141 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT 141 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 999999999999999 789999999998888888876544
No 5
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.93 E-value=1.4e-24 Score=141.90 Aligned_cols=119 Identities=71% Similarity=1.031 Sum_probs=105.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.+...+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1r2q_A 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA 81 (170)
T ss_dssp CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence 35678999999999999999999999999888788888888888888888888999999999999999888999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-CCCccccc--ccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQ-GIHIQSLL--QRFFS 124 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~l--~~~~~ 124 (133)
+++|||++++++++.+..|+..+.+. .++.|+++ .++|.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl 123 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence 99999999999999999999999876 46777777 45554
No 6
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.93 E-value=1.1e-24 Score=145.15 Aligned_cols=117 Identities=27% Similarity=0.540 Sum_probs=102.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
+...+||+++|+++||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45789999999999999999999999998887778887665 44566777789999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhCCCcccccccccc
Q 032789 87 IIVYDITNQASFERA-KKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 87 v~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
++|||++++++|+++ ..|+..+.+..++.|+++.++..
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 121 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcc
Confidence 999999999999998 79999999888888888766543
No 7
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.93 E-value=3.2e-25 Score=149.96 Aligned_cols=119 Identities=41% Similarity=0.681 Sum_probs=96.7
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
......+||+++|+++||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 34567899999999999999999999999988878888888888888888888899999999999999988999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
++++|||++++++|+++..|+..+.+.. ++.|+++.++.
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK 143 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 9999999999999999999999998876 66777666543
No 8
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.93 E-value=9.1e-25 Score=148.42 Aligned_cols=118 Identities=28% Similarity=0.546 Sum_probs=102.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|++|||||||++++.++.+...+.++.+.++ ...+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 345789999999999999999999999999887888887665 4456667778999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHhCCCcccccccccc
Q 032789 86 AIIVYDITNQASFERA-KKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+++|||++++++|+++ ..|+..+.+..++.|+++.++..
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 142 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 142 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEech
Confidence 9999999999999999 79999999888888888765543
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.93 E-value=4.8e-25 Score=146.31 Aligned_cols=117 Identities=35% Similarity=0.705 Sum_probs=80.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 45789999999999999999999999888877888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
++|||++++++|+.+..|+..+.++. ++.|+++.++.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 99999999999999999999998864 56677666544
No 10
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.93 E-value=1e-24 Score=142.42 Aligned_cols=116 Identities=35% Similarity=0.666 Sum_probs=104.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
+|||++++++++.+..|+..+..+.++.|+++..+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK 118 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNK 118 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 999999999999999999999887677776665543
No 11
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.93 E-value=1.4e-24 Score=142.06 Aligned_cols=116 Identities=42% Similarity=0.760 Sum_probs=95.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999998888888888888878888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
++|||++++++++.+..|+..+.+.. ++.|+++..+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 119 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 119 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 99999999999999999999987754 4555555443
No 12
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.5e-24 Score=146.96 Aligned_cols=117 Identities=40% Similarity=0.700 Sum_probs=104.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 45578999999999999999999999999988888899888888888888888999999999999999888999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
+++|||++++++|+.+..|+..+.+.. .+.|+++.++
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~N 139 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGN 139 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 999999999999999999999998875 4566665544
No 13
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.93 E-value=3.6e-24 Score=140.01 Aligned_cols=115 Identities=48% Similarity=0.779 Sum_probs=103.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
..+.+||+++|++|||||||++++.++.+...+.++.+.++.......++....+.+||++|++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-CCCccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQ-GIHIQSLLQR 121 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~l~~ 121 (133)
++|||++++.+++.+..|+..+.+. .++.|+++.+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~ 118 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 118 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 9999999999999999999999887 4666766543
No 14
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.92 E-value=3.5e-24 Score=144.87 Aligned_cols=117 Identities=42% Similarity=0.706 Sum_probs=104.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 34578999999999999999999999999988888899888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
+++|||++++.+++.+..|+..+.+.. ++.|+++..+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 121 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 999999999999999999999998765 4566665544
No 15
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=2.8e-24 Score=140.43 Aligned_cols=113 Identities=57% Similarity=0.905 Sum_probs=101.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC-CCccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG-IHIQSLLQR 121 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~ 121 (133)
|||++++.+++++..|+..+.+.. ++.|+++..
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 115 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVG 115 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999999999999999999998775 567765543
No 16
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.92 E-value=3.6e-24 Score=143.60 Aligned_cols=118 Identities=27% Similarity=0.502 Sum_probs=103.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3557899999999999999999999999988888888877654 456778888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHhCCCcccccccccc
Q 032789 86 AIIVYDITNQASFERA-KKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+++|||++++++|+++ ..|+..+.+..++.|+++.++..
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 137 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKV 137 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 9999999999999997 78999999888888888776544
No 17
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=5.3e-24 Score=142.22 Aligned_cols=117 Identities=35% Similarity=0.653 Sum_probs=103.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 34568999999999999999999999999888788888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
+++|||++++.+++.+..|+..+.+.. ++.|+++..+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 135 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 999999999999999999999998875 4566665544
No 18
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.92 E-value=2.2e-24 Score=142.15 Aligned_cols=119 Identities=34% Similarity=0.579 Sum_probs=101.8
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
++....+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|
T Consensus 2 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (177)
T 1wms_A 2 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD 81 (177)
T ss_dssp CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred CCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCC
Confidence 35667899999999999999999999999988888888888888888888888899999999999999988899999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhC-----CCccccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQG-----IHIQSLLQRFF 123 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~~l~~~~ 123 (133)
++++|||++++++++.+..|+..+.... ++.|+++.++.
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK 125 (177)
T 1wms_A 82 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 125 (177)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEEC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEEC
Confidence 9999999999999999999999997754 55666655543
No 19
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.92 E-value=2.4e-24 Score=144.20 Aligned_cols=118 Identities=34% Similarity=0.673 Sum_probs=100.6
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
......+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34567899999999999999999999999988877788888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
++++|||++++++++.+..|+..+.++. ++.|+++..+
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~n 134 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 134 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 9999999999999999999999998764 4666665544
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=6.4e-24 Score=140.61 Aligned_cols=117 Identities=31% Similarity=0.459 Sum_probs=102.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+..+.+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 456789999999999999999999999988888888888776 6777788888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
+++|||++++++|+.+..|+..+.+.. ++.|+++.++.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 120 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNK 120 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 999999999999999999999997764 36666665544
No 21
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.92 E-value=3.3e-24 Score=142.43 Aligned_cols=119 Identities=35% Similarity=0.642 Sum_probs=105.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 45678999999999999999999999999988888888888888888888888999999999999999888999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFS 124 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~ 124 (133)
+++|||++++++++.+..|+..+.... ++.|+++..+..
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 125 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 999999999999999999999997764 566766655443
No 22
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.9e-24 Score=143.95 Aligned_cols=118 Identities=28% Similarity=0.455 Sum_probs=102.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+....+||+++|+++||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 345789999999999999999999999988887778877654 4556667778999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhCCCcccccccccc
Q 032789 86 AIIVYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+++|||++++++|+++. .|+..+.++.++.|+++.++..
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 132 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQI 132 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 99999999999999998 8999999987788877766543
No 23
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.92 E-value=3e-24 Score=145.80 Aligned_cols=117 Identities=30% Similarity=0.501 Sum_probs=101.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++++...+..+++.+|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 35789999999999999999999999998887878887654 44566777789999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhCCCcccccccccc
Q 032789 87 IIVYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
++|||++++++|+++. .|+..+.++.++.|+++.++..
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 123 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCH
Confidence 9999999999999997 8999999988888887776543
No 24
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3.4e-24 Score=143.68 Aligned_cols=118 Identities=53% Similarity=0.840 Sum_probs=103.2
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
....+.+||+++|+++||||||++++.++.+...+.++.+.++....+..++....+.+||++|++++...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 34567899999999999999999999999988778888888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
++++|||++++++++.+..|+..+.+.. ++.|+++..+
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~N 136 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGN 136 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 9999999999999999999999998875 4566665544
No 25
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.92 E-value=3.9e-24 Score=143.07 Aligned_cols=116 Identities=25% Similarity=0.415 Sum_probs=96.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|++|||||||++++.++.+...+.++.+..+ ......++..+.+.+||++|++++... ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 45789999999999999999999999998888888888765 455677888899999999999988765 6689999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC----CCcccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG----IHIQSLLQRFFS 124 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~~l~~~~~ 124 (133)
++|||++++++|+++..|+..+.+.. ++.|+++.++..
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 137 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECc
Confidence 99999999999999999999998764 577777666543
No 26
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.92 E-value=4.2e-24 Score=143.88 Aligned_cols=118 Identities=26% Similarity=0.464 Sum_probs=94.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 456789999999999999999999999888877777776544 4566778888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhCCCcccccccccc
Q 032789 86 AIIVYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+++|||++++++|+++. .|+..+.++.++.|+++.++..
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 134 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQS 134 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECH
Confidence 99999999999999997 7999999988888877765543
No 27
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.92 E-value=5.5e-24 Score=142.44 Aligned_cols=117 Identities=43% Similarity=0.742 Sum_probs=105.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 45679999999999999999999999999888888998888888888898889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCC-Cccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGI-HIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~ 123 (133)
++|||++++++++.+..|+..+.+... +.|+++..+.
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK 130 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 130 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 999999999999999999999988753 5666665543
No 28
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.92 E-value=2.6e-24 Score=143.77 Aligned_cols=118 Identities=35% Similarity=0.654 Sum_probs=102.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccc-ccccccccccC
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAA 84 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~-~~~~~~~~~~~ 84 (133)
+..+.+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34567999999999999999999999999988888888888888888888888999999999999887 78888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
++++|||++++.+++.+..|+..+.+.. .+.|+++..+.
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNK 136 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEEC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 9999999999999999999999998874 56666655443
No 29
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.92 E-value=4e-24 Score=140.89 Aligned_cols=118 Identities=34% Similarity=0.632 Sum_probs=104.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34578999999999999999999999999888888888888888888888888999999999999999989999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
+++|||++++.+++.+..|+..+.... ++.|+++..+.
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 129 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNK 129 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 999999999999999999999998765 56666665543
No 30
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=9.4e-24 Score=139.45 Aligned_cols=119 Identities=37% Similarity=0.694 Sum_probs=95.6
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 032789 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82 (133)
Q Consensus 4 ~~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 82 (133)
.......+||+++|+++||||||++++.++.+. ..+.++.+.++....+..++..+.+.+||++|++++...+..+++.
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 344567899999999999999999999998885 4567888888877777888888999999999999999999999999
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 83 AAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 83 ~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
+|++++|||++++.+++.+..|+..+.+.. .+.|+++..+
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 124 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 999999999999999999999999998876 4566665544
No 31
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.6e-24 Score=145.82 Aligned_cols=116 Identities=42% Similarity=0.734 Sum_probs=96.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 45679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
++|||++++.+|+.+..|+..+.... ++.|++++++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~n 126 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999999999999999998774 4566665544
No 32
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.92 E-value=7.5e-24 Score=142.83 Aligned_cols=117 Identities=35% Similarity=0.633 Sum_probs=104.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 35689999999999999999999999998888888888888888888888889999999999999988889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
++|||++++++|+.+..|+..+.... ++.|+++..+.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 122 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 99999999999999999999998865 46666665543
No 33
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.92 E-value=3.8e-24 Score=144.44 Aligned_cols=118 Identities=36% Similarity=0.668 Sum_probs=102.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 35578999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-----CCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG-----IHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~~l~~~~ 123 (133)
+++|||++++.+++.+..|+..+.... ++.|+++..+.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 999999999999999999999997764 35566655443
No 34
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=145.40 Aligned_cols=120 Identities=33% Similarity=0.638 Sum_probs=97.8
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 032789 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (133)
Q Consensus 4 ~~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 83 (133)
..+....+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 34566789999999999999999999999988877788888888888888888889999999999999988889999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhCC-Cccccccccc
Q 032789 84 AAAIIVYDITNQASFERAKKWVQELQAQGI-HIQSLLQRFF 123 (133)
Q Consensus 84 ~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~ 123 (133)
|++++|||++++.+++++..|+..+..... +.|+++.++.
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK 140 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNK 140 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 999999999999999999999999987754 5666655543
No 35
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=4.3e-24 Score=142.74 Aligned_cols=117 Identities=39% Similarity=0.715 Sum_probs=104.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|+++||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34567999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC--CCcccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRF 122 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~ 122 (133)
+++|||++++.+++.+..|+..+.+.. .+.|+++..+
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~n 129 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Confidence 999999999999999999999998764 4566655544
No 36
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.92 E-value=6.4e-24 Score=142.14 Aligned_cols=117 Identities=37% Similarity=0.708 Sum_probs=103.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 45568999999999999999999999999888788888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
+++|||++++.+++.+..|+..+.... .+.|+++..+
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~n 138 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 999999999999999999999998764 4566655544
No 37
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.92 E-value=6.2e-24 Score=139.95 Aligned_cols=116 Identities=40% Similarity=0.711 Sum_probs=102.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
+...+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 44679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCcccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRF 122 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~ 122 (133)
++|||++++.+++.+..|+..+.... .+.|+++..+
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 127 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGN 127 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999999999999999997764 4666655544
No 38
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.92 E-value=3.6e-24 Score=140.01 Aligned_cols=115 Identities=41% Similarity=0.700 Sum_probs=96.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|++|||||||++++.++++...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999888788888888878888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
|||++++++++.+..|+..+.+.. ++.|+++..+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 117 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 117 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 999999999999999999998875 46676665543
No 39
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.92 E-value=6.4e-24 Score=141.47 Aligned_cols=118 Identities=28% Similarity=0.567 Sum_probs=101.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF-SQTLAVNDA---------TVKFEIWDTAGQERYHSL 75 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~d~~g~~~~~~~ 75 (133)
+....+||+++|++|||||||++++.++.+...+.++.+.++. ...+..++. .+.+.+||++|++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4567899999999999999999999999888878888888776 556666655 789999999999999888
Q ss_pred ccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 76 ~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
+..+++.+|++++|||++++.+++.+..|+..+..+. ++.|+++..+.
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNK 136 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEEC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 8999999999999999999999999999999998876 46666665443
No 40
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.92 E-value=1.5e-23 Score=139.01 Aligned_cols=115 Identities=28% Similarity=0.495 Sum_probs=100.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999988877777776544 455677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhCCCccccccccc
Q 032789 88 IVYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~ 123 (133)
+|||++++.+++++. .|+..+.+..++.|+++.++.
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 118 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 118 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEEC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEc
Confidence 999999999999997 799999988778887766554
No 41
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.92 E-value=2.6e-24 Score=142.14 Aligned_cols=118 Identities=37% Similarity=0.700 Sum_probs=89.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccccC
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
.....+||+++|++|||||||++++.++.+...+.++.+.++....+..+ +....+.+||++|++++...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 34578999999999999999999999999888888888888877777776 55689999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhC-----CCccccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQG-----IHIQSLLQRFF 123 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~~l~~~~ 123 (133)
++++|||++++.+++.+..|+..+..+. ++.|+++..+.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 9999999999999999999999997754 55666665543
No 42
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.92 E-value=7.8e-24 Score=140.42 Aligned_cols=117 Identities=27% Similarity=0.453 Sum_probs=102.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
.....+||+++|++|||||||++++..+.+...+.++.+..+ ......++..+.+.+||++|++++...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 355789999999999999999999999988888888887766 6777788888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
+++|||++++++|+.+..|+..+.+. ..+.|+++.++.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 132 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 132 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 99999999999999999999999764 356676665543
No 43
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.92 E-value=1.1e-23 Score=139.03 Aligned_cols=119 Identities=24% Similarity=0.421 Sum_probs=101.3
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 032789 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (133)
Q Consensus 4 ~~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 83 (133)
..+....+||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++...+..+++.+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 455668899999999999999999999999888888888877654 6677788888999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 84 AAAIIVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 84 ~~iv~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
|++++|||++++++++.+..|+..+.+. ..+.|+++..+.
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 123 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEEC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 9999999999999999999999998543 245566555443
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.92 E-value=2.3e-24 Score=142.19 Aligned_cols=105 Identities=33% Similarity=0.550 Sum_probs=95.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECC-eEEEEEEEeCCCcccccccccccccccCE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
..+.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++ ..+.+.+||++|++++...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45689999999999999999999999988777778888777788888775 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQ 111 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~ 111 (133)
+++|||++++++++++..|+..+.+.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~ 108 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKV 108 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999774
No 45
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.91 E-value=1.9e-24 Score=147.85 Aligned_cols=120 Identities=33% Similarity=0.586 Sum_probs=108.1
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
......+||+++|++|||||||+++++.+.+...+.++.+.++.......++..+.+.+||++|++.+...+..+++.+|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34567899999999999999999998888777777888888888888888888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
++++|||++++.+|+.+..|+..+.+..++.|+++.++..
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~ 129 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 9999999999999999999999999988888888766543
No 46
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=3.4e-24 Score=144.42 Aligned_cols=118 Identities=34% Similarity=0.606 Sum_probs=92.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+....+||+++|+++||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34568999999999999999999999999887788888888888888888888999999999999998888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
+++|||++++.+++.+..|+..+.+.. ++.|+++.++.
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK 142 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNK 142 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEEC
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 999999999999999999999998764 45666655443
No 47
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.91 E-value=1.1e-23 Score=140.69 Aligned_cols=113 Identities=19% Similarity=0.345 Sum_probs=96.1
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
.++...+||+++|++|||||||++++..+.+...+.++.+ .+ ...+.+++..+.+.+||++|++++. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 3566799999999999999999999999998877777643 33 4777888888999999999998876 788899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhC--CCcccccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFFS 124 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~~ 124 (133)
++++|||++++++|+.+..|+..+.+.. ++.|+++.++..
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 129 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 9999999999999999999999998764 567777766543
No 48
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.91 E-value=2.2e-23 Score=140.75 Aligned_cols=116 Identities=30% Similarity=0.543 Sum_probs=101.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++.++.+...+.++.+.++. ..+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 456899999999999999999999999988877788777654 3466778889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhCCCccccccccc
Q 032789 87 IIVYDITNQASFERA-KKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
++|||++++++++++ ..|+..+.+..++.|+++..+.
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 138 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 138 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 999999999999999 6899999988777777665543
No 49
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.91 E-value=7.4e-24 Score=143.05 Aligned_cols=117 Identities=37% Similarity=0.666 Sum_probs=93.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 45689999999999999999999999988887888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
++|||++++.+++.+..|+..+.... ++.|+++.++.
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 139 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 139 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 99999999999999999999997764 56666665543
No 50
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.91 E-value=1.8e-23 Score=141.57 Aligned_cols=118 Identities=26% Similarity=0.441 Sum_probs=98.6
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
......+||+++|++|||||||++++..+.+...+.++.+. .....+..++..+.+.+||++|++++...+..+++.+|
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTD 103 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 34567899999999999999999999999888777777754 34556667778889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHHHhCCCccccccccc
Q 032789 85 AAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~ 123 (133)
++++|||++++.+|+++. .|+..+.+..++.|+++.++.
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 143 (204)
T 4gzl_A 104 VFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143 (204)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 999999999999999997 899999998888887776654
No 51
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.7e-23 Score=141.75 Aligned_cols=117 Identities=38% Similarity=0.686 Sum_probs=102.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++.+.++...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45678999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCC-Cccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGI-HIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~ 123 (133)
++|||++++.+++.+..|+..+.+..+ +.|+++..+.
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 134 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 134 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 999999999999999999999988754 5666665543
No 52
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=141.80 Aligned_cols=117 Identities=26% Similarity=0.393 Sum_probs=95.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+....+||+++|++|||||||++++.++.+...+.++.+..+ ......++..+.+.+||++|++++...+..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 345789999999999999999999999999888888887765 5556666677899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
+++|||++++++|+.+..|+..+.+.. ++.|+++.++.
