Query 032791
Match_columns 133
No_of_seqs 144 out of 1192
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:00:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 1.1E-28 2.3E-33 160.8 10.9 92 41-132 2-93 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 4.5E-28 9.7E-33 160.1 11.6 97 36-132 2-101 (108)
3 PRK10824 glutaredoxin-4; Provi 100.0 4.2E-28 9.2E-33 161.4 11.1 96 34-132 2-102 (115)
4 KOG1752 Glutaredoxin and relat 100.0 6.6E-28 1.4E-32 157.7 11.7 96 36-131 3-98 (104)
5 TIGR00365 monothiol glutaredox 99.9 1.7E-26 3.6E-31 150.0 11.8 91 37-130 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 99.9 1.4E-24 3.1E-29 139.0 10.1 84 41-127 2-90 (90)
7 PTZ00062 glutaredoxin; Provisi 99.9 1E-23 2.3E-28 153.0 12.0 96 33-131 99-199 (204)
8 TIGR02180 GRX_euk Glutaredoxin 99.9 2.8E-23 6.1E-28 130.2 10.4 82 49-130 1-84 (84)
9 PRK10638 glutaredoxin 3; Provi 99.9 6E-23 1.3E-27 129.4 11.1 82 47-131 2-83 (83)
10 TIGR02181 GRX_bact Glutaredoxi 99.9 5.2E-23 1.1E-27 128.3 9.9 79 49-130 1-79 (79)
11 cd03419 GRX_GRXh_1_2_like Glut 99.9 2.8E-22 6.1E-27 125.3 10.3 82 48-129 1-82 (82)
12 COG0278 Glutaredoxin-related p 99.9 5.1E-22 1.1E-26 127.0 9.9 97 34-132 2-103 (105)
13 cd03031 GRX_GRX_like Glutaredo 99.9 9E-22 1.9E-26 136.2 10.9 82 48-132 1-92 (147)
14 COG0695 GrxC Glutaredoxin and 99.9 1.5E-21 3.2E-26 122.5 9.2 77 48-126 2-79 (80)
15 cd03418 GRX_GRXb_1_3_like Glut 99.9 6E-21 1.3E-25 117.5 10.5 74 48-124 1-75 (75)
16 cd03027 GRX_DEP Glutaredoxin ( 99.8 1.2E-20 2.5E-25 116.2 9.5 72 47-121 1-72 (73)
17 TIGR02190 GlrX-dom Glutaredoxi 99.8 2.4E-20 5.3E-25 116.6 9.9 75 43-121 4-78 (79)
18 TIGR02183 GRXA Glutaredoxin, G 99.8 5.7E-20 1.2E-24 116.7 9.7 75 49-124 2-81 (86)
19 cd03029 GRX_hybridPRX5 Glutare 99.8 5.5E-20 1.2E-24 112.8 9.3 70 48-121 2-71 (72)
20 PRK11200 grxA glutaredoxin 1; 99.8 1.6E-19 3.5E-24 114.1 10.1 74 47-123 1-81 (85)
21 cd02066 GRX_family Glutaredoxi 99.8 2E-18 4.4E-23 104.1 10.0 71 48-121 1-71 (72)
22 PRK12759 bifunctional gluaredo 99.8 1.4E-18 3.1E-23 137.8 10.3 82 47-132 2-90 (410)
23 cd03030 GRX_SH3BGR Glutaredoxi 99.7 2.5E-17 5.3E-22 105.8 10.6 80 49-131 2-91 (92)
24 KOG0911 Glutaredoxin-related p 99.7 1.4E-17 3E-22 120.8 10.0 94 36-132 128-226 (227)
25 PF00462 Glutaredoxin: Glutare 99.7 1.3E-17 2.8E-22 98.8 7.9 60 49-111 1-60 (60)
26 PRK10329 glutaredoxin-like pro 99.7 6.3E-16 1.4E-20 97.1 9.6 64 48-115 2-65 (81)
27 TIGR02194 GlrX_NrdH Glutaredox 99.7 5.6E-16 1.2E-20 95.0 7.8 64 49-116 1-65 (72)
28 TIGR02196 GlrX_YruB Glutaredox 99.6 2.7E-14 5.8E-19 86.4 9.4 66 48-116 1-66 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 99.5 4.8E-13 1E-17 80.7 9.6 66 48-116 1-66 (73)
30 cd02973 TRX_GRX_like Thioredox 99.4 5.3E-13 1.1E-17 80.2 6.8 60 48-112 2-64 (67)
31 KOG2824 Glutaredoxin-related p 99.4 8.5E-13 1.8E-17 98.4 8.5 84 46-132 130-223 (281)
32 TIGR02200 GlrX_actino Glutared 99.4 3.2E-12 6.9E-17 78.3 9.6 63 48-113 1-65 (77)
33 PF04908 SH3BGR: SH3-binding, 99.2 1.5E-10 3.3E-15 75.1 9.9 81 48-131 2-97 (99)
34 TIGR00411 redox_disulf_1 small 99.2 2.6E-10 5.7E-15 70.6 8.9 61 48-113 2-67 (82)
35 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 1.7E-10 3.6E-15 73.6 7.8 73 35-112 2-77 (89)
36 cd03041 GST_N_2GST_N GST_N fam 99.1 2.8E-09 6.1E-14 65.8 9.3 71 49-122 2-74 (77)
37 cd00570 GST_N_family Glutathio 99.0 2.6E-09 5.7E-14 63.0 7.9 68 50-120 2-69 (71)
38 PHA02125 thioredoxin-like prot 99.0 2E-09 4.4E-14 66.2 7.3 55 49-111 2-56 (75)
39 PF05768 DUF836: Glutaredoxin- 99.0 1.2E-08 2.5E-13 63.9 9.5 55 48-108 1-57 (81)
40 cd02975 PfPDO_like_N Pyrococcu 98.9 9.1E-09 2E-13 68.2 8.9 62 40-106 16-81 (113)
41 cd03040 GST_N_mPGES2 GST_N fam 98.9 9.1E-09 2E-13 63.2 8.1 69 48-122 1-73 (77)
42 cd03037 GST_N_GRX2 GST_N famil 98.9 1.2E-08 2.7E-13 61.7 8.1 68 50-122 2-70 (71)
43 cd02954 DIM1 Dim1 family; Dim1 98.9 1.5E-08 3.2E-13 67.4 8.3 59 49-112 18-82 (114)
44 cd03060 GST_N_Omega_like GST_N 98.9 3E-08 6.4E-13 60.1 8.7 67 50-120 2-69 (71)
45 TIGR01295 PedC_BrcD bacterioci 98.8 3.6E-08 7.7E-13 66.3 8.9 65 49-114 27-106 (122)
46 cd03059 GST_N_SspA GST_N famil 98.8 4.9E-08 1.1E-12 59.1 8.5 70 49-122 1-70 (73)
47 cd03055 GST_N_Omega GST_N fami 98.8 5.6E-08 1.2E-12 61.6 9.0 72 46-121 16-88 (89)
48 cd03051 GST_N_GTT2_like GST_N 98.8 2.5E-08 5.4E-13 60.2 7.0 70 50-120 2-72 (74)
49 TIGR00412 redox_disulf_2 small 98.8 4E-08 8.7E-13 60.6 7.6 55 48-111 2-60 (76)
50 cd03045 GST_N_Delta_Epsilon GS 98.8 4.7E-08 1E-12 59.4 7.8 72 49-121 1-72 (74)
51 TIGR02187 GlrX_arch Glutaredox 98.8 2.7E-08 5.8E-13 72.8 7.5 73 32-109 120-195 (215)
52 PF13417 GST_N_3: Glutathione 98.7 1.1E-07 2.5E-12 58.2 8.1 68 51-122 1-68 (75)
53 PHA02278 thioredoxin-like prot 98.7 7.7E-08 1.7E-12 62.9 7.7 63 49-112 18-86 (103)
54 PRK15317 alkyl hydroperoxide r 98.7 2.2E-08 4.8E-13 81.8 4.9 80 30-112 101-181 (517)
55 TIGR03140 AhpF alkyl hydropero 98.7 2.2E-08 4.8E-13 81.8 4.9 80 30-112 102-182 (515)
56 cd02956 ybbN ybbN protein fami 98.7 1.2E-07 2.5E-12 60.4 7.1 59 48-111 15-79 (96)
57 cd02985 TRX_CDSP32 TRX family, 98.7 2.3E-07 4.9E-12 60.3 8.5 75 35-111 5-84 (103)
58 cd03056 GST_N_4 GST_N family, 98.7 2.7E-07 5.9E-12 55.6 8.0 70 50-120 2-71 (73)
59 cd03036 ArsC_like Arsenate Red 98.6 4.4E-08 9.6E-13 64.8 4.7 34 49-84 1-34 (111)
60 cd02953 DsbDgamma DsbD gamma f 98.6 1.4E-07 3E-12 61.0 6.9 57 49-106 15-78 (104)
61 cd02989 Phd_like_TxnDC9 Phosdu 98.6 4E-07 8.7E-12 60.3 7.8 59 49-112 26-89 (113)
62 KOG0910 Thioredoxin-like prote 98.6 1.1E-07 2.5E-12 65.6 5.1 72 35-111 49-128 (150)
63 cd02949 TRX_NTR TRX domain, no 98.6 6.6E-07 1.4E-11 57.3 8.5 59 49-112 17-81 (97)
64 cd02962 TMX2 TMX2 family; comp 98.6 1E-06 2.2E-11 61.5 9.9 59 49-112 51-122 (152)
65 PTZ00051 thioredoxin; Provisio 98.6 4E-07 8.6E-12 58.0 7.3 68 40-112 11-85 (98)
66 COG4545 Glutaredoxin-related p 98.6 3.9E-07 8.6E-12 55.7 6.5 67 48-117 3-81 (85)
67 cd03052 GST_N_GDAP1 GST_N fami 98.5 8.5E-07 1.8E-11 54.2 7.4 72 49-121 1-72 (73)
68 cd02965 HyaE HyaE family; HyaE 98.5 6.7E-07 1.5E-11 59.2 7.4 64 46-114 28-99 (111)
69 PF00085 Thioredoxin: Thioredo 98.5 2.7E-06 5.8E-11 54.1 9.9 72 34-111 7-84 (103)
70 TIGR03143 AhpF_homolog putativ 98.5 4.3E-07 9.3E-12 74.9 7.5 75 31-110 462-539 (555)
71 cd02977 ArsC_family Arsenate R 98.5 5.1E-07 1.1E-11 58.9 6.2 33 49-83 1-33 (105)
72 COG3118 Thioredoxin domain-con 98.5 4.3E-07 9.3E-12 69.0 6.4 78 33-115 30-114 (304)
73 cd02947 TRX_family TRX family; 98.5 2.2E-06 4.9E-11 52.7 8.6 60 48-112 13-77 (93)
74 cd02984 TRX_PICOT TRX domain, 98.5 1.4E-06 3E-11 55.3 7.7 58 49-111 18-81 (97)
75 PRK01655 spxA transcriptional 98.5 1.7E-06 3.7E-11 58.9 8.5 34 49-84 2-35 (131)
76 cd02948 TRX_NDPK TRX domain, T 98.5 1.3E-06 2.8E-11 56.5 7.6 57 49-111 21-84 (102)
77 cd02999 PDI_a_ERp44_like PDIa 98.4 7.7E-07 1.7E-11 57.6 6.1 54 49-106 22-78 (100)
78 PF13098 Thioredoxin_2: Thiore 98.4 1.2E-06 2.5E-11 57.1 7.1 71 47-117 7-105 (112)
79 cd02951 SoxW SoxW family; SoxW 98.4 7.9E-07 1.7E-11 59.4 6.4 69 38-106 4-90 (125)
80 PF13192 Thioredoxin_3: Thiore 98.4 1.3E-06 2.7E-11 53.9 6.8 54 48-110 2-59 (76)
81 KOG0907 Thioredoxin [Posttrans 98.4 9.7E-07 2.1E-11 58.0 6.2 58 49-111 25-87 (106)
82 cd02994 PDI_a_TMX PDIa family, 98.4 1.4E-06 2.9E-11 55.9 6.7 61 44-109 15-82 (101)
83 cd02957 Phd_like Phosducin (Ph 98.4 1.9E-06 4.1E-11 56.8 7.5 61 49-115 28-93 (113)
84 PRK09381 trxA thioredoxin; Pro 98.4 1.3E-06 2.8E-11 56.8 6.6 60 48-112 24-89 (109)
85 cd02963 TRX_DnaJ TRX domain, D 98.4 4E-06 8.7E-11 55.1 8.8 59 48-111 27-92 (111)
86 cd03053 GST_N_Phi GST_N family 98.4 4.5E-06 9.9E-11 50.8 8.4 73 49-122 2-74 (76)
87 cd02986 DLP Dim1 family, Dim1- 98.4 2.3E-06 5.1E-11 56.8 7.3 71 35-111 4-81 (114)
88 cd03003 PDI_a_ERdj5_N PDIa fam 98.4 1.9E-06 4.1E-11 55.4 6.5 58 49-111 22-85 (101)
89 cd02955 SSP411 TRX domain, SSP 98.4 5.5E-06 1.2E-10 55.9 8.9 73 39-111 7-94 (124)
90 PRK10996 thioredoxin 2; Provis 98.4 3E-06 6.6E-11 58.0 7.8 58 49-111 56-119 (139)
91 cd03032 ArsC_Spx Arsenate Redu 98.3 5.1E-06 1.1E-10 55.1 8.6 34 49-84 2-35 (115)
92 cd02950 TxlA TRX-like protein 98.3 1.6E-06 3.4E-11 59.7 6.2 60 49-111 24-90 (142)
93 TIGR01617 arsC_related transcr 98.3 1.7E-06 3.7E-11 57.6 6.0 34 49-84 1-34 (117)
94 cd03058 GST_N_Tau GST_N family 98.3 8.5E-06 1.8E-10 49.4 8.7 69 50-122 2-71 (74)
95 cd02996 PDI_a_ERp44 PDIa famil 98.3 3.3E-06 7.1E-11 55.0 7.0 56 49-109 22-89 (108)
96 TIGR01068 thioredoxin thioredo 98.3 9.1E-06 2E-10 51.4 8.6 59 48-111 17-81 (101)
97 cd02959 ERp19 Endoplasmic reti 98.3 2.7E-06 5.8E-11 56.7 6.3 74 35-112 7-91 (117)
98 cd03006 PDI_a_EFP1_N PDIa fami 98.3 2.4E-06 5.2E-11 56.7 5.9 57 49-109 33-95 (113)
99 PRK10877 protein disulfide iso 98.3 4.2E-06 9.1E-11 62.1 7.7 71 47-117 109-220 (232)
100 TIGR02187 GlrX_arch Glutaredox 98.3 4.3E-06 9.4E-11 61.1 7.5 66 43-111 17-90 (215)
101 cd03000 PDI_a_TMX3 PDIa family 98.3 2.1E-06 4.6E-11 55.5 5.2 64 38-106 7-78 (104)
102 cd03054 GST_N_Metaxin GST_N fa 98.2 1.2E-05 2.7E-10 48.5 7.8 57 55-122 14-70 (72)
103 cd03004 PDI_a_ERdj5_C PDIa fam 98.2 5.5E-06 1.2E-10 53.3 6.6 56 48-108 22-83 (104)
104 PRK12559 transcriptional regul 98.2 7.1E-06 1.5E-10 55.9 6.8 31 49-79 2-32 (131)
105 cd03049 GST_N_3 GST_N family, 98.2 1.5E-05 3.2E-10 48.2 7.6 67 50-120 2-71 (73)
106 cd03042 GST_N_Zeta GST_N famil 98.2 1.2E-05 2.7E-10 48.3 7.2 70 50-120 2-71 (73)
107 PRK13344 spxA transcriptional 98.2 6E-06 1.3E-10 56.3 6.4 31 49-81 2-32 (132)
108 cd03002 PDI_a_MPD1_like PDI fa 98.2 5.8E-06 1.3E-10 53.5 6.1 56 48-106 21-80 (109)
109 cd03035 ArsC_Yffb Arsenate Red 98.2 5.9E-06 1.3E-10 54.1 6.0 31 49-79 1-31 (105)
110 cd02987 Phd_like_Phd Phosducin 98.2 1.1E-05 2.3E-10 57.5 7.6 58 49-112 87-149 (175)
111 PTZ00443 Thioredoxin domain-co 98.2 2.4E-05 5.3E-10 57.8 9.7 59 48-111 55-119 (224)
112 cd03061 GST_N_CLIC GST_N famil 98.2 1.9E-05 4.2E-10 50.5 7.9 64 55-122 20-83 (91)
113 cd02961 PDI_a_family Protein D 98.1 2.5E-05 5.4E-10 48.9 8.2 55 47-106 17-77 (101)
114 cd02997 PDI_a_PDIR PDIa family 98.1 1.6E-05 3.5E-10 50.8 7.4 61 48-111 20-88 (104)
115 PF14595 Thioredoxin_9: Thiore 98.1 1.6E-06 3.5E-11 58.8 2.6 78 33-112 29-112 (129)
116 cd03001 PDI_a_P5 PDIa family, 98.1 1.3E-05 2.8E-10 51.2 6.7 54 48-106 21-78 (103)
117 cd01659 TRX_superfamily Thiore 98.1 1.3E-05 2.8E-10 45.1 5.9 58 49-108 1-61 (69)
118 cd03076 GST_N_Pi GST_N family, 98.1 5.2E-05 1.1E-09 46.0 8.7 70 49-122 2-71 (73)
119 cd03050 GST_N_Theta GST_N fami 98.1 3.7E-05 8E-10 46.8 8.1 73 49-122 1-73 (76)
120 TIGR01126 pdi_dom protein disu 98.1 1.2E-05 2.5E-10 51.1 5.8 55 47-106 15-75 (102)
121 KOG3029 Glutathione S-transfer 98.1 2.4E-05 5.2E-10 59.4 8.0 68 47-120 89-156 (370)
122 cd03048 GST_N_Ure2p_like GST_N 98.1 4.7E-05 1E-09 46.9 8.0 72 49-122 2-76 (81)
123 cd02993 PDI_a_APS_reductase PD 98.1 4.7E-05 1E-09 49.7 8.4 57 47-106 23-84 (109)
124 cd03005 PDI_a_ERp46 PDIa famil 98.1 2E-05 4.4E-10 50.2 6.5 59 48-111 19-86 (102)
125 cd03038 GST_N_etherase_LigE GS 98.1 1.9E-05 4.2E-10 49.1 6.3 66 55-122 14-80 (84)
126 PTZ00062 glutaredoxin; Provisi 98.0 1.5E-05 3.3E-10 58.1 6.3 54 48-114 20-78 (204)
127 PLN00410 U5 snRNP protein, DIM 98.0 2.9E-05 6.4E-10 53.5 7.3 72 33-109 11-89 (142)
128 PF13409 GST_N_2: Glutathione 98.0 1.4E-05 3E-10 48.3 5.1 67 56-122 1-68 (70)
129 cd02952 TRP14_like Human TRX-r 98.0 1.5E-05 3.2E-10 53.5 5.3 73 34-106 10-96 (119)
130 cd03020 DsbA_DsbC_DsbG DsbA fa 98.0 3.7E-05 8.1E-10 55.3 7.6 72 46-117 78-190 (197)
131 PTZ00102 disulphide isomerase; 98.0 9.3E-05 2E-09 59.6 10.5 58 48-110 52-118 (477)
132 cd03033 ArsC_15kD Arsenate Red 98.0 3.1E-05 6.6E-10 51.4 6.4 32 48-81 1-32 (113)
133 cd03080 GST_N_Metaxin_like GST 98.0 7.9E-05 1.7E-09 45.4 7.8 63 49-122 2-71 (75)
134 PF13899 Thioredoxin_7: Thiore 97.9 3.8E-05 8.2E-10 47.7 6.0 66 35-106 5-79 (82)
135 cd02998 PDI_a_ERp38 PDIa famil 97.9 6.3E-05 1.4E-09 47.9 6.7 55 48-106 21-81 (105)
136 PRK09481 sspA stringent starva 97.8 0.00017 3.6E-09 52.3 8.9 70 48-121 10-79 (211)
137 cd02988 Phd_like_VIAF Phosduci 97.8 4.4E-05 9.4E-10 55.2 5.7 56 49-112 106-166 (192)
138 TIGR02182 GRXB Glutaredoxin, G 97.8 9.6E-05 2.1E-09 53.7 7.5 69 50-123 1-70 (209)
139 cd03008 TryX_like_RdCVF Trypar 97.8 0.00044 9.5E-09 47.9 10.2 64 49-112 29-127 (146)
140 cd03039 GST_N_Sigma_like GST_N 97.8 0.00017 3.6E-09 43.4 7.3 69 50-121 2-70 (72)
141 cd02992 PDI_a_QSOX PDIa family 97.8 0.00011 2.5E-09 48.5 7.0 56 48-106 22-84 (114)
142 cd03047 GST_N_2 GST_N family, 97.8 0.00024 5.3E-09 42.8 7.8 70 50-120 2-71 (73)
143 PRK10387 glutaredoxin 2; Provi 97.8 0.00014 3.1E-09 52.3 7.9 70 49-123 1-71 (210)
144 cd03009 TryX_like_TryX_NRX Try 97.8 0.00022 4.8E-09 47.7 8.2 64 48-111 21-113 (131)
145 cd03044 GST_N_EF1Bgamma GST_N 97.8 0.00016 3.5E-09 43.9 6.9 70 50-121 2-72 (75)
146 TIGR02740 TraF-like TraF-like 97.8 0.00014 3.1E-09 55.2 7.7 69 38-106 159-235 (271)
147 cd03065 PDI_b_Calsequestrin_N 97.7 0.00017 3.7E-09 48.3 7.0 58 48-112 29-101 (120)
148 cd03034 ArsC_ArsC Arsenate Red 97.7 0.00026 5.7E-09 46.7 7.7 32 49-82 1-32 (112)
149 cd03057 GST_N_Beta GST_N famil 97.7 0.00036 7.7E-09 42.4 7.4 71 50-122 2-73 (77)
150 PRK00293 dipZ thiol:disulfide 97.7 0.00024 5.2E-09 59.1 8.5 76 33-110 460-547 (571)
151 PF13728 TraF: F plasmid trans 97.7 0.00022 4.8E-09 52.4 7.4 73 34-106 109-189 (215)
152 TIGR01616 nitro_assoc nitrogen 97.7 0.00069 1.5E-08 45.8 9.1 45 48-92 2-47 (126)
153 COG2143 Thioredoxin-related pr 97.7 0.00068 1.5E-08 47.4 9.2 77 36-112 31-130 (182)
154 PRK15113 glutathione S-transfe 97.7 0.00047 1E-08 50.0 8.8 73 48-121 5-79 (214)
155 COG1393 ArsC Arsenate reductas 97.7 0.00026 5.6E-09 47.3 6.7 32 48-79 2-33 (117)
156 PRK15412 thiol:disulfide inter 97.6 0.00037 8.1E-09 49.7 8.0 59 49-107 72-150 (185)
157 TIGR00014 arsC arsenate reduct 97.6 0.00021 4.5E-09 47.4 6.1 31 49-81 1-31 (114)
158 KOG0908 Thioredoxin-like prote 97.6 0.00019 4.1E-09 53.7 6.3 59 48-111 24-87 (288)
159 cd02995 PDI_a_PDI_a'_C PDIa fa 97.6 0.00026 5.7E-09 45.0 6.0 53 48-106 21-79 (104)
160 cd02964 TryX_like_family Trypa 97.6 0.00069 1.5E-08 45.5 8.3 64 49-112 21-114 (132)
161 PRK10026 arsenate reductase; P 97.6 0.00036 7.7E-09 48.1 6.8 47 47-93 2-49 (141)
162 KOG4023 Uncharacterized conser 97.6 0.00043 9.4E-09 44.6 6.5 82 48-131 3-97 (108)
163 TIGR02738 TrbB type-F conjugat 97.6 0.00018 3.9E-09 50.2 5.2 28 44-71 49-76 (153)
164 cd03010 TlpA_like_DsbE TlpA-li 97.5 0.0005 1.1E-08 45.7 7.0 64 48-111 28-114 (127)
165 PF13905 Thioredoxin_8: Thiore 97.5 0.0015 3.2E-08 41.1 8.8 45 49-93 5-55 (95)
166 PLN02309 5'-adenylylsulfate re 97.5 0.0004 8.7E-09 56.3 7.0 56 48-106 368-428 (457)
167 PRK13728 conjugal transfer pro 97.5 0.00032 7E-09 50.3 5.7 63 47-109 71-148 (181)
168 PRK10853 putative reductase; P 97.5 0.00044 9.4E-09 46.2 6.0 31 49-79 2-32 (118)
169 cd03046 GST_N_GTT1_like GST_N 97.5 0.00099 2.2E-08 40.1 7.2 71 50-122 2-72 (76)
170 TIGR00862 O-ClC intracellular 97.4 0.001 2.3E-08 49.5 8.2 65 55-123 17-81 (236)
171 PLN02473 glutathione S-transfe 97.4 0.00098 2.1E-08 48.1 7.9 73 49-122 3-75 (214)
172 TIGR00424 APS_reduc 5'-adenyly 97.4 0.0005 1.1E-08 55.9 6.6 58 49-109 375-439 (463)
173 PRK03147 thiol-disulfide oxido 97.4 0.0024 5.1E-08 44.5 9.1 65 47-111 63-152 (173)
174 TIGR01130 ER_PDI_fam protein d 97.4 0.00099 2.2E-08 53.1 8.0 57 49-110 22-87 (462)
175 cd03007 PDI_a_ERp29_N PDIa fam 97.4 0.0018 3.9E-08 43.2 7.8 61 49-109 22-91 (116)
176 PLN02378 glutathione S-transfe 97.4 0.0013 2.9E-08 47.7 7.8 64 55-122 18-81 (213)
177 cd03043 GST_N_1 GST_N family, 97.3 0.0023 5E-08 38.7 7.5 65 54-120 7-71 (73)
178 TIGR00385 dsbE periplasmic pro 97.3 0.0016 3.4E-08 45.9 7.6 63 49-111 67-151 (173)
179 cd02982 PDI_b'_family Protein 97.3 0.00052 1.1E-08 43.7 4.5 55 47-106 14-74 (103)
180 cd03023 DsbA_Com1_like DsbA fa 97.3 0.0021 4.5E-08 43.4 7.6 25 46-70 6-30 (154)
181 PRK11657 dsbG disulfide isomer 97.3 0.0016 3.6E-08 48.8 7.5 22 48-69 120-141 (251)
182 cd02958 UAS UAS family; UAS is 97.2 0.0023 4.9E-08 42.0 7.3 74 35-111 5-91 (114)
183 KOG4277 Uncharacterized conser 97.2 0.0005 1.1E-08 53.0 4.4 78 32-111 29-112 (468)
184 COG3634 AhpF Alkyl hydroperoxi 97.2 0.0031 6.6E-08 49.9 8.5 99 19-123 93-196 (520)
185 PLN02817 glutathione dehydroge 97.2 0.0029 6.2E-08 47.9 8.0 81 34-122 54-134 (265)
186 cd03011 TlpA_like_ScsD_MtbDsbE 97.2 0.0022 4.9E-08 42.1 6.7 61 46-106 21-99 (123)
187 TIGR02739 TraF type-F conjugat 97.2 0.0038 8.2E-08 47.1 8.5 73 34-106 139-219 (256)
188 cd02966 TlpA_like_family TlpA- 97.2 0.0031 6.7E-08 39.9 7.1 46 46-91 20-71 (116)
189 TIGR01262 maiA maleylacetoacet 97.1 0.0013 2.8E-08 47.2 5.8 72 51-122 2-73 (210)
190 KOG0190 Protein disulfide isom 97.1 0.0015 3.3E-08 53.3 6.6 68 38-110 33-111 (493)
191 smart00594 UAS UAS domain. 97.1 0.0046 9.9E-08 41.2 7.7 71 33-106 13-92 (122)
192 PTZ00102 disulphide isomerase; 97.1 0.00067 1.4E-08 54.6 4.3 53 49-106 379-437 (477)
193 cd02967 mauD Methylamine utili 97.1 0.0012 2.7E-08 42.7 4.8 23 48-70 24-46 (114)
194 cd02972 DsbA_family DsbA famil 97.1 0.0027 5.9E-08 39.2 6.2 22 49-70 1-22 (98)
195 PRK13703 conjugal pilus assemb 97.0 0.00073 1.6E-08 50.7 3.7 70 35-106 133-212 (248)
196 PF06110 DUF953: Eukaryotic pr 97.0 0.0039 8.5E-08 41.8 6.7 72 34-106 6-95 (119)
197 PF13462 Thioredoxin_4: Thiore 97.0 0.012 2.6E-07 40.2 9.5 23 46-68 13-35 (162)
198 KOG0406 Glutathione S-transfer 97.0 0.0077 1.7E-07 44.7 8.6 72 47-122 8-80 (231)
199 cd03012 TlpA_like_DipZ_like Tl 97.0 0.0046 1E-07 41.1 6.7 24 47-70 25-48 (126)
200 cd03077 GST_N_Alpha GST_N fami 96.9 0.0086 1.9E-07 36.8 7.1 69 49-121 2-72 (79)
201 KOG2501 Thioredoxin, nucleored 96.9 0.0096 2.1E-07 41.7 7.7 61 51-111 39-129 (157)
