BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032791
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 51/77 (66%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRR 99
+Q +I N +VIFSK+ C YC AK++F D+N VVELDL + G Q Q L + G R
Sbjct: 42 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 101
Query: 100 TVPQIFVNGEHIGGADD 116
TVP+IFVNG IGGA D
Sbjct: 102 TVPRIFVNGTFIGGATD 118
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 51/77 (66%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRR 99
+Q +I N +VIFSK+ C YC AK++F D+N VVELDL + G Q Q L + G R
Sbjct: 20 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 79
Query: 100 TVPQIFVNGEHIGGADD 116
TVP+IFVNG IGGA D
Sbjct: 80 TVPRIFVNGTFIGGATD 96
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 51/77 (66%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRR 99
+Q +I N +VIFSK+ C YC AK++F D+N VVELDL + G Q Q L + G R
Sbjct: 28 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 87
Query: 100 TVPQIFVNGEHIGGADD 116
TVP+IFVNG IGGA D
Sbjct: 88 TVPRIFVNGTFIGGATD 104
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%)
Query: 44 IFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQ 103
I +++VIFSKSYCP+ R K +F+ L + V+ELD DDGA++Q +L ++ ++TVP
Sbjct: 14 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPN 73
Query: 104 IFVNGEHIGGADDLKAAVLSG 124
IFVN H+GG D A SG
Sbjct: 74 IFVNKVHVGGCDQTFQAYQSG 94
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD-LRDDGAQIQYILLDLVGR 98
++ ++ N +VI+SK++C YC K +F L QP VVELD L G Q+Q +L L G+
Sbjct: 12 IRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQ 71
Query: 99 RTVPQIFVNGEHIGGADD 116
TVP +FV G+HIGG D
Sbjct: 72 HTVPNVFVCGKHIGGCTD 89
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD-LRDDGAQIQYILLDLVGR 98
V+ ++ N +V++SK++C Y K +F LN P VVELD L G QIQ +L L G+
Sbjct: 11 VKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQ 70
Query: 99 RTVPQIFVNGEHIGGADD 116
TVP +F+ G+HIGG D
Sbjct: 71 HTVPNVFIGGKHIGGCTD 88
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%)
Query: 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIF 105
S +V+FSK+YC YC R K++ + VVELD DG+Q+Q L GR TVP +F
Sbjct: 19 SAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVF 78
Query: 106 VNGEHIGGAD 115
+ G+ IGG D
Sbjct: 79 IGGKQIGGCD 88
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%)
Query: 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIF 105
S +V+FSK+YC YC R K++ + VVELD DG+Q+Q L GR TVP +F
Sbjct: 20 SAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVF 79
Query: 106 VNGEHIGGAD 115
+ G+ IGG D
Sbjct: 80 IGGKQIGGCD 89
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRA-KRIFADLN---EQPFVVELDLRDDGAQIQYILLDL 95
V++ I N+I + SK+YCPYC A +F L + V++L+ +GA IQ L ++
Sbjct: 18 VKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 77
Query: 96 VGRRTVPQIFVNGEHIGGADDLK 118
G+RTVP I++NG+HIGG DDL+
Sbjct: 78 NGQRTVPNIYINGKHIGGNDDLQ 100
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 4/91 (4%)
Query: 38 AFVQNSIFSNKIVIFSKSYCPYCLRA-KRIFADLN---EQPFVVELDLRDDGAQIQYILL 93
A V++ I ++ + +K+YCPYC +F +LN + V+ELD +G++IQ L
Sbjct: 28 AHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALE 87
Query: 94 DLVGRRTVPQIFVNGEHIGGADDLKAAVLSG 124
++ G++TVP +++NG+HIGG DL+ +G
Sbjct: 88 EISGQKTVPNVYINGKHIGGNSDLETLKKNG 118