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 138 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 999999999999999999999997762 45566655443
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=2e-23 Score=139.93 Aligned_cols=116 Identities=47% Similarity=0.800 Sum_probs=100.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeE----------------------------
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT---------------------------- 58 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 58 (133)
....+||+++|+++||||||++++++..+...+.++.+.++....+..++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3467999999999999999999999999888888888888877777766544
Q ss_pred ---------EEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 59 ---------VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 59 ---------~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
..+.+||++|++.+...+..+++.+|++++|||++++.+++.+..|+..+.++.. .|+++..+.
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK 156 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANK 156 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEEC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEEC
Confidence 8999999999999999999999999999999999999999999999999988655 666555543
No 54
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=143.67 Aligned_cols=117 Identities=31% Similarity=0.570 Sum_probs=81.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
..+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34679999999999999999999999888777777775543 55667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhCCCcccccccccc
Q 032789 87 IIVYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
++|||++++.+|+++. .|+..+.+..++.|+++.++..
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 148 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKT 148 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 9999999999999997 7999999888888887765543
No 55
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=9e-25 Score=146.32 Aligned_cols=118 Identities=36% Similarity=0.638 Sum_probs=105.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+....+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 45578999999999999999999999998888888888888888888888778999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
+++|||++++++|+.+..|+..+.+.. ++.|+++.++.
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 137 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 137 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 999999999999999999999998876 56777666543
No 56
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=4.3e-23 Score=139.85 Aligned_cols=115 Identities=30% Similarity=0.544 Sum_probs=94.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
..++||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 46789999999999999999999999888777777776554 34667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhCCCccccccccc
Q 032789 88 IVYDITNQASFERA-KKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
+|||++++++++++ ..|+..+.+..++.|+++..+.
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 138 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANK 138 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 99999999999999 6899999988777777766554
No 57
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.91 E-value=4.9e-24 Score=143.67 Aligned_cols=119 Identities=23% Similarity=0.255 Sum_probs=95.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-cccccccccC
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAA 84 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-~~~~~~~~~~ 84 (133)
+....+||+++|++|||||||++++.+......+.++.+.+.....+.+++..+.+.+||++|++.+.. .+..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 455789999999999999999999976544333445556666677778888889999999999987764 6677889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhC--CCcccccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFFS 124 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~~ 124 (133)
++++|||++++++|+.+..|+..+.... .+.|+++.++..
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 140 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeech
Confidence 9999999999999999999999998865 467777666543
No 58
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.91 E-value=2.4e-23 Score=135.77 Aligned_cols=113 Identities=29% Similarity=0.502 Sum_probs=97.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
+.+||+++|++|||||||++++.++.+...+.++.+..+ ......++..+.+.+||++|++++...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999988887878877654 3556667778999999999999999998999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh--CCCcccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRF 122 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~ 122 (133)
|||++++++++.+..|+..+.+. .++.|+++..+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 116 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEE
Confidence 99999999999999999999775 34666665544
No 59
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.91 E-value=2.3e-23 Score=136.33 Aligned_cols=115 Identities=23% Similarity=0.259 Sum_probs=85.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-cccccccccCEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAAAAII 88 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-~~~~~~~~~~~iv~ 88 (133)
.+||+++|++|||||||++++.+..+...+..+.+.+.....+..++..+.+.+||++|++++.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 57999999999999999999998776665556666777777888888899999999999998876 67777899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCC--Ccccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQGI--HIQSLLQRFFS 124 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~l~~~~~ 124 (133)
|||++++++|+.+..|+..+.+..+ +.|+++.++..
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence 9999999999999999999988765 67777665543
No 60
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.90 E-value=5e-24 Score=141.01 Aligned_cols=116 Identities=33% Similarity=0.536 Sum_probs=85.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
..+.+||+++|+++||||||++++..+.+...+.++.+..+. ..+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 356799999999999999999999999887777777664432 2334455667889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhCCCccccccccc
Q 032789 87 IIVYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~ 123 (133)
++|||++++++++++. .|+..+.+..++.|+++.++.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 121 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTK 121 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9999999999999998 799999988778887776554
No 61
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.90 E-value=2e-24 Score=145.58 Aligned_cols=117 Identities=43% Similarity=0.742 Sum_probs=100.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 45789999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCC-Cccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGI-HIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~ 123 (133)
++|||++++.+|+.+..|+..+..... +.|+++..+.
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK 147 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 147 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEEC
Confidence 999999999999999999999977653 5666665443
No 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.90 E-value=4.9e-23 Score=136.02 Aligned_cols=110 Identities=25% Similarity=0.326 Sum_probs=91.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|++|||||||++++.++.+.. +.++.+..+ ...+.+++..+.+.+||++|+++ ..+++.+|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999998876 667776544 66677788889999999999887 45788899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh----CCCcccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQ----GIHIQSLLQRFFS 124 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~~l~~~~~ 124 (133)
+|||++++++|+.+..|++.+.+. .++.|+++.++..
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 118 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 999999999999999987666543 2577877776654
No 63
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.90 E-value=5.6e-24 Score=143.45 Aligned_cols=116 Identities=26% Similarity=0.485 Sum_probs=73.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCcccCceeeeEEEEEEEECCe--EEEEEEEeCCCccccccccccccccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDA--TVKFEIWDTAGQERYHSLAPMYYRGA 83 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~d~~g~~~~~~~~~~~~~~~ 83 (133)
...+||+++|++|||||||++++.++ .+...+.++.+.++....+.+++. .+.+.+||++|++++...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999998 777777788887777777888776 88999999999999988899999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhCC----Cccccccccc
Q 032789 84 AAAIIVYDITNQASFERAKKWVQELQAQGI----HIQSLLQRFF 123 (133)
Q Consensus 84 ~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~l~~~~ 123 (133)
|++++|||++++.+|+.+..|+..+..+.+ +.|+++.++.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 999999999999999999999999988765 6676665543
No 64
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.90 E-value=4e-23 Score=136.92 Aligned_cols=117 Identities=27% Similarity=0.461 Sum_probs=98.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+....+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 345679999999999999999999999988877777776654 4556677878899999999999998888999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCC--Cccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQGI--HIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~l~~~~ 123 (133)
+++|||++++++++.+..|+..+.+... +.|+++..+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 132 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 9999999999999999999999988754 5666555443
No 65
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.90 E-value=4.9e-23 Score=138.74 Aligned_cols=116 Identities=27% Similarity=0.454 Sum_probs=100.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 44678999999999999999999999988887777777654 45667788888999999999999988889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCC--Cccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGI--HIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~l~~~~ 123 (133)
++|||++++++|+.+..|+..+.+... +.|+++..+.
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 128 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEec
Confidence 999999999999999999999988764 6676665543
No 66
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.90 E-value=6.4e-24 Score=144.59 Aligned_cols=117 Identities=32% Similarity=0.599 Sum_probs=100.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCe----------EEEEEEEeCCCccccccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKFEIWDTAGQERYHSL 75 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~d~~g~~~~~~~ 75 (133)
.....+||+++|+++||||||++++.++.+...+.++.+.++....+.+++. .+.+.+||++|++++...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3467899999999999999999999999888777788888777777776655 789999999999999888
Q ss_pred ccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC--CCcccccccc
Q 032789 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRF 122 (133)
Q Consensus 76 ~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~ 122 (133)
+..+++.+|++++|||++++.+++.+..|+..+.... .+.|+++..+
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 8999999999999999999999999999999887654 5666665544
No 67
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.90 E-value=5.4e-23 Score=133.89 Aligned_cols=114 Identities=27% Similarity=0.470 Sum_probs=95.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999988877777776654 4456678888899999999999998888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCC--Cccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQGI--HIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~l~~~~ 123 (133)
|||++++++++.+..|+..+.+... +.|+++..+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 118 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 9999999999999999999988754 5666655443
No 68
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.90 E-value=9.9e-23 Score=132.53 Aligned_cols=114 Identities=32% Similarity=0.506 Sum_probs=97.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
+.+||+++|++|||||||++++.++.+...+.++.+.. ....+..++....+.+||++|++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46899999999999999999999998887777777644 36667778888899999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
|||++++++++.+..|+..+.+.. .+.|+++..+.
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 999999999999999999998764 45666655443
No 69
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.90 E-value=8e-24 Score=141.44 Aligned_cols=119 Identities=21% Similarity=0.269 Sum_probs=94.5
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcc-----------cCceeeeEEEEEE-EECCeEEEEEEEeCCCcccc
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----------ESTIGAAFFSQTL-AVNDATVKFEIWDTAGQERY 72 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~d~~g~~~~ 72 (133)
......+||+++|++|||||||++.+. +.+...+ .++.+.++....+ ..++..+.+.+||++|++++
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 355678999999999999999996554 4444432 3455555544444 45667889999999999999
Q ss_pred cccccccccccCEEEEEEECC------ChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 73 HSLAPMYYRGAAAAIIVYDIT------NQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 73 ~~~~~~~~~~~~~iv~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
...+..+++.+|++++|||++ +.++|+++..|+..+....++.|+++.++..
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~ 145 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKR 145 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECT
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEch
Confidence 999999999999999999999 6788889999999996666788887766543
No 70
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.90 E-value=1.4e-22 Score=135.86 Aligned_cols=114 Identities=20% Similarity=0.325 Sum_probs=90.5
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 83 (133)
.+.....||+++|+++||||||++++.++.+.. .+.++.+... ..+.. ..+.+.+||++|++++...+..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEK--GRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEe--CCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 356678999999999999999999999999887 7778887443 33333 348999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhC---------CCcccccccc
Q 032789 84 AAAIIVYDITNQASFERAKKWVQELQAQG---------IHIQSLLQRF 122 (133)
Q Consensus 84 ~~iv~v~d~~~~~s~~~~~~~~~~i~~~~---------~~~~~~l~~~ 122 (133)
|++|+|||++++++|+++..|+..+.++. ++.|+++.++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~N 135 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFAN 135 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEE
Confidence 99999999999999999999999987651 2566665544
No 71
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=133.78 Aligned_cols=114 Identities=28% Similarity=0.388 Sum_probs=86.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc--ccccccccccccCEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLAPMYYRGAAAA 86 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--~~~~~~~~~~~~~~i 86 (133)
..+||+++|++|||||||++++.+..+...+ ++.+.++....+.+++..+.+.+||++|++. +......+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 5789999999999999999999998876544 4566677777788888889999999999987 455667788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
++|||++++++|+.+..|+..+.+. .++.|+++.++.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK 120 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEC
Confidence 9999999999999999999999875 346666665543
No 72
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1e-22 Score=136.80 Aligned_cols=115 Identities=31% Similarity=0.445 Sum_probs=96.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++.++++...+.++.+..+ ...+..++..+.+.+||++|+++ ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 45679999999999999999999999998887878877654 45567788889999999999988 66778889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
++|||++++++|+++..|+..+.+.. ++.|+++.++.
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 141 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNK 141 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEC
Confidence 99999999999999999999997753 56666665543
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.89 E-value=4e-22 Score=132.95 Aligned_cols=115 Identities=25% Similarity=0.462 Sum_probs=86.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|.+|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 34679999999999999999999999988777777665543 45667778888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCC--Ccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQGI--HIQSLLQRF 122 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~l~~~ 122 (133)
++|||++++.+++++..|+..+..... +.|+++..+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~n 134 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 999999999999999999999987643 556555544
No 74
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.3e-22 Score=132.71 Aligned_cols=114 Identities=29% Similarity=0.425 Sum_probs=95.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|++|||||||++++.++.+...+.++.+..+ ......++..+.+.+||++|++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999988777777776544 3445667778899999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC---CCccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG---IHIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~l~~~~ 123 (133)
|||++++++++++..|+..+.+.. ++.|+++..+.
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEc
Confidence 999999999999999998887653 45666555443
No 75
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.89 E-value=1.6e-23 Score=139.62 Aligned_cols=115 Identities=23% Similarity=0.476 Sum_probs=87.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC--CCCCcccCceeeeEEEEEEEE---CCeEEEEEEEeCCCcccccccccccccccC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 84 (133)
++||+++|++|||||||++++.+. .+...+.++.+.++....+.. ++..+.+.+||++|++++...+..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999984 455566778887776655443 234678999999999999888888999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 85 AAIIVYDITNQ-ASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 85 ~iv~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
++++|||++++ .+++.+..|+..+.+..++.|+++.++..
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~ 122 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECC
Confidence 99999999997 68999999999998887888888876543
No 76
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.89 E-value=2.4e-22 Score=130.39 Aligned_cols=113 Identities=27% Similarity=0.497 Sum_probs=96.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|++|||||||++++.++.+...+.++.+.. ....+..++..+.+.+||++|++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 35899999999999999999999998877777776554 35566777888899999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCC--Ccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQGI--HIQSLLQRF 122 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~l~~~ 122 (133)
|||++++++++++..|+..+.+..+ +.|+++..+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~n 116 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 9999999999999999999987654 566655544
No 77
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.89 E-value=2e-22 Score=131.49 Aligned_cols=112 Identities=23% Similarity=0.291 Sum_probs=74.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEE
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v 89 (133)
.+||+++|++|||||||++++.+..... ..++.+.++ ...+..++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 5799999999999999999998766543 334555544 45667788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 90 YDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
||++++++|+.+..|+..+.+. .++.|+++.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 115 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 115 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEec
Confidence 9999999999999999999875 356677666544
No 78
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.89 E-value=4.3e-22 Score=132.23 Aligned_cols=115 Identities=26% Similarity=0.474 Sum_probs=96.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
+..+||+++|++|||||||++++.++.+...+.++.+. .....+..++..+.+.+||++|++++...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 46899999999999999999999999888777777754 44566677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
+|||++++++++.+..|+..+.+.. ++.|+++..+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK 118 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNK 118 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 9999999999999999999998754 45666665543
No 79
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.2e-22 Score=136.15 Aligned_cols=117 Identities=26% Similarity=0.407 Sum_probs=96.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+....+||+++|+++||||||++++.++.+...+.++.+..+ ......++..+.+.+||++|++++...+..+++.+|+
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 445679999999999999999999999988877777776544 3455667778899999999999998888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC---CCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG---IHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~l~~~~ 123 (133)
+++|||++++.+++++..|+..+.+.. ++.|+++..+.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK 123 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 999999999999999999988876643 45666655543
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.89 E-value=7.7e-23 Score=139.34 Aligned_cols=118 Identities=31% Similarity=0.574 Sum_probs=97.5
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccc
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGA 83 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 83 (133)
..+...+||+++|++|||||||++++.++.+...+.++.+.+......... +..+.+.+||++|++++...+..+++.+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 345678999999999999999999999988887777888776666655554 3448999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhCCC-cccccccc
Q 032789 84 AAAIIVYDITNQASFERAKKWVQELQAQGIH-IQSLLQRF 122 (133)
Q Consensus 84 ~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~l~~~ 122 (133)
|++++|||++++.+++.+..|+..+...... .|+++.++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 125 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEE
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 9999999999999999999999999877543 56655544
No 81
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.89 E-value=3.9e-22 Score=132.64 Aligned_cols=111 Identities=23% Similarity=0.346 Sum_probs=92.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|++|||||||++++.++. ...+.++.+.. ...+..++ ..+.+||++|++++...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 578999999999999999999999888 55666777643 34455554 89999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
+|||++++++++++..|+..+.++ .++.|+++..+.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 128 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANK 128 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeC
Confidence 999999999999999999998765 356676665543
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.89 E-value=3.1e-22 Score=133.73 Aligned_cols=113 Identities=27% Similarity=0.372 Sum_probs=94.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|+++||||||++++.++.+...+.++.+.++.. +... .+.+.+||++|++++...+..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 4468999999999999999999999998887777888766542 3333 48999999999999998889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
++|||++++++++.+..|+..+.++ ..+.|+++.++.
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 133 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 133 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEEC
Confidence 9999999999999999999998764 356666655443
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.88 E-value=3.9e-22 Score=133.21 Aligned_cols=112 Identities=22% Similarity=0.316 Sum_probs=91.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCC-CCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ-FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
..+.+||+++|++|||||||++++.++. +...+.++.+. ....+..++ ..+.+||++|++++...+..+++.+|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 4568999999999999999999999887 55566666663 444555554 799999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC----CCcccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQG----IHIQSLLQRF 122 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~~l~~~ 122 (133)
+++|||++++++++++..|+..+.+.. .+.|+++..+
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~n 134 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEe
Confidence 999999999999999999999997753 4566665544
No 84
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.88 E-value=2.6e-22 Score=133.23 Aligned_cols=113 Identities=22% Similarity=0.376 Sum_probs=91.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 85 (133)
+..+.+||+++|+++||||||++++.++.+ ..+.++.+... ..+.+++ ..+.+||++|++++...+..+++.+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 455789999999999999999999999887 44556666543 3444555 899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 86 AIIVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 86 iv~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
+++|||++++++|+++..|+..+.+. ..+.|+++..+.
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 131 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 131 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEEC
Confidence 99999999999999999999998765 366666665543
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.2e-22 Score=134.10 Aligned_cols=111 Identities=23% Similarity=0.398 Sum_probs=88.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
.+.+||+++|+++||||||++++.++.+. .+.++.+.. ...+.+++ ..+.+||++|++++...+..+++.+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988776 556666643 33444554 89999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
+|||++++++|+++..|+..+.++ ..+.|+++..+.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 126 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 126 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEEC
Confidence 999999999999999999999875 356676665543
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=1.3e-21 Score=128.03 Aligned_cols=111 Identities=22% Similarity=0.360 Sum_probs=91.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
.+.+||+++|++|||||||++++..+.+.. +.++.+.. ...+.++ ...+.+||++|++++...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 457899999999999999999999988754 55666543 3445555 489999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
+|||++++++|+++..|+..+.+.. ++.|+++..+.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 117 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 117 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEEC
Confidence 9999999999999999999887652 56666665543
No 87
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.1e-21 Score=134.15 Aligned_cols=117 Identities=26% Similarity=0.311 Sum_probs=92.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc-cccccccccccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGA 83 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~~~~~~~~~~ 83 (133)
....+||+++|++|||||||+++|.+.. +...+ ++.+.++....+.+++..+.+.+||++|++. +......+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 4467999999999999999999999643 33333 4566677777788888889999999999876 444556778889
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHh--CCCcccccccccc
Q 032789 84 AAAIIVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFFS 124 (133)
Q Consensus 84 ~~iv~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~ 124 (133)
+++++|||+++++||+.+..|...+.+. .++.|++++++..
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 9999999999999999999999988763 3577877776543
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.87 E-value=2.6e-21 Score=129.66 Aligned_cols=111 Identities=21% Similarity=0.303 Sum_probs=91.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
.+.+||+++|++|||||||++++.++.+.. +.++.+.. ...+.+++ +.+.+||++|++++...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 456799999999999999999999988753 55666653 45556666 89999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
+|||++++++|+++..|+..+.+. .++.|+++.++.
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 133 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNK 133 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEEC
Confidence 999999999999999999998764 356676665554
No 89
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=5.3e-22 Score=129.23 Aligned_cols=108 Identities=20% Similarity=0.395 Sum_probs=88.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEE
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~ 90 (133)
+||+++|++|||||||++++.++.+.. +.++.+.. ...+... .+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888764 45666633 3333333 478999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 91 DITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
|++++++|+.+..|+..+... .++.|+++.++.
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 110 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEEC
Confidence 999999999999999998764 356676666543
No 90
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.87 E-value=3.8e-21 Score=129.52 Aligned_cols=114 Identities=41% Similarity=0.772 Sum_probs=97.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45789999999999999999999999888778888888888888888988899999999999999888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC-CCccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQG-IHIQSLLQR 121 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~ 121 (133)
+|||++++.+++++..|+..+.... .+.|+++..
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~ 117 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 117 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 9999999999999999999887654 355555443
No 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.87 E-value=8.2e-22 Score=132.96 Aligned_cols=111 Identities=18% Similarity=0.253 Sum_probs=84.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
.+..||+++|++|||||||++++.++++. .+.++.+.. ...+.+++ ..+.+||++|++++...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988764 355666554 34455565 89999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
+|||++++++|+++..|+..+.+. ..+.|+++.++.