202 KOG1422 Intracellular Cl- chan 96.8 0.0089 1.9E-07 43.7 7.6 64 55-122 19-82 (221)
203 PF03960 ArsC: ArsC family; I 96.8 0.0037 8.1E-08 40.9 5.1 30 52-83 1-30 (110)
204 COG3019 Predicted metal-bindin 96.8 0.01 2.2E-07 40.8 7.1 73 46-125 25-104 (149)
205 COG0625 Gst Glutathione S-tran 96.8 0.0067 1.5E-07 43.7 6.8 72 50-123 2-74 (211)
206 cd02960 AGR Anterior Gradient 96.8 0.0021 4.6E-08 43.7 3.9 33 35-67 11-45 (130)
207 TIGR02661 MauD methylamine deh 96.7 0.0076 1.6E-07 43.2 6.9 22 49-70 78-99 (189)
208 PF08534 Redoxin: Redoxin; In 96.7 0.025 5.5E-07 38.2 8.9 45 49-94 32-82 (146)
209 PLN02395 glutathione S-transfe 96.7 0.014 3.1E-07 41.9 7.9 72 49-122 3-74 (215)
210 PRK13972 GSH-dependent disulfi 96.6 0.018 3.9E-07 41.6 8.0 72 49-122 2-80 (215)
211 KOG3425 Uncharacterized conser 96.5 0.0052 1.1E-07 41.1 4.4 72 34-106 13-101 (128)
212 PRK10357 putative glutathione 96.5 0.016 3.5E-07 41.3 7.2 68 50-121 2-70 (202)
213 PF06764 DUF1223: Protein of u 96.4 0.0076 1.6E-07 44.0 5.0 67 49-115 2-86 (202)
214 PRK11752 putative S-transferas 96.4 0.025 5.5E-07 42.6 8.0 78 43-122 39-126 (264)
215 PRK14018 trifunctional thiored 96.2 0.022 4.8E-07 47.1 7.1 22 49-70 60-81 (521)
216 COG5494 Predicted thioredoxin/ 96.2 0.045 9.9E-07 40.2 7.9 71 46-121 10-84 (265)
217 PF02798 GST_N: Glutathione S- 96.2 0.047 1E-06 33.1 7.0 70 49-121 3-74 (76)
218 KOG0868 Glutathione S-transfer 96.1 0.019 4E-07 41.3 5.6 70 52-123 11-80 (217)
219 cd03078 GST_N_Metaxin1_like GS 96.1 0.051 1.1E-06 33.0 6.9 58 55-123 14-71 (73)
220 PHA03075 glutaredoxin-like pro 96.1 0.011 2.5E-07 39.2 4.1 35 47-81 3-37 (123)
221 COG5429 Uncharacterized secret 96.0 0.013 2.8E-07 43.6 4.6 103 3-109 1-122 (261)
222 COG2999 GrxB Glutaredoxin 2 [P 96.0 0.016 3.5E-07 41.5 4.9 66 51-121 3-69 (215)
223 PF07315 DUF1462: Protein of u 95.9 0.052 1.1E-06 34.4 6.4 72 50-121 1-89 (93)
224 PLN02919 haloacid dehalogenase 95.9 0.03 6.5E-07 50.0 7.1 23 49-71 424-446 (1057)
225 TIGR01626 ytfJ_HI0045 conserve 95.9 0.066 1.4E-06 38.5 7.6 27 45-71 59-85 (184)
226 KOG0190 Protein disulfide isom 95.8 0.0064 1.4E-07 49.7 2.3 51 49-106 388-444 (493)
227 TIGR01130 ER_PDI_fam protein d 95.7 0.021 4.5E-07 45.5 5.0 51 49-106 368-425 (462)
228 KOG0191 Thioredoxin/protein di 95.6 0.02 4.2E-07 45.4 4.5 56 46-106 48-107 (383)
229 PF03190 Thioredox_DsbH: Prote 95.6 0.092 2E-06 37.1 7.2 60 49-112 41-117 (163)
230 cd02969 PRX_like1 Peroxiredoxi 95.4 0.098 2.1E-06 36.5 7.1 24 47-70 27-50 (171)
231 COG4232 Thiol:disulfide interc 95.4 0.042 9.1E-07 45.7 5.7 58 48-106 476-540 (569)
232 COG0526 TrxA Thiol-disulfide i 95.4 0.032 7E-07 34.6 4.1 55 52-109 39-100 (127)
233 KOG0867 Glutathione S-transfer 95.4 0.093 2E-06 38.7 7.1 74 48-122 2-75 (226)
234 PF11009 DUF2847: Protein of u 95.1 0.38 8.3E-06 31.5 8.6 68 42-112 15-92 (105)
235 cd03075 GST_N_Mu GST_N family, 94.9 0.36 7.7E-06 29.7 7.8 71 51-121 3-78 (82)
236 cd00340 GSH_Peroxidase Glutath 94.9 0.093 2E-06 36.0 5.6 21 49-70 26-46 (152)
237 PF04134 DUF393: Protein of un 94.5 0.18 3.9E-06 32.8 5.9 70 51-123 1-76 (114)
238 COG1651 DsbG Protein-disulfide 94.4 0.025 5.5E-07 41.7 1.9 26 93-118 208-233 (244)
239 PRK10542 glutathionine S-trans 94.2 0.23 5E-06 35.2 6.6 71 50-121 2-73 (201)
240 KOG1672 ATP binding protein [P 94.2 0.19 4.1E-06 36.5 5.9 77 36-117 74-159 (211)
241 PTZ00056 glutathione peroxidas 94.0 0.3 6.4E-06 35.3 6.8 22 49-70 43-64 (199)
242 KOG0912 Thiol-disulfide isomer 94.0 0.086 1.9E-06 40.9 4.0 67 42-111 8-85 (375)
243 cd03079 GST_N_Metaxin2 GST_N f 93.9 0.2 4.3E-06 30.7 4.9 58 55-122 15-72 (74)
244 PTZ00256 glutathione peroxidas 93.9 0.25 5.3E-06 35.1 6.1 21 50-70 46-66 (183)
245 KOG1731 FAD-dependent sulfhydr 93.8 0.01 2.2E-07 49.1 -1.4 68 46-113 58-138 (606)
246 PLN02399 phospholipid hydroper 93.6 0.2 4.4E-06 37.4 5.4 24 47-70 101-124 (236)
247 COG4837 Uncharacterized protei 93.5 1.2 2.7E-05 28.5 8.1 76 45-120 3-95 (106)
248 TIGR03143 AhpF_homolog putativ 93.5 0.39 8.6E-06 39.9 7.5 54 48-106 369-425 (555)
249 PTZ00057 glutathione s-transfe 93.5 0.77 1.7E-05 32.9 8.2 72 48-121 4-79 (205)
250 PLN02412 probable glutathione 93.2 0.25 5.4E-06 34.6 5.1 22 49-70 33-54 (167)
251 cd02968 SCO SCO (an acronym fo 93.2 0.47 1E-05 31.5 6.4 23 47-69 24-47 (142)
252 cd03014 PRX_Atyp2cys Peroxired 93.1 0.22 4.8E-06 33.4 4.6 24 47-70 28-52 (143)
253 cd03019 DsbA_DsbA DsbA family, 93.1 0.094 2E-06 36.4 2.8 25 46-70 16-40 (178)
254 PRK11509 hydrogenase-1 operon 93.1 0.52 1.1E-05 32.1 6.3 60 49-113 37-106 (132)
255 PF00578 AhpC-TSA: AhpC/TSA fa 92.7 0.26 5.7E-06 31.9 4.4 24 47-70 27-51 (124)
256 cd02970 PRX_like2 Peroxiredoxi 92.4 0.39 8.4E-06 32.1 5.1 23 48-70 26-49 (149)
257 PF06953 ArsD: Arsenical resis 92.3 1 2.2E-05 30.4 6.8 55 62-119 31-93 (123)
258 TIGR02540 gpx7 putative glutat 92.2 0.15 3.3E-06 34.9 2.9 22 49-70 26-47 (153)
259 KOG0191 Thioredoxin/protein di 91.6 0.54 1.2E-05 37.2 5.7 57 45-106 162-224 (383)
260 KOG4244 Failed axon connection 91.5 0.77 1.7E-05 34.9 6.0 70 40-120 37-113 (281)
261 PF10568 Tom37: Outer mitochon 91.0 1.8 3.8E-05 26.2 6.3 57 57-121 14-71 (72)
262 cd02991 UAS_ETEA UAS family, E 90.8 1.7 3.7E-05 28.7 6.7 65 35-105 5-81 (116)
263 cd02971 PRX_family Peroxiredox 90.6 0.45 9.8E-06 31.5 3.9 22 48-69 25-47 (140)
264 cd03018 PRX_AhpE_like Peroxire 90.6 0.55 1.2E-05 31.5 4.3 22 49-70 32-54 (149)
265 KOG0914 Thioredoxin-like prote 90.5 0.26 5.6E-06 36.6 2.7 93 19-111 114-218 (265)
266 KOG3414 Component of the U4/U6 90.1 1.6 3.4E-05 29.7 5.9 58 49-111 27-90 (142)
267 PRK00522 tpx lipid hydroperoxi 89.7 0.84 1.8E-05 31.9 4.7 23 48-70 47-70 (167)
268 cd03017 PRX_BCP Peroxiredoxin 88.5 1.2 2.6E-05 29.5 4.7 20 49-68 27-47 (140)
269 PF02114 Phosducin: Phosducin; 88.4 0.35 7.7E-06 36.7 2.2 60 49-114 150-214 (265)
270 PF11287 DUF3088: Protein of u 88.2 2.7 5.8E-05 27.8 6.0 49 56-108 23-76 (112)
271 cd03022 DsbA_HCCA_Iso DsbA fam 87.5 1.3 2.8E-05 31.0 4.5 26 95-120 162-187 (192)
272 TIGR03137 AhpC peroxiredoxin. 87.1 1.7 3.6E-05 30.9 5.0 20 49-68 35-55 (187)
273 PRK10606 btuE putative glutath 86.8 4.6 0.0001 28.9 7.1 22 47-69 27-48 (183)
274 cd03015 PRX_Typ2cys Peroxiredo 86.3 1.2 2.6E-05 31.1 3.8 22 49-70 33-55 (173)
275 cd05295 MDH_like Malate dehydr 86.2 2.5 5.4E-05 34.6 6.0 69 54-122 1-82 (452)
276 PF10865 DUF2703: Domain of un 86.1 2.4 5.2E-05 28.4 5.0 48 56-111 14-72 (120)
277 PRK10954 periplasmic protein d 85.3 1.3 2.9E-05 31.9 3.7 21 46-66 38-58 (207)
278 KOG1695 Glutathione S-transfer 84.7 6.4 0.00014 28.8 7.0 70 48-121 3-72 (206)
279 PF01323 DSBA: DSBA-like thior 84.6 1.2 2.5E-05 31.2 3.1 23 48-70 1-23 (193)
280 PRK09437 bcp thioredoxin-depen 84.2 7 0.00015 26.4 6.8 19 49-67 34-53 (154)
281 PF01323 DSBA: DSBA-like thior 83.6 2.3 4.9E-05 29.7 4.2 27 93-119 160-187 (193)
282 KOG0913 Thiol-disulfide isomer 83.0 0.36 7.9E-06 36.0 -0.1 64 41-109 35-105 (248)
283 PRK13190 putative peroxiredoxi 82.7 2.5 5.5E-05 30.5 4.3 18 52-69 35-52 (202)
284 PRK10954 periplasmic protein d 82.2 0.91 2E-05 32.8 1.8 20 94-113 161-180 (207)
285 TIGR03759 conj_TIGR03759 integ 82.1 6.7 0.00015 28.6 6.1 46 45-90 108-153 (200)
286 KOG3171 Conserved phosducin-li 81.8 4.9 0.00011 29.9 5.4 90 36-131 149-248 (273)
287 cd03016 PRX_1cys Peroxiredoxin 80.1 4.1 9E-05 29.3 4.6 19 51-69 32-50 (203)
288 PRK13599 putative peroxiredoxi 80.1 3.5 7.6E-05 30.2 4.2 19 51-69 35-53 (215)
289 COG3011 Predicted thiol-disulf 78.5 19 0.00041 24.7 8.3 73 45-120 6-82 (137)
290 PRK13189 peroxiredoxin; Provis 77.7 4.9 0.00011 29.5 4.4 18 51-68 42-59 (222)
291 KOG4420 Uncharacterized conser 77.3 1.6 3.5E-05 33.3 1.8 75 48-123 26-100 (325)
292 cd03013 PRX5_like Peroxiredoxi 76.8 12 0.00025 25.8 5.9 18 46-63 29-48 (155)
293 cd03019 DsbA_DsbA DsbA family, 74.7 4.7 0.0001 27.7 3.5 20 94-113 137-156 (178)
294 PRK13191 putative peroxiredoxi 74.7 6.3 0.00014 28.8 4.3 20 51-70 40-59 (215)
295 cd02974 AhpF_NTD_N Alkyl hydro 74.6 6.6 0.00014 25.0 3.9 34 37-71 11-44 (94)
296 cd03024 DsbA_FrnE DsbA family, 74.0 9.8 0.00021 26.7 5.1 24 94-117 169-193 (201)
297 COG1331 Highly conserved prote 73.9 18 0.00038 31.2 7.1 57 52-111 50-122 (667)
298 PRK15000 peroxidase; Provision 73.4 13 0.00028 26.8 5.6 24 46-69 34-59 (200)
299 PF03227 GILT: Gamma interfero 73.3 3.7 7.9E-05 26.7 2.5 16 48-63 2-17 (108)
300 COG0041 PurE Phosphoribosylcar 72.4 31 0.00066 24.3 6.9 70 50-119 8-101 (162)
301 PTZ00137 2-Cys peroxiredoxin; 71.3 13 0.00027 28.3 5.3 23 45-67 97-121 (261)
302 cd03025 DsbA_FrnE_like DsbA fa 70.7 3.2 6.9E-05 29.0 1.9 23 48-70 2-24 (193)
303 cd06388 PBP1_iGluR_AMPA_GluR4 70.1 35 0.00076 26.8 7.8 93 29-122 45-148 (371)
304 TIGR01162 purE phosphoribosyla 69.7 21 0.00046 25.0 5.7 72 51-122 5-100 (156)
305 TIGR03439 methyl_EasF probable 69.6 39 0.00084 26.4 7.8 61 53-117 81-144 (319)
306 COG1651 DsbG Protein-disulfide 69.5 5.2 0.00011 29.3 2.9 25 46-70 85-109 (244)
307 PRK10382 alkyl hydroperoxide r 68.3 10 0.00022 27.1 4.1 21 49-69 35-56 (187)
308 PTZ00253 tryparedoxin peroxida 67.8 25 0.00055 25.1 6.1 19 49-67 40-59 (199)
309 PF15643 Tox-PL-2: Papain fold 66.4 17 0.00037 23.6 4.4 69 35-112 4-73 (100)
310 cd06387 PBP1_iGluR_AMPA_GluR3 66.1 31 0.00067 27.3 6.8 92 29-121 45-147 (372)
311 cd06381 PBP1_iGluR_delta_like 65.3 65 0.0014 25.3 8.7 92 29-121 44-161 (363)
312 PF09822 ABC_transp_aux: ABC-t 64.8 51 0.0011 24.6 7.5 70 32-102 12-90 (271)
313 PF13721 SecD-TM1: SecD export 63.4 37 0.00081 21.8 8.6 54 4-75 5-63 (101)
314 KOG2603 Oligosaccharyltransfer 62.1 27 0.00059 27.4 5.5 54 49-107 64-133 (331)
315 PF00731 AIRC: AIR carboxylase 61.3 26 0.00056 24.4 4.9 48 48-95 2-51 (150)
316 COG4566 TtrR Response regulato 60.3 65 0.0014 23.6 7.8 83 30-124 10-98 (202)
317 COG1225 Bcp Peroxiredoxin [Pos 59.7 58 0.0013 22.8 6.5 15 47-61 31-47 (157)
318 PF02966 DIM1: Mitosis protein 59.5 54 0.0012 22.4 6.1 70 36-111 11-87 (133)
319 PF07449 HyaE: Hydrogenase-1 e 59.5 22 0.00049 23.2 4.1 77 34-115 17-99 (107)
320 PF06053 DUF929: Domain of unk 59.2 7.4 0.00016 29.4 2.0 28 44-71 55-88 (249)
321 cd03022 DsbA_HCCA_Iso DsbA fam 58.6 11 0.00023 26.2 2.7 22 49-70 1-22 (192)
322 COG2761 FrnE Predicted dithiol 58.2 7.5 0.00016 28.9 1.9 25 46-70 5-29 (225)
323 KOG0932 Guanine nucleotide exc 57.2 5.7 0.00012 33.6 1.2 40 2-41 528-567 (774)
324 PF12689 Acid_PPase: Acid Phos 56.9 65 0.0014 22.7 6.4 75 34-109 48-133 (169)
325 PRK15317 alkyl hydroperoxide r 56.5 17 0.00037 29.9 3.9 33 38-71 12-44 (517)
326 PF13344 Hydrolase_6: Haloacid 56.5 49 0.0011 21.0 5.7 62 34-97 17-79 (101)
327 PF00282 Pyridoxal_deC: Pyrido 56.0 40 0.00086 26.7 5.8 74 46-121 139-217 (373)
328 cd06389 PBP1_iGluR_AMPA_GluR2 54.8 64 0.0014 25.3 6.7 92 29-121 39-141 (370)
329 cd06390 PBP1_iGluR_AMPA_GluR1 54.3 98 0.0021 24.3 7.7 92 29-121 38-140 (364)
330 COG3340 PepE Peptidase E [Amin 53.1 86 0.0019 23.3 6.6 68 33-108 17-92 (224)
331 cd03024 DsbA_FrnE DsbA family, 52.1 13 0.00028 26.1 2.2 21 49-69 1-21 (201)
332 PF04566 RNA_pol_Rpb2_4: RNA p 50.9 15 0.00032 21.7 2.0 13 104-116 1-13 (63)
333 TIGR03140 AhpF alkyl hydropero 50.0 25 0.00055 28.9 3.9 23 48-71 22-44 (515)
334 COG1139 Uncharacterized conser 49.4 1.1E+02 0.0023 25.3 7.2 50 29-80 83-134 (459)
335 PLN02590 probable tyrosine dec 48.5 86 0.0019 26.4 6.8 75 47-121 228-310 (539)
336 TIGR03865 PQQ_CXXCW PQQ-depend 48.5 34 0.00073 23.8 3.9 29 45-73 115-143 (162)
337 COG5309 Exo-beta-1,3-glucanase 48.5 72 0.0016 24.7 5.8 79 34-113 63-146 (305)
338 PF14424 Toxin-deaminase: The 46.7 47 0.001 22.5 4.2 24 47-70 97-121 (133)
339 cd03082 TRX_Fd_NuoE_W_FDH_beta 46.7 32 0.0007 20.5 3.1 24 100-123 46-71 (72)
340 PF08599 Nbs1_C: DNA damage re 45.6 16 0.00034 21.7 1.5 30 96-131 13-43 (65)
341 PF02630 SCO1-SenC: SCO1/SenC; 45.6 1E+02 0.0022 21.5 6.1 43 49-91 56-109 (174)
342 PF15048 OSTbeta: Organic solu 45.1 16 0.00036 24.6 1.7 14 5-18 34-47 (125)
343 COG3917 NahD 2-hydroxychromene 45.1 52 0.0011 23.9 4.3 24 97-120 173-196 (203)
344 PF03575 Peptidase_S51: Peptid 43.5 1E+02 0.0022 20.9 6.6 60 60-130 2-62 (154)
345 cd03021 DsbA_GSTK DsbA family, 43.5 34 0.00074 24.5 3.4 22 48-69 2-23 (209)
346 KOG3160 Gamma-interferon induc 42.6 23 0.00049 26.3 2.3 18 47-64 41-58 (220)
347 PLN02880 tyrosine decarboxylas 42.3 99 0.0022 25.5 6.2 73 47-120 180-261 (490)
348 cd04816 PA_SaNapH_like PA_SaNa 41.7 57 0.0012 21.3 4.0 73 46-124 43-115 (122)
349 KOG3028 Translocase of outer m 41.6 1.2E+02 0.0026 23.8 6.1 65 48-123 3-73 (313)
350 PF05673 DUF815: Protein of un 41.2 1.6E+02 0.0034 22.4 7.3 64 45-111 51-117 (249)
351 KOG4700 Uncharacterized homolo 40.5 34 0.00074 24.7 2.8 35 87-121 100-135 (207)
352 cd02127 PA_hPAP21_like PA_hPAP 40.5 62 0.0013 21.3 4.0 74 46-126 34-111 (118)
353 COG1999 Uncharacterized protei 40.5 1.1E+02 0.0024 22.2 5.6 54 41-97 62-127 (207)
354 PF13743 Thioredoxin_5: Thiore 40.3 31 0.00066 24.3 2.7 20 51-70 2-21 (176)
355 PF13848 Thioredoxin_6: Thiore 39.4 1.2E+02 0.0026 20.5 6.4 53 49-106 99-157 (184)
356 PF07511 DUF1525: Protein of u 39.4 44 0.00094 22.2 3.1 25 96-120 79-104 (114)
357 PF15616 TerY-C: TerY-C metal 39.1 8.5 0.00018 26.2 -0.3 16 51-66 74-89 (131)
358 PF14237 DUF4339: Domain of un 39.1 33 0.00071 18.3 2.1 23 105-127 5-29 (45)
359 PF15379 DUF4606: Domain of un 38.8 27 0.00059 22.7 2.0 19 51-69 28-46 (104)
360 KOG1734 Predicted RING-contain 37.9 19 0.00041 27.7 1.3 14 53-66 269-282 (328)
361 KOG0629 Glutamate decarboxylas 37.8 2.4E+02 0.0052 23.5 8.3 75 46-121 195-276 (510)
362 PF10087 DUF2325: Uncharacteri 37.3 1E+02 0.0022 19.1 6.9 36 37-72 39-76 (97)
363 PLN00020 ribulose bisphosphate 37.2 1.9E+02 0.004 23.7 6.8 30 49-80 151-180 (413)
364 cd06392 PBP1_iGluR_delta_1 N-t 37.1 2.2E+02 0.0048 22.9 7.6 86 33-120 48-160 (400)
365 PF00004 AAA: ATPase family as 35.8 1.1E+02 0.0025 19.2 5.0 31 49-81 1-31 (132)
366 COG1826 TatA Sec-independent p 35.2 31 0.00067 21.8 1.8 41 1-42 1-41 (94)
367 PRK08118 topology modulation p 35.2 1.5E+02 0.0033 20.4 7.1 27 47-73 2-28 (167)
368 COG1606 ATP-utilizing enzymes 35.1 2.1E+02 0.0045 22.0 7.4 77 31-109 27-121 (269)
369 TIGR03757 conj_TIGR03757 integ 34.8 52 0.0011 21.8 2.8 25 96-120 80-105 (113)
370 KOG3040 Predicted sugar phosph 33.0 1.8E+02 0.0039 21.8 5.7 76 34-114 26-102 (262)
371 PF14437 MafB19-deam: MafB19-l 32.9 1.7E+02 0.0037 20.3 5.7 28 46-73 99-128 (146)
372 COG1832 Predicted CoA-binding 32.0 1.4E+02 0.003 20.6 4.7 45 38-84 7-54 (140)
373 PF11238 DUF3039: Protein of u 31.5 25 0.00053 20.5 0.8 13 55-67 45-57 (58)
374 cd01444 GlpE_ST GlpE sulfurtra 30.8 1.2E+02 0.0027 18.1 4.8 38 35-73 45-82 (96)
375 PF03470 zf-XS: XS zinc finger 30.5 14 0.00031 20.2 -0.3 6 57-62 1-6 (43)
376 TIGR02652 conserved hypothetic 30.3 17 0.00037 25.1 0.0 18 51-68 5-23 (163)
377 PRK15320 transcriptional activ 30.2 2.2E+02 0.0048 21.2 5.7 50 57-109 30-82 (251)
378 PF09654 DUF2396: Protein of u 29.5 17 0.00037 25.1 -0.1 13 56-68 8-20 (161)
379 TIGR00439 ftsX putative protei 29.4 1.9E+02 0.0042 22.3 5.7 34 38-71 57-92 (309)
380 PF13353 Fer4_12: 4Fe-4S singl 29.3 76 0.0017 20.6 3.1 15 47-61 6-23 (139)
381 PLN02948 phosphoribosylaminoim 28.9 2.2E+02 0.0049 24.1 6.4 46 48-93 412-459 (577)
382 PRK00442 tatA twin arginine tr 28.8 52 0.0011 21.0 2.0 27 1-28 1-27 (92)
383 PF11399 DUF3192: Protein of u 28.4 46 0.00099 21.7 1.7 14 99-112 80-93 (102)
384 PF07728 AAA_5: AAA domain (dy 28.2 1.7E+02 0.0037 18.9 4.8 34 48-83 1-34 (139)
385 PF07908 D-aminoacyl_C: D-amin 28.0 53 0.0012 18.0 1.8 15 98-112 17-31 (48)
386 PRK10629 EnvZ/OmpR regulon mod 27.9 1.9E+02 0.0042 19.4 8.2 18 58-75 50-67 (127)
387 PF05728 UPF0227: Uncharacteri 27.6 1.4E+02 0.003 21.3 4.4 13 104-116 61-73 (187)
388 PRK05282 (alpha)-aspartyl dipe 27.3 2.6E+02 0.0057 20.7 7.8 47 34-82 18-70 (233)
389 PF15061 DUF4538: Domain of un 26.9 33 0.00071 20.0 0.8 16 3-18 2-17 (58)
390 COG2761 FrnE Predicted dithiol 26.9 1.5E+02 0.0033 22.0 4.5 21 94-114 178-199 (225)
391 TIGR00853 pts-lac PTS system, 26.9 1.5E+02 0.0033 18.5 4.0 28 88-115 63-90 (95)
392 PF00403 HMA: Heavy-metal-asso 26.3 1.1E+02 0.0024 16.9 3.1 17 55-71 7-24 (62)
393 PF00532 Peripla_BP_1: Peripla 26.2 2.8E+02 0.006 20.7 6.7 58 46-109 31-88 (279)
394 PRK00766 hypothetical protein; 25.5 1.8E+02 0.004 21.1 4.6 24 99-122 70-95 (194)
395 PTZ00494 tuzin-like protein; P 25.1 1.5E+02 0.0033 25.1 4.5 58 46-109 394-452 (664)
396 PF13364 BetaGal_dom4_5: Beta- 24.8 62 0.0013 20.9 1.9 18 98-115 61-78 (111)
397 cd00755 YgdL_like Family of ac 24.7 77 0.0017 23.5 2.6 19 55-73 154-172 (231)
398 cd02978 KaiB_like KaiB-like fa 24.6 1.7E+02 0.0037 17.7 4.6 52 48-104 3-59 (72)
399 cd05565 PTS_IIB_lactose PTS_II 24.6 1.3E+02 0.0028 19.3 3.3 26 87-112 59-84 (99)
400 COG2608 CopZ Copper chaperone 24.6 1.2E+02 0.0026 17.9 3.0 17 55-71 11-28 (71)
401 TIGR03521 GldG gliding-associa 24.5 4.3E+02 0.0092 22.2 9.3 54 33-86 36-97 (552)
402 PRK11026 ftsX cell division AB 23.8 2.3E+02 0.0049 21.9 5.2 34 38-71 57-92 (309)
403 cd03145 GAT1_cyanophycinase Ty 23.2 3E+02 0.0064 19.9 9.7 56 46-108 29-91 (217)
404 TIGR03596 GTPase_YlqF ribosome 22.9 3.3E+02 0.0072 20.4 6.6 22 34-55 9-30 (276)
405 PF14364 DUF4408: Domain of un 22.8 41 0.00089 17.3 0.6 17 4-20 9-28 (34)
406 cd06340 PBP1_ABC_ligand_bindin 22.7 2.4E+02 0.0053 21.4 5.2 42 31-72 53-95 (347)
407 PF11324 DUF3126: Protein of u 22.6 1.8E+02 0.0039 17.2 3.7 11 103-113 31-41 (63)
408 KOG3027 Mitochondrial outer me 22.6 1.3E+02 0.0028 22.5 3.3 66 55-130 32-99 (257)
409 PF09413 DUF2007: Domain of un 22.6 1.2E+02 0.0027 17.2 2.8 53 49-109 1-53 (67)
410 PRK01889 GTPase RsgA; Reviewed 22.4 3.9E+02 0.0084 21.0 6.5 62 62-125 130-196 (356)
411 PF13972 TetR: Bacterial trans 22.1 52 0.0011 22.1 1.2 13 5-17 35-47 (146)