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 4/91 (4%)
Query: 38 AFVQNSIFSNKIVIFSKSYCPYCLRA-KRIFADLN---EQPFVVELDLRDDGAQIQYILL 93
A V++ I ++ + +K+YCPYC +F +LN + V+ELD +G++IQ L
Sbjct: 8 AHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALE 67
Query: 94 DLVGRRTVPQIFVNGEHIGGADDLKAAVLSG 124
++ G++TVP +++NG+HIGG DL+ +G
Sbjct: 68 EISGQKTVPNVYINGKHIGGNSDLETLKKNG 98
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRA-KRIFADLN---EQPFVVELDLRDDGAQIQYILLDL 95
V++ I N+I + SK+YCPY A +F L + V++L+ +GA IQ L ++
Sbjct: 10 VKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 69
Query: 96 VGRRTVPQIFVNGEHIGGADDLK 118
G+RTVP I++NG+HIGG DDL+
Sbjct: 70 NGQRTVPNIYINGKHIGGNDDLQ 92
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRA-KRIFADLN---EQPFVVELDLRDDGAQIQYILLDL 95
V++ I N+I + SK+YCPY A +F L + V++L+ +GA IQ L ++
Sbjct: 254 VKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 313
Query: 96 VGRRTVPQIFVNGEHIGGADDLK 118
G+RTVP I++NG+HIGG DDL+
Sbjct: 314 NGQRTVPNIYINGKHIGGNDDLQ 336
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 38 AFVQNSIFSNKIVIFSKSYCPYCLRA-KRIFADLN---EQPFVVELDLRDDGAQIQYILL 93
A V++ I ++ + +K+YCPY +F +LN + V+ELD +G++IQ L
Sbjct: 11 AHVKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALE 70
Query: 94 DLVGRRTVPQIFVNGEHIGGADDLKAAVLSG 124
++ G++TVP +++NG+HIGG DL+ +G
Sbjct: 71 EISGQKTVPNVYINGKHIGGNSDLETLKKNG 101
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 37 SAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPF------VVELDLRDDGAQIQY 90
AFV + I K+V+F K CP+C + + + + L PF V++ D +IQ
Sbjct: 2 QAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQL---PFKEGLLEFVDITATSDTNEIQD 58
Query: 91 ILLDLVGRRTVPQIFVNGEHIGGADDLKA 119
L L G RTVP++F+ E IGG DL++
Sbjct: 59 YLQQLTGARTVPRVFIGKECIGGCTDLES 87
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDL 95
S +++ ++ S +++FSK+ CPYC + K + A+ + +ELD +G+ IQ L
Sbjct: 7 TSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASF 66
Query: 96 VGRRTVPQIFVNGEHIG 112
TVPQ+FV G+ IG
Sbjct: 67 SKIETVPQMFVRGKFIG 83
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDL 95
S +++ ++ S +++FSK+ CPYC + K + A+ + +ELD +G+ IQ L
Sbjct: 7 TSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASF 66
Query: 96 VGRRTVPQIFVNGEHIG 112
TVPQ+FV G+ IG
Sbjct: 67 SKIETVPQMFVRGKFIG 83
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDL 95
S +++ ++ S +++FSK+ CPYC + K + A+ + +ELD +G+ IQ L
Sbjct: 7 TSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASF 66
Query: 96 VGRRTVPQIFVNGEHIG 112
TVPQ+FV G+ IG
Sbjct: 67 SKIETVPQMFVRGKFIG 83
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 28/130 (21%)
Query: 3 KRGWQSRFLVEAVGLLFFLLLGNAP----TATEADHSVSAFVQNSIFSNKIVIFSKSYCP 58
KR W+ LV+ + + N P ++AD + I IF+K CP
Sbjct: 122 KRSWRYSXLVKNGVVEKXFIEPNEPGDPFKVSDADTXLKYLAPQHQVQESISIFTKPGCP 181
Query: 59 YCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLD----------LVGRRTVPQIFVNG 108
+C +AK++ L D G + I+L + GR TVPQ+F+ G
Sbjct: 182 FCAKAKQL--------------LHDKGLSFEEIILGHDATIVSVRAVSGRTTVPQVFIGG 227
Query: 109 EHIGGADDLK 118
+HIGG+DDL+
Sbjct: 228 KHIGGSDDLE 237
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 39 FVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVE---LDLRDDGAQIQYILLDL 95
FV I K+V+F K CPYC RA+ I + L + ++E + + +IQ L L
Sbjct: 5 FVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQL 64