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 135 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNK 135 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEEC
Confidence 999999999999999999999764 356777666554
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.87 E-value=7.2e-22 Score=132.56 Aligned_cols=112 Identities=20% Similarity=0.398 Sum_probs=86.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
..+.+||+++|++|||||||++++..+.+.. +.++.+ +....+...+ +.+.+||++|++++...+..+++.+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3567999999999999999999999887753 445555 3334444444 8999999999999998888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
++|||++++++|+++..|+..+.+.. ++.|+++.++.
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK 139 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 139 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEEC
Confidence 99999999999999999999987642 46666665543
No 93
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.87 E-value=5.4e-22 Score=133.40 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=88.5
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEE--EEEEC-CeEEEEEEEeCCCcccccccc---cc
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ--TLAVN-DATVKFEIWDTAGQERYHSLA---PM 78 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~l~d~~g~~~~~~~~---~~ 78 (133)
.+..+.+||+++|+++||||||++++.+. +... ++.+.++... ...+. +..+.+.+||++|+++|.... ..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 45667899999999999999999987664 3332 3333333222 22232 556899999999999987766 78
Q ss_pred cccccCEEEEEEECCCh--hhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 79 YYRGAAAAIIVYDITNQ--ASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 79 ~~~~~~~iv~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+++.+|++|+|||++++ ++++.+..|+..+....++.|+++.++...
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 140 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVD 140 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccc
Confidence 99999999999999997 788888899999887788999888776543
No 94
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.87 E-value=3.5e-21 Score=129.35 Aligned_cols=116 Identities=26% Similarity=0.306 Sum_probs=90.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccccC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAA 84 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~~~~~~~~~~~ 84 (133)
...+||+++|++|||||||++++.+.. +...+ ++.+.++....+.+++..+.+.+||++|++. +......+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 356899999999999999999999633 33333 4466666677788888888999999999876 4456677788899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHh--CCCcccccccccc
Q 032789 85 AAIIVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFFS 124 (133)
Q Consensus 85 ~iv~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~ 124 (133)
++++|||+++++||+.+..|...+.+. .++.|+++.++..
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 999999999999999999999988764 3567877776644
No 95
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.87 E-value=8.5e-21 Score=127.31 Aligned_cols=115 Identities=40% Similarity=0.750 Sum_probs=100.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
....+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 34678999999999999999999999988888888999888888888998888999999999999988888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCccccccc
Q 032789 87 IIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQR 121 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~ 121 (133)
++|||+++..+|+++..|+..+.+.. .+.|+++..
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~ 141 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 99999999999999999999887653 345554443
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.87 E-value=5.6e-21 Score=137.15 Aligned_cols=115 Identities=26% Similarity=0.451 Sum_probs=100.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
..+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999988887777776544 5566778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhCCCcccccccccc
Q 032789 89 VYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|||++++.+|+.+. .|+..+....++.|+++.++..
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 269 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEch
Confidence 99999999999997 8999999887788877765543
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.78 E-value=1e-23 Score=142.47 Aligned_cols=116 Identities=28% Similarity=0.489 Sum_probs=98.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
..+.+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 45789999999999999999999999888777766665443 44455666678899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhCCCccccccccc
Q 032789 87 IIVYDITNQASFERAK-KWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 87 v~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~l~~~~ 123 (133)
++|||++++++++++. .|+..+.+..++.|+++.++.
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK 143 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143 (204)
Confidence 9999999999999997 899999887667776665543
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.86 E-value=8.6e-22 Score=130.99 Aligned_cols=111 Identities=21% Similarity=0.331 Sum_probs=89.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|++|||||||++++.++.+. .+.++.+. ....+..++ +.+.+||++|++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999987543 34566663 334455554 88999999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
+|||++++++|+++..|+..+.+. ..+.|+++.++.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 126 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEEC
Confidence 999999999999999999888654 356676665543
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=8.7e-22 Score=130.40 Aligned_cols=111 Identities=27% Similarity=0.403 Sum_probs=88.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|++|||||||++++.++.+ ..+.++.+.. ...+.+++ ..+.+||++|++++...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5789999999999999999999998777 4455666643 34444554 89999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh--CCCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQ--GIHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~ 123 (133)
+|||++++++++++..|+..+.++ ..+.|+++..+.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 128 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANK 128 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEEC
Confidence 999999999999999999999765 366676665543
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.86 E-value=1.9e-21 Score=129.70 Aligned_cols=111 Identities=25% Similarity=0.383 Sum_probs=90.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
.+.+||+++|+++||||||++++..+.+.. +.++.+.. ...+..++ ..+.+||++|++++...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 468999999999999999999998877654 45566533 33444454 89999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
+|||++++++++++..|+..+.+.. ++.|+++..+.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 132 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANK 132 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEEC
Confidence 9999999999999999999887652 46666665543
No 101
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.84 E-value=1.3e-20 Score=135.16 Aligned_cols=113 Identities=18% Similarity=0.303 Sum_probs=88.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC---CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc-----cccccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----HSLAPMYY 80 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~-----~~~~~~~~ 80 (133)
..+||+++|++|||||||++++.++... ..+.++.+..+. .+.+++ .+.+.+||++|++++ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999887322 234455555444 333433 589999999999988 67788889
Q ss_pred cccCEEEEEEECCChhhHHHHHHH---HHHHHHhCCCcccccccccc
Q 032789 81 RGAAAAIIVYDITNQASFERAKKW---VQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 81 ~~~~~iv~v~d~~~~~s~~~~~~~---~~~i~~~~~~~~~~l~~~~~ 124 (133)
+.+|++++|||++++++|+++..| +..+....++.|+++.++..
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~ 125 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKM 125 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecc
Confidence 999999999999999999999766 55556667888888876544
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.83 E-value=9.7e-21 Score=136.48 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=83.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC---cccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---cccccccccCE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIE---FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---LAPMYYRGAAA 85 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~---~~~~~~~~~~~ 85 (133)
||+++|++|||||||++++.++.+.. .+.+++|.++.. ++ ..+++++||++|+++|.. ....+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999887653322 245677766543 22 348999999999999964 35788999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 86 AIIVYDITNQ--ASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 86 iv~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+|+|||++++ ++++.+.+|+..+.+..+++|+++.++..
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~ 116 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKV 116 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECc
Confidence 9999999998 55555566677777778899988887643
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.83 E-value=4.1e-20 Score=125.45 Aligned_cols=114 Identities=21% Similarity=0.245 Sum_probs=83.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCe-EEEEEEEeCCCcccccc-cccccccccC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYHS-LAPMYYRGAA 84 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~d~~g~~~~~~-~~~~~~~~~~ 84 (133)
+...+||+++|+++||||||++++.++.+...+.+ .+.++.. +.+++. .+.+.+||++|++++.. .+..+++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 45689999999999999999999999988776653 3333333 455533 58999999999999887 7788899999
Q ss_pred EEEEEEECCCh-hhHHHHHHH-HHHHHHh---CCCccccccccc
Q 032789 85 AAIIVYDITNQ-ASFERAKKW-VQELQAQ---GIHIQSLLQRFF 123 (133)
Q Consensus 85 ~iv~v~d~~~~-~s~~~~~~~-~~~i~~~---~~~~~~~l~~~~ 123 (133)
++++|||+++. .++.++..| ...+... .++.|+++.++.
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 124 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEC
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEEC
Confidence 99999999995 356666554 4444432 345676665543
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.81 E-value=1.8e-19 Score=118.58 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=74.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 86 (133)
..+.+||+++|++|||||||++++.++.+...+.++.+.+.....+..++ ..+.+||++|++++...+...++.+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 45688999999999999999999999988876666665555555666666 5678999999999999999999999999
Q ss_pred EEEEECCCh
Q 032789 87 IIVYDITNQ 95 (133)
Q Consensus 87 v~v~d~~~~ 95 (133)
++|||++++
T Consensus 83 i~v~d~~~~ 91 (178)
T 2lkc_A 83 ILVVAADDG 91 (178)
T ss_dssp EEEEETTCC
T ss_pred EEEEECCCC
Confidence 999999984
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.81 E-value=9.2e-21 Score=132.67 Aligned_cols=119 Identities=19% Similarity=0.222 Sum_probs=84.9
Q ss_pred CCceeeEEEEEcCC---------CCCHHHHHHHHHh---CCCCCcccCce-eeeEEEEEE--------------EECCeE
Q 032789 6 NKNINAKLVLLGDV---------GAGKSSLVLRFVK---GQFIEFQESTI-GAAFFSQTL--------------AVNDAT 58 (133)
Q Consensus 6 ~~~~~~ki~i~G~~---------~vGKTsli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~ 58 (133)
.....+||+++|++ |||||||++++.+ ..+...+.++. +.++....+ ..++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35567999999999 9999999999998 55666565554 333222211 134566
Q ss_pred EEEEEEe-----------------------CCCccccccccccccc---------------------ccCEEEEEEECCC
Q 032789 59 VKFEIWD-----------------------TAGQERYHSLAPMYYR---------------------GAAAAIIVYDITN 94 (133)
Q Consensus 59 ~~~~l~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~iv~v~d~~~ 94 (133)
+.+++|| ++|++++...+..+++ ++|++++|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 6677777777777777 7999999999999
Q ss_pred h--hhHHHHHHHHHHHHHh--CCCcccccccccc
Q 032789 95 Q--ASFERAKKWVQELQAQ--GIHIQSLLQRFFS 124 (133)
Q Consensus 95 ~--~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~ 124 (133)
+ +||+.+..|+..+.+. .++.|++++++..
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~ 208 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKC 208 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcc
Confidence 8 9999999999999765 3567777665543
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=3.3e-19 Score=134.91 Aligned_cols=112 Identities=24% Similarity=0.426 Sum_probs=92.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
...+||+++|.+|||||||++++.++.+.. +.++.+..+. .+... .+.+.+||++|++.+...+..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEESS--SCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEeC--CEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999988654 4466665443 33333 479999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC--CCcccccccccc
Q 032789 88 IVYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFFS 124 (133)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~~ 124 (133)
+|||++++++|+++..|+..+.+.. .+.|+++.++..
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 433 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 433 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECC
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECC
Confidence 9999999999999999999986643 467776665543
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=131.50 Aligned_cols=110 Identities=20% Similarity=0.402 Sum_probs=84.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
+.+||+++|.++||||||++++.++.+...+ ++.+..+ ..+...+ +.+.+||++|++.+...+..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5679999999999999999999988875533 4554433 3333444 899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
|||++++.+|+.+..|+..+..+. ++.|++++++.
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK 275 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 275 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEEC
Confidence 999999999999998888886643 57777766553
No 108
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.4e-19 Score=120.76 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=79.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCC---cccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc-
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE---FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG- 82 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~- 82 (133)
....++|+++|++|||||||++++.+..+.. .+.++.+. +.....+.+||++|++.+...+..+++.
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 3567899999999999999999999987643 11122211 1134678999999999987777777766
Q ss_pred ---cCEEEEEEECC-ChhhHHHHHHHHHHHHHh-----CCCcccccccc
Q 032789 83 ---AAAAIIVYDIT-NQASFERAKKWVQELQAQ-----GIHIQSLLQRF 122 (133)
Q Consensus 83 ---~~~iv~v~d~~-~~~s~~~~~~~~~~i~~~-----~~~~~~~l~~~ 122 (133)
+|++++|||++ ++++++++..|+..+... .++.|+++..+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 164 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 164 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEE
Confidence 89999999999 899999999998888653 24566655544
No 109
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=1.2e-19 Score=123.44 Aligned_cols=107 Identities=16% Similarity=0.230 Sum_probs=84.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCC---cccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc-
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE---FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG- 82 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~- 82 (133)
....+||+++|++|||||||++++.+..+.. .+.++.+.++ ....+.+||++|++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4567899999999999999999999987654 2333333322 34688999999999998877778777
Q ss_pred ---cCEEEEEEECC-ChhhHHHHHHHHHHHHHh-----CCCcccccccc
Q 032789 83 ---AAAAIIVYDIT-NQASFERAKKWVQELQAQ-----GIHIQSLLQRF 122 (133)
Q Consensus 83 ---~~~iv~v~d~~-~~~s~~~~~~~~~~i~~~-----~~~~~~~l~~~ 122 (133)
+|++++|+|++ ++++|+.+..|+..+... .++.|+++..+
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEE
Confidence 89999999999 889999999999888664 24566665544
No 110
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.77 E-value=3.8e-18 Score=111.68 Aligned_cols=108 Identities=17% Similarity=0.107 Sum_probs=75.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc------cccccc-
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYYR- 81 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~------~~~~~~- 81 (133)
..+||+++|++|||||||++++.+..+...+.++.+.+.....+..++ ..+.+||++|++++... ...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 358999999999999999999998776544445444444445555555 68999999999877532 234443
Q ss_pred -ccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 82 -GAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 82 -~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
++|++++|+|.++.+ ....|+..+.+. +.|+++..+.
T Consensus 80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~~--~~p~ilv~nK 117 (165)
T 2wji_A 80 EKPDLVVNIVDATALE---RNLYLTLQLMEM--GANLLLALNK 117 (165)
T ss_dssp HCCSEEEEEEETTCHH---HHHHHHHHHHHT--TCCEEEEEEC
T ss_pred CCCCEEEEEecCCchh---HhHHHHHHHHhc--CCCEEEEEEc
Confidence 799999999999854 345688887763 5566655543
No 111
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.77 E-value=2.2e-18 Score=113.70 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=80.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~--------~~~ 79 (133)
...||+++|++|||||||++++.+.... ....++.+.++....+.+++ ..+.+||++|++++.... ...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4579999999999999999999987642 12223444455566666776 568999999987543211 134
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
++.+|++++|||++++.+++ ...|+..+.+.. .+.|+++..+.
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK 124 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNK 124 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEEC
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEEC
Confidence 78999999999999988876 457888887765 35666665543
No 112
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=2.6e-18 Score=117.91 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=76.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccc---------ccccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------SLAPM 78 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~---------~~~~~ 78 (133)
...+||+++|++|||||||++++.++.+.....+....+.........+ ..+.+||++|+.... .....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 5689999999999999999999998876532222222223333333343 789999999983211 11233
Q ss_pred cccccCEEEEEEECCChhhHHH--HHHHHHHHHHhCCCccccccccc
Q 032789 79 YYRGAAAAIIVYDITNQASFER--AKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 79 ~~~~~~~iv~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
++..+|++++|||++++.+|+. ...|+..+....++.|++++++.
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK 151 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNK 151 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeC
Confidence 4677899999999999988753 34788888776556666665543
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.76 E-value=4.5e-18 Score=112.95 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=80.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------ccccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMY 79 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~------~~~~~ 79 (133)
++.+.+||+++|++|||||||++++.+..+...+.++.+.+.....+..++ ..+.+||++|++++.. ....+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 344679999999999999999999998766555555555555566666665 7899999999987752 23444
Q ss_pred cc--ccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccc
Q 032789 80 YR--GAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQR 121 (133)
Q Consensus 80 ~~--~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~ 121 (133)
++ .+|++++|+|.++ ++....|+..+.+. +.|+++..
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~--~~piilv~ 119 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLMEM--GANLLLAL 119 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT--TCCEEEEE
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHhc--CCCEEEEE
Confidence 43 4899999999875 66677888888763 45555443
No 114
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.76 E-value=3.8e-19 Score=135.86 Aligned_cols=115 Identities=19% Similarity=0.302 Sum_probs=86.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEE------EE--CCeEEEEEEEeCCCcccccccccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTL------AV--NDATVKFEIWDTAGQERYHSLAPM 78 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~l~d~~g~~~~~~~~~~ 78 (133)
....+||+++|.+|||||||++++.+.++...+.++.+.++..... .. ++....+.+||++|++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4578999999999999999999999999888788888877665421 11 233589999999999999999999
Q ss_pred cccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 79 ~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+++.+|++|+|||+++. +.+..|+..+.+..++.|+++.++..
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~ 160 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKI 160 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCT
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECC
Confidence 99999999999998764 56788999999988888887776544
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.73 E-value=3e-17 Score=106.15 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-------HSLAPMYYRG 82 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~-------~~~~~~~~~~ 82 (133)
.||+++|++|||||||++++.+..+. ....+....+.....+..++ ..+.+||++|+..+ ...+...++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988754 22223333444555555565 58899999998873 3344556889
Q ss_pred cCEEEEEEECCChhhH
Q 032789 83 AAAAIIVYDITNQASF 98 (133)
Q Consensus 83 ~~~iv~v~d~~~~~s~ 98 (133)
+|++++|+|++++.+.
T Consensus 80 ~~~~i~v~d~~~~~~~ 95 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQ 95 (161)
T ss_dssp CSEEEEEEESSSCCCH
T ss_pred CCEEEEEEECCCcccH
Confidence 9999999999986443
No 116
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.73 E-value=5.4e-18 Score=113.16 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=72.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSL 75 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g----------~~~~~~~ 75 (133)
+....+||+++|++|||||||++++.++.+...+.++.+.+........+. .+.+||++| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 345679999999999999999999999876655555555544444444443 689999999 6666666
Q ss_pred cccccccc---CEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 76 APMYYRGA---AAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 76 ~~~~~~~~---~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
...+++.+ |++++|+|++++.++.... ++..+.+......+++.++|.
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~p~i~v~nK~Dl 146 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKYYGIPVIVIATKADK 146 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHTTCCEEEEEECGGG
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHcCCCEEEEEECccc
Confidence 66677666 9999999999987777643 223333333333344444443
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.73 E-value=4.4e-17 Score=114.27 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=77.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc------cccc-
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA------PMYY- 80 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~------~~~~- 80 (133)
.+.+||+++|++|||||||++++.+..+.....++...+.....+...+ ..+.+||+||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4678999999999999999999998776544445555444444444444 799999999998776532 3444
Q ss_pred -cccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccc
Q 032789 81 -RGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQR 121 (133)
Q Consensus 81 -~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~ 121 (133)
..+|++++|+|.++.++. ..|..++.+. +.|+++..
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~ 117 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAM 117 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEE
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEE
Confidence 589999999999986654 3577777664 44444433
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.71 E-value=3.6e-17 Score=114.62 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----------LAPMYY 80 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~----------~~~~~~ 80 (133)
.||+++|++|||||||++++.+........++.+.+.....+..++ ..+.+||+||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999999876655556666666666666666 5899999999987654 334455
Q ss_pred --cccCEEEEEEECCChhhHHHHHHHHH
Q 032789 81 --RGAAAAIIVYDITNQASFERAKKWVQ 106 (133)
Q Consensus 81 --~~~~~iv~v~d~~~~~s~~~~~~~~~ 106 (133)
+.+|++++|+|+++.++...+..|+.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~ 107 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF 107 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH
Confidence 88999999999999777665554443
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.70 E-value=1.6e-16 Score=113.99 Aligned_cols=119 Identities=10% Similarity=0.085 Sum_probs=84.1
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCc-ccCceeeeEEEEEEEECCeEEEEEEEeCCCccccc----------
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------- 73 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~---------- 73 (133)
.+++..-.|+++|.+|||||||++++++.++... ..+.............. ....+.+|||||+.+..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 4556788999999999999999999999877531 22222222222222333 14789999999986544
Q ss_pred ccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 74 ~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
......++.+|++++|+|++++.+++....|++.+.+......++++++|.