412 KOG2454 Betaine aldehyde dehyd 22.1 1.5E+02 0.0033 24.3 4.0 21 55-75 230-250 (583)
413 PF11008 DUF2846: Protein of u 22.0 74 0.0016 20.6 1.9 15 99-113 40-54 (117)
414 PF12641 Flavodoxin_3: Flavodo 22.0 1.8E+02 0.0039 20.2 4.0 28 28-56 50-77 (160)
415 PF04805 Pox_E10: E10-like pro 21.9 92 0.002 18.7 2.1 18 55-72 16-34 (70)
416 KOG0733 Nuclear AAA ATPase (VC 21.7 4.2E+02 0.009 23.4 6.5 59 45-107 544-611 (802)
417 PRK09563 rbgA GTPase YlqF; Rev 21.4 3.6E+02 0.0079 20.3 6.1 22 35-56 13-34 (287)
418 PRK03625 tatE twin arginine tr 21.3 83 0.0018 18.8 1.8 27 1-28 1-27 (67)
419 PF14447 Prok-RING_4: Prokaryo 21.0 32 0.00069 19.8 -0.0 8 55-62 40-47 (55)
420 TIGR02808 short_TIGR02808 cons 20.8 45 0.00097 17.9 0.5 19 90-108 6-24 (42)
421 KOG1201 Hydroxysteroid 17-beta 20.8 3.8E+02 0.0083 20.9 5.8 69 38-111 53-124 (300)
422 KOG2863 RNA lariat debranching 20.5 99 0.0021 25.1 2.6 19 91-109 64-84 (456)
423 cd00897 UGPase_euk Eukaryotic 20.5 4.1E+02 0.009 20.6 7.2 20 112-131 115-134 (300)
424 PF13451 zf-trcl: Probable zin 20.5 70 0.0015 17.9 1.3 12 56-67 35-46 (49)
425 TIGR03190 benz_CoA_bzdN benzoy 20.2 4.1E+02 0.0089 21.0 6.1 15 99-113 342-356 (377)
426 PRK09590 celB cellobiose phosp 20.2 2.5E+02 0.0055 18.0 4.7 25 89-113 64-88 (104)
427 KOG2998 Uncharacterized conser 20.1 18 0.00039 28.1 -1.5 19 2-22 199-217 (302)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.96 E-value=1.1e-28 Score=160.83 Aligned_cols=92 Identities=33% Similarity=0.545 Sum_probs=83.5
Q ss_pred HhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHH
Q 032791 41 QNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAA 120 (133)
Q Consensus 41 ~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~ 120 (133)
.+.+++++|+||++++||+|.+++++|+++++.+.++++|..++..+.++++.+.+|++++|+|||||++|||++++.++
T Consensus 2 ~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 2 RRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred hhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 56788999999999999999999999999999866777777766667788899999999999999999999999999999
Q ss_pred HHcChHHHhhcC
Q 032791 121 VLSGQLQQLLGT 132 (133)
Q Consensus 121 ~~~g~L~~~L~~ 132 (133)
+++|+|.++|++
T Consensus 82 ~~~G~L~~~l~~ 93 (99)
T TIGR02189 82 HISGSLVPMLKQ 93 (99)
T ss_pred HHcCCHHHHHHH
Confidence 999999999953
No 2
>PHA03050 glutaredoxin; Provisional
Probab=99.96 E-value=4.5e-28 Score=160.12 Aligned_cols=97 Identities=29% Similarity=0.476 Sum_probs=84.4
Q ss_pred HHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCC---CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEee
Q 032791 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (133)
Q Consensus 36 ~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~ig 112 (133)
+.+++.+++++++|+||+++|||||.+++++|+++++ .+.++++|...+..++++++.+.+|+++||+|||||++||
T Consensus 2 ~~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iG 81 (108)
T PHA03050 2 AEEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIG 81 (108)
T ss_pred hHHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 3578889999999999999999999999999999998 3224444443345678999999999999999999999999
Q ss_pred ccHHHHHHHHcChHHHhhcC
Q 032791 113 GADDLKAAVLSGQLQQLLGT 132 (133)
Q Consensus 113 G~~~l~~~~~~g~L~~~L~~ 132 (133)
|++++.+++++|+|.++|++
T Consensus 82 G~ddl~~l~~~g~L~~~l~~ 101 (108)
T PHA03050 82 GYSDLLEIDNMDALGDILSS 101 (108)
T ss_pred ChHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999864
No 3
>PRK10824 glutaredoxin-4; Provisional
Probab=99.95 E-value=4.2e-28 Score=161.37 Aligned_cols=96 Identities=26% Similarity=0.414 Sum_probs=85.9
Q ss_pred hhHHHHHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032791 34 HSVSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G 108 (133)
.+..+++.+++++++|+||.+ |+||||++|+++|+++++.+. .+|+..+ .+++++|.+.+|++|||+|||||
T Consensus 2 ~~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~--~idi~~d-~~~~~~l~~~sg~~TVPQIFI~G 78 (115)
T PRK10824 2 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFA--YVDILQN-PDIRAELPKYANWPTFPQLWVDG 78 (115)
T ss_pred chHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCce--EEEecCC-HHHHHHHHHHhCCCCCCeEEECC
Confidence 457789999999999999999 599999999999999998744 4566555 56789999999999999999999
Q ss_pred eEeeccHHHHHHHHcChHHHhhcC
Q 032791 109 EHIGGADDLKAAVLSGQLQQLLGT 132 (133)
Q Consensus 109 ~~igG~~~l~~~~~~g~L~~~L~~ 132 (133)
++|||+|++.+++++|+|+++|++
T Consensus 79 ~~IGG~ddl~~l~~~G~L~~lL~~ 102 (115)
T PRK10824 79 ELVGGCDIVIEMYQRGELQQLIKE 102 (115)
T ss_pred EEEcChHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999853
No 4
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.6e-28 Score=157.65 Aligned_cols=96 Identities=52% Similarity=0.806 Sum_probs=91.9
Q ss_pred HHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccH
Q 032791 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGAD 115 (133)
Q Consensus 36 ~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~ 115 (133)
..+++++++.+++|+||++++||+|++++.+|...++.+.++++|...++.+++++|.+.+|++++|.|||+|++|||.+
T Consensus 3 ~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGAS 82 (104)
T ss_pred HHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHH
Confidence 45678999999999999999999999999999999998889999999998999999999999999999999999999999
Q ss_pred HHHHHHHcChHHHhhc
Q 032791 116 DLKAAVLSGQLQQLLG 131 (133)
Q Consensus 116 ~l~~~~~~g~L~~~L~ 131 (133)
++.+++++|+|.++|+
T Consensus 83 dl~~lh~~G~L~~~l~ 98 (104)
T KOG1752|consen 83 DLMALHKSGELVPLLK 98 (104)
T ss_pred HHHHHHHcCCHHHHHH
Confidence 9999999999999985
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.94 E-value=1.7e-26 Score=149.97 Aligned_cols=91 Identities=27% Similarity=0.483 Sum_probs=83.0
Q ss_pred HHHHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEe
Q 032791 37 SAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (133)
Q Consensus 37 ~~~~~~~~~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~i 111 (133)
.+++++++++++|+||++ ++||||.+++++|+++++. |.++|+..+ .+.+++|.+.+|++++|+|||||++|
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~--~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVP--FAYVNVLED-PEIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC--EEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCEEE
Confidence 367888999999999988 8999999999999999986 467788766 56788999999999999999999999
Q ss_pred eccHHHHHHHHcChHHHhh
Q 032791 112 GGADDLKAAVLSGQLQQLL 130 (133)
Q Consensus 112 gG~~~l~~~~~~g~L~~~L 130 (133)
||++++.+++++|+|.++|
T Consensus 79 GG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 79 GGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred eChHHHHHHHHCcChHHhC
Confidence 9999999999999999876
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.92 E-value=1.4e-24 Score=139.04 Aligned_cols=84 Identities=31% Similarity=0.517 Sum_probs=76.2
Q ss_pred HhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccH
Q 032791 41 QNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGAD 115 (133)
Q Consensus 41 ~~~~~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~ 115 (133)
+++++.++|+||++ ++||+|.+++++|+++++. |..+|+..+ .+++++|.+.+|..++|+|||||++|||++
T Consensus 2 ~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~--y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~ 78 (90)
T cd03028 2 KKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD--FGTFDILED-EEVRQGLKEYSNWPTFPQLYVNGELVGGCD 78 (90)
T ss_pred hhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC--eEEEEcCCC-HHHHHHHHHHhCCCCCCEEEECCEEEeCHH
Confidence 56778899999998 6999999999999999986 467787776 677899999999999999999999999999
Q ss_pred HHHHHHHcChHH
Q 032791 116 DLKAAVLSGQLQ 127 (133)
Q Consensus 116 ~l~~~~~~g~L~ 127 (133)
++.+++++|+|+
T Consensus 79 ~l~~l~~~g~L~ 90 (90)
T cd03028 79 IVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHcCCcC
Confidence 999999999985
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.91 E-value=1e-23 Score=152.99 Aligned_cols=96 Identities=23% Similarity=0.386 Sum_probs=88.2
Q ss_pred hhhHHHHHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEEC
Q 032791 33 DHSVSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN 107 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~ 107 (133)
.+++.+++++++++++|++|.+ |+||+|++++.+|+++++. |.++|+..+ ++.+++|++.+|++++|+||||
T Consensus 99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~--y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVK--YETYNIFED-PDLREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCC--EEEEEcCCC-HHHHHHHHHHhCCCCCCeEEEC
Confidence 4568899999999999999988 6999999999999999986 477888877 6778999999999999999999
Q ss_pred CeEeeccHHHHHHHHcChHHHhhc
Q 032791 108 GEHIGGADDLKAAVLSGQLQQLLG 131 (133)
Q Consensus 108 G~~igG~~~l~~~~~~g~L~~~L~ 131 (133)
|++|||++++.+++++|+|.++|.
T Consensus 176 G~~IGG~d~l~~l~~~G~L~~~l~ 199 (204)
T PTZ00062 176 GELIGGHDIIKELYESNSLRKVIP 199 (204)
T ss_pred CEEEcChHHHHHHHHcCChhhhhh
Confidence 999999999999999999999985
No 8
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.90 E-value=2.8e-23 Score=130.19 Aligned_cols=82 Identities=55% Similarity=0.905 Sum_probs=74.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC--CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHcChH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ--PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSGQL 126 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~--~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~g~L 126 (133)
|++|+++|||+|++++++|+++++. +.++++|...+..+.++++.+.+|..++|++|+||+++||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999976 55778887766677788899999999999999999999999999999999999
Q ss_pred HHhh
Q 032791 127 QQLL 130 (133)
Q Consensus 127 ~~~L 130 (133)
+++|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 9876
No 9
>PRK10638 glutaredoxin 3; Provisional
Probab=99.90 E-value=6e-23 Score=129.44 Aligned_cols=82 Identities=38% Similarity=0.673 Sum_probs=73.4
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHcChH
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSGQL 126 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~g~L 126 (133)
.+|++|++++||+|++++.+|+++++. |..+|+..+ ...++++.+.+|..++|+||+||++|||++++.+++.+|+|
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~--y~~~dv~~~-~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l 78 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVS--FQEIPIDGD-AAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGL 78 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCC--cEEEECCCC-HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCH
Confidence 479999999999999999999999986 356677666 34567888999999999999999999999999999999999
Q ss_pred HHhhc
Q 032791 127 QQLLG 131 (133)
Q Consensus 127 ~~~L~ 131 (133)
.++|+
T Consensus 79 ~~~~~ 83 (83)
T PRK10638 79 DPLLK 83 (83)
T ss_pred HHHhC
Confidence 99885
No 10
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.90 E-value=5.2e-23 Score=128.31 Aligned_cols=79 Identities=41% Similarity=0.783 Sum_probs=70.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHcChHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSGQLQQ 128 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~g~L~~ 128 (133)
|++|++++||+|.+++++|+++++. |..+|+..+ ...++++.+.+|+.++|+||+||++|||++++.+++++|+|.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~--~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~ 77 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVT--FTEIRVDGD-PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDP 77 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCC--cEEEEecCC-HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhh
Confidence 6899999999999999999999986 456677666 4557788888999999999999999999999999999999998
Q ss_pred hh
Q 032791 129 LL 130 (133)
Q Consensus 129 ~L 130 (133)
+|
T Consensus 78 ~l 79 (79)
T TIGR02181 78 LL 79 (79)
T ss_pred hC
Confidence 76
No 11
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.88 E-value=2.8e-22 Score=125.31 Aligned_cols=82 Identities=54% Similarity=0.954 Sum_probs=74.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHcChHH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSGQLQ 127 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~g~L~ 127 (133)
+|++|++++||+|.+++++|+++++.+.+++++...+..+.++++++.+|..++|++|++|+++||++++.++.++|+|+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 58999999999999999999999987667788887765677788999999999999999999999999999999999998
Q ss_pred Hh
Q 032791 128 QL 129 (133)
Q Consensus 128 ~~ 129 (133)
++
T Consensus 81 ~~ 82 (82)
T cd03419 81 KL 82 (82)
T ss_pred CC
Confidence 63
No 12
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.1e-22 Score=126.95 Aligned_cols=97 Identities=30% Similarity=0.455 Sum_probs=88.9
Q ss_pred hhHHHHHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032791 34 HSVSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G 108 (133)
.+..+++...++.++|++|.+ |.|+|..++.++|..+|+ ..|..+|+..+ +++++.|+++++|+|+||++|+|
T Consensus 2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~-v~~~~vnVL~d-~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGV-VDFAYVDVLQD-PEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCC-cceeEEeeccC-HHHHhccHhhcCCCCCceeeECC
Confidence 356788999999999999998 789999999999999994 23688899998 88999999999999999999999
Q ss_pred eEeeccHHHHHHHHcChHHHhhcC
Q 032791 109 EHIGGADDLKAAVLSGQLQQLLGT 132 (133)
Q Consensus 109 ~~igG~~~l~~~~~~g~L~~~L~~ 132 (133)
++|||+|-+.+++++|+|+++|++
T Consensus 80 EfvGG~DIv~Em~q~GELq~~l~~ 103 (105)
T COG0278 80 EFVGGCDIVREMYQSGELQTLLKE 103 (105)
T ss_pred EEeccHHHHHHHHHcchHHHHHHh
Confidence 999999999999999999999864
No 13
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.87 E-value=9e-22 Score=136.24 Aligned_cols=82 Identities=27% Similarity=0.510 Sum_probs=74.6
Q ss_pred cEEEEEeC------CChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCC----CcccEEEECCeEeeccHHH
Q 032791 48 KIVIFSKS------YCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR----RTVPQIFVNGEHIGGADDL 117 (133)
Q Consensus 48 ~Vviy~~~------~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~----~~vP~vfi~G~~igG~~~l 117 (133)
+|+||+++ +||+|.+++.+|+++++. |.++|++.+ .+.+++|++.+|. .++|+|||+|++|||.+++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~--~~e~DVs~~-~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVK--FDERDVSMD-SGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCc--EEEEECCCC-HHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 58999999 999999999999999986 578899887 5667889988775 8999999999999999999
Q ss_pred HHHHHcChHHHhhcC
Q 032791 118 KAAVLSGQLQQLLGT 132 (133)
Q Consensus 118 ~~~~~~g~L~~~L~~ 132 (133)
.+++++|+|.++|+.
T Consensus 78 ~~L~e~G~L~~lL~~ 92 (147)
T cd03031 78 LRLNESGELRKLLKG 92 (147)
T ss_pred HHHHHcCCHHHHHhh
Confidence 999999999999964
No 14
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-21 Score=122.52 Aligned_cols=77 Identities=42% Similarity=0.774 Sum_probs=64.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCH-HHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHcChH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDG-AQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSGQL 126 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~-~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~g~L 126 (133)
.|+||++++||||.+++++|++.++. |.++|+..++ .+.++.+++..|++++|+|||||+++||.+++.++...|.|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~--~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVD--YEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCC--cEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 58999999999999999999999987 4555555443 35456666667999999999999999999999999888876
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.86 E-value=6e-21 Score=117.53 Aligned_cols=74 Identities=41% Similarity=0.745 Sum_probs=65.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCC-cccEEEECCeEeeccHHHHHHHHcC
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRR-TVPQIFVNGEHIGGADDLKAAVLSG 124 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~-~vP~vfi~G~~igG~~~l~~~~~~g 124 (133)
+|++|++++||+|.+++.+|+++++. |.++|+..+ .+.++++.+.+|.. ++|+||++|++|||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~--~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVD--YEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCc--EEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 58999999999999999999999986 467788776 45567788888887 9999999999999999999999886
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.85 E-value=1.2e-20 Score=116.16 Aligned_cols=72 Identities=26% Similarity=0.437 Sum_probs=64.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
.+|++|+.++||+|++|+.+|+++++. |..+|+..+ ...++++.+.+|..++|+||+||++|||++++.++.
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~--~~~~di~~~-~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLP--YVEINIDIF-PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCc--eEEEECCCC-HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 479999999999999999999999986 467788776 455789999999999999999999999999998764
No 17
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.84 E-value=2.4e-20 Score=116.56 Aligned_cols=75 Identities=33% Similarity=0.639 Sum_probs=63.3
Q ss_pred hccCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 43 SIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 43 ~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
+.++++|++|++++||+|++++++|+++++. |.++|+..+.. .+++...+|..++|+||+||++|||++++.++.