Query: 96 VGRRTVPQIFVNGEHIGGADDLKAAVLSG 124
G RTVP++F+ + IGG DL + SG
Sbjct: 65 TGARTVPRVFIGKDCIGGCSDLVSLQQSG 93
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 39 FVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVE---LDLRDDGAQIQYILLDL 95
FV + I K+V+F K CPY RA+ I + L + ++E + + +IQ L L
Sbjct: 4 FVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQL 63
Query: 96 VGRRTVPQIFVNGEHIGGADDLKAAVLSG 124
G RTVP++F+ + IGG+ DL + SG
Sbjct: 64 TGARTVPRVFIGKDSIGGSSDLVSLQQSG 92
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 49 IVIFSKSYCPYCLRAKRIFAD----LNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQI 104
+ I++K CPYC RAK + + E P D A + ++ GR TVPQI
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPI-------DGNAAKREEMIKRSGRTTVPQI 55
Query: 105 FVNGEHIGGADDLKA 119
F++ +HIGG DDL A
Sbjct: 56 FIDAQHIGGYDDLYA 70
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Query: 49 IVIFSKSYCPYCLRAK----RIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQI 104
++I+++ CPYC RAK R A+ NE +LR A++Q + GR T PQI
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELR---AEMQ----ERSGRNTFPQI 60
Query: 105 FVNGEHIGGADDLKA 119
F+ H+GG DDL A
Sbjct: 61 FIGSVHVGGCDDLYA 75
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 49 IVIFSKSYCPYCLRAKRIFAD----LNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQI 104
+ I++K CPY RAK + + E P D A + ++ GR TVPQI
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPI-------DGNAAKREEMIKRSGRTTVPQI 55
Query: 105 FVNGEHIGGADDLKA 119
F++ +HIGG DDL A
Sbjct: 56 FIDAQHIGGYDDLYA 70
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN 107
+I+++++ CPYC RA+ DL ++ V D+ + Q ++ GR T PQIF+
Sbjct: 7 EIILYTRPNCPYCKRAR----DLLDKKGVKYTDIDASTSLRQEMVQRANGRNTFPQIFIG 62
Query: 108 GEHIGGADDLKA 119
H+GG DDL A
Sbjct: 63 DYHVGGCDDLYA 74
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 10/79 (12%)
Query: 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQ--YILLDLVGR-----RT 100
K+ I++++ CPYC+ AK+ F + N + + DD AQ Y + G+ T
Sbjct: 5 KVKIYTRNGCPYCVWAKQWFEENN---IAFDETIIDDYAQRSKFYDEXNQSGKVIFPIST 61
Query: 101 VPQIFVNGEHIGGADDLKA 119
VPQIF++ EHIGG +LKA
Sbjct: 62 VPQIFIDDEHIGGFTELKA 80
>pdb|1EGO|A Chain A, Nmr Structure Of Oxidized Escherichia Coli Glutaredoxin:
Comparison With Reduced E. Coli Glutaredoxin And
Functionally Related Proteins
pdb|1EGR|A Chain A, Sequence-Specific 1h N.M.R. Assignments And Determination
Of The Three-Dimensional Structure Of Reduced
Escherichia Coli Glutaredoxin
Length = 85
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 22/87 (25%)
Query: 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYI-----------LLDLV 96
+ VIF +S CPYC+RAK + L+ + RDD Q QY+ L
Sbjct: 2 QTVIFGRSGCPYCVRAKDLAEKLSNE--------RDD-FQYQYVDIRAEGITKEDLQQKA 52
Query: 97 GR--RTVPQIFVNGEHIGGADDLKAAV 121
G+ TVPQIFV+ +HIGG D A V
Sbjct: 53 GKPVETVPQIFVDQQHIGGYTDFAAWV 79
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 49 IVIFSKSYCPYCLRAKRIFADLNEQPFV-----VELDLRDDGAQIQYILLDLVGRRTVPQ 103
I+IFSKS C Y K + NE F+ +ELD G ++Q + + GR TVP
Sbjct: 16 IIIFSKSTCSYSKGXKELLE--NEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPN 73
Query: 104 IFVNGEHIGGADDLKAAVLSG 124
+ VNG GG +++K G
Sbjct: 74 LLVNGVSRGGNEEIKKLHTQG 94
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 43 SIFSNKIVIFSKSYCPYCLRA----KRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR 98