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl 134 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDK 134 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGG
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccC
Confidence 344667889999999999999999999888999888744444444455554
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.69 E-value=8.5e-17 Score=113.67 Aligned_cols=110 Identities=17% Similarity=0.123 Sum_probs=76.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL----------APM 78 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~----------~~~ 78 (133)
++++|+++|++|||||||++++.+..+.....++.+.+.....+...+ ..+.+||+||+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999999876555556655555555555554 57889999998876632 111
Q ss_pred c--ccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 79 Y--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 79 ~--~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
+ .+.+|++++|+|.++.++... |...+.+......++++++|
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~~~p~ivv~NK~D 123 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLY---LTLQLLELGIPCIVALNMLD 123 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHHTCCEEEEEECHH
T ss_pred HHhhcCCCEEEEEecCCChHHHHH---HHHHHHhcCCCEEEEEECcc
Confidence 2 278999999999998665544 44444444333444444444
No 121
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.69 E-value=2.9e-16 Score=112.36 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=74.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc--------cccccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY--------HSLAPM 78 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~--------~~~~~~ 78 (133)
.+..+|+++|.+|||||||++++++.++.. ...+.............. ..++.+|||||..+. ......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 456789999999999999999999987753 222222111112222223 478999999998753 334456
Q ss_pred cccccCEEEEEEECCChhhHHHHHHHH-HHHHHhCCCcccccccc
Q 032789 79 YYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGIHIQSLLQRF 122 (133)
Q Consensus 79 ~~~~~~~iv~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~~~l~~~ 122 (133)
.++++|++++|+|++++.+.. ..|+ +.+.+..++.|+++..+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~N 125 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGN 125 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEE
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEE
Confidence 788999999999999875443 3454 55655544566665544
No 122
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.69 E-value=8.2e-18 Score=111.63 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=69.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG-----------QERYHSLAPMY 79 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g-----------~~~~~~~~~~~ 79 (133)
+||+++|++|||||||++++.++.+...+.++.+... ...... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999988766666544332 222222 689999999 56666666777
Q ss_pred ccc-cCEEEEEEECCChhhHHHH-HHHHH
Q 032789 80 YRG-AAAAIIVYDITNQASFERA-KKWVQ 106 (133)
Q Consensus 80 ~~~-~~~iv~v~d~~~~~s~~~~-~~~~~ 106 (133)
++. ++++++||++.|..+++++ ..|..
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~ 104 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEK 104 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhc
Confidence 777 8888888888889999887 67765
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.68 E-value=3.2e-16 Score=110.35 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=79.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYY-- 80 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~------~~~~~~-- 80 (133)
+.+||+++|++|||||||++++.+..+.....++.+.+.....+...+ ..+.+||+||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 357999999999999999999999877555666666666666666666 5699999999987765 334444
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccc
Q 032789 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFF 123 (133)
Q Consensus 81 ~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~ 123 (133)
..+|++++|+|.++.+ ....|..++.+.. ....+++.++|
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~~~p~ilv~NK~D 120 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEMEVKNIILVLNKFD 120 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHTTCCSEEEEEECHH
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhcCCCCEEEEEEChh
Confidence 6799999999998853 3445666665544 33334444444
No 124
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.67 E-value=8.6e-16 Score=107.29 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=66.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCC-CCCcccCc-eeeeEEEEEEEECCeEEEEEEEeCCCcccccccccc-----
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ-FIEFQEST-IGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM----- 78 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~----- 78 (133)
+....++|+++|.+|||||||++++++.. +...+.++ ...+........++ ..+.+|||||+..+......
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34467899999999999999999999876 43333333 33333344444454 68999999998765433222
Q ss_pred ------cccccCEEEEEEECCChhhH-HHHHHHHHHH
Q 032789 79 ------YYRGAAAAIIVYDITNQASF-ERAKKWVQEL 108 (133)
Q Consensus 79 ------~~~~~~~iv~v~d~~~~~s~-~~~~~~~~~i 108 (133)
.++.+|++|+|+|+++.... ..+..|+..+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~ 132 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEI 132 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 56889999999999862222 2233455444
No 125
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.67 E-value=5.2e-16 Score=108.83 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=72.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR----- 81 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~----- 81 (133)
...+||+++|.+|||||||++++++..... ...+..........+..++ ..+.+|||||+.++.......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 367999999999999999999999887532 1112222223333444455 69999999999887665544443
Q ss_pred ----ccCEEEEEEECCChhhHHHH-HHHHHHHHHhC
Q 032789 82 ----GAAAAIIVYDITNQASFERA-KKWVQELQAQG 112 (133)
Q Consensus 82 ----~~~~iv~v~d~~~~~s~~~~-~~~~~~i~~~~ 112 (133)
.+|++++|++++... +.+. ..|++.+.+..
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~ 146 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTF 146 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHH
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHh
Confidence 789999999998755 4444 47888887654
No 126
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=107.57 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=60.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccC--ceeeeEEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES--TIGAAFFSQTLAVNDATVKFEIWDTAGQE-----------RY 72 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~d~~g~~-----------~~ 72 (133)
+....+||+++|.+|||||||++++++..+.....+ +.+..........++ ..+.+|||||.. .+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345679999999999999999999999877654444 333333444445555 688999999943 33
Q ss_pred cccccccccccCEEEEEEECCChh
Q 032789 73 HSLAPMYYRGAAAAIIVYDITNQA 96 (133)
Q Consensus 73 ~~~~~~~~~~~~~iv~v~d~~~~~ 96 (133)
........+.+|++|+|+|+++..
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~ 126 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYT 126 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCS
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCC
Confidence 334445567789999999997643
No 127
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.65 E-value=3.3e-16 Score=104.11 Aligned_cols=99 Identities=20% Similarity=0.307 Sum_probs=68.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSL 75 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g----------~~~~~~~ 75 (133)
+....+||+++|++|||||||++++.+.... ...++.+.+........+. ++.+||++| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 4557789999999999999999999988743 2344444444333333333 578999999 5556666
Q ss_pred cccccccc---CEEEEEEECCChh--hHHHHHHHHHHH
Q 032789 76 APMYYRGA---AAAIIVYDITNQA--SFERAKKWVQEL 108 (133)
Q Consensus 76 ~~~~~~~~---~~iv~v~d~~~~~--s~~~~~~~~~~i 108 (133)
...+++.+ |++++|+|.+++. +...+..|+...
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~ 132 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL 132 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc
Confidence 56666665 8999999998763 334444555543
No 128
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.65 E-value=2.2e-16 Score=111.57 Aligned_cols=105 Identities=19% Similarity=0.133 Sum_probs=72.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYYR- 81 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~------~~~~~~~- 81 (133)
..+||+++|++|||||||++++.+........++...+ .....+.. ...+.+||+||+..+.. ....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 45799999999999999999999876443333433332 23333344 56899999999987753 3344454
Q ss_pred -ccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccc
Q 032789 82 -GAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQR 121 (133)
Q Consensus 82 -~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~ 121 (133)
.+|++++|+|+++.++. ..|..++.+. +.|+++..
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~~--~~p~ilv~ 114 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIET--GIPVTIAL 114 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHHT--CSCEEEEE
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHhc--CCCEEEEE
Confidence 69999999999986544 4677777663 45555443
No 129
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.65 E-value=7.3e-17 Score=109.88 Aligned_cols=118 Identities=19% Similarity=0.286 Sum_probs=73.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEEC-CeEEEEEEEeCCCc----------ccccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQ----------ERYHS 74 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~----------~~~~~ 74 (133)
+....+||+++|.+|||||||++++++...........+.+......... .....+.+||+||. +.+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 34567899999999999999999999886322222223332333333333 33468999999994 33344
Q ss_pred cccccccc---cCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 75 LAPMYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 75 ~~~~~~~~---~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
....+++. +|++++|+|.+++.+ +....|+..+.+......+++.++|.
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHhcCCCEEEEEecccc
Confidence 44445555 788999999987533 22345666665544444444455554
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.64 E-value=4.5e-16 Score=117.45 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=62.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~--------~~~ 79 (133)
..+||+++|.+|||||||++++.+.+.. ....++.+.+.....+.+++ .++.+|||+|+.++.... ...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4578999999999999999999987532 23334444445555566666 789999999987765433 346
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccc
Q 032789 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~ 122 (133)
++.+|++++|+|++++.+++++..+...+.. ..+.|++++.+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~N 351 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVAN 351 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEE
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEE
Confidence 8899999999999998888654433333322 22566555443
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.62 E-value=2.2e-16 Score=118.01 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=76.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLA 76 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----------~~~~~ 76 (133)
...+||+++|.+|||||||++++++.... ....++.+.+.....+..++ ..+.+|||+|+.+ |....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence 35689999999999999999999987653 22233344444444555565 4689999999833 32222
Q ss_pred c-ccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 77 P-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 77 ~-~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
. ..++.+|++++|+|++++.+++.. .|+..+.+......+++.++|.
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~~~~iiiv~NK~Dl 298 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEAGKAVVIVVNKWDA 298 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHTTCEEEEEEECGGG
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHcCCcEEEEEECccC
Confidence 2 367889999999999999888876 5888887654444445555554
No 132
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.61 E-value=1.6e-15 Score=105.60 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=55.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeee--EEEEEEEECCeEEEEEEEeCCCcc--------cccccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQE--------RYHSLA 76 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~d~~g~~--------~~~~~~ 76 (133)
....+||+++|.+|||||||++++++.+.........+.+ ........++ ..+.+|||||.. ++....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 3468999999999999999999999887654332222222 2223333444 789999999962 222222
Q ss_pred ccc----ccccCEEEEEEECCC
Q 032789 77 PMY----YRGAAAAIIVYDITN 94 (133)
Q Consensus 77 ~~~----~~~~~~iv~v~d~~~ 94 (133)
... .+.+|++|+|+|+++
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTB
T ss_pred HHHHHhcCCCCCEEEEEEeCCC
Confidence 222 389999999999985
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=2.5e-15 Score=112.36 Aligned_cols=87 Identities=22% Similarity=0.224 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---------HSLAPMYY 80 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~---------~~~~~~~~ 80 (133)
.+|+++|.+|||||||++++.+++.. ....++.+.+.....+.+++ ..+.+|||+|.+.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 48999999999999999999987643 23334444445555666666 57899999997642 23345578
Q ss_pred cccCEEEEEEECCChhhHH
Q 032789 81 RGAAAAIIVYDITNQASFE 99 (133)
Q Consensus 81 ~~~~~iv~v~d~~~~~s~~ 99 (133)
+++|++++|+|+++..+..
T Consensus 80 ~~ad~il~V~D~~~~~~~~ 98 (439)
T 1mky_A 80 READLVLFVVDGKRGITKE 98 (439)
T ss_dssp TTCSEEEEEEETTTCCCHH
T ss_pred HhCCEEEEEEECCCCCCHH
Confidence 9999999999998764443
No 134
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.60 E-value=1.9e-15 Score=106.36 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=67.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccc---------c
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM---------Y 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~---------~ 79 (133)
..++|+++|.+|+|||||++++++..+.... ...+.+..............+.+|||||..++...... .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 5789999999999999999999987753211 11112111122222223478999999998776543221 1
Q ss_pred ccccCEEEEEEECCChhhHHHH-HHHHHHHHHhC
Q 032789 80 YRGAAAAIIVYDITNQASFERA-KKWVQELQAQG 112 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~-~~~~~~i~~~~ 112 (133)
.+.+|++++|+|++.. ++... ..|+..+.+..
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~ 149 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSF 149 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHh
Confidence 3479999999999764 35443 47888887653
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.59 E-value=1e-15 Score=114.02 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=74.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc-------c
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------P 77 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~-------~ 77 (133)
+....+||+++|..++|||||++++.+..+. .+..+....+.....+...+. .++.+|||+|+.++.... .
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 4567899999999999999999999987763 222333334444555555543 389999999998876553 3
Q ss_pred ccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 78 ~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
..++.+|++++|+|++.. .....|+..+.+......++++++|.
T Consensus 109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~~~piIvV~NK~Dl 152 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEMEIPFVVVVNKIDV 152 (423)
T ss_dssp HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHTTCCEEEECCCCTT
T ss_pred HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhcCCCEEEEEeCcCC
Confidence 368889999999998333 33467888887764444444455544
No 136
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.58 E-value=1.7e-14 Score=105.23 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=78.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---------LAPM 78 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~---------~~~~ 78 (133)
...++|+++|.+|||||||++++.+........+..........+... ...+.+||++|...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456799999999999999999999876432221222222223333333 36899999999754321 1112
Q ss_pred cccccCEEEEEEECCChh--hHHHHHHHHHHHHHhCCCccccccc
Q 032789 79 YYRGAAAAIIVYDITNQA--SFERAKKWVQELQAQGIHIQSLLQR 121 (133)
Q Consensus 79 ~~~~~~~iv~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~l~~ 121 (133)
....+|++++|+|++++. ++++...|+..+.....+.|+++..
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~ 287 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVI 287 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 345689999999999887 7888889999998866577777666
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.57 E-value=2.7e-14 Score=105.71 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=84.1
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEE-------------------EE---CCeEEEEE
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTL-------------------AV---NDATVKFE 62 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~ 62 (133)
......+||+++|.+++|||||++++.+...... .+........ .. ......+.
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS 78 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cCccccceeeccccccccceecccccccccccccccccceEE
Confidence 3456789999999999999999999987543221 1110000000 00 11236899
Q ss_pred EEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCC-Cccccccccccc
Q 032789 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGI-HIQSLLQRFFSC 125 (133)
Q Consensus 63 l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~l~~~~~~ 125 (133)
+||+||+++|.......+..+|++++|+|+++..++.+..+|+..+..... ...++++++|..
T Consensus 79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 79 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp EEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 999999999988888889999999999999998878888888887776543 455566666653
No 138
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.56 E-value=1.9e-14 Score=107.65 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=78.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCC-------------------------------CCCcccCceeeeEEEEEEEE
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ-------------------------------FIEFQESTIGAAFFSQTLAV 54 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (133)
+....++|+++|..++|||||+++|+... ...+..+..+.+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 44567899999999999999999995431 11122233444444444444
Q ss_pred CCeEEEEEEEeCCCcccccccccccccccCEEEEEEECCChhh---HH---HHHHHHHHHHHhC-CCcccccccccc
Q 032789 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---FE---RAKKWVQELQAQG-IHIQSLLQRFFS 124 (133)
Q Consensus 55 ~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s---~~---~~~~~~~~i~~~~-~~~~~~l~~~~~ 124 (133)
++ ..+.+||+||+++|.......+..+|++|+|+|+++... |+ +..+.+..+.... +...++++++|.
T Consensus 93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 44 689999999999998888888999999999999998532 22 2333333333322 334455666664
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.55 E-value=1.2e-15 Score=114.08 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=65.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcc--------ccccccccccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMYYR 81 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~--------~~~~~~~~~~~ 81 (133)
..+|+++|.+|||||||++++.+.+... ...+.|.+...........+..+.+|||+|++ .+......+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 3689999999999999999999876542 22334443333333333334689999999985 45556667789
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccc
Q 032789 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 82 ~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~ 122 (133)
++|++++|+|++++.++.. .|+..+.+. .+.|+++..+
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~N 119 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVN 119 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEE
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEE
Confidence 9999999999998766543 334333322 3455555443
No 140
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.55 E-value=3.3e-15 Score=111.61 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=76.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCcc-----------------------------cCceeeeEEEEEEEECC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQ-----------------------------ESTIGAAFFSQTLAVND 56 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 56 (133)
...+||+++|..++|||||+++++.. .+.... ......+.....+ +.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--EC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ec
Confidence 45789999999999999999999864 222110 1112222222222 23
Q ss_pred eEEEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHh-------C-CCccccccccccc
Q 032789 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-------G-IHIQSLLQRFFSC 125 (133)
Q Consensus 57 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~-------~-~~~~~~l~~~~~~ 125 (133)
....+.+||+||+++|.......++.+|++|+|+|+++ .+|+.+..|..+.+++ . +...++++++|..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 34789999999999998888888999999999999998 7788665554444433 2 3344556666654
No 141
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.54 E-value=1.3e-15 Score=114.32 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=71.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCC--------ccccccccc
Q 032789 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG--------QERYHSLAP 77 (133)
Q Consensus 6 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g--------~~~~~~~~~ 77 (133)
.+....+|+++|.+|||||||++++.+.+... ...+.|.+..............+.+|||+| ++++.....
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 34456899999999999999999999876542 223445544444444444456899999999 666666777
Q ss_pred ccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccc
Q 032789 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 78 ~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~ 122 (133)
.+++++|++|+|+|..+. +.....|+..+.+. .+.|+++..+
T Consensus 98 ~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~-~~~pvilV~N 139 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREG--VTAADEEVAKILYR-TKKPVVLAVN 139 (456)
T ss_dssp HHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT-CCSCEEEEEE
T ss_pred hhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH-cCCCEEEEEE
Confidence 788999999999998763 22333444444332 4455554433
No 142
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.54 E-value=4.3e-14 Score=102.44 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=58.3
Q ss_pred eEEEEEEEeCCCcccccccccccccccCEEEEEEECC----------ChhhHHHHHHHHHHHHHhC--CCccccccccc
Q 032789 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG--IHIQSLLQRFF 123 (133)
Q Consensus 57 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~----------~~~s~~~~~~~~~~i~~~~--~~~~~~l~~~~ 123 (133)
..+++++||++|+++++..|..++++++++|+|||++ +.+++++...|+..+.++. .++|++|.++.
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence 3488999999999999999999999999999999999 7889999999999987653 67787776553
No 143
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.53 E-value=5.7e-15 Score=107.34 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccccc---c
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMYYR---G 82 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----~~~~~~~~~~---~ 82 (133)
.+|+++|.++||||||++++...+.. ..+..+. .......+.+++ ...+.+||+||..+ +..+...+++ .
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftT-l~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTT-LVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSC-CCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccc-cCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 36889999999999999999876532 1222111 111122233332 25799999999643 3334444544 4
Q ss_pred cCEEEEEEECCC---hhhHHHHHHHHHHHHHhCC---Cccccccc
Q 032789 83 AAAAIIVYDITN---QASFERAKKWVQELQAQGI---HIQSLLQR 121 (133)
Q Consensus 83 ~~~iv~v~d~~~---~~s~~~~~~~~~~i~~~~~---~~~~~l~~ 121 (133)
++++|+|+|+++ +++++++..|+.++....+ +.|+++..
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~ 281 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 281 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEE
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEE
Confidence 999999999998 8899999999999988653 45555544
No 144
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.53 E-value=2.9e-15 Score=114.31 Aligned_cols=114 Identities=12% Similarity=0.150 Sum_probs=77.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCC------------------CCC----cccCceeeeEEEEEEEECCeEEEEEEEe
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ------------------FIE----FQESTIGAAFFSQTLAVNDATVKFEIWD 65 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~d 65 (133)
.+..+|+++|.+++|||||+++++... ... +.............+...+ +.+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 467899999999999999999996210 000 0001111112222333344 7899999
Q ss_pred CCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|||+.+|.......++.+|++|+|+|+++..+.+...-|. .+........++++++|.
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~~iPiivviNK~Dl 146 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLRHTPIMTFINKMDR 146 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTTTCCEEEEEECTTS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHcCCCEEEEEeCCCC
Confidence 9999999988888999999999999999987777776664 344433333444455554
No 145
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.53 E-value=1.8e-14 Score=101.58 Aligned_cols=116 Identities=14% Similarity=0.183 Sum_probs=66.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCC-Ccc-------cCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQ-------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---- 74 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~---- 74 (133)
+...++|+++|.+|+|||||+++++..... ..+ .++.+.+.....+..++..+++.+|||||..+...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 456899999999999999999998765443 333 45555555555555556667999999999743211
Q ss_pred ---cc-------cccc-------------cccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 75 ---LA-------PMYY-------------RGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 75 ---~~-------~~~~-------------~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
.. ..++ ..+|+++++++.+.......-..++..+.. ..+..+++.++|
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D 155 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKAD 155 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccC
Confidence 11 1111 237789998877653222223456666655 223333444444
No 146
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.53 E-value=2.4e-14 Score=108.25 Aligned_cols=118 Identities=23% Similarity=0.229 Sum_probs=73.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC--Cc---------------------------ccCceeeeEEEEEEEECCeE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--EF---------------------------QESTIGAAFFSQTLAVNDAT 58 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~ 58 (133)
...+||+++|.+++|||||+++|+..... .. .....|.+.......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 34689999999999999999999754110 00 00111222222222233344
Q ss_pred EEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHH------HHHHHHHHHHhC-CCccccccccccc
Q 032789 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER------AKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 59 ~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~------~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
..+.+||+||+++|.......++.+|++|+|+|+++..++.. ..+.+....... +...++++++|..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 789999999999998888889999999999999999765432 223333333322 3344556666654
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.53 E-value=7.7e-15 Score=110.40 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=63.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY 79 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~--------~~~ 79 (133)
..+||+++|.+|||||||++++.+.... ....++.+.+.....+.+++ .++.+|||+|..++.... ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4578999999999999999999986543 22334444444444555666 678999999986654332 336
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHH
Q 032789 80 YRGAAAAIIVYDITNQASFERAKKWVQELQ 109 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~ 109 (133)
++.+|++++|+|.+++.+.+. ..|+..+.