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~--y~~idi~~~~~--~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYD--FEEIPLGNDAR--GRSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCC--cEEEECCCChH--HHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 3457889999999999999999999999987 45667765533 356777889999999999999999999998764
No 18
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.83 E-value=5.7e-20 Score=116.73 Aligned_cols=75 Identities=37% Similarity=0.681 Sum_probs=63.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCC--CcccEEEECCeEeeccHHHHHHHHc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGR--RTVPQIFVNGEHIGGADDLKAAVLS 123 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~--~~vP~vfi~G~~igG~~~l~~~~~~ 123 (133)
|+||+++|||+|.+|+++|+++++. ..|.++|+..+... ++++.+.+|. .+||+|||||+++||++++.+++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~-~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~ 80 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGIS-KADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKE 80 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHH-HHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHh
Confidence 7899999999999999999998643 23688888766433 4567788886 8999999999999999999999776
Q ss_pred C
Q 032791 124 G 124 (133)
Q Consensus 124 g 124 (133)
+
T Consensus 81 ~ 81 (86)
T TIGR02183 81 N 81 (86)
T ss_pred c
Confidence 4
No 19
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.83 E-value=5.5e-20 Score=112.78 Aligned_cols=70 Identities=37% Similarity=0.646 Sum_probs=60.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
+|++|++++||+|.+++++|+++++. |.++|+..+. . .+++...+|..++|+||+||+++||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~--~~~~~v~~~~-~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS--YEEIPLGKDI-T-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC--cEEEECCCCh-h-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 69999999999999999999999987 4566766553 2 457778889999999999999999999998764
No 20
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.82 E-value=1.6e-19 Score=114.14 Aligned_cols=74 Identities=39% Similarity=0.660 Sum_probs=62.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHh-----cCCCCeEEEEcCCCCHHHHHHHHHHHcCC--CcccEEEECCeEeeccHHHHH
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFAD-----LNEQPFVVELDLRDDGAQIQYILLDLVGR--RTVPQIFVNGEHIGGADDLKA 119 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~-----~~~~~~~~~id~~~~~~~~~~~l~~~~g~--~~vP~vfi~G~~igG~~~l~~ 119 (133)
++|++|++++||+|++|+++|++ .++. |..+|+..+..+ .+++.+.+|. .++|+|||||++|||++++.+
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~--~~~idi~~~~~~-~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFD--YRYVDIHAEGIS-KADLEKTVGKPVETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCc--EEEEECCCChHH-HHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHH
Confidence 36999999999999999999999 4553 678888776433 5677777775 899999999999999999998
Q ss_pred HHHc
Q 032791 120 AVLS 123 (133)
Q Consensus 120 ~~~~ 123 (133)
+++.
T Consensus 78 ~~~~ 81 (85)
T PRK11200 78 YVKE 81 (85)
T ss_pred HHHH
Confidence 8754
No 21
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.79 E-value=2e-18 Score=104.14 Aligned_cols=71 Identities=55% Similarity=0.923 Sum_probs=63.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
+|++|++++||+|++++.+|+++++. |.++|+..+. +.++++.+.+|..++|++|+||+++||++++.++.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~--~~~~di~~~~-~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIE--FEEIDILEDG-ELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCc--EEEEECCCCH-HHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 58999999999999999999999976 5788888774 46789999999999999999999999999998764
No 22
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.78 E-value=1.4e-18 Score=137.83 Aligned_cols=82 Identities=34% Similarity=0.516 Sum_probs=66.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHH--HHHHHH-----HHHcCCCcccEEEECCeEeeccHHHHH
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGA--QIQYIL-----LDLVGRRTVPQIFVNGEHIGGADDLKA 119 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~--~~~~~l-----~~~~g~~~vP~vfi~G~~igG~~~l~~ 119 (133)
.+|+||++++||+|+++|++|++.|+. |.++|++.+.. +..+++ ...+|.++||+|||||++|||++++.+
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~--~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIP--FTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCC--eEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 479999999999999999999999986 35666655532 222232 223689999999999999999999977
Q ss_pred HHHcChHHHhhcC
Q 032791 120 AVLSGQLQQLLGT 132 (133)
Q Consensus 120 ~~~~g~L~~~L~~ 132 (133)
..|+|.++|++
T Consensus 80 --~~g~l~~~~~~ 90 (410)
T PRK12759 80 --RAGEVIARVKG 90 (410)
T ss_pred --HhCCHHHHhcC
Confidence 89999999875
No 23
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.75 E-value=2.5e-17 Score=105.80 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=69.7
Q ss_pred EEEEEeCCC------hhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCC----CcccEEEECCeEeeccHHHH
Q 032791 49 IVIFSKSYC------PYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR----RTVPQIFVNGEHIGGADDLK 118 (133)
Q Consensus 49 Vviy~~~~C------p~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~----~~vP~vfi~G~~igG~~~l~ 118 (133)
|++|+++-- ..|++++.+|+..++. |.++|+..+ ++.+++|.+.+|. +++|+|||||++|||+|++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~--f~eiDI~~d-~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIE--FEEVDISMN-EENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCc--eEEEecCCC-HHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 677887543 5699999999999986 689999887 5567898888764 89999999999999999999
Q ss_pred HHHHcChHHHhhc
Q 032791 119 AAVLSGQLQQLLG 131 (133)
Q Consensus 119 ~~~~~g~L~~~L~ 131 (133)
++.++|+|.++|+
T Consensus 79 ~l~e~g~L~~lLk 91 (92)
T cd03030 79 EAKENNTLEEFLK 91 (92)
T ss_pred HHHhCCCHHHHhC
Confidence 9999999999985
No 24
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.4e-17 Score=120.80 Aligned_cols=94 Identities=24% Similarity=0.387 Sum_probs=86.6
Q ss_pred HHHHHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeE
Q 032791 36 VSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEH 110 (133)
Q Consensus 36 ~~~~~~~~~~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~ 110 (133)
..+.+..+....+|++|.+ |.|++.+++..+|++++++ |...|+..| +++++-+++++.|+|+||+||+|++
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~--~~~fdIL~D-eelRqglK~fSdWPTfPQlyI~GEF 204 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVN--YTIFDVLTD-EELRQGLKEFSDWPTFPQLYVKGEF 204 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCC--eeEEeccCC-HHHHHHhhhhcCCCCccceeECCEe
Confidence 4448888999999999999 6799999999999999997 588899998 7799999999999999999999999
Q ss_pred eeccHHHHHHHHcChHHHhhcC
Q 032791 111 IGGADDLKAAVLSGQLQQLLGT 132 (133)
Q Consensus 111 igG~~~l~~~~~~g~L~~~L~~ 132 (133)
+||+|-+.+++++|+|+..|+.
T Consensus 205 iGGlDIl~~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 205 IGGLDILKEMHEKGELVYTLKE 226 (227)
T ss_pred ccCcHHHHHHhhcccHHHHhhc
Confidence 9999999999999999998864
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.74 E-value=1.3e-17 Score=98.80 Aligned_cols=60 Identities=37% Similarity=0.749 Sum_probs=54.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~i 111 (133)
|++|++++||+|.+++++|++.++. |..+|+..+ ++.++++++.+|..++|+||+||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~--y~~~dv~~~-~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIP--YEEVDVDED-EEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBE--EEEEEGGGS-HHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCe--eeEcccccc-hhHHHHHHHHcCCCccCEEEECCEEC
Confidence 7899999999999999999999986 577888777 46688999999999999999999986
No 26
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.68 E-value=6.3e-16 Score=97.13 Aligned_cols=64 Identities=17% Similarity=0.302 Sum_probs=55.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGAD 115 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~ 115 (133)
+|++|++++||+|++++.+|++.|+. |.++|+..+ ++..+++.. .|..++|+++++|..++||+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~--~~~idi~~~-~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFD--FEMINVDRV-PEAAETLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCc--eEEEECCCC-HHHHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence 69999999999999999999999986 577888776 344556665 59999999999999999986
No 27
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.66 E-value=5.6e-16 Score=95.03 Aligned_cols=64 Identities=22% Similarity=0.420 Sum_probs=53.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCe-EeeccHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGE-HIGGADD 116 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~-~igG~~~ 116 (133)
|++|++++||+|++++++|+++++. |..+|+..+ ....++++. .|..++|+++++|. ++|||+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~--~~~~di~~~-~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIA--FEEINIDEQ-PEAIDYVKA-QGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCc--eEEEECCCC-HHHHHHHHH-cCCcccCEEEECCCcEEeccCH
Confidence 5899999999999999999999986 467788776 344666665 49999999999775 9999863
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.58 E-value=2.7e-14 Score=86.44 Aligned_cols=66 Identities=27% Similarity=0.548 Sum_probs=55.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADD 116 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~ 116 (133)
+|++|+.+|||+|++++.+|++.++. +..+|+..+. ...+++.+.+|..++|+++++|+.++|++.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~--~~~vdi~~~~-~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIA--FEEIDVEKDS-AAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCe--EEEEeccCCH-HHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 38899999999999999999999876 5778887763 345677778899999999999999988753
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.49 E-value=4.8e-13 Score=80.73 Aligned_cols=66 Identities=29% Similarity=0.600 Sum_probs=55.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADD 116 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~ 116 (133)
+|++|+.+|||+|++++.+|++.++. |..+|+..+ ....+++.+.++..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~--~~~~~i~~~-~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIP--FEEVDVDED-PEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCC--eEEEeCCCC-HHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 48999999999999999999999986 356666655 3445677777789999999999999999874
No 30
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.43 E-value=5.3e-13 Score=80.24 Aligned_cols=60 Identities=27% Similarity=0.342 Sum_probs=48.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEee
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~ig 112 (133)
+|++|+++|||+|++++++|+++... ..+..+|+..+ +++.+.+|..++|+++++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~-----~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF-----PDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC-----HhHHHHcCCcccCEEEECCEEEE
Confidence 58999999999999999999987311 22677787665 34667789999999999999875
No 31
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=8.5e-13 Score=98.39 Aligned_cols=84 Identities=27% Similarity=0.517 Sum_probs=74.0
Q ss_pred CCcEEEEEeC------CChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCC----CcccEEEECCeEeeccH
Q 032791 46 SNKIVIFSKS------YCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR----RTVPQIFVNGEHIGGAD 115 (133)
Q Consensus 46 ~~~Vviy~~~------~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~----~~vP~vfi~G~~igG~~ 115 (133)
...||+|+++ +.-.|..++.+|+.+++. |.+.|+..| ...+++|+...|. .++|+|||+|++|||.+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~--v~ERDVSMd-~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgae 206 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVK--VDERDVSMD-SEFREELQELLGEDEKAVSLPRVFVKGRYIGGAE 206 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceE--EEEeccccc-HHHHHHHHHHHhcccccCccCeEEEccEEeccHH
Confidence 4569999984 688999999999999987 689999888 5567888887765 68999999999999999
Q ss_pred HHHHHHHcChHHHhhcC
Q 032791 116 DLKAAVLSGQLQQLLGT 132 (133)
Q Consensus 116 ~l~~~~~~g~L~~~L~~ 132 (133)
++.++++.|+|.++|++
T Consensus 207 eV~~LnE~GkL~~lL~~ 223 (281)
T KOG2824|consen 207 EVVRLNEEGKLGKLLKG 223 (281)
T ss_pred HhhhhhhcchHHHHHhc
Confidence 99999999999999964
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.42 E-value=3.2e-12 Score=78.30 Aligned_cols=63 Identities=21% Similarity=0.486 Sum_probs=50.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHc-CCCcccEEEE-CCeEeec
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLV-GRRTVPQIFV-NGEHIGG 113 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~-g~~~vP~vfi-~G~~igG 113 (133)
+|++|+++|||+|++++.+|+++++. |..+|+..+ ....+++.+.. |..++|++++ ||..+..
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~--~~~idi~~~-~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~ 65 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAA--YEWVDIEED-EGAADRVVSVNNGNMTVPTVKFADGSFLTN 65 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCc--eEEEeCcCC-HhHHHHHHHHhCCCceeCEEEECCCeEecC
Confidence 48999999999999999999999986 466777666 34456666665 8999999976 6677765
No 33
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.24 E-value=1.5e-10 Score=75.09 Aligned_cols=81 Identities=23% Similarity=0.312 Sum_probs=61.2
Q ss_pred cEEEEEeCCC------hhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcC---------CCcccEEEECCeEee
Q 032791 48 KIVIFSKSYC------PYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVG---------RRTVPQIFVNGEHIG 112 (133)
Q Consensus 48 ~Vviy~~~~C------p~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g---------~~~vP~vfi~G~~ig 112 (133)
.|.||+++.- ..|.++..+|+..++. |..+|+..+ ++.++.+++..| ..-.|+||.||+++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~--fe~vDIa~~-e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIP--FEEVDIAMD-EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT----EEEEETTT--HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCC--cEEEeCcCC-HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 4678887544 3478999999999986 689999987 666888888773 345589999999999
Q ss_pred ccHHHHHHHHcChHHHhhc
Q 032791 113 GADDLKAAVLSGQLQQLLG 131 (133)
Q Consensus 113 G~~~l~~~~~~g~L~~~L~ 131 (133)
+++++.++.++|+|.+.|+
T Consensus 79 dye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 79 DYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EHHHHHHHHCTT-HHHHHT
T ss_pred eHHHHHHHHhhCHHHHHhC
Confidence 9999999999999999985
No 34
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.19 E-value=2.6e-10 Score=70.55 Aligned_cols=61 Identities=30% Similarity=0.540 Sum_probs=46.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCe-Eeec
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGE-HIGG 113 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~----~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~-~igG 113 (133)
+|++|+++|||+|+.+++.|+++ +....+..+|...+. ++.+.+|.+++|+++++|+ .+.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~vPt~~~~g~~~~~G 67 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-----QKAMEYGIMAVPAIVINGDVEFIG 67 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-----HHHHHcCCccCCEEEECCEEEEec
Confidence 48899999999999999999764 322336788877652 3445689999999999997 4334
No 35
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.18 E-value=1.7e-10 Score=73.64 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=56.5
Q ss_pred hHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEe
Q 032791 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (133)
Q Consensus 35 ~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~i 111 (133)
..++.++++.++-+|.+|+.+|||+|..+.++++++... ..+..+|.... .++.+.+|..++|++++||+.+
T Consensus 2 ~~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-----~e~a~~~~V~~vPt~vidG~~~ 76 (89)
T cd03026 2 DLLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-----QDEVEERGIMSVPAIFLNGELF 76 (89)
T ss_pred hHHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-----HHHHHHcCCccCCEEEECCEEE
Confidence 346677777777789999999999999999999887421 12566676554 4556678999999999999866
Q ss_pred e
Q 032791 112 G 112 (133)
Q Consensus 112 g 112 (133)
+
T Consensus 77 ~ 77 (89)
T cd03026 77 G 77 (89)
T ss_pred E
Confidence 4
No 36
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.06 E-value=2.8e-09 Score=65.81 Aligned_cols=71 Identities=13% Similarity=0.276 Sum_probs=55.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEeeccHHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGADDLKAAVL 122 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~igG~~~l~~~~~ 122 (133)
+++|+.+.||+|++++.+|+++++.+ ..+++... +...+++.+.++..++|++.. +|..+.+...|.++..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y--~~~~v~~~-~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDV--ILYPCPKG-SPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcE--EEEECCCC-hHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 67999999999999999999999863 44565443 333456777888999999987 3678888888877654
No 37
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.02 E-value=2.6e-09 Score=63.03 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=54.9
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAA 120 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~ 120 (133)
.+|+.++||+|.+++.+|+..++.+..+.++....... ++.+.++..++|.++.+|..+++...+.++
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999998755566665443221 566778899999999999999988877665
No 38
>PHA02125 thioredoxin-like protein
Probab=99.01 E-value=2e-09 Score=66.25 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=43.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~i 111 (133)
|++|+++|||.|+.+++.|++... .+.++|.... .++.+.++..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~--~~~~vd~~~~-----~~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEY--TYVDVDTDEG-----VELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhh--eEEeeeCCCC-----HHHHHHcCCceeCeEE-CCEEE
Confidence 789999999999999999987653 3577776554 3667778999999987 67544
No 39
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.97 E-value=1.2e-08 Score=63.87 Aligned_cols=55 Identities=24% Similarity=0.536 Sum_probs=43.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC--CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQ--PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~--~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G 108 (133)
++++|++++|+.|..|+..|++.... ..+..+|+..+ +++...+|. .+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d-----~~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED-----PELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT-----HHHHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC-----HHHHHHhcC-CCCEEEEcC
Confidence 58999999999999999999987532 23788899876 346677885 799999998
No 40
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.94 E-value=9.1e-09 Score=68.20 Aligned_cols=62 Identities=24% Similarity=0.398 Sum_probs=45.3
Q ss_pred HHhhccCCcEEEE-EeCCChhHHHHHHHHHhcCCCC---eEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 40 VQNSIFSNKIVIF-SKSYCPYCLRAKRIFADLNEQP---FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 40 ~~~~~~~~~Vviy-~~~~Cp~C~~ak~~L~~~~~~~---~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
..++.+..++++| +++|||+|+.++++|+++.... .+..+|.... +++...+|..++|++++
T Consensus 16 ~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~-----~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 16 FKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED-----KEKAEKYGVERVPTTIF 81 (113)
T ss_pred HHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC-----HHHHHHcCCCcCCEEEE
Confidence 3345555556555 7899999999999998875321 2567777654 46777889999999987
No 41
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.93 E-value=9.1e-09 Score=63.19 Aligned_cols=69 Identities=13% Similarity=0.315 Sum_probs=52.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEEC----CeEeeccHHHHHHHH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN----GEHIGGADDLKAAVL 122 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~----G~~igG~~~l~~~~~ 122 (133)
++.+|+.+.||+|++++.+|...++.+ ..+++... . ..++ +..+..++|+++++ |..+.....+.++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y--~~~~~~~~--~-~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPY--EVVEVNPV--S-RKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCce--EEEECCch--h-HHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHH
Confidence 578999999999999999999999863 34444322 1 2234 34688999999987 788888888877643
No 42
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.92 E-value=1.2e-08 Score=61.70 Aligned_cols=68 Identities=22% Similarity=0.382 Sum_probs=51.4
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEEC-CeEeeccHHHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGGADDLKAAVL 122 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-G~~igG~~~l~~~~~ 122 (133)
.+|+.++||+|++++-+|...|+.+..+.++.... . .. .+..+..++|+++.+ |..+++...+.++..
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~-~---~~-~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDE-A---TP-IRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCch-H---HH-HHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 47999999999999999999998644444443221 1 22 345678899999987 889999998887653
No 43
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.89 E-value=1.5e-08 Score=67.42 Aligned_cols=59 Identities=14% Similarity=0.400 Sum_probs=46.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC----CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEee
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~----~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~ig 112 (133)
|+-|+++|||.|+.+.+.|+++..+ ..+..+|++.+ +++.+.+|..++|++++ +|+.++
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-----~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-----PDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-----HHHHHHcCCCCCCEEEEEECCEEEE
Confidence 5669999999999999999776422 13678888876 46777889999999954 888764
No 44
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.87 E-value=3e-08 Score=60.11 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=53.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEEC-CeEeeccHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGGADDLKAA 120 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-G~~igG~~~l~~~ 120 (133)
++|+.++||+|.+++.+|.+.|+.+..+.+|.... .+++.+.++..++|++..+ |..+.....+.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~----~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNK----PAEMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCC----CHHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 68999999999999999999998755666666433 2466677889999999995 8888776666554
No 45
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.84 E-value=3.6e-08 Score=66.31 Aligned_cols=65 Identities=12% Similarity=0.288 Sum_probs=41.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC--CeEEEEcCCCC-------HHHHHHHHHHHc----CCCcccEEEE--CCeEeec
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ--PFVVELDLRDD-------GAQIQYILLDLV----GRRTVPQIFV--NGEHIGG 113 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~--~~~~~id~~~~-------~~~~~~~l~~~~----g~~~vP~vfi--~G~~igG 113 (133)
++.|+++|||+|+.+.+.|+++..+ ..+..+|++.+ ..++ .++.+.+ +..++|++++ +|+.++.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~-~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~ 105 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDL-TAFRSRFGIPTSFMGTPTFVHITDGKQVSV 105 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHH-HHHHHHcCCcccCCCCCEEEEEeCCeEEEE
Confidence 7889999999999999988776411 11344555422 1122 3444444 4556999954 8876654
Q ss_pred c
Q 032791 114 A 114 (133)
Q Consensus 114 ~ 114 (133)
+
T Consensus 106 ~ 106 (122)
T TIGR01295 106 R 106 (122)
T ss_pred E
Confidence 3
No 46
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.83 E-value=4.9e-08 Score=59.06 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=54.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
+++|+.++||+|++++.+|+..|+.+..+.+|.... .+++.+.....++|++..+|..+.....+.++..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~----~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNP----PEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCC----CHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 368999999999999999999999755555554432 2456667788899999989888887777766643
No 47
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.82 E-value=5.6e-08 Score=61.62 Aligned_cols=72 Identities=22% Similarity=0.388 Sum_probs=56.8
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEEC-CeEeeccHHHHHHH
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGGADDLKAAV 121 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-G~~igG~~~l~~~~ 121 (133)
...+.+|+.+.||+|++++.+|...++.+..+.+|.... .+++.+.++..++|++.++ |..+.....+.++.
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~----~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yL 88 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDK----PDWFLEKNPQGKVPALEIDEGKVVYESLIICEYL 88 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCC----cHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhh
Confidence 456999999999999999999999998755555554332 2456677888999999998 88888877776653
No 48
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.82 E-value=2.5e-08 Score=60.23 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=53.3
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE-CCeEeeccHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIGGADDLKAA 120 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~G~~igG~~~l~~~ 120 (133)
.+|+.++||+|++++.+|...++.+..+.++.... +...+++.+.++..++|++.+ +|..+.....+..+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAG-EQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccC-ccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence 68999999999999999999998765666665432 112345677788999999997 66777776666554
No 49
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.80 E-value=4e-08 Score=60.64 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=37.0
Q ss_pred cEEEEEeCCChhHHHHHH----HHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEe
Q 032791 48 KIVIFSKSYCPYCLRAKR----IFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~----~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~i 111 (133)
+|.+|+ +|||.|+.+.+ ++++++....++.+| +.++ ...+|..++|++++||+.+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~-----a~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNE-----ILEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHH-----HHHcCCCcCCEEEECCEEE
Confidence 355665 99999999955 555666543344444 2222 2346999999999999655
No 50
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.80 E-value=4.7e-08 Score=59.36 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=56.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
+.+|+.+.||+|++++.+|+..|+.+..+.+|.... +...+++.+.+....+|.+..+|..+.....+..+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKG-EHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccC-CcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 368999999999999999999999765666665433 222467777888889999999998887777776654
No 51
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.79 E-value=2.7e-08 Score=72.80 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=53.7
Q ss_pred chhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032791 32 ADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (133)
Q Consensus 32 ~~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G 108 (133)
.+++..+.+.+.-++-.|++|+++|||+|..++.+++++... ..+..+|...+ +++.+.+|..++|++++++
T Consensus 120 L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-----~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 120 LSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-----PDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-----HHHHHHhCCccCCEEEEec
Confidence 345566777766666668889999999999999999886421 12456777665 3556678999999999865
Q ss_pred e
Q 032791 109 E 109 (133)
Q Consensus 109 ~ 109 (133)
+
T Consensus 195 ~ 195 (215)
T TIGR02187 195 G 195 (215)
T ss_pred C
Confidence 3
No 52
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.73 E-value=1.1e-07 Score=58.20 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=56.2
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
+|+.++||+|++++-+|+..++.+.++.++.... .+.+.+.++..++|++..||..+.+...+.++.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~----~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK----RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST----SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc----hhHHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence 5899999999999999999998655666665443 4566777899999999999999999888877654
No 53
>PHA02278 thioredoxin-like protein
Probab=98.73 E-value=7.7e-08 Score=62.90 Aligned_cols=63 Identities=17% Similarity=0.357 Sum_probs=45.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC----CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEee
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~----~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~ig 112 (133)
++-|+++||+.|+.+.+.++++... ..+..+|++.+... .+.+.+.++..++|++.+ ||+.++
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d-~~~l~~~~~I~~iPT~i~fk~G~~v~ 86 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD-REKAVKLFDIMSTPVLIGYKDGQLVK 86 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc-cHHHHHHCCCccccEEEEEECCEEEE
Confidence 6678999999999999998876321 12577777654211 345778889999999954 888663
No 54
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.68 E-value=2.2e-08 Score=81.77 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=61.4
Q ss_pred ccchhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCC-CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032791 30 TEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ-PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~-~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G 108 (133)
...+++..+.++++-++..|.+|.+++||||.++.+.++++... |. +..+..+. ...+++.+.++..+||++|+||
T Consensus 101 ~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~-i~~~~id~--~~~~~~~~~~~v~~VP~~~i~~ 177 (517)
T PRK15317 101 PKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPN-ITHTMIDG--ALFQDEVEARNIMAVPTVFLNG 177 (517)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCC-ceEEEEEc--hhCHhHHHhcCCcccCEEEECC
Confidence 34578888999998888899999999999999999999887542 33 33333321 2246777788999999999999
Q ss_pred eEee
Q 032791 109 EHIG 112 (133)
Q Consensus 109 ~~ig 112 (133)
+.+.