S S KI I++ S CP+C+RA KR + E + ++ D + + G+
Sbjct: 12 SAVSAKIEIYTWSTCPFCMRALALLKRKGVEFQE--YCID----GDNEAREAMAARANGK 65
Query: 99 RTVPQIFVNGEHIGGADDLKA 119
R++PQIF++ +HIGG DD+ A
Sbjct: 66 RSLPQIFIDDQHIGGCDDIYA 86
>pdb|1QFN|A Chain A, Glutaredoxin-1-Ribonucleotide Reductase B1 Mixed Disulfide
Bond
pdb|1GRX|A Chain A, Structure Of E. Coli Glutaredoxin
Length = 85
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYI-----------LLDLV 96
+ VIF +S CPY +RAK + L+ + RDD Q QY+ L
Sbjct: 2 QTVIFGRSGCPYSVRAKDLAEKLSNE--------RDD-FQYQYVDIRAEGITKEDLQQKA 52
Query: 97 GR--RTVPQIFVNGEHIGGADDLKAAV 121
G+ TVPQIFV+ +HIGG D A V
Sbjct: 53 GKPVETVPQIFVDQQHIGGYTDFAAWV 79
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 39 FVQNSIFSNKIVIFSKSYCPYCLRAKRI----------FADLNEQPFVVELDLRDDGAQI 88
FVQ + +NK+ IF K CP+C A I + ++ + F E +LRD QI
Sbjct: 11 FVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQI 70
Query: 89 QYILLDLVGRRTVPQIFVNGEHIGGADDL 117
G +TVP+IF IGG DL
Sbjct: 71 -------TGGKTVPRIFFGKTSIGGYSDL 92
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 17/89 (19%)
Query: 39 FVQNSIFSNKIVIFSKSYCPYCLRAKRI----------FADLNEQPFVVELDLRDDGAQI 88
FVQ + +NK+ IF K P+C A I + ++ + F E +LRD QI
Sbjct: 11 FVQQRLANNKVTIFVKYTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQI 70
Query: 89 QYILLDLVGRRTVPQIFVNGEHIGGADDL 117
G +TVP+IF IGG DL
Sbjct: 71 -------TGGKTVPRIFFGKTSIGGYSDL 92
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 48 KIVIFSKSYCPYCLRAKRIFADL-NEQPFVVELD----LRDDGAQIQYILLDLVGRRTVP 102
KI +F+ CP+C AKR+ ++ NE P VE++ + + ++Y G VP
Sbjct: 5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEY------GIMAVP 58
Query: 103 QIFVNG--EHIGG 113
I +NG E IG
Sbjct: 59 TIVINGDVEFIGA 71
>pdb|2LQO|A Chain A, Mrx1 Reduced
pdb|2LQQ|A Chain A, Oxidized Mrx1
Length = 92
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 17/83 (20%)
Query: 49 IVIFSKSYCPYCLR------AKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVP 102
+ I++ S+C YCLR A RI D E+D+ + A +++ G RTVP
Sbjct: 6 LTIYTTSWCGYCLRLKTALTANRIAYD--------EVDIEHNRAAAEFVGSVNGGNRTVP 57
Query: 103 QI-FVNGEHIG--GADDLKAAVL 122
+ F +G + AD++KA ++
Sbjct: 58 TVKFADGSTLTNPSADEVKAKLV 80
>pdb|1AAZ|A Chain A, The Structure Of Oxidized Bacteriophage T4 Glutaredoxin
(Thioredoxin)
pdb|1AAZ|B Chain B, The Structure Of Oxidized Bacteriophage T4 Glutaredoxin
(Thioredoxin)
pdb|1DE1|A Chain A, Nmr Structures Of Oxidized Bacteriophage T4 Glutaredoxin
pdb|1DE2|A Chain A, Nmr Structures Of Reduced Bacteriophage T4 Glutaredoxin
Length = 87
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 14/73 (19%)
Query: 57 CPYCLRAKRIFADLNEQPF-----VVELDLRDDGAQIQYILLDLVGRRT-----VPQIFV 106
C YC AKR+ + +QPF + E + DD + LL +GR T +PQ+F
Sbjct: 14 CVYCDNAKRLLT-VKKQPFEFINIMPEKGVFDDEKIAE--LLTKLGRDTQIGLTMPQVFA 70
Query: 107 -NGEHIGGADDLK 118
+G HIGG D L+
Sbjct: 71 PDGSHIGGFDQLR 83
>pdb|1G7O|A Chain A, Nmr Solution Structure Of Reduced E. Coli Glutaredoxin 2
Length = 215
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVP 102
K+ I+ +CPYCL+A+ IF L P + + L DD +VG++ VP
Sbjct: 2 KLYIYD--HCPYCLKARMIFG-LKNIPVELHVLLNDDAETPTR----MVGQKQVP 49
>pdb|1ABA|A Chain A, The Structure Of Oxidized Bacteriophage T4 Glutaredoxin
(Thioredoxin). Refinement Of Native And Mutant Proteins