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~ 329 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK 329 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc
Confidence 788999999999998766655 55666654
No 148
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.52 E-value=7.3e-14 Score=102.29 Aligned_cols=108 Identities=19% Similarity=0.106 Sum_probs=70.4
Q ss_pred eE-EEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 032789 11 AK-LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------YHSLAPMYY 80 (133)
Q Consensus 11 ~k-i~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~---------~~~~~~~~~ 80 (133)
++ |+++|.+|||||||++++.+........+....+.....+.+++ ..+.+||++|... +.... ..+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence 44 99999999999999999998765332223333334455666666 6789999999622 22222 247
Q ss_pred cccCEEEEEEECCChh--hHHHHHHHHHHHHHhC-CCccccccc
Q 032789 81 RGAAAAIIVYDITNQA--SFERAKKWVQELQAQG-IHIQSLLQR 121 (133)
Q Consensus 81 ~~~~~iv~v~d~~~~~--s~~~~~~~~~~i~~~~-~~~~~~l~~ 121 (133)
..+|++++|+|++++. +.+++..|.+.+.+.. .+.|++++.
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~ 299 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE
Confidence 8899999999999876 6777777776666543 455544433
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.52 E-value=8.4e-16 Score=117.27 Aligned_cols=114 Identities=14% Similarity=0.184 Sum_probs=79.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~ 88 (133)
+.++|+++|.+++|||||+++|.+..+...+.++.+.++....+... ....+.+|||||++.|.......++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 46789999999999999999999876655444544444333333332 22478999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 89 VYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|+|+++....+..+.| ..+........++++++|.
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~~~vPiIVViNKiDl 116 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKDAHVPIVLAINKCDK 116 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHTTTCCEEECCBSGGG
T ss_pred EEECCCCccHHHHHHH-HHHHHcCCcEEEEEecccc
Confidence 9999987666555433 3333322223333444443
No 150
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.51 E-value=5.4e-14 Score=106.31 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=73.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 79 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~ 79 (133)
....++|+++|..++|||||++++.+.. ...+..+....+.....+.+++ ..+.+||+||+++|.......
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3467899999999999999999999766 2223333333333333444444 789999999999988877888
Q ss_pred ccccCEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 80 YRGAAAAIIVYDITN---QASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+..+|++++|+|+++ +.+++.+ ..+........++++++|.
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~~~ip~IvviNK~Dl 137 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHM----LILDHFNIPIIVVITKSDN 137 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHH----HHHHHTTCCBCEEEECTTS
T ss_pred HhhCCEEEEEEecCCCccHHHHHHH----HHHHHcCCCEEEEEECCCc
Confidence 999999999999987 4444333 3333333333445555554
No 151
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.51 E-value=1.2e-14 Score=109.90 Aligned_cols=91 Identities=22% Similarity=0.297 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcc-ccccc--------cccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-RYHSL--------APMY 79 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~-~~~~~--------~~~~ 79 (133)
.++|+++|.+|||||||++++.+.+.. ....+..+.+.....+.+++ .++.+|||+|.. ++... ....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987532 22334444445555666665 689999999987 65432 2346
Q ss_pred ccccCEEEEEEECCChhhHHHHH
Q 032789 80 YRGAAAAIIVYDITNQASFERAK 102 (133)
Q Consensus 80 ~~~~~~iv~v~d~~~~~s~~~~~ 102 (133)
++.+|++|+|+|++++.+++..+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~ 343 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK 343 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH
T ss_pred hhcccEEEEEecCCCCCCHHHHH
Confidence 78899999999999988876643
No 152
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.50 E-value=3.7e-14 Score=104.83 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=76.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCc-------ccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQ-------FIEF-------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS 74 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~ 74 (133)
..+||+++|..++|||||++++.... +... .+...|.+.......+......+.+||+||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998631 1100 001122222222233333447899999999999877
Q ss_pred cccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccccc
Q 032789 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 75 ~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
.....++.+|++|+|+|+++....+..+ ++..+.... |...++++++|..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHHTTCCCEEEEEECGGGC
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHHcCCCeEEEEEECcccC
Confidence 7777889999999999999865444433 334444432 2234566777764
No 153
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.50 E-value=2.3e-14 Score=106.12 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=80.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCc-------ccCceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKG--------QFIEF-------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~ 71 (133)
....+||+++|..++|||||++++.+. .+... .+...|.++......+......+.+||+||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 446789999999999999999999873 11110 001222222222333333347899999999999
Q ss_pred ccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccccc
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
|.......++.+|++|+|+|+++... .+..+|+..+.... |...++++++|..
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 98777788899999999999988654 34566776666543 2244567777765
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.50 E-value=1.7e-14 Score=108.28 Aligned_cols=115 Identities=21% Similarity=0.246 Sum_probs=75.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCC-CCcccCceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSL 75 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g----------~~~~~~~ 75 (133)
.....||+++|.++||||||++++.+... .....++.+.+.....+..++ ..+.+|||+| ++++...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence 34578999999999999999999997642 222333333333334455555 4899999999 5555544
Q ss_pred cc-ccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 76 AP-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 76 ~~-~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
.. ..++.+|++++|+|+++..+ ++...|+..+.+......++++++|.
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~~~~~~ilv~NK~Dl 318 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHEAGKAVVIVVNKWDA 318 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHHcCCCEEEEEEChhc
Confidence 33 36788999999999988543 33456777776644444444555554
No 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.50 E-value=9.2e-14 Score=103.76 Aligned_cols=117 Identities=22% Similarity=0.212 Sum_probs=75.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC--CCcc----------cCc-------------------eeeeEEEEEEEECC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IEFQ----------EST-------------------IGAAFFSQTLAVND 56 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~--~~~~----------~~~-------------------~~~~~~~~~~~~~~ 56 (133)
...+||+++|..++|||||+++|+.... .... ..+ .|.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4568999999999999999999986531 0000 011 01111111111222
Q ss_pred eEEEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccccc
Q 032789 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 57 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
....+.+||+||+++|.......+..+|++|+|+|+++... .+..+|+..+.... +...++++++|..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 34689999999999998777778899999999999998653 33445655555433 2344556666654
No 156
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.50 E-value=5.1e-14 Score=108.71 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=77.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCc-----c------cCceeeeEE--EEEEEE---CCeEEEEEEEeCCC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF-----Q------ESTIGAAFF--SQTLAV---NDATVKFEIWDTAG 68 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~--~~~~~-----~------~~~~~~~~~--~~~~~~---~~~~~~~~l~d~~g 68 (133)
..+..+|+++|..++|||||+++++.. ..... . +...|.++. ...+.+ ++..+.+.+|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 345779999999999999999999863 11110 0 011122221 111212 34568999999999
Q ss_pred cccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+.+|.......++.+|++|+|+|+++..+++....|........| ..++++++|.
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl 137 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDL 137 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTS
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCc
Confidence 999988888889999999999999999888888888776653222 3444444444
No 157
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.49 E-value=3.2e-14 Score=109.89 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=73.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----------cccCceeeeEEEEEEE--E---CCeEEEEEEEeCCCcc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQ--FIE-----------FQESTIGAAFFSQTLA--V---NDATVKFEIWDTAGQE 70 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~--~~~-----------~~~~~~~~~~~~~~~~--~---~~~~~~~~l~d~~g~~ 70 (133)
+..+|+++|..++|||||+++++... ... ..+...|.++...... + ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998631 110 0011223333322222 2 4456899999999999
Q ss_pred cccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 71 ~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
+|.......++.+|++|+|+|+++..+++....|........ ...++++++|.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~i-piIvViNKiDl 135 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL-EVVPVLNKIDL 135 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTC-EEEEEEECTTS
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEeeeccCc
Confidence 998888889999999999999999888888888887765422 23344444444
No 158
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.49 E-value=1e-13 Score=108.73 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=82.3
Q ss_pred CCCCCCCceeeEEEEEcCCCCCHHHHHHHHHh--CCCCCc-----------c-----cCceeeeEEEEEEEECCeEEEEE
Q 032789 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVK--GQFIEF-----------Q-----ESTIGAAFFSQTLAVNDATVKFE 62 (133)
Q Consensus 1 m~~~~~~~~~~ki~i~G~~~vGKTsli~~l~~--~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~ 62 (133)
|+...+..+..+|+++|.+++|||||+++++. +.+... + .+..........+...+ ..+.
T Consensus 1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~ 78 (693)
T 2xex_A 1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVN 78 (693)
T ss_dssp -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEE
T ss_pred CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEE
Confidence 56666677889999999999999999999985 222100 0 00111111122233333 7899
Q ss_pred EEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 63 l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
+|||||+.++.......++.+|++|+|+|+++..+++....|.. +.+......++++++|..
T Consensus 79 liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTYGVPRIVFVNKMDKL 140 (693)
T ss_dssp EECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHTTCCEEEEEECTTST
T ss_pred EEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHcCCCEEEEEECCCcc
Confidence 99999999998888889999999999999999888877776654 444433444455555543
No 159
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.48 E-value=3.7e-14 Score=106.58 Aligned_cols=117 Identities=13% Similarity=0.130 Sum_probs=76.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCc-----------------------------ccCceeeeEEEEEEEEC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF-----------------------------QESTIGAAFFSQTLAVN 55 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 55 (133)
....++|+++|..++|||||+++|+.. .+... .......+.....+.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-- 81 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-- 81 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE--
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe--
Confidence 346789999999999999999999864 11110 001122222222222
Q ss_pred CeEEEEEEEeCCCcccccccccccccccCEEEEEEECCChh---hHH---HHHHHHHHHHHhC-CCccccccccccc
Q 032789 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SFE---RAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 56 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~---s~~---~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
.....+.+||+||+++|.......+..+|++|+|+|+++.. +|+ +..+++..+.... +...++++++|..
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 33478999999999999888888899999999999998753 342 3334444444332 2344556666654
No 160
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.48 E-value=3.7e-13 Score=99.74 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=72.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhC---CCCCcccC--ceeeeEEEEEEEE-------------C--C----eEEEEE
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKG---QFIEFQES--TIGAAFFSQTLAV-------------N--D----ATVKFE 62 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 62 (133)
+...++|+++|..++|||||++++.+. .+..+..+ ++...+....+.. . + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 456789999999999999999999843 33333334 3333333332211 1 1 137899
Q ss_pred EEeCCCcccccccccccccccCEEEEEEECCC----hhhHHHHHHHHHHHHHh-CCCccccccccccc
Q 032789 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----QASFERAKKWVQELQAQ-GIHIQSLLQRFFSC 125 (133)
Q Consensus 63 l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~----~~s~~~~~~~~~~i~~~-~~~~~~~l~~~~~~ 125 (133)
+||+||+++|.......+..+|++++|+|+++ +.+++.+..| ... .+...++++++|..
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHTTCCCEEEEEECTTSS
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHcCCCeEEEEEEccCCC
Confidence 99999999987776677788999999999995 3444444332 222 23344555666643
No 161
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.47 E-value=3.3e-13 Score=100.10 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=75.7
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhC---CCCCcccC--ceeeeEEEEEEEE-------------C--C----eEEE
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKG---QFIEFQES--TIGAAFFSQTLAV-------------N--D----ATVK 60 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~ 60 (133)
..+...++|+++|..++|||||++++.+. .+..+..+ ++...+....+.. . + ....
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 44567899999999999999999999853 33334334 3333333322211 0 1 1378
Q ss_pred EEEEeCCCcccccccccccccccCEEEEEEECCCh----hhHHHHHHHHHHHHHh-CCCccccccccccc
Q 032789 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----ASFERAKKWVQELQAQ-GIHIQSLLQRFFSC 125 (133)
Q Consensus 61 ~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~----~s~~~~~~~~~~i~~~-~~~~~~~l~~~~~~ 125 (133)
+.+||+||+++|.......+..+|++|+|+|+++. .+.+.+..| ... .+...++++++|..
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHHTCCCEEEEEECGGGS
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHcCCCcEEEEEECccCC
Confidence 99999999999877666777889999999999953 444444332 222 23444556666654
No 162
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.47 E-value=2.2e-13 Score=106.87 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=78.8
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCc----------------ccCceeeeEEEEEEEECCeEEEEEEEeC
Q 032789 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF----------------QESTIGAAFFSQTLAVNDATVKFEIWDT 66 (133)
Q Consensus 5 ~~~~~~~ki~i~G~~~vGKTsli~~l~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 66 (133)
.+..+..+|+++|..++|||||+++++.. .+... .............+... .+.+.+|||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDT 84 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDT 84 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEEC
Confidence 34567889999999999999999999842 11000 00111111112223333 378999999
Q ss_pred CCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
||+.+|.......++.+|++|+|+|+++..+++....|... .+......++++++|..
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EKYKVPRIAFANKMDKT 142 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHTTCCEEEEEECTTST
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HHcCCCEEEEEECCCcc
Confidence 99999988888899999999999999998888887777653 33333333445555543
No 163
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.46 E-value=5.9e-13 Score=95.14 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=67.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccCceeeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAP 77 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~---------~~~~~~~ 77 (133)
.+..+|+++|.+|||||||++++++.+... ...+..........+..+ ...+.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345689999999999999999999886542 111211111111122223 3689999999987 3444556
Q ss_pred ccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccc
Q 032789 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQ 120 (133)
Q Consensus 78 ~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~ 120 (133)
..++.+|++++|+|.++ +.....|+-.... ..+.|.++.
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilv 122 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILA 122 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEE
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEE
Confidence 78899999999999977 3333345443333 134444443
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.46 E-value=1.3e-13 Score=106.42 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=74.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcc----cCceeeeEEEEEE------------EECCeEEEEEEEeCCCccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTL------------AVNDATVKFEIWDTAGQER 71 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~l~d~~g~~~ 71 (133)
.+.++|+++|..++|||||++++.+....... .++.+..+..... ..+.....+.+|||||+++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 45679999999999999999999876543311 1233322211100 0000112599999999999
Q ss_pred ccccccccccccCEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 72 YHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 72 ~~~~~~~~~~~~~~iv~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
|...+...++.+|++|+|+|+++ +.+++.+.. +........++++++|.
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRMYRTPFVVAANKIDR 134 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHHTTCCEEEEEECGGG
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHHcCCeEEEEeccccc
Confidence 99988889999999999999999 666665542 33333334444455554
No 165
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=3.2e-14 Score=104.03 Aligned_cols=112 Identities=13% Similarity=0.252 Sum_probs=60.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-Cccc--------CceeeeEEEEEEEECCeEEEEEEEeCCCc-------cc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQE--------STIGAAFFSQTLAVNDATVKFEIWDTAGQ-------ER 71 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~d~~g~-------~~ 71 (133)
...++|+++|++|+|||||++++++.... ..+. ++.+.......+..++....+.+||++|. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 35689999999999999999998764332 2221 34444333333334555678999999998 55
Q ss_pred cccccc-------ccccccCE-----------EEEEEECCC-hhhHHHHH-HHHHHHHHhCCCcccccccc
Q 032789 72 YHSLAP-------MYYRGAAA-----------AIIVYDITN-QASFERAK-KWVQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 72 ~~~~~~-------~~~~~~~~-----------iv~v~d~~~-~~s~~~~~-~~~~~i~~~~~~~~~~l~~~ 122 (133)
+..... .+++.+++ .+++|++++ ..++..+. .|+..+. .+.|++++++
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~N 182 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIA 182 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEE
Confidence 555544 44444333 346677665 56666665 5666553 4455555443
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.46 E-value=9.4e-15 Score=110.71 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=65.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEE
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv 87 (133)
++..+|+++|..++|||||++++....+.....+++..+.....+..++ ..+.+|||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3567999999999999999999987655443333332222222222233 57899999999999998888999999999
Q ss_pred EEEECCCh
Q 032789 88 IVYDITNQ 95 (133)
Q Consensus 88 ~v~d~~~~ 95 (133)
+|+|+++.
T Consensus 80 LVVda~~g 87 (501)
T 1zo1_I 80 LVVAADDG 87 (501)
T ss_dssp EEEETTTB
T ss_pred EEeecccC
Confidence 99999884
No 167
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.45 E-value=2.8e-13 Score=108.20 Aligned_cols=103 Identities=20% Similarity=0.242 Sum_probs=73.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCC------------CCC----cccC--ceeeeEEEEEEE------------ECC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ------------FIE----FQES--TIGAAFFSQTLA------------VND 56 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~------------~~~----~~~~--~~~~~~~~~~~~------------~~~ 56 (133)
.....||+++|..++|||||+++++... +.. +... ++........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4467799999999999999999998641 110 0111 111111111121 133
Q ss_pred eEEEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHH
Q 032789 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109 (133)
Q Consensus 57 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~ 109 (133)
..+.+.+|||||+.+|...+...++.+|++|+|+|+++..+++....|.....
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~ 148 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG 148 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999888999999999999999999988988877765544
No 168
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.44 E-value=1.6e-12 Score=93.84 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=58.0
Q ss_pred EEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEECC----------ChhhHHHHHHHHHHHHHhC--CCcccc
Q 032789 51 TLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG--IHIQSL 118 (133)
Q Consensus 51 ~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~----------~~~s~~~~~~~~~~i~~~~--~~~~~~ 118 (133)
.+..++ +++++||++|+++++..|..++++++++|+|||++ +.+++++...|+..+.++. .++|++
T Consensus 161 ~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ii 238 (327)
T 3ohm_A 161 PFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 238 (327)
T ss_dssp EEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred EEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEE
Confidence 334444 89999999999999999999999999999999665 6788888888998887643 577777
Q ss_pred ccccc
Q 032789 119 LQRFF 123 (133)
Q Consensus 119 l~~~~ 123 (133)
|.++.
T Consensus 239 L~~NK 243 (327)
T 3ohm_A 239 LFLNK 243 (327)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 76543
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.44 E-value=1.3e-13 Score=105.35 Aligned_cols=117 Identities=11% Similarity=0.139 Sum_probs=72.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------------cccCceeeeEEEEEEEECCeEEEEEEEeCC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE--------------------FQESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 67 (133)
.+..+|+++|.+++|||||+++++...-.- +.....|.+.......+....+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457899999999999999999998631100 000111222111111222223789999999
Q ss_pred CcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 68 g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
|+.+|.......++.+|++|+|+|+++....+ ...++...........++++++|..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRLRDTPILTFMNKLDRD 147 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTTTTCCEEEEEECTTSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHHcCCCEEEEEcCcCCc
Confidence 99999887788899999999999999864332 2334444433333344455555543
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.44 E-value=2.4e-13 Score=102.41 Aligned_cols=115 Identities=19% Similarity=0.212 Sum_probs=62.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC--CCCC-----------------------------cccCceeeeEEEEEEEECC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIE-----------------------------FQESTIGAAFFSQTLAVND 56 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 56 (133)
...++|+++|..++|||||+++|+.. .+.. +.......+.....+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 45689999999999999999999752 1110 000111111112223333
Q ss_pred eEEEEEEEeCCCcccccccccccccccCEEEEEEECCCh---hhHHHHHHH---HHHHHHhC-CCcccccccccc
Q 032789 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ---ASFERAKKW---VQELQAQG-IHIQSLLQRFFS 124 (133)
Q Consensus 57 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~---~s~~~~~~~---~~~i~~~~-~~~~~~l~~~~~ 124 (133)
...+.+||+||+++|.......+..+|++|+|+|+++. .+|+....| +....... |...++++++|.