T Consensus 178 ~~~~ 181 (517)
T PRK15317 178 EEFG 181 (517)
T ss_pred cEEE
Confidence 7653
No 55
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.68 E-value=2.2e-08 Score=81.76 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=61.7
Q ss_pred ccchhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCC-CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032791 30 TEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ-PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~-~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G 108 (133)
...+++..+.++++-++..|.+|.+++||||.+++..+.++... |. ++.+..+. ...+++.+.++..+||++|+||
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~-i~~~~id~--~~~~~~~~~~~v~~VP~~~i~~ 178 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPN-ISHTMIDG--ALFQDEVEALGIQGVPAVFLNG 178 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-ceEEEEEc--hhCHHHHHhcCCcccCEEEECC
Confidence 34578888999988888899999999999999999999887643 43 44444222 2246677788999999999999
Q ss_pred eEee
Q 032791 109 EHIG 112 (133)
Q Consensus 109 ~~ig 112 (133)
+.++
T Consensus 179 ~~~~ 182 (515)
T TIGR03140 179 EEFH 182 (515)
T ss_pred cEEE
Confidence 8664
No 56
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.67 E-value=1.2e-07 Score=60.36 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=44.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEe
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~i 111 (133)
-++.|+++||+.|++..+.+.++. ....+..+|...+ ..+.+.++..++|++++ +|+.+
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-----PQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-----HHHHHHcCCCCCCEEEEEeCCEEe
Confidence 377899999999999998887653 1222577787765 45667789999999964 77655
No 57
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.67 E-value=2.3e-07 Score=60.30 Aligned_cols=75 Identities=11% Similarity=0.117 Sum_probs=50.4
Q ss_pred hHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCe
Q 032791 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGE 109 (133)
Q Consensus 35 ~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~ 109 (133)
+..+.+.+.....-++-|+++||+.|+...+.|+++... ..+..+|.+.+. . ...+.+.++..++|++++ +|+
T Consensus 5 ~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-~-~~~l~~~~~V~~~Pt~~~~~~G~ 82 (103)
T cd02985 5 ELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-S-TMELCRREKIIEVPHFLFYKDGE 82 (103)
T ss_pred HHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-H-HHHHHHHcCCCcCCEEEEEeCCe
Confidence 344444443333336779999999999999998775311 126778876652 2 346777789999999854 887
Q ss_pred Ee
Q 032791 110 HI 111 (133)
Q Consensus 110 ~i 111 (133)
.+
T Consensus 83 ~v 84 (103)
T cd02985 83 KI 84 (103)
T ss_pred EE
Confidence 55
No 58
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.65 E-value=2.7e-07 Score=55.58 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=54.0
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAA 120 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~ 120 (133)
++|+.+.||+|.+++.+|...++.+..+.+|.... +...+++.+.+...++|++..+|..+.....+.++
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKG-ETRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCc-ccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999998755566665332 22235566677788999999999988877766554
No 59
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.65 E-value=4.4e-08 Score=64.79 Aligned_cols=34 Identities=15% Similarity=0.458 Sum_probs=28.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~ 84 (133)
|++|+.++||+|++|+++|+++++. |..+|+..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVD--YTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCc--eEEecccCC
Confidence 5799999999999999999999987 456666544
No 60
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.65 E-value=1.4e-07 Score=61.03 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=39.5
Q ss_pred EEEEEeCCChhHHHHHHHH-------HhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 49 IVIFSKSYCPYCLRAKRIF-------ADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L-------~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
++.|+++||++|++....+ +.++-...+..+|...+... ..++.+.++..++|++++
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~-~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPE-ITALLKRFGVFGPPTYLF 78 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHH-HHHHHHHcCCCCCCEEEE
Confidence 6689999999999988654 12221223677787654332 357777889999999854
No 61
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.58 E-value=4e-07 Score=60.28 Aligned_cols=59 Identities=12% Similarity=0.270 Sum_probs=45.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEE--ECCeEee
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIF--VNGEHIG 112 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf--i~G~~ig 112 (133)
++.|+++||+.|+.+.+.|+++... ..++.+|.... .++.+.++..++|++. -+|+.++
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-----~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-----PFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-----HHHHHHCCCccCCEEEEEECCEEEE
Confidence 6668889999999999998775321 23788888776 3566778999999994 4887664
No 62
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.1e-07 Score=65.62 Aligned_cols=72 Identities=25% Similarity=0.329 Sum_probs=51.4
Q ss_pred hHHHHHHhhccC-Cc-EEEEEeCCChhHHHHHHHHHhcCCCC----eEEEEcCCCCHHHHHHHHHHHcCCCcccEEE--E
Q 032791 35 SVSAFVQNSIFS-NK-IVIFSKSYCPYCLRAKRIFADLNEQP----FVVELDLRDDGAQIQYILLDLVGRRTVPQIF--V 106 (133)
Q Consensus 35 ~~~~~~~~~~~~-~~-Vviy~~~~Cp~C~~ak~~L~~~~~~~----~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf--i 106 (133)
+..+.-...+++ .+ +|.|+++||..|+-..+.|+++-.++ .+..+|.+.+ .+|...|+..++|+++ -
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~-----~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH-----PELAEDYEISAVPTVLVFK 123 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc-----cchHhhcceeeeeEEEEEE
Confidence 333444444433 33 66799999999999999998875332 2677788776 4677788999999995 4
Q ss_pred CCeEe
Q 032791 107 NGEHI 111 (133)
Q Consensus 107 ~G~~i 111 (133)
||+.+
T Consensus 124 nGe~~ 128 (150)
T KOG0910|consen 124 NGEKV 128 (150)
T ss_pred CCEEe
Confidence 88755
No 63
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.57 E-value=6.6e-07 Score=57.29 Aligned_cols=59 Identities=20% Similarity=0.403 Sum_probs=43.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEee
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~ig 112 (133)
++.|+++||+.|+.+.+.++++. -...+..+|...+ .++....+..++|++++ +|+.++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-----~~l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-----QEIAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-----HHHHHHCCCeeccEEEEEECCeEEE
Confidence 66788899999999999987742 1223678888765 34566779999999965 777663
No 64
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.57 E-value=1e-06 Score=61.50 Aligned_cols=59 Identities=22% Similarity=0.400 Sum_probs=42.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC-----CCeEEEEcCCCCHHHHHHHHHHHcCCCc------ccEE--EECCeEee
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNE-----QPFVVELDLRDDGAQIQYILLDLVGRRT------VPQI--FVNGEHIG 112 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~-----~~~~~~id~~~~~~~~~~~l~~~~g~~~------vP~v--fi~G~~ig 112 (133)
++.|+++|||.|+...+.++++.. ...+..+|...+. .+.+.++..+ +|++ |-+|+.++
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~-----~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP-----NVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH-----HHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 778999999999999998876531 1236788887762 3445556655 9998 45888774
No 65
>PTZ00051 thioredoxin; Provisional
Probab=98.56 E-value=4e-07 Score=58.01 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=46.9
Q ss_pred HHhhccCCc--EEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEee
Q 032791 40 VQNSIFSNK--IVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (133)
Q Consensus 40 ~~~~~~~~~--Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~ig 112 (133)
+.++++..+ ++.|+++||+.|++....|.++... ..+..+|.... ..+.+.++..++|++++ +|+.++
T Consensus 11 ~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 11 FESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL-----SEVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch-----HHHHHHCCCceeeEEEEEeCCeEEE
Confidence 344444444 6679999999999999988775311 22567777653 35566789999999854 776554
No 66
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.9e-07 Score=55.70 Aligned_cols=67 Identities=25% Similarity=0.435 Sum_probs=50.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHH-----------HcCCCcccEEEE-CCeEeeccH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLD-----------LVGRRTVPQIFV-NGEHIGGAD 115 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~-----------~~g~~~vP~vfi-~G~~igG~~ 115 (133)
+-++|++..||.|..+++.|++++++ |..++|..+...+++.|.- ..|+-.+|.+.. ||+.|-| +
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~--yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~ 79 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVD--YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-D 79 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCC--ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-c
Confidence 34899999999999999999999998 4566777766666555532 247789999977 5666655 4
Q ss_pred HH
Q 032791 116 DL 117 (133)
Q Consensus 116 ~l 117 (133)
++
T Consensus 80 Dl 81 (85)
T COG4545 80 DL 81 (85)
T ss_pred hh
Confidence 44
No 67
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.51 E-value=8.5e-07 Score=54.21 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=56.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
+++|+.+.||+|++++-+|.++|+.+..+.+|.... +...+++.+.+....+|++..||..+.....+.++.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLS-EHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcC-ccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHh
Confidence 468999999999999999999999766666666432 122356778888999999999999888877776653
No 68
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.51 E-value=6.7e-07 Score=59.22 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=49.3
Q ss_pred CCcEEEEEeCC--ChhHHHHHHHHHhcCCCC----eEEEEcCCCCHHHHHHHHHHHcCCCcccEEE--ECCeEeecc
Q 032791 46 SNKIVIFSKSY--CPYCLRAKRIFADLNEQP----FVVELDLRDDGAQIQYILLDLVGRRTVPQIF--VNGEHIGGA 114 (133)
Q Consensus 46 ~~~Vviy~~~~--Cp~C~~ak~~L~~~~~~~----~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf--i~G~~igG~ 114 (133)
...|+.|+.+| ||.|+.+.+.|+++..++ .+..+|+..+ +++...++.+++|++. -+|+.++.+
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-----~~la~~f~V~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-----QALAARFGVLRTPALLFFRDGRYVGVL 99 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-----HHHHHHcCCCcCCEEEEEECCEEEEEE
Confidence 44588899996 999999999998874321 2567888776 3777888999999994 499877644
No 69
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.50 E-value=2.7e-06 Score=54.10 Aligned_cols=72 Identities=24% Similarity=0.456 Sum_probs=50.8
Q ss_pred hhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--C
Q 032791 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--N 107 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~ 107 (133)
++..+.+.+ -...-|+.|+++||+.|+..++.|.++. ....+..+|...+ ..+.+.++...+|++++ +
T Consensus 7 ~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 7 ENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-----KELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp TTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-----HHHHHHTTCSSSSEEEEEET
T ss_pred HHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-----chhhhccCCCCCCEEEEEEC
Confidence 344455554 2223377899999999999999886652 2334788888765 45667789999999954 7
Q ss_pred CeEe
Q 032791 108 GEHI 111 (133)
Q Consensus 108 G~~i 111 (133)
|+.+
T Consensus 81 g~~~ 84 (103)
T PF00085_consen 81 GKEV 84 (103)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7655
No 70
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.49 E-value=4.3e-07 Score=74.93 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=58.2
Q ss_pred cchhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCC-Ce--EEEEcCCCCHHHHHHHHHHHcCCCcccEEEEC
Q 032791 31 EADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ-PF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFVN 107 (133)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~-~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~ 107 (133)
..+++..+.++.+-++..|.+|.+++||+|.++.+.++++-.. |. ...+|.... +++.+.++..+||.++||
T Consensus 462 ~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~-----~~~~~~~~v~~vP~~~i~ 536 (555)
T TIGR03143 462 PLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF-----PDLKDEYGIMSVPAIVVD 536 (555)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc-----HHHHHhCCceecCEEEEC
Confidence 4577888999988888889999999999999999988776322 22 344455443 566777899999999999
Q ss_pred CeE
Q 032791 108 GEH 110 (133)
Q Consensus 108 G~~ 110 (133)
|+.
T Consensus 537 ~~~ 539 (555)
T TIGR03143 537 DQQ 539 (555)
T ss_pred CEE
Confidence 964
No 71
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.48 E-value=5.1e-07 Score=58.88 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=27.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRD 83 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~ 83 (133)
|++|+.++||+|++++++|++.++.+ ..+|+..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~--~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEY--EFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCc--EEEeecc
Confidence 57999999999999999999999874 4555543
No 72
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=4.3e-07 Score=69.05 Aligned_cols=78 Identities=15% Similarity=0.310 Sum_probs=57.2
Q ss_pred hhhHHHHHHhhccCCc-EEEEEeCCChhHHHHHHHHHhcCC----CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEE--E
Q 032791 33 DHSVSAFVQNSIFSNK-IVIFSKSYCPYCLRAKRIFADLNE----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQI--F 105 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~~-Vviy~~~~Cp~C~~ak~~L~~~~~----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~v--f 105 (133)
++.....+-+.....+ +|-|+.|||+.|+...+.|+++-. ......+|++.+ +.+...+|.+++|+| |
T Consensus 30 ~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-----p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 30 EANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-----PMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred HhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-----hhHHHHhCcCcCCeEEEe
Confidence 3445555555555555 556899999999999999988632 222567777766 456667899999999 6
Q ss_pred ECCeEeeccH
Q 032791 106 VNGEHIGGAD 115 (133)
Q Consensus 106 i~G~~igG~~ 115 (133)
++|+.|-||.
T Consensus 105 ~dGqpVdgF~ 114 (304)
T COG3118 105 KDGQPVDGFQ 114 (304)
T ss_pred eCCcCccccC
Confidence 7999998774
No 73
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.47 E-value=2.2e-06 Score=52.71 Aligned_cols=60 Identities=23% Similarity=0.484 Sum_probs=43.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC---CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEee
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~ig 112 (133)
-+++|+++||+.|+++.+.+++... ...+..+|...+ ..+.+.++...+|++++ +|+.++
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN-----PELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC-----hhHHHhcCcccccEEEEEECCEEEE
Confidence 3888999999999999999988421 122677777665 34455678899999876 777443
No 74
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.46 E-value=1.4e-06 Score=55.29 Aligned_cols=58 Identities=14% Similarity=0.341 Sum_probs=42.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC----CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEE--ECCeEe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIF--VNGEHI 111 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~----~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf--i~G~~i 111 (133)
++.|+++||+.|+++.+.|+++... ..+..+|.... .++.+.++..++|+++ .+|+.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-----PEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-----HHHHHhcCCccccEEEEEECCEEE
Confidence 6789999999999999998775322 22667777654 4566778999999884 477754
No 75
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.46 E-value=1.7e-06 Score=58.88 Aligned_cols=34 Identities=18% Similarity=0.397 Sum_probs=28.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~ 84 (133)
|++|+.++||+|++|+++|++.++.+ ..+|+..+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~--~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPF--TERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCc--EEeeccCC
Confidence 78999999999999999999999973 55565443
No 76
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.45 E-value=1.3e-06 Score=56.54 Aligned_cols=57 Identities=16% Similarity=0.322 Sum_probs=40.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC----CCC-eEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLN----EQP-FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~----~~~-~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~i 111 (133)
++.|+++|||.|+...+.|+.+. ... .+..+|.+ + ..+.+.++..++|++++ +|+.+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-----~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-----IDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-----HHHHHHcCCCcCcEEEEEECCEEE
Confidence 67799999999999998887652 111 25566665 3 23456779999998854 78644
No 77
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.44 E-value=7.7e-07 Score=57.63 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=39.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
++.|+++||++|+...+.|+++... ..+..+|.... ...+.+.++..++|++++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~----~~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI----KPSLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC----CHHHHHhcCCeecCEEEE
Confidence 7779999999999999998776421 11566776522 246667789999999854
No 78
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.44 E-value=1.2e-06 Score=57.14 Aligned_cols=71 Identities=21% Similarity=0.396 Sum_probs=42.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc---C----CCCeEEEEcCCCCHH---------------HHHHHHHHHcCCCcccEE
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADL---N----EQPFVVELDLRDDGA---------------QIQYILLDLVGRRTVPQI 104 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~---~----~~~~~~~id~~~~~~---------------~~~~~l~~~~g~~~vP~v 104 (133)
..+++|+.+|||+|++..+.+.+. . ....++.+++..+.. ....++.+.+|..++|++
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~ 86 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTI 86 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEE
Confidence 348889999999999997777642 1 112356666654321 123568888899999999
Q ss_pred EE-C--Ce---EeeccHHH
Q 032791 105 FV-N--GE---HIGGADDL 117 (133)
Q Consensus 105 fi-~--G~---~igG~~~l 117 (133)
++ | |+ .+.|+-.-
T Consensus 87 ~~~d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 87 VFLDKDGKIVYRIPGYLSP 105 (112)
T ss_dssp EECTTTSCEEEEEESS--H
T ss_pred EEEcCCCCEEEEecCCCCH
Confidence 76 4 66 44565433
No 79
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.44 E-value=7.9e-07 Score=59.38 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=43.1
Q ss_pred HHHHhhccCC-c--EEEEEeCCChhHHHHHHHHH-------hcCCCCeEEEEcCCCCHHH--------HHHHHHHHcCCC
Q 032791 38 AFVQNSIFSN-K--IVIFSKSYCPYCLRAKRIFA-------DLNEQPFVVELDLRDDGAQ--------IQYILLDLVGRR 99 (133)
Q Consensus 38 ~~~~~~~~~~-~--Vviy~~~~Cp~C~~ak~~L~-------~~~~~~~~~~id~~~~~~~--------~~~~l~~~~g~~ 99 (133)
+.+.++.+.+ + ++.|+++|||+|++..+.+. .+.-...++.+|+..+... -...+...++..
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 4445555555 3 67799999999999886552 1111222566776543100 125677788999
Q ss_pred cccEEEE
Q 032791 100 TVPQIFV 106 (133)
Q Consensus 100 ~vP~vfi 106 (133)
++|++++
T Consensus 84 ~~Pt~~~ 90 (125)
T cd02951 84 FTPTVIF 90 (125)
T ss_pred cccEEEE
Confidence 9999754
No 80
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.43 E-value=1.3e-06 Score=53.86 Aligned_cols=54 Identities=26% Similarity=0.521 Sum_probs=36.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeE
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEH 110 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~----~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~ 110 (133)
+|.+ ..++||+|.++.+.+++. +++ +.-+|. .+ .+++ ..+|..++|+++|||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~--~ei~~~-~~----~~~~-~~ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIE--VEIIDI-ED----FEEI-EKYGVMSVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEE--EEEEET-TT----HHHH-HHTT-SSSSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCe--EEEEEc-cC----HHHH-HHcCCCCCCEEEECCEE
Confidence 4667 567799999888876654 432 333344 43 2444 66799999999999984
No 81
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.7e-07 Score=58.02 Aligned_cols=58 Identities=19% Similarity=0.376 Sum_probs=44.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCe---EEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPF---VVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~---~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~i 111 (133)
|+-|+++||+.|+...+.+.++..++. ++.+|+++ -.++.+..+..++|++.+ +|+-+
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-----~~~~~~~~~V~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-----LEEVAKEFNVKAMPTFVFYKGGEEV 87 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-----CHhHHHhcCceEeeEEEEEECCEEE
Confidence 445899999999999999998864432 77888876 246667779999999943 66533
No 82
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.41 E-value=1.4e-06 Score=55.94 Aligned_cols=61 Identities=16% Similarity=0.346 Sum_probs=44.5
Q ss_pred ccCCcEEEEEeCCChhHHHHHHHHHhcCC-----CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCe
Q 032791 44 IFSNKIVIFSKSYCPYCLRAKRIFADLNE-----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGE 109 (133)
Q Consensus 44 ~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~-----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~ 109 (133)
++...++.|+++|||.|++..+.++++.. ...+..+|...+ ..+.+.++..++|++++ +|+
T Consensus 15 ~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 15 LEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-----PGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred hCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-----HhHHHHcCCcccCEEEEeCCCC
Confidence 34456889999999999999999877631 122566776654 34566779999999975 665
No 83
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.40 E-value=1.9e-06 Score=56.80 Aligned_cols=61 Identities=20% Similarity=0.374 Sum_probs=44.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEE--ECCeEeeccH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIF--VNGEHIGGAD 115 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf--i~G~~igG~~ 115 (133)
++.|+++||+.|+...+.|+++... ..+..+|.... .+.+.++..++|++. -+|+.++.+.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~------~l~~~~~i~~~Pt~~~f~~G~~v~~~~ 93 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA------FLVNYLDIKVLPTLLVYKNGELIDNIV 93 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh------HHHHhcCCCcCCEEEEEECCEEEEEEe
Confidence 5679999999999999998875321 12577776532 667778999999994 4898775443
No 84
>PRK09381 trxA thioredoxin; Provisional
Probab=98.40 E-value=1.3e-06 Score=56.83 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=43.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEee
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~ig 112 (133)
-++.|+++|||.|+...+.|+++. -...+..+|.... ..+.+.++..++|++++ +|+.++
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-----PGTAPKYGIRGIPTLLLFKNGEVAA 89 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-----hhHHHhCCCCcCCEEEEEeCCeEEE
Confidence 377799999999999998887642 2223677777665 23456679999999965 887664
No 85
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.39 E-value=4e-06 Score=55.11 Aligned_cols=59 Identities=15% Similarity=0.410 Sum_probs=42.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC-----CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEE--ECCeEe
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNE-----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIF--VNGEHI 111 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~-----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf--i~G~~i 111 (133)
-++.|+++||+.|+...+.+.++.. +..+..+|...+ +.+....|..++|+++ -+|+.+
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-----~~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-----RRLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-----HHHHHHcCCccCCEEEEEECCEEE
Confidence 3777999999999988887755421 122567777654 3456677999999985 488755
No 86
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.38 E-value=4.5e-06 Score=50.76 Aligned_cols=73 Identities=8% Similarity=0.027 Sum_probs=56.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
+.+|+.+.||+|++++-+|...++.+..+.++.... +...+.+.+.+....+|.+..+|..+.....+.++..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKG-EHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCcccc-ccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 578999999999999999999998755555565432 1223456677888999999999988888777777654
No 87
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.37 E-value=2.3e-06 Score=56.80 Aligned_cols=71 Identities=15% Similarity=0.340 Sum_probs=50.9
Q ss_pred hHHHHHHhhccCCc-EEEEEeCCChhHHHHHHHHHhcCCC----CeEEEEcCCCCHHHHHHHHHHHcCCCcccEE--EEC
Q 032791 35 SVSAFVQNSIFSNK-IVIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTVPQI--FVN 107 (133)
Q Consensus 35 ~~~~~~~~~~~~~~-Vviy~~~~Cp~C~~ak~~L~~~~~~----~~~~~id~~~~~~~~~~~l~~~~g~~~vP~v--fi~ 107 (133)
+..+++.+. .... |+-|+++|||.|+..-+.|.++..+ ..+..+|+++. +++.+.++....|++ |-+
T Consensus 4 ~~d~~i~~~-~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev-----~dva~~y~I~amPtfvffkn 77 (114)
T cd02986 4 EVDQAIKST-AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV-----PVYTQYFDISYIPSTIFFFN 77 (114)
T ss_pred HHHHHHHhc-CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc-----HHHHHhcCceeCcEEEEEEC
Confidence 344555544 2333 4559999999999999999887522 12677888765 467777888889988 448
Q ss_pred CeEe
Q 032791 108 GEHI 111 (133)
Q Consensus 108 G~~i 111 (133)
|+|+
T Consensus 78 gkh~ 81 (114)
T cd02986 78 GQHM 81 (114)
T ss_pred CcEE
Confidence 9887
No 88
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.35 E-value=1.9e-06 Score=55.38 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=42.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC----CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNE----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~i 111 (133)
++.|+++||++|++..+.++++.. ...+..+|...+ +.+.+.++..++|++++ +|+.+
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~ 85 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-----RMLCRSQGVNSYPSLYVFPSGMNP 85 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-----HHHHHHcCCCccCEEEEEcCCCCc
Confidence 777999999999999999877631 112567787765 34566779999999954 67533
No 89
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.35 E-value=5.5e-06 Score=55.89 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=44.5
Q ss_pred HHHhhccCCc--EEEEEeCCChhHHHHHH-HH------HhcCCCCeEEEEcCCCCHHH---HHHHHHHHcCCCcccEEEE
Q 032791 39 FVQNSIFSNK--IVIFSKSYCPYCLRAKR-IF------ADLNEQPFVVELDLRDDGAQ---IQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 39 ~~~~~~~~~~--Vviy~~~~Cp~C~~ak~-~L------~~~~~~~~~~~id~~~~~~~---~~~~l~~~~g~~~vP~vfi 106 (133)
.++++.++++ ++.|+++||++|+.... .+ +.+.-.+..+.+|....++. ..+.....+|..++|++.+
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf 86 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF 86 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 3445554444 44588899999998865 22 22232333677787664322 1222333568999999965
Q ss_pred ---CCeEe
Q 032791 107 ---NGEHI 111 (133)
Q Consensus 107 ---~G~~i 111 (133)
+|+.+
T Consensus 87 l~~~G~~~ 94 (124)
T cd02955 87 LTPDLKPF 94 (124)
T ss_pred ECCCCCEE
Confidence 67777
No 90
>PRK10996 thioredoxin 2; Provisional
Probab=98.35 E-value=3e-06 Score=58.01 Aligned_cols=58 Identities=22% Similarity=0.441 Sum_probs=43.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~i 111 (133)
++.|+++||+.|+.....|.++. -...+..+|...+ +.+.+.++..++|++++ +|+.+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-----~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-----RELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-----HHHHHhcCCCccCEEEEEECCEEE
Confidence 77899999999999888876642 2223677788665 35667789999999855 88755
No 91
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.35 E-value=5.1e-06 Score=55.14 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=28.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~ 84 (133)
|++|+.++||+|++|+++|++.|+.+ ..+|+..+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~--~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPF--EERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCce--EEEecCCC
Confidence 78999999999999999999999873 55555433
No 92
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.34 E-value=1.6e-06 Score=59.70 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=41.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE---CCeEe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV---NGEHI 111 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi---~G~~i 111 (133)
|+.|+++||+.|+.....|.++. ....++.+|+..+. ...+.+.++..++|++++ +|+.+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~---~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK---WLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc---cHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 66799999999999998887652 11225666665431 134556789999999854 47655
No 93
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.33 E-value=1.7e-06 Score=57.62 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=28.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~ 84 (133)
|++|+.++||+|++|+++|++.++. |..+|+..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~~~ 34 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIE--YQFIDIGED 34 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCc--eEEEecCCC
Confidence 5799999999999999999999987 456666544
No 94
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.33 E-value=8.5e-06 Score=49.43 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=51.5
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcC-CCcccEEEECCeEeeccHHHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVG-RRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g-~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
.+|+.+.||+|.+++-+|...++.+..+.+|.... .+++.+... ...+|.+..+|..+.....+.++.+
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~----~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNK----SELLLASNPVHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccC----CHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence 58999999999999999999998755555554321 234445555 4799999999988888777776643
No 95
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.31 E-value=3.3e-06 Score=54.96 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=41.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC----------CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNE----------QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGE 109 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~----------~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~ 109 (133)
++.|+++||++|++..+.++++.. ...+..+|...+ ..+.+.+|..++|++++ +|+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----SDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----HHHHHhCCCCcCCEEEEEeCCc
Confidence 678999999999999998865421 112567777665 35667789999999954 665
No 96
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.29 E-value=9.1e-06 Score=51.36 Aligned_cols=59 Identities=22% Similarity=0.454 Sum_probs=43.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEe
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~i 111 (133)
-++.|+++||+.|+...+.|+++. -...+..+|...+ +.+.+.+|..++|++++ +|+.+
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN-----PDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC-----HHHHHHcCCCcCCEEEEEeCCcEe
Confidence 377788999999999988887652 1223677787665 34556779999999866 77654
No 97
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.29 E-value=2.7e-06 Score=56.69 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=44.5
Q ss_pred hHHHHHHhhccCCc--EEEEEeCCChhHHHHHHHHHhcCC----CCeEEEEcCCCCHHHHHHHHHHHcCCC--cccEEEE
Q 032791 35 SVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIFADLNE----QPFVVELDLRDDGAQIQYILLDLVGRR--TVPQIFV 106 (133)
Q Consensus 35 ~~~~~~~~~~~~~~--Vviy~~~~Cp~C~~ak~~L~~~~~----~~~~~~id~~~~~~~~~~~l~~~~g~~--~vP~vfi 106 (133)
+..++++++..+++ ++.|+++||+.|+...+.+.+... ...++.+|+..+.+.. .+.++.. .+|++++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~----~~~~~~~g~~vPt~~f 82 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPK----DEEFSPDGGYIPRILF 82 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCch----hhhcccCCCccceEEE
Confidence 35566666655544 556899999999999988877421 1124556655442211 1233443 4999854
Q ss_pred ---CCeEee
Q 032791 107 ---NGEHIG 112 (133)
Q Consensus 107 ---~G~~ig 112 (133)
+|+.++
T Consensus 83 ~~~~Gk~~~ 91 (117)
T cd02959 83 LDPSGDVHP 91 (117)
T ss_pred ECCCCCCch
Confidence 666554
No 98
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.29 E-value=2.4e-06 Score=56.72 Aligned_cols=57 Identities=11% Similarity=0.104 Sum_probs=41.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC----CeEEEEcCCCCHHHHHHHHHHHcCCCcccEE--EECCe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTVPQI--FVNGE 109 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~----~~~~~id~~~~~~~~~~~l~~~~g~~~vP~v--fi~G~ 109 (133)
++.|+++||++|+.+++.++++... ..+..+|.+.+. +...+.++..++|++ |.+|+
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~----~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ----GKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh----HHHHHhcCCcccCEEEEEECCc
Confidence 7789999999999999998877421 225778877652 222346788999998 44765
No 99
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.28 E-value=4.2e-06 Score=62.11 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=46.3
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcC---CCCeEEEEcCC---CC-------------HH---------------------
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLN---EQPFVVELDLR---DD-------------GA--------------------- 86 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~---~~~~~~~id~~---~~-------------~~--------------------- 86 (133)
..|++|+.+.||||+++.+.+.++. ++.++..+.+. .. ..