Length = 87
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 57 CPYCLRAKRIFADLNEQPF-----VVELDLRDDGAQIQYILLDLVGRRT-----VPQIFV 106
C C AKR+ + +QPF + E + DD + LL +GR T +PQ+F
Sbjct: 14 CGPCDNAKRLLT-VKKQPFEFINIMPEKGVFDDEKIAE--LLTKLGRDTQIGLTMPQVFA 70
Query: 107 -NGEHIGGADDLK 118
+G HIGG D L+
Sbjct: 71 PDGSHIGGFDQLR 83
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 44 IFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPF----VVELDLRDDGAQIQYILLD 94
+ S+K+V+F K C + +I LN PF ++E +L G L +
Sbjct: 15 VTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLN-APFESVNILENELLRQG------LKE 67
Query: 95 LVGRRTVPQIFVNGEHIGGADDLKAAVLSG 124
T PQ++++GE GG D A SG
Sbjct: 68 YSSWPTFPQLYIDGEFFGGCDITVEAYKSG 97
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 100 TVPQIFVNGEHIGGADDLKAAVLSG 124
T+PQ++VN E IGG D + + SG
Sbjct: 74 TIPQLYVNKEFIGGCDVITSMARSG 98
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 84 DGAQIQYILLDLVGRRTVPQIFVNGEHIGGAD 115
D +++ + D T+PQ+++NGE +GG D
Sbjct: 60 DDPELRQGIKDYSNWPTIPQVYLNGEFVGGCD 91
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 40 VQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLD 94
+Q I N I+++ K C + +A + A E+ V++ D I+ L
Sbjct: 28 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPD---IRAELPK 84
Query: 95 LVGRRTVPQIFVNGEHIGGAD 115
T PQ++V+GE +GG D
Sbjct: 85 YANWPTFPQLWVDGELVGGCD 105
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 40 VQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLD 94
+Q I N I+++ K C + +A + A E+ V++ D I+ L
Sbjct: 8 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPD---IRAELPK 64
Query: 95 LVGRRTVPQIFVNGEHIGGAD 115
T PQ++V+GE +GG D
Sbjct: 65 YANWPTFPQLWVDGELVGGCD 85
>pdb|3IR4|A Chain A, 1.2 Angstrom Crystal Structure Of The Glutaredoxin 2
(Grxb) From Salmonella Typhimurium In Complex With
Glutathione
Length = 218
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVP 102
SN ++ +CP+C++A+ IF L P + + DD A +G++ VP
Sbjct: 1 SNAXKLYIYDHCPFCVKARXIFG-LKNIPVELNVLQNDDEATPTRX----IGQKXVP 52
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 100 TVPQIFVNGEHIGGADDLK 118
T PQ++V+GE IGG D +K
Sbjct: 71 TYPQLYVSGELIGGLDIIK 89
>pdb|2C5U|A Chain A, T4 Rna Ligase (Rnl1) Crystal Structure
pdb|2C5U|B Chain B, T4 Rna Ligase (Rnl1) Crystal Structure
Length = 375
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 62 RAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111
R F +LNE PF +DL D + YIL G ++ +++G+ I
Sbjct: 72 RPXEKFFNLNENPFTXNIDLND----VDYILTKEDG--SLVSTYLDGDEI 115
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 100 TVPQIFVNGEHIGGADDLKAAVLSG 124
T PQ++V GE +GG D +K +G
Sbjct: 72 TYPQLYVKGELVGGLDIVKELKENG 96
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 46 SNKIVIFSK-----SYCPYCLRAKRIFADLNEQPF----VVELDLRDDGAQIQYILLDLV 96
S K+V+F K C + +I +LN PF ++E ++ G L +
Sbjct: 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLN-VPFEDVNILENEMLRQG------LKEYS 69
Query: 97 GRRTVPQIFVNGEHIGGADDLKAAVLSG 124
T PQ+++ GE GG D A +G
Sbjct: 70 NWPTFPQLYIGGEFFGGCDITLEAFKTG 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,411,487
Number of Sequences: 62578
Number of extensions: 116672
Number of successful extensions: 366
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 49
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)