T Consensus 120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 37899999999999988888889999999999999985 344422222 22222222 234456666665
No 171
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.44 E-value=4.2e-13 Score=100.31 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=68.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA----------- 76 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~----------- 76 (133)
..+||+++|++|||||||++++.+.... ....++.+.+.....+.+++ ..+.+||++|..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHHHH
Confidence 4689999999999999999999987542 12223333333344556666 478999999975432211
Q ss_pred -cccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 77 -PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 77 -~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
...++.+|++++++|+++..+.+.. .+...+.+......+++.++|.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~~~~~~ilv~NK~Dl 304 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMERRGRASVVVFNKWDL 304 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHTTCEEEEEEECGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCEEEEEECccC
Confidence 2346678999999999987666553 3344444433334444445543
No 172
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.43 E-value=9.2e-13 Score=103.54 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=80.1
Q ss_pred CCCCCCCceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCc-----------cc---CceeeeEE--EEEEEEC-----Ce
Q 032789 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEF-----------QE---STIGAAFF--SQTLAVN-----DA 57 (133)
Q Consensus 1 m~~~~~~~~~~ki~i~G~~~vGKTsli~~l~~~~--~~~~-----------~~---~~~~~~~~--~~~~~~~-----~~ 57 (133)
|+...+..+..+|+++|..++|||||+++++... +... +. ...+.+.. ...+.+. +.
T Consensus 1 ~~~~~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 80 (704)
T 2rdo_7 1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE 80 (704)
T ss_pred CCCCCCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC
Confidence 3433445567899999999999999999997531 1110 00 01112221 1222222 23
Q ss_pred EEEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 58 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
.+.+.+|||||+.+|.......++.+|++|+|+|+++..+.+....|.. .........++++++|..
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANKYKVPRIAFVNKMDRM 147 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHHcCCCEEEEEeCCCcc
Confidence 4789999999999998888889999999999999998877666665643 333333333445555543
No 173
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.42 E-value=1.3e-13 Score=101.13 Aligned_cols=101 Identities=10% Similarity=0.041 Sum_probs=71.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEE
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d 91 (133)
+|+++|..++|||||++++. ......+.....+..+ ...+.+||+||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999997 1222222222233333 3679999999999987766777899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCCCc-ccccc-cccc
Q 032789 92 ITNQASFERAKKWVQELQAQGIHI-QSLLQ-RFFS 124 (133)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~~~~-~~~l~-~~~~ 124 (133)
+ ...+.+.++|+..+....... .+++. ++|.
T Consensus 93 -~-~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 93 -P-QGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp -T-TCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred -C-CCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 4 445666777777776654333 34444 5554
No 174
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.8e-13 Score=104.26 Aligned_cols=87 Identities=26% Similarity=0.319 Sum_probs=63.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcc-------------------------------cCceeeeEEEEEEEEC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-------------------------------ESTIGAAFFSQTLAVN 55 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 55 (133)
....+||+++|.+++|||||+++|+.....-.. .+.+..+.....+..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 345789999999999999999999865322110 011222222222222
Q ss_pred CeEEEEEEEeCCCcccccccccccccccCEEEEEEECCCh
Q 032789 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ 95 (133)
Q Consensus 56 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~ 95 (133)
....+.+||+||+++|.......++.+|++|+|+|+++.
T Consensus 243 -~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 243 -HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp -SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred -CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 347899999999999988888889999999999999874
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.42 E-value=1.6e-13 Score=97.19 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=72.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcc------cCce-----------------e---eeEE------------
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ------ESTI-----------------G---AAFF------------ 48 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~------~~~~-----------------~---~~~~------------ 48 (133)
....++|+++|.+|||||||++++++.++.+.. .++. | .++.
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 446789999999999999999999998774221 1110 0 0000
Q ss_pred -----------EEEEEE-CCeEEEEEEEeCCCccc-------------ccccccccccccCEEE-EEEECCChhhHHHHH
Q 032789 49 -----------SQTLAV-NDATVKFEIWDTAGQER-------------YHSLAPMYYRGAAAAI-IVYDITNQASFERAK 102 (133)
Q Consensus 49 -----------~~~~~~-~~~~~~~~l~d~~g~~~-------------~~~~~~~~~~~~~~iv-~v~d~~~~~s~~~~~ 102 (133)
...+.+ ......+.+|||||... +......+++.++.++ +|+|+++..+.++..
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 000000 00125799999999642 2334456677888666 699998865555555
Q ss_pred HHHHHHHHhCCCcccccccccc
Q 032789 103 KWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 103 ~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
.|+..+........+++.++|.
T Consensus 183 ~~~~~~~~~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 183 KIAKEVDPQGQRTIGVITKLDL 204 (299)
T ss_dssp HHHHHHCTTCSSEEEEEECGGG
T ss_pred HHHHHhCCCCCeEEEEEEcccc
Confidence 6776665444444555555554
No 176
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.41 E-value=9.6e-14 Score=106.43 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=76.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC---CcccCceeeeEEEE----------------------EE----------
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQ----------------------TL---------- 52 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~---~~~~~~~~~~~~~~----------------------~~---------- 52 (133)
....+|+++|.+|+|||||++++++.++. ....++........ .+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45789999999999999999999998763 11222211000000 00
Q ss_pred ----EECCe-EEEEEEEeCCCccc-----------ccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcc
Q 032789 53 ----AVNDA-TVKFEIWDTAGQER-----------YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQ 116 (133)
Q Consensus 53 ----~~~~~-~~~~~l~d~~g~~~-----------~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 116 (133)
...+. ...+.+|||||... +......++..+|++++|+|+++....++...|+..+.+......
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 00000 02589999999764 223445567889999999999886666777788888765444455
Q ss_pred ccccccccc
Q 032789 117 SLLQRFFSC 125 (133)
Q Consensus 117 ~~l~~~~~~ 125 (133)
++++++|..
T Consensus 223 lVlNK~Dl~ 231 (550)
T 2qpt_A 223 VVLNKADMV 231 (550)
T ss_dssp EEEECGGGS
T ss_pred EEEECCCcc
Confidence 555555543
No 177
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=8e-13 Score=96.59 Aligned_cols=85 Identities=19% Similarity=0.076 Sum_probs=54.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERYH- 73 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~d~~g~~~~~- 73 (133)
..+|+++|.+|||||||++++.+..+.....+....+.....+.+.+. ...+.+||++|..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987643211111111111112233321 2579999999987652
Q ss_pred ---ccccc---cccccCEEEEEEECCC
Q 032789 74 ---SLAPM---YYRGAAAAIIVYDITN 94 (133)
Q Consensus 74 ---~~~~~---~~~~~~~iv~v~d~~~ 94 (133)
..... .++++|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22222 3789999999999986
No 178
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=2e-12 Score=95.63 Aligned_cols=85 Identities=21% Similarity=0.167 Sum_probs=48.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-ccc-----CceeeeEEEEE---------------EEECC-eEEEEEEEeCCC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQE-----STIGAAFFSQT---------------LAVND-ATVKFEIWDTAG 68 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~-~~~-----~~~~~~~~~~~---------------~~~~~-~~~~~~l~d~~g 68 (133)
+||+++|.+|||||||++++.+.+... .++ +..+..+.... ..+++ ...++.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876321 111 22222111000 01122 247899999999
Q ss_pred cccc----ccccc---ccccccCEEEEEEECCCh
Q 032789 69 QERY----HSLAP---MYYRGAAAAIIVYDITNQ 95 (133)
Q Consensus 69 ~~~~----~~~~~---~~~~~~~~iv~v~d~~~~ 95 (133)
..+. ..... ..++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 457899999999999875
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.38 E-value=7.4e-14 Score=107.88 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=59.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCC-------------------------------CCCcccCceeeeEEEEEEEEC
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ-------------------------------FIEFQESTIGAAFFSQTLAVN 55 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (133)
....++|+++|..++|||||+++|+... ...+..++++.+..... +.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~--~~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTT--FE 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEE--EE
Confidence 3456899999999999999999996421 00011122222222222 22
Q ss_pred CeEEEEEEEeCCCcccccccccccccccCEEEEEEECCChh---hH---HHHHHHHHHHHHhC-CCccccccccccc
Q 032789 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SF---ERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 56 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~---s~---~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
.....+.+|||||+++|.......+..+|++|+|+|+++.. .+ .+..+.+..+.... +.+.++++++|..
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 23478999999999999888888899999999999998643 11 11223333333322 3355566777654
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.37 E-value=5.3e-13 Score=89.86 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=55.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc----------ccccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----------HSLAP 77 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~----------~~~~~ 77 (133)
....+|+++|++|||||||++++.+..+.....++.|.......+..++ .+.+||++|.... .....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3567999999999999999999988764444445555544333333333 5789999997431 11112
Q ss_pred ccc---cccCEEEEEEECCChhhHH--HHHHHH
Q 032789 78 MYY---RGAAAAIIVYDITNQASFE--RAKKWV 105 (133)
Q Consensus 78 ~~~---~~~~~iv~v~d~~~~~s~~--~~~~~~ 105 (133)
.++ ..++++++++|++++.++. ++..|+
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~ 133 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA 133 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH
Confidence 233 4688999999999865543 234454
No 181
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.37 E-value=4.2e-13 Score=109.31 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=76.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCC-------CCC-------cccCceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ-------FIE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~ 72 (133)
....+||+++|..++|||||++++.+.. +.. ..+.+.|.++....+.++.....+.+||+||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3457899999999999999999998631 100 01122333332222333334578999999999999
Q ss_pred cccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC-CCccccccccccc
Q 032789 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-IHIQSLLQRFFSC 125 (133)
Q Consensus 73 ~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~l~~~~~~ 125 (133)
.......++.+|++|+|+|+++.... +..+|+..+.... |...++++++|..
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 87777789999999999999986433 3445666555433 2244567777764
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.37 E-value=1.9e-12 Score=101.62 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=77.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCc-ccCceee----eE----EEE-----------------------------
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGA----AF----FSQ----------------------------- 50 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~-~~~~~~~----~~----~~~----------------------------- 50 (133)
..++|+++|.+|+|||||++++++.+..+. ..++... .+ ...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 578999999999999999999998765431 1222210 00 000
Q ss_pred ----------------EEEECCeE--EEEEEEeCCCcccc---cccccccccccCEEEEEEECCChhhHHHHHHHHHHHH
Q 032789 51 ----------------TLAVNDAT--VKFEIWDTAGQERY---HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109 (133)
Q Consensus 51 ----------------~~~~~~~~--~~~~l~d~~g~~~~---~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~ 109 (133)
.+...... ..+.+|||||.... ......+++.+|++|+|+|.+++.+..+...|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00111000 35899999996542 3344567889999999999999888888877876665
Q ss_pred HhCCCccccccccccc
Q 032789 110 AQGIHIQSLLQRFFSC 125 (133)
Q Consensus 110 ~~~~~~~~~l~~~~~~ 125 (133)
+......++++++|..
T Consensus 228 ~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 228 GRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TSCCCEEEEEECGGGG
T ss_pred hhCCCEEEEEECcccc
Confidence 5444455666666653
No 183
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.36 E-value=5e-13 Score=98.57 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=49.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERYH 73 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~d~~g~~~~~ 73 (133)
...+|.++|.+|||||||++++.+.+......+..+.+.....+.+.+. ...+.+||++|..+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4578999999999999999999987653322233323222333333321 2359999999987643
Q ss_pred c-------cccccccccCEEEEEEECCChhhHH
Q 032789 74 S-------LAPMYYRGAAAAIIVYDITNQASFE 99 (133)
Q Consensus 74 ~-------~~~~~~~~~~~iv~v~d~~~~~s~~ 99 (133)
. .....++++|++++|+|+++.+++.
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~ 133 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDIT 133 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcchh
Confidence 3 2344578999999999998765543
No 184
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.31 E-value=1.3e-12 Score=93.31 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=25.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF 35 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~ 35 (133)
...++|+++|.+|||||||++++++.++
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4567999999999999999999999876
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.29 E-value=4.7e-12 Score=99.03 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=74.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcc------------------cCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ------------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 69 (133)
....+|+++|..++|||||+++++........ ...++.......+... .+.+++||++|+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence 35678999999999999999999843221000 0112222222333333 478999999999
Q ss_pred ccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccc
Q 032789 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFF 123 (133)
Q Consensus 70 ~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~ 123 (133)
.+|.......++.+|++++|+|.++....+.. .++..+.+......+++.++|
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHTTCCEEEEEECGG
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHccCCEEEEecCCc
Confidence 99988888899999999999998876544433 555555553333333344444
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.27 E-value=4.7e-12 Score=92.34 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=68.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceee---eEE-------------------------------------
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA---AFF------------------------------------- 48 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~---~~~------------------------------------- 48 (133)
...+|+++|++||||||+++++.+..+.+.....+.. ...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4459999999999999999999998764322211100 000
Q ss_pred ------------EEEEEE-CCeEEEEEEEeCCCcccc-------------cccccccccccCEEEEEEECCChhhH-HHH
Q 032789 49 ------------SQTLAV-NDATVKFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVYDITNQASF-ERA 101 (133)
Q Consensus 49 ------------~~~~~~-~~~~~~~~l~d~~g~~~~-------------~~~~~~~~~~~~~iv~v~d~~~~~s~-~~~ 101 (133)
...+.+ ......+.+||+||..++ ......+++++|++++|+|.++.... .+.
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 000000 011236899999998765 33455678899999999987654322 222
Q ss_pred HHHHHHHHHhCCCcccccccccc
Q 032789 102 KKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 102 ~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
..++..+........+++.++|.
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl 215 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDL 215 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGG
T ss_pred HHHHHHhcccCCCEEEEEeCCcc
Confidence 33334333333344455555554
No 187
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.22 E-value=7.8e-11 Score=87.15 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=64.7
Q ss_pred ceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEECCC----------hhhHHHHHHHHHHHHHh
Q 032789 42 TIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQ 111 (133)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~----------~~s~~~~~~~~~~i~~~ 111 (133)
|+|... ..+.+++ +.+++||++|++.++..|..++++++++|+|||+++ .++|+++..|+..+.++
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 444433 3445554 899999999999999999999999999999999999 89999999999999875
Q ss_pred --CCCccccccccc
Q 032789 112 --GIHIQSLLQRFF 123 (133)
Q Consensus 112 --~~~~~~~l~~~~ 123 (133)
.+++|++|.++.
T Consensus 280 ~~~~~~piiLvgNK 293 (402)
T 1azs_C 280 RWLRTISVILFLNK 293 (402)
T ss_dssp TTCSSCCEEEEEEC
T ss_pred ccCCCCeEEEEEEC
Confidence 367777776654
No 188
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.20 E-value=7.3e-11 Score=86.64 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=65.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-------ccccccc
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-------APMYYRG 82 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~-------~~~~~~~ 82 (133)
..+|.++|.||||||||+|++.+.+......+....+.....+.+.+ .++++.|+||-.+-... .-..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999998664433334444455556666666 78999999995432111 1234678
Q ss_pred cCEEEEEEECCChhh-HHHHHHHHH
Q 032789 83 AAAAIIVYDITNQAS-FERAKKWVQ 106 (133)
Q Consensus 83 ~~~iv~v~d~~~~~s-~~~~~~~~~ 106 (133)
+|++++|+|+++|.. .+.+..-+.
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~ 174 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELE 174 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHH
T ss_pred cCccccccccCccHHHHHHHHHHHH
Confidence 999999999998743 333433333
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=6.7e-11 Score=87.97 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=61.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcc--------cCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---- 74 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~---- 74 (133)
....++|+++|++|||||||++.+.+..+.... .++.+.......+...+....+.+||++|......
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 445788999999999999999999987653211 11222111111111223345789999999765311
Q ss_pred ---------------------cccccccccCEEEEEEECCCh-hhHHHHH-HHHHHHHHhCCCcccccccc
Q 032789 75 ---------------------LAPMYYRGAAAAIIVYDITNQ-ASFERAK-KWVQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 75 ---------------------~~~~~~~~~~~iv~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~~l~~~ 122 (133)
.....+.++++.+++|.+..- .+++.+. .|+..+.. ..++++++.
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~---~v~iIlVin 175 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIA 175 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT---TSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc---cCcEEEEEE
Confidence 123455667776677776553 4666655 68877753 455555544
No 190
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.17 E-value=1e-10 Score=85.70 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=53.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-Cc-----ccCceeeeEEEEEEEECC-------------------eEEEEEEEe
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EF-----QESTIGAAFFSQTLAVND-------------------ATVKFEIWD 65 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-~~-----~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~d 65 (133)
++|.++|.+|||||||++++.+.... .. ..++.+.. .+.+ ....+.+||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~------~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV------PLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE------ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE------ecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 58999999999999999999876421 11 12333321 1111 235799999
Q ss_pred CCCcccccc----ccc---ccccccCEEEEEEECCC
Q 032789 66 TAGQERYHS----LAP---MYYRGAAAAIIVYDITN 94 (133)
Q Consensus 66 ~~g~~~~~~----~~~---~~~~~~~~iv~v~d~~~ 94 (133)
++|..+... ... ..++.+|++++|+|+++
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 999876432 212 23789999999999985
No 191
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.16 E-value=1.7e-10 Score=84.11 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=63.8
Q ss_pred CceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEECCC----------hhhHHHHHHHHHHHHH
Q 032789 41 STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQA 110 (133)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~----------~~s~~~~~~~~~~i~~ 110 (133)
+|.|.. ...+.+++ +.+++||++|++.++..|..++++++++|+|||+++ ..++++...|+..+.+
T Consensus 179 ~T~Gi~--~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 179 KTTGIV--ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp CCCSEE--EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred ceeceE--EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 345543 33444554 899999999999999999999999999999999999 5789999999999987
Q ss_pred h--CCCccccccccc
Q 032789 111 Q--GIHIQSLLQRFF 123 (133)
Q Consensus 111 ~--~~~~~~~l~~~~ 123 (133)
+ .+++|++|..+.
T Consensus 255 ~~~~~~~piiLv~NK 269 (353)
T 1cip_A 255 NKWFTDTSIILFLNK 269 (353)
T ss_dssp CGGGTTSEEEEEEEC
T ss_pred CccccCCcEEEEEEC
Confidence 4 367777776654
No 192
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.15 E-value=1.2e-10 Score=84.90 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=58.1
Q ss_pred eEEEEEEEeCCCcccccccccccccccCEEEEEEECC----------ChhhHHHHHHHHHHHHHh--CCCcccccccccc
Q 032789 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQ--GIHIQSLLQRFFS 124 (133)
Q Consensus 57 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~----------~~~s~~~~~~~~~~i~~~--~~~~~~~l~~~~~ 124 (133)
..+++++||++|+++++..+..++++++++|+|||++ +.++|++...|+..+.++ .+++|++|.++..
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 789999999999999775 3678887776543
No 193
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.12 E-value=3.3e-10 Score=82.84 Aligned_cols=79 Identities=10% Similarity=0.112 Sum_probs=57.5
Q ss_pred CceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEECCC----------hhhHHHHHHHHHHHHH
Q 032789 41 STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQA 110 (133)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~----------~~s~~~~~~~~~~i~~ 110 (133)
+|.|... ..+..++ +.+++||++|++.++..|..++++++++|+|||+++ ..++++...|+..+.+
T Consensus 187 ~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 4455433 3444554 899999999999999999999999999999999999 7899999999999986
Q ss_pred h--CCCccccccccc
Q 032789 111 Q--GIHIQSLLQRFF 123 (133)
Q Consensus 111 ~--~~~~~~~l~~~~ 123 (133)
+ ..++|++|..+.
T Consensus 263 ~~~~~~~piILv~NK 277 (362)
T 1zcb_A 263 NRVFSNVSIILFLNK 277 (362)
T ss_dssp CGGGTTSEEEEEEEC
T ss_pred chhhCCCCEEEEEEC
Confidence 5 367777776543
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.12 E-value=2.4e-11 Score=86.80 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=32.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHhC-CCCCcc--------cCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVKG-QFIEFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 69 (133)
....++|+++|++|||||||++++.+. .+.... .++.+...........+....+.+||++|.