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v 188 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDI 188 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchH
Confidence 3488999999999999999988863 33223222221 10 00
Q ss_pred HHHHHHHHHcCCCcccEEEE-CCeEeeccHHH
Q 032791 87 QIQYILLDLVGRRTVPQIFV-NGEHIGGADDL 117 (133)
Q Consensus 87 ~~~~~l~~~~g~~~vP~vfi-~G~~igG~~~l 117 (133)
+...++.+..|.+.+|++++ ||+.+.|+...
T Consensus 189 ~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~~ 220 (232)
T PRK10877 189 ADHYALGVQFGVQGTPAIVLSNGTLVPGYQGP 220 (232)
T ss_pred HHhHHHHHHcCCccccEEEEcCCeEeeCCCCH
Confidence 01114455568899999988 99999997433
No 100
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.27 E-value=4.3e-06 Score=61.10 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=45.0
Q ss_pred hccCCcEEEEEe---CCChhHHHHHHHHHhcCCCC---eEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEe
Q 032791 43 SIFSNKIVIFSK---SYCPYCLRAKRIFADLNEQP---FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (133)
Q Consensus 43 ~~~~~~Vviy~~---~~Cp~C~~ak~~L~~~~~~~---~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~i 111 (133)
+.+...+++|+. +|||.|+.+.+.++++...+ .+..++++.+. ...+.+.+|..++|++.+ ||+.+
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~---~~~l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE---DKEEAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc---cHHHHHHcCCCccCEEEEEeCCeee
Confidence 344555888988 99999999999998874221 12334444321 257777889999999966 65544
No 101
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.27 E-value=2.1e-06 Score=55.54 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=41.3
Q ss_pred HHHHhhccCCc-EEEEEeCCChhHHHHHHHHHhcCCC-------CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 38 AFVQNSIFSNK-IVIFSKSYCPYCLRAKRIFADLNEQ-------PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 38 ~~~~~~~~~~~-Vviy~~~~Cp~C~~ak~~L~~~~~~-------~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
+...+..+... ++.|+++|||.|++..+.|+++... ..+..+|.... ..+.+.++..++|++++
T Consensus 7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-----SSIASEFGVRGYPTIKL 78 (104)
T ss_pred hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-----HhHHhhcCCccccEEEE
Confidence 33444333333 6679999999999888887664311 11445565543 35566789999999954
No 102
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.23 E-value=1.2e-05 Score=48.49 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
+.||+|.+++.+|+..++.+ ..+++.... .+....+|++..+|..+.++..+.++.+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~--~~~~~~~~~---------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPY--EVVFSSNPW---------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCce--EEEecCCcc---------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 48999999999999999863 333433220 4457789999999999999988877654
No 103
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.23 E-value=5.5e-06 Score=53.34 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=41.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC----CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CC
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NG 108 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~----~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G 108 (133)
-++.|+++||+.|++..+.++++... ..+..+|...+ +.+.+.+|.+++|++++ +|
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-----ESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-----HHHHHHcCCCcccEEEEEcCC
Confidence 37779999999999998888765321 22567777654 35666779999999954 55
No 104
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.20 E-value=7.1e-06 Score=55.87 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=26.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEE
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVEL 79 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~i 79 (133)
|+||+.++|+.|++|+++|++.++.+.++++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di 32 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEe
Confidence 7899999999999999999999987444443
No 105
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.19 E-value=1.5e-05 Score=48.20 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=49.8
Q ss_pred EEEEeCCChhHHHHHHHHHh--cCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE-CCeEeeccHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFAD--LNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIGGADDLKAA 120 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~--~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~G~~igG~~~l~~~ 120 (133)
.+|+.+.||+|.+++-+|.. .++.+..+.+|.... .+++.+......+|.+.. ||..+.....+.++
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~----~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSD----DESLLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccC----ChHHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 68999999999999999999 777644555554322 234556678899999985 77888777766654
No 106
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.19 E-value=1.2e-05 Score=48.26 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=53.6
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAA 120 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~ 120 (133)
++|+.+.|+.|.+++.+|...++.+..+.+|.... ....+++.+.+....+|++..+|..+.....+.++
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKG-EQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccC-CcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 57888999999999999999998755666665432 11235666777889999999999888777666554
No 107
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.19 E-value=6e-06 Score=56.28 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=26.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~ 81 (133)
|+||+.++|+.|++|+++|++.++.+ ..+|+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~--~~~d~ 32 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSY--KEQNL 32 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEC
Confidence 78999999999999999999999874 44454
No 108
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.19 E-value=5.8e-06 Score=53.49 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=40.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC----CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNE----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
-++.|+++||++|++..+.++++.. ...+..+|...+. ...+.+.++..++|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~---~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK---NKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc---cHHHHHHcCCCcCCEEEE
Confidence 4788999999999999888877631 1225666766531 245666789999999965
No 109
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.19 E-value=5.9e-06 Score=54.15 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=26.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEE
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVEL 79 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~i 79 (133)
|++|+.|+|+.|++|+++|++.++.+.++++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di 31 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDY 31 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEec
Confidence 5799999999999999999999987444433
No 110
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.17 E-value=1.1e-05 Score=57.49 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=43.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEee
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~ig 112 (133)
|+-|+++|||.|+.+.+.|+++..+ ..++.+|.... .+...++..++|++++ +|+.++
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~------~l~~~f~v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT------GASDEFDTDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch------hhHHhCCCCCCCEEEEEECCEEEE
Confidence 5558889999999999988776422 12677777542 5667789999999854 998775
No 111
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.17 E-value=2.4e-05 Score=57.82 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=43.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC----CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEe
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNE----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~i 111 (133)
-++.|+++|||+|++..+.++++.. ...+..+|...+ ..+.+.++..++|++++ +|+.+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-----~~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-----LNLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-----HHHHHHcCCCcCCEEEEEECCEEE
Confidence 3788999999999999999877531 112456666554 45667789999999854 88765
No 112
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.16 E-value=1.9e-05 Score=50.47 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=51.6
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
..||||++++-.|.+.++.+.++.+|....+ +.+.+.+-...+|++..+|..+.....+.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p----~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKP----EDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCC----HHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 5799999999999999997666777765542 346667778899999999999988888877754
No 113
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.15 E-value=2.5e-05 Score=48.92 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=40.3
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcC--C----CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLN--E----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~--~----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
.-++.|+++||+.|+++.+.+.+.. . ...+..+|...+ ..+.+.+|.+.+|++++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-----NDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-----HHHHHhCCCCCCCEEEE
Confidence 3488899999999999999886642 1 222566666553 46667789999999965
No 114
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.14 E-value=1.6e-05 Score=50.75 Aligned_cols=61 Identities=18% Similarity=0.349 Sum_probs=41.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC------CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEe
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~------~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~i 111 (133)
-++.|+++|||.|++..+.+.++. ....+..+|...+. ...+.+.+|..++|++++ +|+.+
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE---HDALKEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc---cHHHHHhCCCccccEEEEEeCCCee
Confidence 378899999999999987765542 11125566766521 235566779999999854 66644
No 115
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.13 E-value=1.6e-06 Score=58.85 Aligned_cols=78 Identities=15% Similarity=0.390 Sum_probs=40.2
Q ss_pred hhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHHHHH--cCCCcccEEEE---
Q 032791 33 DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-EQPFVVELDLRDDGAQIQYILLDL--VGRRTVPQIFV--- 106 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~-~~~~~~~id~~~~~~~~~~~l~~~--~g~~~vP~vfi--- 106 (133)
+++..++++...+..++++++.+|||+|....+.|.++- ..|. +++.+..- ++..+.+..+ .|.+++|++++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~r-d~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILR-DENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-H-HHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEe-cCChhHHHHHHhCCCeecCEEEEEcC
Confidence 455667777887888999999999999999999987762 1222 33333211 1112222222 57899999966
Q ss_pred CCeEee
Q 032791 107 NGEHIG 112 (133)
Q Consensus 107 ~G~~ig 112 (133)
+|+.+|
T Consensus 107 ~~~~lg 112 (129)
T PF14595_consen 107 DGKELG 112 (129)
T ss_dssp T--EEE
T ss_pred CCCEeE
Confidence 345543
No 116
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.13 E-value=1.3e-05 Score=51.21 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=39.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
-++.|+++||+.|++..+.+.++. -...+..+|...+ ..+.+.+|..++|++++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-----QSLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-----HHHHHHCCCCccCEEEE
Confidence 377899999999999988886643 1223567777654 34566779999998854
No 117
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.12 E-value=1.3e-05 Score=45.13 Aligned_cols=58 Identities=29% Similarity=0.548 Sum_probs=40.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc---CCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL---NEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~---~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G 108 (133)
+++|+.++||+|.++...+++. .....+..+|........ .. ....+..++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALE-KE-LKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHh-hH-HHhCCCccccEEEEEe
Confidence 4789999999999999999953 222236777776653322 21 3456888999998755
No 118
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.10 E-value=5.2e-05 Score=46.02 Aligned_cols=70 Identities=7% Similarity=-0.138 Sum_probs=54.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
+++|+.+.|+.|.+++-+|...++.+..+.++. ++..+++...+...++|++..+|..+.....+..+..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~----~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTY----EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH----HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 578888999999999999999998754454443 1223456666778899999999998888877776653
No 119
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.10 E-value=3.7e-05 Score=46.82 Aligned_cols=73 Identities=10% Similarity=-0.009 Sum_probs=54.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
+.+|+.+.+|.|+++.-+|...++.+..+.+|.... +...+++.+.+....+|++..+|..+.....+..+..
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKG-EQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCC-CcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 368999999999999999999998755666665432 2223456667788999999988888877776666543
No 120
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.08 E-value=1.2e-05 Score=51.08 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=39.3
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcC----C--CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLN----E--QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~----~--~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
.-++.|+++||+.|++..+.|++.. . ...+..+|...+ ..+.+.++...+|++++
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-----KDLASRFGVSGFPTIKF 75 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-----HHHHHhCCCCcCCEEEE
Confidence 3388899999999999888776542 1 122566666554 45667789999999954
No 121
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.07 E-value=2.4e-05 Score=59.36 Aligned_cols=68 Identities=16% Similarity=0.350 Sum_probs=52.7
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHH
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAA 120 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~ 120 (133)
-++++|--.+||||-+++++|+-+++.+.++++|... +.++ +.+..+.||.+.+.|+.+....-|+.+
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~-----r~eI-k~SsykKVPil~~~Geqm~dSsvIIs~ 156 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL-----RQEI-KWSSYKKVPILLIRGEQMVDSSVIISL 156 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh-----hhhc-cccccccccEEEeccceechhHHHHHH
Confidence 3799999999999999999999999976677777643 2333 345788999999999877665544444
No 122
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.06 E-value=4.7e-05 Score=46.92 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=54.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEEC---CeEeeccHHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN---GEHIGGADDLKAAVL 122 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~---G~~igG~~~l~~~~~ 122 (133)
+.+|+.+. |+|++++-+|+..++.+..+.++.... ....+++.+.+....+|.+..+ |..+.....+.++..
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKG-EQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCC-cccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 57898886 999999999999999766666775432 2223556677788899999887 788887777766643
No 123
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.06 E-value=4.7e-05 Score=49.68 Aligned_cols=57 Identities=14% Similarity=0.425 Sum_probs=38.5
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcC----C-CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLN----E-QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~----~-~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
.-++.|+++|||+|++..+.+.++. - ...+..+|...+.. ....+.++...+|++++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~---~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQR---EFAKEELQLKSFPTILF 84 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccch---hhHHhhcCCCcCCEEEE
Confidence 3477899999999999999887653 1 12256667665311 22334578999999853
No 124
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.06 E-value=2e-05 Score=50.16 Aligned_cols=59 Identities=20% Similarity=0.398 Sum_probs=41.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC----C---CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEe
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLN----E---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~----~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~i 111 (133)
-++.|+++||+.|+...+.++++. . ...+..+|...+ ..+.+.++..++|++++ +|+.+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~ 86 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-----RELCSEFQVRGYPTLLLFKDGEKV 86 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-----hhhHhhcCCCcCCEEEEEeCCCee
Confidence 467799999999999888876552 1 122567776655 24556678999999854 66544
No 125
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.06 E-value=1.9e-05 Score=49.10 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=50.0
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEEC-CeEeeccHHHHHHHH
Q 032791 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGGADDLKAAVL 122 (133)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-G~~igG~~~l~~~~~ 122 (133)
++||+|.+++-+|...++.+..+.++.... ....+++ +..+...+|++..+ |..+.+...+.++..
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~-~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDI-PPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCc-ccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 679999999999999998765666665433 2223344 55678899999988 889988888877754
No 126
>PTZ00062 glutaredoxin; Provisional
Probab=98.04 E-value=1.5e-05 Score=58.12 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=39.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEeecc
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGA 114 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~igG~ 114 (133)
.|+.|+++|||.|+.+.+.|.++... ..+..+|.+ ++...+|++++ ||+.|+.+
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv~~~~g~~i~r~ 78 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFEFYQNSQLINSL 78 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEEEEECCEEEeee
Confidence 36667799999999999999887532 125666543 68999998843 88877543
No 127
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.03 E-value=2.9e-05 Score=53.55 Aligned_cols=72 Identities=11% Similarity=0.181 Sum_probs=47.5
Q ss_pred hhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCC----CeEEEEcCCCCHHHHHHHHHHHcCCCcc-cEE-EE
Q 032791 33 DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTV-PQI-FV 106 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~----~~~~~id~~~~~~~~~~~l~~~~g~~~v-P~v-fi 106 (133)
.++..+.+...-..--|+-|+++|||.|+...+.|+++..+ ..++.+|++.. +++...++.++. |++ |.
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~-----~dla~~y~I~~~~t~~~ff 85 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV-----PDFNTMYELYDPCTVMFFF 85 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC-----HHHHHHcCccCCCcEEEEE
Confidence 34455555433222225669999999999999999887522 22678899876 466777888855 555 33
Q ss_pred -CCe
Q 032791 107 -NGE 109 (133)
Q Consensus 107 -~G~ 109 (133)
+|+
T Consensus 86 k~g~ 89 (142)
T PLN00410 86 RNKH 89 (142)
T ss_pred ECCe
Confidence 665
No 128
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.03 E-value=1.4e-05 Score=48.32 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE-CCeEeeccHHHHHHHH
Q 032791 56 YCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIGGADDLKAAVL 122 (133)
Q Consensus 56 ~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~G~~igG~~~l~~~~~ 122 (133)
.||+|+++.-+|..+|+.+.+..++.........+++.+.++..+||.+.. +|+.+.....+.++..
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 499999999999999987655555332221111256677889999999998 8999998888877654
No 129
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.01 E-value=1.5e-05 Score=53.47 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=44.9
Q ss_pred hhHHHHHHhhccCCcEEEEEe-------CCChhHHHHHHHHHhcC----CCCeEEEEcCCCCHH--HHHHHHHHHcCCC-
Q 032791 34 HSVSAFVQNSIFSNKIVIFSK-------SYCPYCLRAKRIFADLN----EQPFVVELDLRDDGA--QIQYILLDLVGRR- 99 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~-------~~Cp~C~~ak~~L~~~~----~~~~~~~id~~~~~~--~~~~~l~~~~g~~- 99 (133)
++..+.+.+.....-++.|++ +|||.|+.+.+.|+++. ....++.+|+..... .....++..++..
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~ 89 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTT 89 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCccc
Confidence 334444444311223667888 89999999988876652 123367888765310 0124566667777
Q ss_pred cccEEEE
Q 032791 100 TVPQIFV 106 (133)
Q Consensus 100 ~vP~vfi 106 (133)
++|++++
T Consensus 90 ~iPT~~~ 96 (119)
T cd02952 90 GVPTLLR 96 (119)
T ss_pred CCCEEEE
Confidence 9999965
No 130
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.99 E-value=3.7e-05 Score=55.33 Aligned_cols=72 Identities=18% Similarity=0.377 Sum_probs=45.5
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc--CCCCeEEEEcCCC--CH------------------------------------
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADL--NEQPFVVELDLRD--DG------------------------------------ 85 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~--~~~~~~~~id~~~--~~------------------------------------ 85 (133)
...|++|+.+.||||+++.+.+.+. +++.+++.+.... +.
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~~ 157 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDNP 157 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCch
Confidence 3458899999999999999999852 2221222222211 10
Q ss_pred HHHHHHHHHHcCCCcccEEEE-CCeEeeccHHH
Q 032791 86 AQIQYILLDLVGRRTVPQIFV-NGEHIGGADDL 117 (133)
Q Consensus 86 ~~~~~~l~~~~g~~~vP~vfi-~G~~igG~~~l 117 (133)
-.....+.+..|..++|++++ ||+.+.|+...
T Consensus 158 i~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~~ 190 (197)
T cd03020 158 VAANLALGRQLGVNGTPTIVLADGRVVPGAPPA 190 (197)
T ss_pred HHHHHHHHHHcCCCcccEEEECCCeEecCCCCH
Confidence 001114444567899999988 59999997653
No 131
>PTZ00102 disulphide isomerase; Provisional
Probab=97.98 E-value=9.3e-05 Score=59.55 Aligned_cols=58 Identities=21% Similarity=0.379 Sum_probs=40.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-------CCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeE
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADL-------NEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEH 110 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~-------~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~ 110 (133)
-++.|+++||++|++..+.+.+. +.+..+..+|...+ ..+.+.++..++|++++ +|..
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~ 118 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-----MELAQEFGVRGYPTIKFFNKGNP 118 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-----HHHHHhcCCCcccEEEEEECCce
Confidence 47789999999999888766542 11122667777665 45667789999999954 5553
No 132
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.98 E-value=3.1e-05 Score=51.44 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=27.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcC
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~ 81 (133)
.|++|+.|.|+.|++|+++|+++++.+. .+|+
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~--~~d~ 32 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVE--VRDL 32 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcE--Eeeh
Confidence 3789999999999999999999998744 4454
No 133
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.97 E-value=7.9e-05 Score=45.40 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=47.6
Q ss_pred EEEEEeC-------CChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 49 IVIFSKS-------YCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 49 Vviy~~~-------~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
+++|..+ .||+|.+++.+|+..++.+..+.++. .+......+|++..+|+.+.+...+.++.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-----------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-----------AKRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-----------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 4667776 57999999999999998644333332 13456789999999999999888877765
Q ss_pred H
Q 032791 122 L 122 (133)
Q Consensus 122 ~ 122 (133)
.
T Consensus 71 ~ 71 (75)
T cd03080 71 E 71 (75)
T ss_pred H
Confidence 4
No 134
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.94 E-value=3.8e-05 Score=47.69 Aligned_cols=66 Identities=21% Similarity=0.408 Sum_probs=40.3
Q ss_pred hHHHHHHhhccCCc--EEEEEeCCChhHHHHHHHHHh-------cCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEE
Q 032791 35 SVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIFAD-------LNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIF 105 (133)
Q Consensus 35 ~~~~~~~~~~~~~~--Vviy~~~~Cp~C~~ak~~L~~-------~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf 105 (133)
+..+++.++.++++ ++.|+++||++|++..+.+-+ +..++..+.+|........ .+.. ..+|+++
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~~ 78 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTFF 78 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEEE
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEEE
Confidence 45556666555455 667889999999988877522 2223336777875543322 2222 3499986
Q ss_pred E
Q 032791 106 V 106 (133)
Q Consensus 106 i 106 (133)
+
T Consensus 79 ~ 79 (82)
T PF13899_consen 79 F 79 (82)
T ss_dssp E
T ss_pred E
Confidence 5
No 135
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.90 E-value=6.3e-05 Score=47.91 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=39.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC------CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~------~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
-++.|+++|||.|++..+.+.++. ....+..+|.... ...+.+.++..++|++++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA----NKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc----chhhHHhCCCCCcCEEEE
Confidence 477899999999999888876642 1122567777662 145566678999999965
No 136
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.84 E-value=0.00017 Score=52.28 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=55.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
.+++|+.+.||+|.+++-+|.+.|+.+..+.+|...- .+++.+.+....||++..+|..+-....|..+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~----~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNL----PQDLIDLNPYQSVPTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccC----CHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 4789999999999999999999999766666665321 245666777899999999998887766666654
No 137
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.84 E-value=4.4e-05 Score=55.19 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=41.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC---CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEee
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~ig 112 (133)
|+-|+++||+.|+.+.+.|+++..+ ..|+.+|.... ...++...+|++++ ||+.++
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~--------~~~~~i~~lPTlliyk~G~~v~ 166 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC--------IPNYPDKNLPTILVYRNGDIVK 166 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh--------HhhCCCCCCCEEEEEECCEEEE
Confidence 4558999999999999999887522 12677776421 35678999999955 887654
No 138
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.84 E-value=9.6e-05 Score=53.66 Aligned_cols=69 Identities=23% Similarity=0.390 Sum_probs=50.7
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEE-ECCeEeeccHHHHHHHHc
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIF-VNGEHIGGADDLKAAVLS 123 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf-i~G~~igG~~~l~~~~~~ 123 (133)
++|+.+.||+|++++-+|...|+.+. .+++..... ... .+.++..++|++. .||..+.+...|.++..+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e--~~~~~~~~~--~~~-~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVE--KHVLLNDDE--ETP-IRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeE--EEECCCCcc--hhH-HHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 36888999999999999999998643 344432211 122 3556778999997 788899998888887654
No 139
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.82 E-value=0.00044 Score=47.94 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=41.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----CC--------CCeEEEEcCCCCHHHHHH--------------------HHHHHc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL----NE--------QPFVVELDLRDDGAQIQY--------------------ILLDLV 96 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~----~~--------~~~~~~id~~~~~~~~~~--------------------~l~~~~ 96 (133)
++-|+++|||.|++..+.|.++ .. ...++-++...+.+..++ .+.+.+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y 108 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQF 108 (146)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHc
Confidence 5568899999999999998762 11 122555555444332222 445556
Q ss_pred CCCcccEEEE---CCeEee
Q 032791 97 GRRTVPQIFV---NGEHIG 112 (133)
Q Consensus 97 g~~~vP~vfi---~G~~ig 112 (133)
|..++|+.|+ +|+.+.