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence 456789999999999999999998875 333322 111111111111122344578999999997
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.11 E-value=2.8e-10 Score=87.30 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=79.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC-------------C-----CC----CcccCceeeeEEEEEEEECCeEEEEEEEeC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG-------------Q-----FI----EFQESTIGAAFFSQTLAVNDATVKFEIWDT 66 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~-------------~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 66 (133)
+.-+|.|+|..++|||||..+++.. . .. .+....+.+......+.+++ +.++++||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 4678999999999999999998621 0 11 11112222222233444555 78999999
Q ss_pred CCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
||+.+|.......++-+|+.|+|+|..+.-..+...-|...... .....+++++.|..
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR-ATPVMTFVNKMDRE 165 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-TCCEEEEEECTTSC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh-CCceEEEEecccch
Confidence 99999999999999999999999999998777887788655544 33344556666543
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.11 E-value=3.1e-11 Score=87.89 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=25.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI 36 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~ 36 (133)
...++|+++|.++||||||++++.+.++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 34679999999999999999999998774
No 197
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.07 E-value=5e-10 Score=88.18 Aligned_cols=123 Identities=19% Similarity=0.137 Sum_probs=81.5
Q ss_pred CCCCCCCceeeEEEEEcCCCCCHHHHHHHHHhC--------C------CCC--cccCceeeeEEE--EEEEEC-----Ce
Q 032789 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKG--------Q------FIE--FQESTIGAAFFS--QTLAVN-----DA 57 (133)
Q Consensus 1 m~~~~~~~~~~ki~i~G~~~vGKTsli~~l~~~--------~------~~~--~~~~~~~~~~~~--~~~~~~-----~~ 57 (133)
|+...|-.+.-+|.|+|.-.+|||||..+++.. + +.. ..+..-|+++.+ ..+.+. ..
T Consensus 4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 565556667779999999999999999998721 1 110 001122333322 222222 13
Q ss_pred EEEEEEEeCCCcccccccccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 58 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
.+.++++|||||.+|.......++-+|+.|+|+|+..--..+...-|....++..| ...++++.|.
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iNKiDr 149 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVNKMDR 149 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEECSSS
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEccccc
Confidence 58899999999999999999999999999999999987777777778777766444 3344555554
No 198
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.05 E-value=4.4e-10 Score=83.52 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---cccc
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMY---YRGA 83 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----~~~~~~~~---~~~~ 83 (133)
.|.++|++|||||||++++.+.... ..+..+. .......+..++ ...+.+||++|..+ ...+...+ .+.+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftT-l~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTT-LSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCS-SCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccce-ecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 5789999999999999999876431 1111111 111122233332 35789999999743 22222222 4568
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHh
Q 032789 84 AAAIIVYDITNQASFERAKKWVQELQAQ 111 (133)
Q Consensus 84 ~~iv~v~d~~~~~s~~~~~~~~~~i~~~ 111 (133)
+.++.++|++ +..+.++..|..++...
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~l 263 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAY 263 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHH
Confidence 9999999998 66788888888777664
No 199
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.98 E-value=6.6e-11 Score=84.50 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=71.6
Q ss_pred HHHHHHHhCCCC-CcccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccCEEEEEEECCChh-hHHHHH
Q 032789 25 SLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAK 102 (133)
Q Consensus 25 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~-s~~~~~ 102 (133)
+++.++..+.|. ..+.+++|..+. ..+..++ ++.+||+ ++++..+++.+++++|++++|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 678888888888 788899995443 3222222 7899999 8999999999999999999999999987 799999
Q ss_pred HHHHHHHHhCCCcccccccc
Q 032789 103 KWVQELQAQGIHIQSLLQRF 122 (133)
Q Consensus 103 ~~~~~i~~~~~~~~~~l~~~ 122 (133)
.|+..+.. .+.|+++..+
T Consensus 106 ~~l~~~~~--~~~piilv~N 123 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVIN 123 (301)
T ss_dssp HHHHHHHH--TTCEEEEEEC
T ss_pred HHHHHHHH--CCCCEEEEEe
Confidence 99998876 4566555443
No 200
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.90 E-value=2.7e-09 Score=78.76 Aligned_cols=86 Identities=20% Similarity=0.105 Sum_probs=56.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCC-CCcccCceeeeEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY 72 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~d~~g~~~~ 72 (133)
...++.++|++|||||||++.+.+... .....+....+.....+.+.+. ...+.+||++|....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 456899999999999999999999664 2222232222222223333321 146899999995432
Q ss_pred cc-------cccccccccCEEEEEEECCC
Q 032789 73 HS-------LAPMYYRGAAAAIIVYDITN 94 (133)
Q Consensus 73 ~~-------~~~~~~~~~~~iv~v~d~~~ 94 (133)
.. .....++.+|+++.|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11 22334578999999999874
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.75 E-value=1.1e-09 Score=85.36 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCCCCc--------------ccCceeeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK--GQFIEF--------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS 74 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~ 74 (133)
-+|.|+|.-++|||||..+++. +..... .+..-|+++......+.-.++.++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4789999999999999999873 111100 001112333222222222347899999999999999
Q ss_pred cccccccccCEEEEEEECCChhhHHHHHHHHHHHHHhCCCcccccccccc
Q 032789 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLLQRFFS 124 (133)
Q Consensus 75 ~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~l~~~~~ 124 (133)
.....++.+|+.|+|+|+..--..+...-|........|. .+++++.|.
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~-i~~INKmDr 131 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT-IFFINKIDQ 131 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSC-EECCEECCS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe-EEEEecccc
Confidence 9999999999999999999876666666777666664443 344555554
No 202
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.65 E-value=3.5e-08 Score=69.86 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=36.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 70 (133)
...++++++|.+|||||||+|++.+.+... .....+.+.....+..+. .+.+|||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 356899999999999999999999865332 112223332233333332 68999999954
No 203
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.65 E-value=1.1e-08 Score=71.80 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~ 71 (133)
.+++++|.+|||||||++++.+..... .....|.+.....+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 699999999999999999999876532 22333333322223222 2679999999654
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.57 E-value=2e-07 Score=73.81 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=68.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccC-ce-------------------------------------------
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-TI------------------------------------------- 43 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~-~~------------------------------------------- 43 (133)
-..++|+++|..++||||+++.+.+..+.+.... ..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3467999999999999999999999876321110 00
Q ss_pred -----eee--EEEEEEEECCeEEEEEEEeCCCcccc-------------ccccccc-ccccCEEEEEEECCChhhHHHHH
Q 032789 44 -----GAA--FFSQTLAVNDATVKFEIWDTAGQERY-------------HSLAPMY-YRGAAAAIIVYDITNQASFERAK 102 (133)
Q Consensus 44 -----~~~--~~~~~~~~~~~~~~~~l~d~~g~~~~-------------~~~~~~~-~~~~~~iv~v~d~~~~~s~~~~~ 102 (133)
+.+ .....+... ....+.++|+||-... ......+ ...+|++++|+|.+....-++..
T Consensus 129 ~g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 000 000011111 1235789999995431 1111222 35789999999998754333333
Q ss_pred HHHHHHHHhCCCccccccccccc
Q 032789 103 KWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 103 ~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
.++..+.........+++++|..
T Consensus 208 ~ll~~L~~~g~pvIlVlNKiDlv 230 (772)
T 3zvr_A 208 KIAKEVDPQGQRTIGVITKLDLM 230 (772)
T ss_dssp HHHHHHCTTCSSEEEEEECTTSS
T ss_pred HHHHHHHhcCCCEEEEEeCcccC
Confidence 45566655444555666666643
No 205
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.57 E-value=8.7e-09 Score=75.04 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....+|+++|.+||||||+++++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 206
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.47 E-value=1e-07 Score=64.30 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+|+++|.+|||||||++++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999865
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.41 E-value=2.2e-07 Score=67.60 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....|.++|.+|||||||++++.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999999986
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.33 E-value=1.6e-08 Score=68.63 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=29.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeee
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAA 46 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~ 46 (133)
...+|+++|.+|||||||+++++...+...+..+++.+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 46899999999999999999999875544344444443
No 209
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.28 E-value=1.3e-08 Score=76.69 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=61.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCccc--ccccc--------c
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLA--------P 77 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--~~~~~--------~ 77 (133)
....+|+++|.+|+||||+++++...-... ...+.............+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999997642211 111111110000000011113446889888732 22222 4
Q ss_pred ccccccCEEEEEEECCChhhHHHHHHHHHHHHHhC
Q 032789 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112 (133)
Q Consensus 78 ~~~~~~~~iv~v~d~~~~~s~~~~~~~~~~i~~~~ 112 (133)
.++...++.++|+|.++. +.+....|++.+.+..
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~ 149 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG 149 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence 455567888999999987 5677778888777654
No 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.26 E-value=1.6e-06 Score=63.48 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-----CcccCceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-----EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 69 (133)
.+++++|.+|||||||+|.+.+.... .......+.+.......... .+.++||||-
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~ 221 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGI 221 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCB
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCc
Confidence 57999999999999999999875311 11112223333333333333 2789999995
No 211
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.25 E-value=1.7e-06 Score=63.32 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC------CCCCcccCceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG------QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 70 (133)
.+++++|.+|||||||+|.+.+. .......+ +.+.......... .+.++||||-.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~---~~~liDtPG~~ 223 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLES---GATLYDTPGII 223 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECST---TCEEEECCSCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCC---CeEEEeCCCcC
Confidence 47999999999999999999975 12111112 2223333344443 37999999943
No 212
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.24 E-value=2.3e-06 Score=59.12 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHH
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~ 31 (133)
+...+++.|..||||||+++++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 56788999999999999999997
No 213
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.19 E-value=4.8e-07 Score=65.49 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=24.9
Q ss_pred EEEEEEEeCCCcccccccccccccccCEEEEEEECCChhh
Q 032789 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS 97 (133)
Q Consensus 58 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s 97 (133)
++.+.+|||+|..+... ...+.+|++++|+|.++...
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~ 184 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDD 184 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC-----
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHH
Confidence 36899999999654332 24688999999999876543
No 214
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.18 E-value=5.1e-06 Score=58.36 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++++|++|+|||||++.+.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999974
No 215
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.09 E-value=4.3e-06 Score=64.66 Aligned_cols=62 Identities=16% Similarity=0.058 Sum_probs=38.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCcc-----cCceeeeEEEEEEEE-CCeEEEEEEEeCCCccc
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----ESTIGAAFFSQTLAV-NDATVKFEIWDTAGQER 71 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~ 71 (133)
....+|+++|.+|||||||+|++.+....-.. ..+.+.- ...... ......+.++||||-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~--~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIW--MWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEE--EEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEE--EeecccccCCCceEEEecCCCcCc
Confidence 35678999999999999999999987532111 1112211 111111 12335789999999653
No 216
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.98 E-value=2.1e-06 Score=62.14 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...+.++|++|||||||++.+.+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999973
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.93 E-value=5.7e-06 Score=62.88 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=19.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHH
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~ 31 (133)
....|+++|.+||||||+++++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.77 E-value=7.6e-05 Score=55.62 Aligned_cols=28 Identities=25% Similarity=0.511 Sum_probs=23.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhCCC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF 35 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~~~ 35 (133)
...++++++|++|+|||||++.+.+..+
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 3456799999999999999999998643
No 219
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.75 E-value=5.1e-05 Score=54.00 Aligned_cols=57 Identities=11% Similarity=-0.021 Sum_probs=45.1
Q ss_pred cccccccccccccccCEEEEEEECCChh-hHHHHHHHHHHHHHhCCCccccccccccc
Q 032789 69 QERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGIHIQSLLQRFFSC 125 (133)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iv~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 125 (133)
++++..+.+.++.++|++++|+|++++. +++.+..|+..+........++++++|.+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 6777777788999999999999999986 89999999998876444444555566654
No 220
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.63 E-value=3.4e-05 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-++++|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999863
No 221
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.62 E-value=3.9e-05 Score=50.52 Aligned_cols=22 Identities=36% Similarity=0.761 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 222
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.55 E-value=5e-05 Score=50.65 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.++++|++|||||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999876
No 223
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.54 E-value=6.1e-05 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.++++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999875
No 224
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.49 E-value=6.4e-05 Score=49.51 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
++++|++||||||+++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999853
No 225
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.49 E-value=9.3e-05 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.-.|+++|++||||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 226
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.48 E-value=7e-05 Score=49.65 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-++++|++||||||+++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999864
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.47 E-value=7.6e-05 Score=49.61 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
|+++|++|||||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999854
No 228
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.43 E-value=9.1e-05 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..--|+++|++|||||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3346889999999999999999864
No 229
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.41 E-value=9.9e-05 Score=49.51 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-|+++|++||||||+++.+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999875
No 230
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.41 E-value=9.4e-05 Score=49.51 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-++++|++|||||||++.+.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998864
No 231
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.41 E-value=9.5e-05 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++|||||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999874
No 232
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.40 E-value=9.8e-05 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-++++|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999874
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.38 E-value=0.00011 Score=49.02 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-|+++|++||||||+++++...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999753
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.38 E-value=0.00025 Score=53.16 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..-.-|.|+|+.++|||+|+|++++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3456788999999999999999986
No 235
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.37 E-value=0.00013 Score=46.87 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.|++.|++||||||+++.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 236
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.34 E-value=0.00013 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|++.|.+||||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 237
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.34 E-value=0.00014 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..|+++|++||||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998763
No 238
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.33 E-value=0.00014 Score=46.58 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 032789 11 AKLVLLGDVGAGKSSLVLRF 30 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l 30 (133)
.-|++.|++||||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.33 E-value=0.00015 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.....|.|+|++|||||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999988764
No 240
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.31 E-value=0.00014 Score=48.13 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
..|+++|++||||||+++.+.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998753
No 241
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.29 E-value=0.00016 Score=46.87 Aligned_cols=21 Identities=38% Similarity=0.687 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
+|+++|.+||||||+++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 242
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.29 E-value=0.00013 Score=47.45 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=16.3
Q ss_pred EEEEEcCCCCCHHHHHHH
Q 032789 12 KLVLLGDVGAGKSSLVLR 29 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~ 29 (133)
-++++|++|||||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999994
No 243
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.00019 Score=47.71 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
-.|+++|++||||||+++.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
No 244
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.28 E-value=0.00017 Score=47.36 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 245
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.28 E-value=0.00018 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-|++.|.+||||||+++.+...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999763
No 246
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.27 E-value=0.00019 Score=48.04 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
+|++.|++||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 247
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.25 E-value=0.00021 Score=47.91 Aligned_cols=21 Identities=48% Similarity=0.621 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
+|++.|++||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 248
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.25 E-value=0.00022 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
-.|+++|++||||||+++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 249
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.0002 Score=47.58 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|+++|.+||||||+++.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 250
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.24 E-value=0.00021 Score=46.19 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
-+.++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999998754
No 251
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.23 E-value=0.00026 Score=46.92 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.....|++.|.+||||||+++.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999864
No 252
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.23 E-value=0.00022 Score=48.91 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 032789 11 AKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~ 31 (133)
-.|+++|++||||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 253
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.23 E-value=0.00029 Score=46.88 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....|++.|.+||||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999874
No 254
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.22 E-value=0.00024 Score=46.89 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999875
No 255
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.22 E-value=0.00022 Score=46.56 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.|++.|.+||||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 256
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.22 E-value=0.00024 Score=46.31 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|+++|.+||||||+++.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 257
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.21 E-value=5.5e-05 Score=51.44 Aligned_cols=55 Identities=7% Similarity=-0.076 Sum_probs=32.8
Q ss_pred CCcccccccccccccccCEEEEEEECCChhhHHHHHHHH---HHHHHhC---CCcccccccc
Q 032789 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV---QELQAQG---IHIQSLLQRF 122 (133)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~~~~~~~---~~i~~~~---~~~~~~l~~~ 122 (133)
+||++++.+|+.+++++|++|+|+|.+|++.++ .++-+ ..+.+.. .++|.++.-+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlAN 170 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSC 170 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEE
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeC
Confidence 378899999999999999999999999986544 33333 2222221 4566666554
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.21 E-value=0.00024 Score=47.41 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
....|.++|++||||||+++.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3357899999999999999988763
No 259
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.21 E-value=0.00022 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..-|+++|++||||||+++.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999988865
No 260
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.20 E-value=0.00019 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999764
No 261
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.20 E-value=0.00035 Score=46.29 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....|++.|.+||||||+++.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999874
No 262
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.18 E-value=0.00029 Score=46.47 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
++...|++.|.+||||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34568999999999999999998765
No 263
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.18 E-value=0.00023 Score=47.33 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
+++++|++|+||||+++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999998763
No 264
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.17 E-value=0.00029 Score=47.50 Aligned_cols=21 Identities=48% Similarity=0.675 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.|+++|+|||||+|.++++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 265
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.17 E-value=0.00029 Score=47.41 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|.++|++||||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.17 E-value=0.0003 Score=45.90 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|++.|.+||||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 267
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.16 E-value=0.0003 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|+++|.+||||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 268
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.15 E-value=0.00037 Score=45.44 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|+++|.+||||||+++.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999874
No 269
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.15 E-value=0.00043 Score=45.28 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.....|+++|.+||||||+++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 270
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.14 E-value=0.00036 Score=45.76 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...|+++|.+||||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998764
No 271
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.14 E-value=0.0003 Score=46.66 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.+|+++|.+||||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 272
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.13 E-value=0.00026 Score=46.08 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988754
No 273
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.13 E-value=0.0003 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|++.|.+||||||+++.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999874
No 274
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.13 E-value=0.00023 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 275
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.13 E-value=0.00046 Score=46.88 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=19.2
Q ss_pred eeeE-EEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAK-LVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~k-i~i~G~~~vGKTsli~~l~~ 32 (133)
...| |+++|+|||||+|.++++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445 45789999999999998874
No 276
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.12 E-value=0.00031 Score=48.41 Aligned_cols=22 Identities=41% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.11 E-value=0.0004 Score=45.35 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|++.|.+||||||+++.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998864
No 278
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.11 E-value=0.00032 Score=47.05 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
+|++.|.+||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 279
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.10 E-value=0.00034 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..-++++|.+|+||||+++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346889999999999999998853
No 280
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.09 E-value=0.00029 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999775
No 281
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.08 E-value=0.0004 Score=46.73 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|+++|.+||||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 282
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.08 E-value=0.0003 Score=49.44 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999774
No 283
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.07 E-value=0.00035 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++||||||+++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998763
No 284
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.07 E-value=0.00044 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...+|++.|++||||||+++++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999964
No 285
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.07 E-value=0.00034 Score=48.03 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999765
No 286
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.07 E-value=0.00033 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 287
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.07 E-value=0.00036 Score=47.42 Aligned_cols=20 Identities=30% Similarity=0.760 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 032789 12 KLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~ 31 (133)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 288
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.06 E-value=0.0002 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH-hC
Q 032789 12 KLVLLGDVGAGKSSLVLRFV-KG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~-~~ 33 (133)
-++++|++||||||+++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57899999999999999998 53
No 289
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.06 E-value=0.00037 Score=50.84 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~~ 35 (133)
.++++|++|||||||++.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 588999999999999999997643
No 290
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.06 E-value=0.00034 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999775
No 291
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.06 E-value=0.00053 Score=45.63 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
....|.++|++||||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999764
No 292
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.05 E-value=0.0004 Score=46.75 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...+|+++|.+||||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999864
No 293
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.05 E-value=0.00047 Score=45.82 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|.++|++||||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 294
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.05 E-value=0.00048 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|++.|.+||||||+++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 295
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.04 E-value=0.00037 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999775
No 296
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.04 E-value=0.00033 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999775
No 297
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.04 E-value=0.0005 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...-|++.|++||||||+++.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999975
No 298
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.04 E-value=0.00047 Score=44.84 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|++.|.+||||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999999874
No 299
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.04 E-value=0.00039 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999865
No 300
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.03 E-value=0.00042 Score=49.47 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.++|+|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 688999999999999999875
No 301
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.03 E-value=0.00057 Score=44.53 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|++.|.+||||||+++.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 302
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.03 E-value=0.00049 Score=44.07 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
+|++.|.+||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 303
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.03 E-value=0.00034 Score=47.13 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|+++|.+||||||+++.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 304
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.03 E-value=0.00039 Score=49.70 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....-|.|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456788999999999999998875
No 305
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.03 E-value=0.00041 Score=48.01 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 306
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.03 E-value=0.00041 Score=47.98 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-|+++|++||||||+++.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 307
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.03 E-value=0.00034 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999999874
No 308
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.03 E-value=0.00042 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 309
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.02 E-value=0.00037 Score=48.69 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999999764
No 310
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.02 E-value=0.00038 Score=47.53 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999775
No 311
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.01 E-value=0.00035 Score=47.10 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 312
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.01 E-value=0.00037 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999775
No 313
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.01 E-value=0.00035 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-+++++|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 314
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.01 E-value=0.00052 Score=44.27 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 315
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.01 E-value=0.00056 Score=48.99 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=22.0
Q ss_pred CCCCCCCceeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 1 m~~~~~~~~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
|..+++.....-|+|+|+++||||+|+..+...