T Consensus 109 ~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 109 SVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred CCCCCCEEEEECCCCcEEe
Confidence 7788999976 677663
No 140
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.82 E-value=0.00017 Score=43.41 Aligned_cols=69 Identities=9% Similarity=0.030 Sum_probs=52.0
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
++|..+.|+.|.+++-+|...|+.+..+.+|.... . ...+.+.+....+|.+..+|..+.....+.++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~-~--~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW-P--ELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh-h--hhhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 67888999999999999999999755554444221 1 233556677889999999998888777776654
No 141
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.82 E-value=0.00011 Score=48.47 Aligned_cols=56 Identities=21% Similarity=0.295 Sum_probs=38.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC-------CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQ-------PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~-------~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
-++.|+++||+.|+...+.++++... ..+..+|...+ . ...+.+.++.+.+|++++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~-~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--E-NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--h-hHHHHHhCCCCCCCEEEE
Confidence 37779999999999998888765321 11345554332 1 245667789999999965
No 142
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.80 E-value=0.00024 Score=42.82 Aligned_cols=70 Identities=7% Similarity=-0.039 Sum_probs=53.1
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAA 120 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~ 120 (133)
.+|+.+.+|+|.+++-+|...++.+..+.++.... +...+++.+.+....+|.+..+|..+.....+.++
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~-~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFG-GLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccc-cccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence 57899999999999999999999766666664322 12235566777889999999999888776666554
No 143
>PRK10387 glutaredoxin 2; Provisional
Probab=97.80 E-value=0.00014 Score=52.26 Aligned_cols=70 Identities=20% Similarity=0.403 Sum_probs=51.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEE-EECCeEeeccHHHHHHHHc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQI-FVNGEHIGGADDLKAAVLS 123 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~v-fi~G~~igG~~~l~~~~~~ 123 (133)
+.+|+.+.||+|.+++-+|+..|+.+..+.++.... ... .+.++..+||++ ..+|..+.....|..+..+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~----~~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDE----ATP-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCch----hhH-HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 368999999999999999999999644444443222 112 345677899999 4688888888888777654
No 144
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.79 E-value=0.00022 Score=47.67 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=40.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CC---CCeEEEEcCCCCHHHH-------------------HHHHHHHcCCCcc
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADL----NE---QPFVVELDLRDDGAQI-------------------QYILLDLVGRRTV 101 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~----~~---~~~~~~id~~~~~~~~-------------------~~~l~~~~g~~~v 101 (133)
-++.|+.+|||.|++....|.++ .. ...++-++...+.+.. ...+.+.+|...+
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGI 100 (131)
T ss_pred EEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCC
Confidence 36678899999999887777543 11 1224444444332221 2456667899999
Q ss_pred cEEEE---CCeEe
Q 032791 102 PQIFV---NGEHI 111 (133)
Q Consensus 102 P~vfi---~G~~i 111 (133)
|++++ +|+.+
T Consensus 101 P~~~lid~~G~i~ 113 (131)
T cd03009 101 PTLIILDADGEVV 113 (131)
T ss_pred CEEEEECCCCCEE
Confidence 99975 66655
No 145
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.79 E-value=0.00016 Score=43.94 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=52.4
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEEC-CeEeeccHHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGGADDLKAAV 121 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-G~~igG~~~l~~~~ 121 (133)
++|+.+.||+|.+++-+|...++.+..+.+|.... ...+++.+.+....+|++..+ |..+.....+.++.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~--~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE--NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc--cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHH
Confidence 47889999999999999999998755666665421 223456677788999999984 77777666665554
No 146
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.77 E-value=0.00014 Score=55.16 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=43.5
Q ss_pred HHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCC--eEEEEcCCCCHH------HHHHHHHHHcCCCcccEEEE
Q 032791 38 AFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQP--FVVELDLRDDGA------QIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 38 ~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~--~~~~id~~~~~~------~~~~~l~~~~g~~~vP~vfi 106 (133)
..++++....-++.|+++|||+|++....|+++..++ .++.++++.... .....+.+.+|..++|++|+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 3445555556688899999999999998887654221 144444432110 00123556779999999975
No 147
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.75 E-value=0.00017 Score=48.34 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=37.9
Q ss_pred cEEEEEe-CCCh--hHH--HHHHH--------HHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEE--EECCeEee
Q 032791 48 KIVIFSK-SYCP--YCL--RAKRI--------FADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQI--FVNGEHIG 112 (133)
Q Consensus 48 ~Vviy~~-~~Cp--~C~--~ak~~--------L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~v--fi~G~~ig 112 (133)
.+++|.. .||+ +|+ ...+. |+..++ .+..+|++.+ ..|++.+|.+++|++ |-||+.+.
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v--~~~kVD~d~~-----~~La~~~~I~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGI--GFGLVDSKKD-----AKVAKKLGLDEEDSIYVFKDDEVIE 101 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCC--EEEEEeCCCC-----HHHHHHcCCccccEEEEEECCEEEE
Confidence 3555554 5564 598 33322 223233 3788899876 577788999999999 55998663
No 148
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.73 E-value=0.00026 Score=46.74 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=27.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR 82 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~ 82 (133)
|++|+.+.|+-|++|+++|++.++.+ ..+|+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~--~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEP--EIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCe--EEEecc
Confidence 57999999999999999999999873 455553
No 149
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.70 E-value=0.00036 Score=42.43 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=52.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEEC-CeEeeccHHHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGGADDLKAAVL 122 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-G~~igG~~~l~~~~~ 122 (133)
.+|+.+.|+ |.+++-+|...++.+.++.+|.... +...+++.+.+....+|++..+ |..+.....+.++..
T Consensus 2 ~Ly~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~ 73 (77)
T cd03057 2 KLYYSPGAC-SLAPHIALEELGLPFELVRVDLRTK-TQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLA 73 (77)
T ss_pred EEEeCCCCc-hHHHHHHHHHcCCCceEEEEecccC-ccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence 578888764 8899999999998765666666442 1223566678889999999887 788877777766643
No 150
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.69 E-value=0.00024 Score=59.11 Aligned_cols=76 Identities=14% Similarity=0.277 Sum_probs=49.7
Q ss_pred hhhHHHHHHhhccCCc--EEEEEeCCChhHHHHHHHH-------HhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccE
Q 032791 33 DHSVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIF-------ADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQ 103 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~~--Vviy~~~~Cp~C~~ak~~L-------~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~ 103 (133)
.++.++.+.+...+++ ++.|+++||+.|+..++.. ++++ +..++.+|.+.+.++ .+++.+.+|...+|+
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~-~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAE-DVALLKHYNVLGLPT 537 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChh-hHHHHHHcCCCCCCE
Confidence 3455666666554444 5569999999999876642 2222 233677888765333 356777789999999
Q ss_pred EEE---CCeE
Q 032791 104 IFV---NGEH 110 (133)
Q Consensus 104 vfi---~G~~ 110 (133)
+++ ||+.
T Consensus 538 ~~~~~~~G~~ 547 (571)
T PRK00293 538 ILFFDAQGQE 547 (571)
T ss_pred EEEECCCCCC
Confidence 954 4654
No 151
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.69 E-value=0.00022 Score=52.37 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=47.8
Q ss_pred hhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhc----CCCCeEEEEcCCCC----HHHHHHHHHHHcCCCcccEEE
Q 032791 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRDD----GAQIQYILLDLVGRRTVPQIF 105 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~----~~~~~~~~id~~~~----~~~~~~~l~~~~g~~~vP~vf 105 (133)
..-...++++....-+++|++++||+|+.....|+.+ |+....+.+|-... ....-..+.+..|...+|.+|
T Consensus 109 ~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 109 QKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred HHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 3344566677777889999999999999998888665 44423344441100 000013455667999999998
Q ss_pred E
Q 032791 106 V 106 (133)
Q Consensus 106 i 106 (133)
+
T Consensus 189 L 189 (215)
T PF13728_consen 189 L 189 (215)
T ss_pred E
Confidence 6
No 152
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.67 E-value=0.00069 Score=45.82 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=32.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcC-CCCHHHHHHHH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL-RDDGAQIQYIL 92 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~-~~~~~~~~~~l 92 (133)
.+++|+.|.|.-|++|+++|++.|+.+.++++-. ..+.+++...+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l 47 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYF 47 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHH
Confidence 4789999999999999999999999755444322 23334444433
No 153
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00068 Score=47.43 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=48.3
Q ss_pred HHHHHHhhccCCc--EEEEEeCCChhHHHHHHHHHh------cCCC-CeEEEEcCCCCH-----------HHHHHHHHHH
Q 032791 36 VSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIFAD------LNEQ-PFVVELDLRDDG-----------AQIQYILLDL 95 (133)
Q Consensus 36 ~~~~~~~~~~~~~--Vviy~~~~Cp~C~~ak~~L~~------~~~~-~~~~~id~~~~~-----------~~~~~~l~~~ 95 (133)
+.+..+.+....+ ++||.+++|+||.+.+.-+.. .-.. ...+++++..+. ..-.++|++.
T Consensus 31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k 110 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK 110 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence 4455555554444 889999999999988776532 2111 114455543221 1124689999
Q ss_pred cCCCcccEEEE---CCeEee
Q 032791 96 VGRRTVPQIFV---NGEHIG 112 (133)
Q Consensus 96 ~g~~~vP~vfi---~G~~ig 112 (133)
++.++.|+++. +|+-|+
T Consensus 111 f~vrstPtfvFfdk~Gk~Il 130 (182)
T COG2143 111 FAVRSTPTFVFFDKTGKTIL 130 (182)
T ss_pred hccccCceEEEEcCCCCEEE
Confidence 99999999965 445554
No 154
>PRK15113 glutathione S-transferase; Provisional
Probab=97.66 E-value=0.00047 Score=50.01 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=56.2
Q ss_pred cEEEEEeC--CChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 48 KIVIFSKS--YCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 48 ~Vviy~~~--~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
.+++|+.+ .||+|+++.-+|.+.|+.+..+.+|.... +...+++.+.+-...||++..||..+-....|..+.
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~-~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAG-EHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCc-cccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 47889976 69999999999999999766677776442 222356677778899999999998887666666654
No 155
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00026 Score=47.32 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=27.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEE
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVEL 79 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~i 79 (133)
.|++|+.|.|.-|++|++.|+++|+.|.++++
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y 33 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDY 33 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 38999999999999999999999998654444
No 156
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.65 E-value=0.00037 Score=49.73 Aligned_cols=59 Identities=19% Similarity=0.391 Sum_probs=38.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC-CCeEEEEcCCCCHHHHHHHHHH------------------HcCCCcccEE-EEC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNE-QPFVVELDLRDDGAQIQYILLD------------------LVGRRTVPQI-FVN 107 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~-~~~~~~id~~~~~~~~~~~l~~------------------~~g~~~vP~v-fi~ 107 (133)
++.|+.+|||.|++..+.|.++.. ...++-++..++.+...+.+++ .+|...+|+. +||
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid 150 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLID 150 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEEC
Confidence 667999999999998888877642 1225666655544444443332 3467789955 454
No 157
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.63 E-value=0.00021 Score=47.43 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=26.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~ 81 (133)
|++|+.++|+-|++|+.+|++.++.+ ..+|+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~--~~~di 31 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEP--EVVKY 31 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCe--EEEec
Confidence 57999999999999999999999874 45554
No 158
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00019 Score=53.71 Aligned_cols=59 Identities=29% Similarity=0.464 Sum_probs=45.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCe---EEEEcCCCCHHHHHHHHHHHcCCCcccEE--EECCeEe
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPF---VVELDLRDDGAQIQYILLDLVGRRTVPQI--FVNGEHI 111 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~---~~~id~~~~~~~~~~~l~~~~g~~~vP~v--fi~G~~i 111 (133)
-+|=|+.+||..|+++.++++.+.-+|- |.++|++.. +..+.-+|....|++ |.||.-|
T Consensus 24 v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c-----~~taa~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 24 VVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDEC-----RGTAATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHh-----hchhhhcCcccCceEEEEecCeEe
Confidence 3666999999999999999999863332 788888654 233445799999998 6799765
No 159
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.59 E-value=0.00026 Score=44.95 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=36.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC------CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNE------QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~------~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
-++.|+++||++|+...+.+++... ...+..+|.... .+....+..++|++++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~------~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN------DVPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch------hhhhhccCCCCCEEEE
Confidence 3677999999999999998876641 112456666543 2334456789999865
No 160
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.59 E-value=0.00069 Score=45.53 Aligned_cols=64 Identities=17% Similarity=0.340 Sum_probs=40.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----CC---CCeEEEEcCCCCHHH--------------------HHHHHHHHcCCCcc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL----NE---QPFVVELDLRDDGAQ--------------------IQYILLDLVGRRTV 101 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~----~~---~~~~~~id~~~~~~~--------------------~~~~l~~~~g~~~v 101 (133)
++.|+.+|||.|++..+.|+++ .- ...++-++...+.+. ....+.+.+|..++
T Consensus 21 ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~i 100 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGI 100 (132)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCCC
Confidence 5678899999999887777543 21 122444444443221 23456666788999
Q ss_pred cEEE-E--CCeEee
Q 032791 102 PQIF-V--NGEHIG 112 (133)
Q Consensus 102 P~vf-i--~G~~ig 112 (133)
|+++ | +|+.+.
T Consensus 101 Pt~~lid~~G~iv~ 114 (132)
T cd02964 101 PTLVVLKPDGDVVT 114 (132)
T ss_pred CEEEEECCCCCEEc
Confidence 9997 4 466553
No 161
>PRK10026 arsenate reductase; Provisional
Probab=97.59 E-value=0.00036 Score=48.12 Aligned_cols=47 Identities=9% Similarity=0.224 Sum_probs=33.7
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcC-CCCHHHHHHHHH
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL-RDDGAQIQYILL 93 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~-~~~~~~~~~~l~ 93 (133)
..+++|+.+.|.-|++|+++|+++++.+.++++-. ..+.++++..++
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~ 49 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA 49 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence 46899999999999999999999998754443322 224445544444
No 162
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.00043 Score=44.60 Aligned_cols=82 Identities=22% Similarity=0.215 Sum_probs=58.6
Q ss_pred cEEEEEeCCChhH------HHHHHHHHhcCCCCeEEEEcCCCCHH-------HHHHHHHHHcCCCcccEEEECCeEeecc
Q 032791 48 KIVIFSKSYCPYC------LRAKRIFADLNEQPFVVELDLRDDGA-------QIQYILLDLVGRRTVPQIFVNGEHIGGA 114 (133)
Q Consensus 48 ~Vviy~~~~Cp~C------~~ak~~L~~~~~~~~~~~id~~~~~~-------~~~~~l~~~~g~~~vP~vfi~G~~igG~ 114 (133)
.|.+|+++..+.- ..+..+|+...+. +.++|+..... .+.++.+-..|...-|+||-++++.|++
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~--fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdy 80 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIG--FKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDY 80 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCC--cceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccH
Confidence 4667777554442 3566778877664 47788765421 1122344456888999999999999999
Q ss_pred HHHHHHHHcChHHHhhc
Q 032791 115 DDLKAAVLSGQLQQLLG 131 (133)
Q Consensus 115 ~~l~~~~~~g~L~~~L~ 131 (133)
+.+.+..+++.|.+.|+
T Consensus 81 e~F~ea~E~ntl~eFL~ 97 (108)
T KOG4023|consen 81 ELFFEAVEQNTLQEFLG 97 (108)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999989999999884
No 163
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.56 E-value=0.00018 Score=50.20 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=23.4
Q ss_pred ccCCcEEEEEeCCChhHHHHHHHHHhcC
Q 032791 44 IFSNKIVIFSKSYCPYCLRAKRIFADLN 71 (133)
Q Consensus 44 ~~~~~Vviy~~~~Cp~C~~ak~~L~~~~ 71 (133)
.....++.|+++|||.|++..+.|+++.
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~ 76 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFS 76 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHH
Confidence 3456699999999999999999987653
No 164
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.54 E-value=0.0005 Score=45.66 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=39.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCC--eEEEEcCCCCHHHHHH------------------HHHHHcCCCccc-EEEE
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQP--FVVELDLRDDGAQIQY------------------ILLDLVGRRTVP-QIFV 106 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~--~~~~id~~~~~~~~~~------------------~l~~~~g~~~vP-~vfi 106 (133)
-|+.|+.+|||.|.+..+.|.++.... .++.++...+.+..++ .+.+.+|...+| ++++
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~l 107 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLI 107 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEE
Confidence 477899999999999888887764221 2455554333333332 233445777889 5555
Q ss_pred --CCeEe
Q 032791 107 --NGEHI 111 (133)
Q Consensus 107 --~G~~i 111 (133)
+|+.+
T Consensus 108 d~~G~v~ 114 (127)
T cd03010 108 DGDGIIR 114 (127)
T ss_pred CCCceEE
Confidence 45533
No 165
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.53 E-value=0.0015 Score=41.10 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=27.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----C--CCCeEEEEcCCCCHHHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL----N--EQPFVVELDLRDDGAQIQYILL 93 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~----~--~~~~~~~id~~~~~~~~~~~l~ 93 (133)
++.|+++||+.|.+..+.|.++ + ....++.+..+.+..+.++.++
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~ 55 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLK 55 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHH
Confidence 6789999999999888887664 3 2223566665555444444433
No 166
>PLN02309 5'-adenylylsulfate reductase
Probab=97.49 E-value=0.0004 Score=56.34 Aligned_cols=56 Identities=18% Similarity=0.412 Sum_probs=38.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCC-----CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQ-----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~-----~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
-++.|++|||++|+...+.++++... ..+..+|...+.. +...+.++..++|++++
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---EFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---HHHHhhCCCceeeEEEE
Confidence 37889999999999999998776311 2256777762211 22233578999999954
No 167
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.48 E-value=0.00032 Score=50.26 Aligned_cols=63 Identities=24% Similarity=0.414 Sum_probs=37.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc----CCCCeEEEEcCCCC------HHHHHHHHHHHcCC--CcccEEEE---CCe
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRDD------GAQIQYILLDLVGR--RTVPQIFV---NGE 109 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~----~~~~~~~~id~~~~------~~~~~~~l~~~~g~--~~vP~vfi---~G~ 109 (133)
.+++.|+.+|||+|++..+.|+++ ++...-+.+|...+ -+.-...+...+|. ..+|+.|+ +|+
T Consensus 71 ~~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 71 WKVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred ceEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 349999999999999987666554 43322233332210 00001334556674 69999986 664
No 168
>PRK10853 putative reductase; Provisional
Probab=97.48 E-value=0.00044 Score=46.24 Aligned_cols=31 Identities=10% Similarity=0.191 Sum_probs=26.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEE
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVEL 79 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~i 79 (133)
+++|+.+.|..|++|+++|+++++.+.++++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 7899999999999999999999987544433
No 169
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.47 E-value=0.00099 Score=40.11 Aligned_cols=71 Identities=11% Similarity=0.051 Sum_probs=52.0
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
.+|+.+. +.|.+++-+|...++.+..+.+|.... ....+++.+.+....+|.+..+|..+.....+..+..
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPG-EQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCC-ccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 4677665 679999999999998755666665321 1113456667788899999999998988887777653
No 170
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.44 E-value=0.001 Score=49.53 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHc
Q 032791 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLS 123 (133)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~ 123 (133)
..||+|++++-.|...|+.+.++.+|...- .+++.+.+....+|++..+|..+.....|.++..+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~----~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK----PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEE 81 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCC----CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHH
Confidence 579999999999999999877788887643 24566777788999999999999988888877653
No 171
>PLN02473 glutathione S-transferase
Probab=97.43 E-value=0.00098 Score=48.09 Aligned_cols=73 Identities=14% Similarity=-0.001 Sum_probs=55.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
+.+|+.+.||+|.+++-+|.++++.+.++.+|.... +...++..+.+....+|++..+|..|.....+.++..
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~ 75 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKL-EQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYA 75 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCccc-ccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHH
Confidence 578999999999999999999999766666676432 1112344456778899999999988888777776653
No 172
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.41 E-value=0.0005 Score=55.85 Aligned_cols=58 Identities=17% Similarity=0.399 Sum_probs=40.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC-----CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ-----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGE 109 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~-----~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~ 109 (133)
++.|+++|||+|+...+.|+++... ..+..+|++.+.. +.....++..++|++++ +|.
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~---~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK---EFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc---HHHHHHcCCCccceEEEEECCC
Confidence 7779999999999999998776321 1256677765411 23345678999999943 653
No 173
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.38 E-value=0.0024 Score=44.46 Aligned_cols=65 Identities=15% Similarity=0.413 Sum_probs=40.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcC----CC-CeEEEEcCCCCHHHH-----------------HHHHHHHcCCCcccEE
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLN----EQ-PFVVELDLRDDGAQI-----------------QYILLDLVGRRTVPQI 104 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~----~~-~~~~~id~~~~~~~~-----------------~~~l~~~~g~~~vP~v 104 (133)
.-++.|+.+|||.|++..+.|.++. -. ..++.++...+.+.. ...+.+.+|...+|.+
T Consensus 63 ~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 142 (173)
T PRK03147 63 GVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTT 142 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeE
Confidence 3467889999999998766664432 11 124555554443322 1355566788899987
Q ss_pred E-E--CCeEe
Q 032791 105 F-V--NGEHI 111 (133)
Q Consensus 105 f-i--~G~~i 111 (133)
| + +|+.+
T Consensus 143 ~lid~~g~i~ 152 (173)
T PRK03147 143 FLIDKDGKVV 152 (173)
T ss_pred EEECCCCcEE
Confidence 6 4 47655
No 174
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.37 E-value=0.00099 Score=53.05 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=40.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-------CCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeE
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL-------NEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEH 110 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~-------~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~ 110 (133)
++.|+++||++|++..+.+.+. +.+..+..+|...+ .++.+.+|..++|++++ +|+.
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-----KDLAQKYGVSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-----HHHHHhCCCccccEEEEEeCCcc
Confidence 6789999999999988776543 11123677777665 45667789999999844 6664
No 175
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.36 E-value=0.0018 Score=43.22 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=42.9
Q ss_pred EEEEEe--CCCh---hHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCC--cccEE--EECCe
Q 032791 49 IVIFSK--SYCP---YCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRR--TVPQI--FVNGE 109 (133)
Q Consensus 49 Vviy~~--~~Cp---~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~--~vP~v--fi~G~ 109 (133)
+|.|.. |||. +|.+..+-+.+..-...+-.+|....++.....|.+.+|.. .+|+| |.+|.
T Consensus 22 lV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~ 91 (116)
T cd03007 22 LVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGD 91 (116)
T ss_pred EEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCC
Confidence 678999 9999 99988877766442222567777543232346788999998 99998 55773
No 176
>PLN02378 glutathione S-transferase DHAR1
Probab=97.35 E-value=0.0013 Score=47.74 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=50.2
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
..||+|+++.-+|+..|+.+..+.+|...- .+++.+.+....||++..+|..+.....|..+..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~----~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK----PQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC----CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 459999999999999999766778887543 1345667788999999999988877666666653
No 177
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.33 E-value=0.0023 Score=38.71 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=49.2
Q ss_pred eCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHH
Q 032791 54 KSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAA 120 (133)
Q Consensus 54 ~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~ 120 (133)
...||+|++++-+|...|+.+..+.++.... . ..+++.+.+....+|.+..+|..+.....+.++
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~-~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-D-TRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-c-ccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 3679999999999999999755555665432 1 135667777889999999999888877666554
No 178
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.31 E-value=0.0016 Score=45.92 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=38.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC-CeEEEEcCCCCHHHHHHH------------------HHHHcCCCcccE-EEE--
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ-PFVVELDLRDDGAQIQYI------------------LLDLVGRRTVPQ-IFV-- 106 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~-~~~~~id~~~~~~~~~~~------------------l~~~~g~~~vP~-vfi-- 106 (133)
++.|+.+|||.|++..+.++++... ..++-++...+.++..+. +.+.++...+|+ ++|
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~ 146 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDG 146 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcC
Confidence 6678899999999988888776322 225556654332332222 233446678995 556
Q ss_pred CCeEe
Q 032791 107 NGEHI 111 (133)
Q Consensus 107 ~G~~i 111 (133)
+|+.+
T Consensus 147 ~G~i~ 151 (173)
T TIGR00385 147 NGVIL 151 (173)
T ss_pred CceEE
Confidence 46633
No 179
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.29 E-value=0.00052 Score=43.72 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=40.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCC----CCeEEEEcCCCCHHHHHHHHHHHcCCC--cccEEEE
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLNE----QPFVVELDLRDDGAQIQYILLDLVGRR--TVPQIFV 106 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~~----~~~~~~id~~~~~~~~~~~l~~~~g~~--~vP~vfi 106 (133)
.-++.|..+||+.|...++.|+++.. +..+..+|.... ..+.+.+|.. ++|++.+
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~-----~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF-----GRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh-----HHHHHHcCCChhhCCEEEE
Confidence 34777889999999999999987642 122677777553 3455667887 9999965
No 180
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.26 E-value=0.0021 Score=43.44 Aligned_cols=25 Identities=28% Similarity=0.475 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
+..|++|+.++||+|.+..+.+.++
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~~ 30 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEKL 30 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHHH
Confidence 4568899999999999888877663
No 181
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.26 E-value=0.0016 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=18.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHh
Q 032791 48 KIVIFSKSYCPYCLRAKRIFAD 69 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~ 69 (133)
.|++|+.+.||||+++.+.+..