T Consensus 1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 1 MSDISKASLPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp ------CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCccccCCCCcEEEEECCCccCHHHHHHHHHHh
Confidence 333334444456889999999999999999754
No 316
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.00 E-value=0.00057 Score=45.12 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..|++.|.+||||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 317
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.00 E-value=0.00066 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHH
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~ 31 (133)
.....|.|+|++||||||+++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998765
No 318
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.00 E-value=0.00054 Score=47.17 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 7 ~~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
......|.|.|.+||||||+++.+..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 33557899999999999999998865
No 319
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.99 E-value=0.00046 Score=45.22 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|++.|.+||||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 320
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.98 E-value=0.00042 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 321
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.98 E-value=0.0002 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998764
No 322
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.97 E-value=0.00047 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999874
No 323
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.97 E-value=0.00043 Score=47.93 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999775
No 324
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.97 E-value=0.00077 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+.++|++|||||||++.+.+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 447899999999999999999984
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.97 E-value=0.00042 Score=48.53 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999775
No 326
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.96 E-value=0.00057 Score=46.22 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 327
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.96 E-value=0.00049 Score=48.46 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999775
No 328
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.95 E-value=0.00055 Score=44.88 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-|++.|.+||||||+++++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 329
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.93 E-value=0.0006 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|++.|.+||||||+++.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 330
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.92 E-value=0.00049 Score=48.03 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999765
No 331
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.92 E-value=0.00059 Score=48.38 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
.++++|++|||||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998753
No 332
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.92 E-value=0.0005 Score=47.67 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 333
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.91 E-value=0.00059 Score=46.77 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|.++|++||||||+++.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998876
No 334
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.91 E-value=0.00056 Score=48.58 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 032789 12 KLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~ 31 (133)
-++++|++|||||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 335
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.91 E-value=0.00066 Score=43.64 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.|++.|.+||||||+++.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 336
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.91 E-value=0.00045 Score=44.82 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=16.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|++.|.+||||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 337
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.91 E-value=0.00052 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3689999999999999999875
No 338
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.91 E-value=0.00071 Score=45.98 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|+++|.+||||||+++.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 339
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.90 E-value=0.0007 Score=44.19 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 340
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.90 E-value=0.00062 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++|+||||+++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 341
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.90 E-value=0.00065 Score=44.25 Aligned_cols=21 Identities=48% Similarity=0.643 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.|+++|.+||||||+++.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 342
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.90 E-value=0.0006 Score=48.59 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.-.++++|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34788999999999999999874
No 343
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.88 E-value=0.00068 Score=46.76 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.....|+++|.+||||||+++.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
No 344
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.88 E-value=0.00063 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
.+.++|++|+|||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997753
No 345
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.87 E-value=0.00051 Score=43.81 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998864
No 346
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.87 E-value=0.00065 Score=47.58 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
No 347
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.87 E-value=0.00021 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-|+|.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 348
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.86 E-value=0.00073 Score=44.92 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|++.|.+||||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 349
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.85 E-value=0.00095 Score=47.95 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...+-|.++|++||||||+++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988753
No 350
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.85 E-value=0.00068 Score=49.39 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999999875
No 351
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.85 E-value=0.00087 Score=46.43 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|+++|.+||||||+++.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 352
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00073 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
--++++|++||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998874
No 353
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.83 E-value=0.00073 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3689999999999999999875
No 354
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.00073 Score=49.33 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4689999999999999999875
No 355
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.83 E-value=0.00097 Score=44.32 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...-|.++|++||||||+++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 356
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.83 E-value=0.0012 Score=48.10 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.1
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHH
Q 032789 4 TGNKNINAKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 4 ~~~~~~~~ki~i~G~~~vGKTsli~~l~ 31 (133)
++......|++++|..+|||||+++++.
T Consensus 3 ~~~~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 3 MGSGIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCCCCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCCceeEEEECCCCCcHHHHHHHHH
Confidence 4556678899999999999999998865
No 357
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.83 E-value=0.00072 Score=49.30 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4689999999999999999875
No 358
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.82 E-value=0.00061 Score=43.88 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988754
No 359
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.81 E-value=0.001 Score=43.52 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..+.++|.+|+||||++.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999875
No 360
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.80 E-value=0.001 Score=42.73 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.-.|++.|.+||||||+++.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 361
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.80 E-value=0.00084 Score=44.96 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-++++|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999884
No 362
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.79 E-value=0.00093 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 032789 11 AKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~ 31 (133)
..|.|+|++||||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 363
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.79 E-value=0.0008 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 3689999999999999999875
No 364
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.79 E-value=0.00083 Score=48.37 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..--++++|++||||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998875
No 365
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.79 E-value=0.00082 Score=49.23 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999999875
No 366
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.78 E-value=0.00092 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHH
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~ 31 (133)
.+..||+++|.+++||||+++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 457899999999999999998864
No 367
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.77 E-value=0.00097 Score=43.29 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|+++|.+||||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998865
No 368
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.77 E-value=0.0012 Score=44.30 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...|++.|.+||||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999875
No 369
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.77 E-value=0.001 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+++.|++|+|||++++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
No 370
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.77 E-value=0.00048 Score=49.18 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6889999999999999988764
No 371
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.76 E-value=0.00077 Score=47.71 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++|||||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999764
No 372
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.76 E-value=0.00088 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++|+||||+++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999864
No 373
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.76 E-value=0.00086 Score=48.81 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++||||||+++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999988753
No 374
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.74 E-value=0.00097 Score=46.46 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++|+||||+++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999864
No 375
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.74 E-value=0.00095 Score=48.81 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 3689999999999999999875
No 376
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.74 E-value=0.00022 Score=50.98 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.++++|++|||||||++.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 36899999999999999999865
No 377
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.74 E-value=0.0012 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...-|.++|++||||||+++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998876
No 378
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.73 E-value=0.0011 Score=45.50 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..+++.|++|+|||++++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36999999999999999998763
No 379
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.70 E-value=0.0011 Score=44.30 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.-|+++|.+||||||+++.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998864
No 380
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.70 E-value=0.00066 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..-|.+.|++||||||+++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999998764
No 381
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.69 E-value=0.00033 Score=49.77 Aligned_cols=57 Identities=7% Similarity=-0.070 Sum_probs=37.4
Q ss_pred CCCcccccccccccccccCEEEEEEECCChhhHH---HHHHHHHHHHHh--CCCcccccccc
Q 032789 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE---RAKKWVQELQAQ--GIHIQSLLQRF 122 (133)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~iv~v~d~~~~~s~~---~~~~~~~~i~~~--~~~~~~~l~~~ 122 (133)
.+||+.++..|+.+++++|++|+|+|.+|++.++ ++.+...-+.+. ..++|.++.-+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfAN 255 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSC 255 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeC
Confidence 3578899999999999999999999999987544 222221222121 35667666654
No 382
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.69 E-value=0.00092 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.++++|++|+||||+++.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999999875
No 383
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.69 E-value=0.00096 Score=49.18 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999864
No 384
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.68 E-value=0.0012 Score=44.02 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.68 E-value=0.0011 Score=48.38 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.++++|++||||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999876
No 386
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.68 E-value=0.0015 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-|+|+|++||||||++..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999998753
No 387
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.68 E-value=0.0011 Score=46.47 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|+++|.+||||||+++++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 388
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.67 E-value=0.00066 Score=49.29 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999999875
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.66 E-value=0.0015 Score=45.92 Aligned_cols=24 Identities=38% Similarity=0.304 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....|+|.|.+||||||+++.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 390
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.65 E-value=0.0014 Score=43.23 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..+++.|++|+|||++++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.64 E-value=0.0014 Score=44.92 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....|.+.|++||||||+++.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
No 392
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.63 E-value=0.0013 Score=44.41 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999873
No 393
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0012 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
--++++|++||||||+++.+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4688999999999999998875
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0012 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
-.|+++|.+||||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.63 E-value=0.0013 Score=42.79 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-.+|+|++|+||||+++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999864
No 396
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.61 E-value=0.0014 Score=43.21 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988753
No 397
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.61 E-value=0.0014 Score=43.74 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+++.|++|+|||++++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 398
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.61 E-value=0.0012 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-++++|++|+|||||++.+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988753
No 399
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.60 E-value=0.0014 Score=44.63 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...-|++.|.+||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998753
No 400
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.56 E-value=0.0014 Score=49.72 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
--++|+|.+||||||+++.+.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4688999999999999998874
No 401
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.56 E-value=0.0016 Score=45.22 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999764
No 402
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0012 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.++++|++|||||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36889999999999999999875
No 403
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.55 E-value=0.0011 Score=47.75 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++|+||||+++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 404
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.54 E-value=0.0015 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
-++.++|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998863
No 405
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.53 E-value=0.002 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999986654
No 406
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.53 E-value=0.0018 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|+++|++||||||++..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 407
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.52 E-value=0.00068 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|||||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999999875
No 408
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.52 E-value=0.0017 Score=40.86 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
...|++.|++|+|||++++.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4569999999999999999997653
No 409
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.52 E-value=0.0018 Score=45.35 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 410
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.50 E-value=0.002 Score=44.06 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+++.|++|+|||++++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998763
No 411
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.49 E-value=0.0017 Score=48.33 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-++++|++|+||||+++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998864
No 412
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.48 E-value=0.0024 Score=42.46 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+.|.+.|..||||||+++.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999988753
No 413
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.47 E-value=0.0029 Score=43.83 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.....+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999998764
No 414
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.43 E-value=0.0019 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
-++.++|++|||||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368899999999999999998863
No 415
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.43 E-value=0.0027 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+++.|++|+|||++++.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346778899999999999998764
No 416
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.41 E-value=0.0031 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999988764
No 417
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.41 E-value=0.0017 Score=49.44 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.++++|++||||||+++.+.+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999764
No 418
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.40 E-value=0.0016 Score=46.57 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
..-+++.|..|+||||+++.+.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3457899999999999999999753
No 419
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.40 E-value=0.0023 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.+++.|++|+|||++++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 36899999999999999999864
No 420
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.39 E-value=0.0021 Score=45.67 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.+++.|++|+|||++++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998763
No 421
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.38 E-value=0.0027 Score=42.67 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..|+|+|++++|||+++..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999865
No 422
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.35 E-value=0.0014 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
..++++|++||||||+++.+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999998863
No 423
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.35 E-value=0.0024 Score=44.60 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998753
No 424
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.33 E-value=0.0025 Score=42.03 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 032789 13 LVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~~ 33 (133)
++|+|.+++|||+++.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 425
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.33 E-value=0.0022 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.+++.|++|+|||++++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 426
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.32 E-value=0.0026 Score=45.98 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-|+|+|+++||||+|...+...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 427
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.32 E-value=0.003 Score=42.94 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.....|.++|.+||||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999998875
No 428
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.32 E-value=0.0023 Score=44.58 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 429
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.32 E-value=0.0034 Score=45.73 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....+|+++|.+|+||||+++.+..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999987664
No 430
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.31 E-value=0.0031 Score=41.60 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.|.+.|.+||||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 431
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.30 E-value=0.0028 Score=45.46 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-|+|+|+++||||+|+..+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999999764
No 432
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.29 E-value=0.0025 Score=43.05 Aligned_cols=21 Identities=29% Similarity=0.503 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-++++|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888764
No 433
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.28 E-value=0.0037 Score=46.27 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..-|+++|.+||||||+++++...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999998753
No 434
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.27 E-value=0.0029 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 435
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.26 E-value=0.0027 Score=46.53 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
-.++++|++|+||||+++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3688999999999999999875
No 436
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.24 E-value=0.003 Score=40.14 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 032789 13 LVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~ 31 (133)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999998865
No 437
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.24 E-value=0.0024 Score=49.21 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999764
No 438
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.24 E-value=0.0031 Score=45.02 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.+++.|++|+|||++++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 47999999999999999999864
No 439
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.23 E-value=0.0028 Score=48.83 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999874
No 440
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.22 E-value=0.0032 Score=44.82 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999764
No 441
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.22 E-value=0.0025 Score=43.07 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
-.+++.|++|+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888765
No 442
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.0024 Score=45.66 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 032789 13 LVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~~ 32 (133)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 443
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.21 E-value=0.011 Score=44.49 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=37.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh------------------CCCCC---cccCceeeeEEEEEEE--E-CCeEEEEEEE
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK------------------GQFIE---FQESTIGAAFFSQTLA--V-NDATVKFEIW 64 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~------------------~~~~~---~~~~~~~~~~~~~~~~--~-~~~~~~~~l~ 64 (133)
.-.-|.|+|+.++|||+|++.+++ ..|.- ...-|.|+-.....+. . ++....+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 445667999999999999996541 12211 1112344433322221 1 4567889999
Q ss_pred eCCCccc
Q 032789 65 DTAGQER 71 (133)
Q Consensus 65 d~~g~~~ 71 (133)
||.|...
T Consensus 146 DTEG~~d 152 (457)
T 4ido_A 146 DTQGTFD 152 (457)
T ss_dssp EECCBTC
T ss_pred eccCCCC
Confidence 9999543
No 444
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.20 E-value=0.0031 Score=47.76 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-+.++|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998875
No 445
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.19 E-value=0.0032 Score=45.38 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+++.|++|+|||++++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 446
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.19 E-value=0.0037 Score=45.42 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=20.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHH
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~ 31 (133)
.+.+|++++|..+|||||+++++.
T Consensus 30 ~~~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHHHH
Confidence 458999999999999999998765
No 447
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.19 E-value=0.0029 Score=44.81 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
-.++++|++||||||++..+..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999988763
No 448
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0036 Score=46.78 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-.|++.|+||+|||.+++.+.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999999864
No 449
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.0032 Score=45.08 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 450
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.17 E-value=0.0035 Score=44.70 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
--|+++|++||||||++..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 3588999999999999988774
No 451
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0037 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.|++.|+||+|||++++.+.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 452
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.11 E-value=0.0037 Score=44.97 Aligned_cols=23 Identities=17% Similarity=0.550 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 453
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.10 E-value=0.0031 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-.+++.|++|+|||++++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999998764
No 454
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.09 E-value=0.0026 Score=49.14 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999764
No 455
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0042 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.|++.|+||+|||++++.+.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999864
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.08 E-value=0.0024 Score=44.15 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
+...|++.|.+||||||+++.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998865
No 457
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.08 E-value=0.004 Score=44.08 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
--++|.|++|+|||||++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 35889999999999999999764
No 458
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.08 E-value=0.0039 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-+++++|++|+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999888753
No 459
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.004 Score=44.36 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988754
No 460
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.04 E-value=0.003 Score=48.87 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999998764
No 461
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.03 E-value=0.0042 Score=44.20 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..+++.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999654
No 462
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.03 E-value=0.0043 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.583 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998764
No 463
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.03 E-value=0.0017 Score=44.71 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999875
No 464
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.02 E-value=0.0039 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|+|||||++.+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 465
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.02 E-value=0.0018 Score=40.70 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999988543
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0041 Score=48.33 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999999874
No 467
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.01 E-value=0.0037 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-+.++|++|+|||||++.+.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4679999999999999999874
No 468
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.01 E-value=0.0045 Score=44.74 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
....+++.|++|+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998754
No 469
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.97 E-value=0.0057 Score=41.89 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
...++.++|++||||||+++++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.97 E-value=0.0046 Score=42.08 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..|++.|..||||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 471
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.96 E-value=0.0047 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..|++.|++|+|||++++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998764
No 472
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.95 E-value=0.0025 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=17.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..-|.|.|++||||||+++.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998865
No 473
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.95 E-value=0.0051 Score=42.34 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..+++.|++|+|||++++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 57999999999999999999765
No 474
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.93 E-value=0.0055 Score=44.32 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
...+++.|++|+|||++++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999999764
No 475
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.93 E-value=0.0046 Score=44.56 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.+++.|++|+|||++++.+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998763
No 476
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.92 E-value=0.0043 Score=47.54 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|||||||++.+.+.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 477
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.92 E-value=0.0047 Score=47.32 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..++++|++|+||||+++.+..
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 478
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.92 E-value=0.0054 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
.+.++|++|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 479
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.92 E-value=0.0052 Score=41.00 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..|.+.|.+||||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 480
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.91 E-value=0.0047 Score=43.81 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999998753
No 481
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.90 E-value=0.0059 Score=43.41 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999988765
No 482
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0052 Score=45.49 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
-.|++.|+||+|||.+++.+.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 46999999999999999999764
No 483
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.89 E-value=0.0072 Score=41.15 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=20.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
....-|++.|.+||||||+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455688999999999999988864
No 484
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.86 E-value=0.0026 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6889999999999999988664
No 485
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.85 E-value=0.0056 Score=44.55 Aligned_cols=19 Identities=47% Similarity=0.504 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 032789 13 LVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 13 i~i~G~~~vGKTsli~~l~ 31 (133)
.+|+|++|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5589999999999999876
No 486
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.85 E-value=0.0053 Score=45.77 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.84 E-value=0.0053 Score=47.73 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999999874
No 488
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.84 E-value=0.006 Score=45.11 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHH
Q 032789 8 NINAKLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 8 ~~~~ki~i~G~~~vGKTsli~~l~ 31 (133)
.+.+|++++|..+|||||+++++.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 457999999999999999998864
No 489
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.83 E-value=0.0056 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~~ 34 (133)
.+.++|++|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 490
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.83 E-value=0.0071 Score=39.81 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-+++.|++|+||||++..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999998864
No 491
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.82 E-value=0.0054 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
.-+|+++|++|+|||++++.+..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999875
No 492
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.82 E-value=0.0052 Score=45.40 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 032789 12 KLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~ 31 (133)
-+.|+|++|+|||||+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999876
No 493
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.81 E-value=0.0058 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998864
No 494
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.81 E-value=0.0034 Score=48.47 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 032789 12 KLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.+.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999988764
No 495
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.80 E-value=0.008 Score=40.52 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 032789 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 9 ~~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
+..-|++-|.+||||||+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 345688999999999999999864
No 496
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.80 E-value=0.0048 Score=42.13 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=17.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..-|++-|.+||||||+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998864
No 497
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.76 E-value=0.0069 Score=40.89 Aligned_cols=20 Identities=30% Similarity=0.760 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 032789 12 KLVLLGDVGAGKSSLVLRFV 31 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~ 31 (133)
-+++.|++|+|||+|+.+++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999998875
No 498
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.74 E-value=0.006 Score=45.19 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 032789 12 KLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 12 ki~i~G~~~vGKTsli~~l~~ 32 (133)
-|+|+|++|||||||+..+..
T Consensus 4 ~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHH
Confidence 478999999999999999874
No 499
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.73 E-value=0.0046 Score=43.60 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 032789 11 AKLVLLGDVGAGKSSLVLRFVK 32 (133)
Q Consensus 11 ~ki~i~G~~~vGKTsli~~l~~ 32 (133)
..+++.|++|+|||++++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 500
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.73 E-value=0.0037 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 032789 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (133)
Q Consensus 10 ~~ki~i~G~~~vGKTsli~~l~~~ 33 (133)
.-.++++|.+||||||+++.+.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 357899999999999999988753
Done!