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHH
Confidence 4889999999999999777654
No 182
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.24 E-value=0.0023 Score=41.96 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=46.3
Q ss_pred hHHHHHHhhccCCc--EEEEEeCCChhHHHHHH-HHHhc------CCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEE
Q 032791 35 SVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKR-IFADL------NEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIF 105 (133)
Q Consensus 35 ~~~~~~~~~~~~~~--Vviy~~~~Cp~C~~ak~-~L~~~------~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf 105 (133)
+..++++++.++.+ ++.++.+||++|+...+ .|..- +-.+....+|.... + ...+...++...+|++.
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e--~~~~~~~~~~~~~P~~~ 81 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-E--GQRFLQSYKVDKYPHIA 81 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-c--HHHHHHHhCccCCCeEE
Confidence 45666777766666 55577799999998754 34322 11222455666542 2 24677778999999994
Q ss_pred -E---CCeEe
Q 032791 106 -V---NGEHI 111 (133)
Q Consensus 106 -i---~G~~i 111 (133)
+ +|+.+
T Consensus 82 ~i~~~~g~~l 91 (114)
T cd02958 82 IIDPRTGEVL 91 (114)
T ss_pred EEeCccCcEe
Confidence 4 46544
No 183
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.22 E-value=0.0005 Score=52.96 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=49.3
Q ss_pred chhhHHHHHHhhccCC-cEEEEEeCCChhHHHHHHHHHhcCCCCe----EEEEcCCCCHHHHHHHHHHHcCCCcccEE-E
Q 032791 32 ADHSVSAFVQNSIFSN-KIVIFSKSYCPYCLRAKRIFADLNEQPF----VVELDLRDDGAQIQYILLDLVGRRTVPQI-F 105 (133)
Q Consensus 32 ~~~~~~~~~~~~~~~~-~Vviy~~~~Cp~C~~ak~~L~~~~~~~~----~~~id~~~~~~~~~~~l~~~~g~~~vP~v-f 105 (133)
.-++..++.++..... =.+-|+.|||.+|++..+++++.|-+-. =+.+...+. .....++...|.+..|+| |
T Consensus 29 ~VeDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDa--T~f~aiAnefgiqGYPTIk~ 106 (468)
T KOG4277|consen 29 AVEDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDA--TRFPAIANEFGIQGYPTIKF 106 (468)
T ss_pred hhhhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccc--ccchhhHhhhccCCCceEEE
Confidence 4455666666655333 2778999999999999999998874311 022222111 113566777899999999 4
Q ss_pred ECCeEe
Q 032791 106 VNGEHI 111 (133)
Q Consensus 106 i~G~~i 111 (133)
..|.+.
T Consensus 107 ~kgd~a 112 (468)
T KOG4277|consen 107 FKGDHA 112 (468)
T ss_pred ecCCee
Confidence 454443
No 184
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0031 Score=49.88 Aligned_cols=99 Identities=19% Similarity=0.302 Sum_probs=66.2
Q ss_pred HhhhcCCCCCcccchhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHHHHHcC
Q 032791 19 FFLLLGNAPTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-EQPFVVELDLRDDGAQIQYILLDLVG 97 (133)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~-~~~~~~~id~~~~~~~~~~~l~~~~g 97 (133)
++.....++ ...++.-+.++.+-....+.-|.+-+|..|-.+.+.|.-+. ++|.+...-+ ++.-.+++...+ +
T Consensus 93 Llqv~G~pp---k~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~I--dGa~Fq~Evear-~ 166 (520)
T COG3634 93 LLQVGGHPP---KEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAI--DGALFQDEVEAR-N 166 (520)
T ss_pred HHHhcCCCC---chhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEe--cchhhHhHHHhc-c
Confidence 555555554 45677888999988888899999988888877777776654 2344332222 223445555443 7
Q ss_pred CCcccEEEECCeEeec----cHHHHHHHHc
Q 032791 98 RRTVPQIFVNGEHIGG----ADDLKAAVLS 123 (133)
Q Consensus 98 ~~~vP~vfi~G~~igG----~~~l~~~~~~ 123 (133)
..+||+||.||+..|. .+++.+....
T Consensus 167 IMaVPtvflnGe~fg~GRmtleeilaki~~ 196 (520)
T COG3634 167 IMAVPTVFLNGEEFGQGRMTLEEILAKIDT 196 (520)
T ss_pred ceecceEEEcchhhcccceeHHHHHHHhcC
Confidence 8899999999998874 4555554443
No 185
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.16 E-value=0.0029 Score=47.91 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=56.1
Q ss_pred hhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeec
Q 032791 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGG 113 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG 113 (133)
...+-.++... ...+. ...||+|+++.-+|.+.++.+.++.+|.... .+++.+.+-...+|++..+|..+..
T Consensus 54 ~~~~~~~~~~~-~~~~~---~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~----~~~fl~iNP~GkVPvL~~d~~~L~E 125 (265)
T PLN02817 54 SPLEVCVKASL-TVPNK---LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNK----PEWFLKISPEGKVPVVKLDEKWVAD 125 (265)
T ss_pred ccHHHHHhccc-CCCCc---CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcC----CHHHHhhCCCCCCCEEEECCEEEec
Confidence 33555555544 22233 2459999999999999999766667776543 2345566778899999999988877
Q ss_pred cHHHHHHHH
Q 032791 114 ADDLKAAVL 122 (133)
Q Consensus 114 ~~~l~~~~~ 122 (133)
...|.++..
T Consensus 126 S~aI~~YL~ 134 (265)
T PLN02817 126 SDVITQALE 134 (265)
T ss_pred HHHHHHHHH
Confidence 777766653
No 186
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.16 E-value=0.0022 Score=42.05 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=37.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCC-HHHHH-----------------HHHHHHcCCCcccEEEE
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD-GAQIQ-----------------YILLDLVGRRTVPQIFV 106 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~-~~~~~-----------------~~l~~~~g~~~vP~vfi 106 (133)
..-++.|+.+|||.|+...+.|..+.....++-+....+ .+.+. ..+.+.++..++|++++
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~v 99 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIVI 99 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEEE
Confidence 345778999999999999888876543222233322211 12111 24555678888999865
No 187
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.15 E-value=0.0038 Score=47.12 Aligned_cols=73 Identities=10% Similarity=0.116 Sum_probs=47.8
Q ss_pred hhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhc----CCCCeEEEEcCCCCH----HHHHHHHHHHcCCCcccEEE
Q 032791 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRDDG----AQIQYILLDLVGRRTVPQIF 105 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~----~~~~~~~~id~~~~~----~~~~~~l~~~~g~~~vP~vf 105 (133)
+.-.+.++++.....+++|.++.||+|++....|+.. |+....+.+|-.... ...-..+.+..|...+|.+|
T Consensus 139 ~~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~ 218 (256)
T TIGR02739 139 EQKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALY 218 (256)
T ss_pred HHHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEE
Confidence 4445677777788889999999999999988888554 554223334422110 00012345566889999998
Q ss_pred E
Q 032791 106 V 106 (133)
Q Consensus 106 i 106 (133)
+
T Consensus 219 L 219 (256)
T TIGR02739 219 L 219 (256)
T ss_pred E
Confidence 6
No 188
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.15 E-value=0.0031 Score=39.87 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=28.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCC-----CeEEEEcCCCC-HHHHHHH
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQ-----PFVVELDLRDD-GAQIQYI 91 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~~~-----~~~~~id~~~~-~~~~~~~ 91 (133)
..-++.|+.+|||.|.+....|.++... ..++-++...+ .+.+++.
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~ 71 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAF 71 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHH
Confidence 3447788999999999777766555311 12555566553 4444433
No 189
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=97.14 E-value=0.0013 Score=47.23 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=52.9
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
+|+...||+|++++-+|...++.+..+.++.....+...+++.+.+....+|++..||..+.....|..+..
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~ 73 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLE 73 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHH
Confidence 688889999999999999999875555555422111112456677788899999999988887777766543
No 190
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0015 Score=53.32 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=45.1
Q ss_pred HHHHhhccCCc--EEEEEeCCChhHHHHH-------HHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEE--EE
Q 032791 38 AFVQNSIFSNK--IVIFSKSYCPYCLRAK-------RIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQI--FV 106 (133)
Q Consensus 38 ~~~~~~~~~~~--Vviy~~~~Cp~C~~ak-------~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~v--fi 106 (133)
+.+.+.+..+. .|.|++|||.+|++.. ..|.+.+-....-.+|-..+ ..++..++.+.+|++ |.
T Consensus 33 dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-----~~~~~~y~v~gyPTlkiFr 107 (493)
T KOG0190|consen 33 DNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-----SDLASKYEVRGYPTLKIFR 107 (493)
T ss_pred ccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-----hhhHhhhcCCCCCeEEEEe
Confidence 33455555555 4679999999998544 44444432212456666554 577788899999999 55
Q ss_pred CCeE
Q 032791 107 NGEH 110 (133)
Q Consensus 107 ~G~~ 110 (133)
||+.
T Consensus 108 nG~~ 111 (493)
T KOG0190|consen 108 NGRS 111 (493)
T ss_pred cCCc
Confidence 8874
No 191
>smart00594 UAS UAS domain.
Probab=97.10 E-value=0.0046 Score=41.22 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=45.4
Q ss_pred hhhHHHHHHhhccCCc--EEEEEeCCChhHHHHHHH-HHhc------CCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccE
Q 032791 33 DHSVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRI-FADL------NEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQ 103 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~~--Vviy~~~~Cp~C~~ak~~-L~~~------~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~ 103 (133)
..+..++++++.++.| ++.+..+||++|+...+- |..- .-.+.+..+|+..... ..+...++..++|+
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg---~~l~~~~~~~~~P~ 89 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG---QRVSQFYKLDSFPY 89 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH---HHHHHhcCcCCCCE
Confidence 4456777777776654 666777999999875553 3221 1122244567665422 46777889999999
Q ss_pred EEE
Q 032791 104 IFV 106 (133)
Q Consensus 104 vfi 106 (133)
+.+
T Consensus 90 ~~~ 92 (122)
T smart00594 90 VAI 92 (122)
T ss_pred EEE
Confidence 954
No 192
>PTZ00102 disulphide isomerase; Provisional
Probab=97.09 E-value=0.00067 Score=54.60 Aligned_cols=53 Identities=15% Similarity=0.369 Sum_probs=37.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC------CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQ------PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~------~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
++.|+++||++|++..+.|+++... ..+..+|...+ +...+..+.+++|++++
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-----~~~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-----ETPLEEFSWSAFPTILF 437 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-----ccchhcCCCcccCeEEE
Confidence 6779999999999999998775311 11556676554 23344568889999954
No 193
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.09 E-value=0.0012 Score=42.75 Aligned_cols=23 Identities=17% Similarity=0.608 Sum_probs=19.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
-++.|+.+|||.|++....++++
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~~ 46 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRSI 46 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHHH
Confidence 37779999999999888888765
No 194
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.09 E-value=0.0027 Score=39.16 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=19.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
|++|+.+.||+|..+.+.+++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 5789999999999999999886
No 195
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.03 E-value=0.00073 Score=50.72 Aligned_cols=70 Identities=9% Similarity=0.143 Sum_probs=45.9
Q ss_pred hHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhc----CCCCeEEEEcCCC--CHH----HHHHHHHHHcCCCcccEE
Q 032791 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRD--DGA----QIQYILLDLVGRRTVPQI 104 (133)
Q Consensus 35 ~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~----~~~~~~~~id~~~--~~~----~~~~~l~~~~g~~~vP~v 104 (133)
.-.+.++++.....++.|+++.||+|++.-..|+.. |+. ++.+.++. .+. ..-....+..|...+|.+
T Consensus 133 ~~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~--v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl 210 (248)
T PRK13703 133 QQRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLS--VIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPAL 210 (248)
T ss_pred HHHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCe--EEEEecCCCCCCCCCCCccChhHHHhcCCcccceE
Confidence 344567777788999999999999999988888665 443 33333321 100 001123356788999999
Q ss_pred EE
Q 032791 105 FV 106 (133)
Q Consensus 105 fi 106 (133)
|+
T Consensus 211 ~L 212 (248)
T PRK13703 211 ML 212 (248)
T ss_pred EE
Confidence 86
No 196
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.02 E-value=0.0039 Score=41.77 Aligned_cols=72 Identities=17% Similarity=0.351 Sum_probs=35.8
Q ss_pred hhHHHHHHhhccC-Cc-EEEEEe-------CCChhHHHHHHHHHhc----CCCCeEEEEcCCCCHHHHH---HHHHH--H
Q 032791 34 HSVSAFVQNSIFS-NK-IVIFSK-------SYCPYCLRAKRIFADL----NEQPFVVELDLRDDGAQIQ---YILLD--L 95 (133)
Q Consensus 34 ~~~~~~~~~~~~~-~~-Vviy~~-------~~Cp~C~~ak~~L~~~----~~~~~~~~id~~~~~~~~~---~~l~~--~ 95 (133)
++..+.+++...+ .+ +++|+. +|||+|.+|...+++. .....++.+.+..- ...+ ..++. .
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r-~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDR-PEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---H-HHHC-TTSHHHH--C
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCH-HHhCCCCCCceEcce
Confidence 3455666664433 34 444443 6999999999776553 22333566655321 1111 13333 3
Q ss_pred cCCCcccEEEE
Q 032791 96 VGRRTVPQIFV 106 (133)
Q Consensus 96 ~g~~~vP~vfi 106 (133)
....++|+++-
T Consensus 85 ~~l~~IPTLi~ 95 (119)
T PF06110_consen 85 LKLKGIPTLIR 95 (119)
T ss_dssp C---SSSEEEE
T ss_pred eeeeecceEEE
Confidence 56789999974
No 197
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.02 E-value=0.012 Score=40.23 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=17.3
Q ss_pred CCcEEEEEeCCChhHHHHHHHHH
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFA 68 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~ 68 (133)
+..|++|....||+|.+....+.
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHH
T ss_pred CeEEEEEECCCCHhHHHHHHHHh
Confidence 34589999999999998766653
No 198
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0077 Score=44.72 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=56.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHc-CCCcccEEEECCeEeeccHHHHHHHH
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLV-GRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~-g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
..|.+|+.-.|||-++++-.|+..++.++|++.|...-+ +-|.+.+ -...||++..||+.|.-.-.+.++..
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks----~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiD 80 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKS----EWLLEKNPVHKKVPVLEHNGKPICESLIIVEYID 80 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCC----HHHHHhccccccCCEEEECCceehhhHHHHHHHH
Confidence 669999999999999999999999998778888876421 2333333 57899999999999887666666643
No 199
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.95 E-value=0.0046 Score=41.07 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=18.9
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
.-|+.|+++|||.|.+..+.|+++
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHHH
Confidence 347778999999999887777655
No 200
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.89 E-value=0.0086 Score=36.76 Aligned_cols=69 Identities=9% Similarity=-0.010 Sum_probs=47.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHH--HcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLD--LVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~--~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
.++|+.+.++.|.+++-+|...++.+..+.+|..+ .. ..+.. ......+|++.+||..+.....+..+.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~---~~-~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAE---DL-EKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYI 72 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHH---HH-HhhccccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence 56888899999999999999999875555555421 11 11111 123568999999998887776666554
No 201
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.85 E-value=0.0096 Score=41.68 Aligned_cols=61 Identities=21% Similarity=0.438 Sum_probs=37.4
Q ss_pred EEEeCCChhHHHH----HHHHHhcCCC---CeEEEEcCCCCHHHHH--------------------HHHHHHcCCCcccE
Q 032791 51 IFSKSYCPYCLRA----KRIFADLNEQ---PFVVELDLRDDGAQIQ--------------------YILLDLVGRRTVPQ 103 (133)
Q Consensus 51 iy~~~~Cp~C~~a----k~~L~~~~~~---~~~~~id~~~~~~~~~--------------------~~l~~~~g~~~vP~ 103 (133)
.|+..|||.|+.. ++++++..-+ ..++.++.+.+.++.. +.|.+.++..++|.
T Consensus 39 yFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~ 118 (157)
T KOG2501|consen 39 YFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIPA 118 (157)
T ss_pred EEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCce
Confidence 3556899999954 4444444322 3355565555544333 34555677889999
Q ss_pred EEE---CCeEe
Q 032791 104 IFV---NGEHI 111 (133)
Q Consensus 104 vfi---~G~~i 111 (133)
+.+ +|+.|
T Consensus 119 l~i~~~dG~~v 129 (157)
T KOG2501|consen 119 LVILKPDGTVV 129 (157)
T ss_pred eEEecCCCCEe
Confidence 976 67655
No 202
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.0089 Score=43.69 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=52.9
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
-.||+|+++...|...++.+.+..+|....+ +.+...++...+|.+..||+.+-..+.+++..+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp----~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKP----EWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCc----HHHHhhCCCCCCCeEEeCCceeccHHHHHHHHH
Confidence 3699999999999988885557888887763 466778899999999999999998888877644
No 203
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.78 E-value=0.0037 Score=40.92 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=22.3
Q ss_pred EEeCCChhHHHHHHHHHhcCCCCeEEEEcCCC
Q 032791 52 FSKSYCPYCLRAKRIFADLNEQPFVVELDLRD 83 (133)
Q Consensus 52 y~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~ 83 (133)
|+.+.|.-|++|.++|++.++. |..+|...
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~--~~~~d~~k 30 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIE--YEFIDYKK 30 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT----EEEEETTT
T ss_pred CcCCCCHHHHHHHHHHHHcCCC--eEeehhhh
Confidence 8899999999999999999987 45667654
No 204
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.76 E-value=0.01 Score=40.75 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=53.3
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCC----CcccEEEECCeEeecc---HHHH
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR----RTVPQIFVNGEHIGGA---DDLK 118 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~----~~vP~vfi~G~~igG~---~~l~ 118 (133)
..++++|..|+|.=|+.-.+.|+..|.+ +......+ ...+++.+|. .+==+..|||.+|-|. +++.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~---Vk~~~~~d----~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~ 97 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFE---VKVVETDD----FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIA 97 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcE---EEEeecCc----HHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHH
Confidence 4569999999999999999999998864 33333444 3455665554 4667889999999884 5676
Q ss_pred HHHHcCh
Q 032791 119 AAVLSGQ 125 (133)
Q Consensus 119 ~~~~~g~ 125 (133)
.+.+++.
T Consensus 98 ~ll~~~p 104 (149)
T COG3019 98 RLLAEKP 104 (149)
T ss_pred HHHhCCC
Confidence 6665543
No 205
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0067 Score=43.69 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=55.8
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCe-EeeccHHHHHHHHc
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGE-HIGGADDLKAAVLS 123 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~-~igG~~~l~~~~~~ 123 (133)
++|+.+.+|+|.++.-.+.++++.+..+.+|... +...+++...+....||++..+|- .+-....|.++..+
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~ 74 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAE 74 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHh
Confidence 5788899999999999999999866677777764 222466777788999999998775 67777777776544
No 206
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.76 E-value=0.0021 Score=43.70 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=25.0
Q ss_pred hHHHHHHhhccCCc--EEEEEeCCChhHHHHHHHH
Q 032791 35 SVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIF 67 (133)
Q Consensus 35 ~~~~~~~~~~~~~~--Vviy~~~~Cp~C~~ak~~L 67 (133)
+..+.+..+.++++ ++.|+++|||+|++.+...
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 56677777766666 5568889999999888864
No 207
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.74 E-value=0.0076 Score=43.17 Aligned_cols=22 Identities=23% Similarity=0.673 Sum_probs=17.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
|+.|+++|||.|++..+.+.+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~ 99 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSI 99 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHH
Confidence 6679999999999887776543
No 208
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.70 E-value=0.025 Score=38.18 Aligned_cols=45 Identities=27% Similarity=0.445 Sum_probs=27.8
Q ss_pred EEEEEeC-CChhHHHHHHHHHhcC-----CCCeEEEEcCCCCHHHHHHHHHH
Q 032791 49 IVIFSKS-YCPYCLRAKRIFADLN-----EQPFVVELDLRDDGAQIQYILLD 94 (133)
Q Consensus 49 Vviy~~~-~Cp~C~~ak~~L~~~~-----~~~~~~~id~~~~~~~~~~~l~~ 94 (133)
|+.|+.+ |||.|++....|+++. ....++-+....+.. ..+.+.+
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~-~~~~~~~ 82 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP-VREFLKK 82 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH-HHHHHHH
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH-HHHHHHh
Confidence 6778888 9999998887776651 112255666555533 4444433
No 209
>PLN02395 glutathione S-transferase
Probab=96.65 E-value=0.014 Score=41.94 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=53.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
+++|+.+.|+ +.+++-+|.+.|+.+..+.+|.... +...+++.+.+-...+|++..+|..+.....|.++..
T Consensus 3 ~~ly~~~~~~-~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYGPAFAS-PKRALVTLIEKGVEFETVPVDLMKG-EHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEcCCcCc-HHHHHHHHHHcCCCceEEEeccccC-CcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 6889877754 7999999999998765666665432 1223456677788999999999988887777777654
No 210
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=96.58 E-value=0.018 Score=41.64 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=50.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE-----CCe--EeeccHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-----NGE--HIGGADDLKAAV 121 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-----~G~--~igG~~~l~~~~ 121 (133)
+++|+.+ +|+|+++.-+|.++++.+.++.+|.... +...+++.+.+....||++.. ||. .+-....|.++.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKG-GQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCccc-ccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 4678776 6999999999999999766667776433 222356677788899999987 452 455555565554
Q ss_pred H
Q 032791 122 L 122 (133)
Q Consensus 122 ~ 122 (133)
.
T Consensus 80 ~ 80 (215)
T PRK13972 80 A 80 (215)
T ss_pred H
Confidence 3
No 211
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.0052 Score=41.13 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=39.6
Q ss_pred hhHHHHHHhhccCCcEEEEEe---------CCChhHHHHHHHHHhc----CCCCeEEEEcCCCCHHHH---HHHHHHHcC
Q 032791 34 HSVSAFVQNSIFSNKIVIFSK---------SYCPYCLRAKRIFADL----NEQPFVVELDLRDDGAQI---QYILLDLVG 97 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~---------~~Cp~C~~ak~~L~~~----~~~~~~~~id~~~~~~~~---~~~l~~~~g 97 (133)
++.++.++..-+..+|.+|.. ||||+|.+|.+.+.+. ..+..++.+++..- +.. ...++.-.+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r-p~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR-PYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC-CcccCCCCccccCCC
Confidence 445555555545555555443 7999999999887553 22333666665331 100 012333334
Q ss_pred C-CcccEEEE
Q 032791 98 R-RTVPQIFV 106 (133)
Q Consensus 98 ~-~~vP~vfi 106 (133)
. ..+|++.-
T Consensus 92 ~lt~vPTLlr 101 (128)
T KOG3425|consen 92 ILTAVPTLLR 101 (128)
T ss_pred ceeecceeeE
Confidence 4 67888853
No 212
>PRK10357 putative glutathione S-transferase; Provisional
Probab=96.48 E-value=0.016 Score=41.30 Aligned_cols=68 Identities=9% Similarity=0.022 Sum_probs=49.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE-CCeEeeccHHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIGGADDLKAAV 121 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~G~~igG~~~l~~~~ 121 (133)
.+|+.+.||++++++-+|...++.+.++.++..... ..+.+.+....+|++.. +|..+-....|..+.
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~----~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL 70 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNAD----NGVAQYNPLGKVPALVTEEGECWFDSPIIAEYI 70 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCc----hhhhhcCCccCCCeEEeCCCCeeecHHHHHHHH
Confidence 579999999999999999999997555555543331 23445577889999985 677776655565543
No 213
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.39 E-value=0.0076 Score=43.96 Aligned_cols=67 Identities=28% Similarity=0.441 Sum_probs=36.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCe----EEEEc---------CCCC--HHHHHHHHHHHcC--CCcccEEEECCe-E
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPF----VVELD---------LRDD--GAQIQYILLDLVG--RRTVPQIFVNGE-H 110 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~----~~~id---------~~~~--~~~~~~~l~~~~g--~~~vP~vfi~G~-~ 110 (133)
|.+||+.+|+.|--|-++|.++..++. -..+| .-.. ....++...+..| ....|+++|||+ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 679999999999999999988742211 12222 1111 1122333344444 446899999995 6
Q ss_pred eeccH
Q 032791 111 IGGAD 115 (133)
Q Consensus 111 igG~~ 115 (133)
.+|++
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 66765
No 214
>PRK11752 putative S-transferase; Provisional
Probab=96.39 E-value=0.025 Score=42.56 Aligned_cols=78 Identities=6% Similarity=0.106 Sum_probs=54.7
Q ss_pred hccCCcEEEEEeCCChhHHHHHHHHHhc------CCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECC----eEee
Q 032791 43 SIFSNKIVIFSKSYCPYCLRAKRIFADL------NEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG----EHIG 112 (133)
Q Consensus 43 ~~~~~~Vviy~~~~Cp~C~~ak~~L~~~------~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G----~~ig 112 (133)
....+.+.+|+. .||+|+++.-+|.++ ++.+.++.+|.... +...+++.+.+-...||++..++ ..+.
T Consensus 39 ~~~~~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~-~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ 116 (264)
T PRK11752 39 PVGKHPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEG-DQFSSGFVEINPNSKIPALLDRSGNPPIRVF 116 (264)
T ss_pred CCCCCCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccc-cccCHHHHhhCCCCCCCEEEeCCCCCCeEEE
Confidence 445567899985 599999999999996 66555666776442 22235666777888999998753 4666
Q ss_pred ccHHHHHHHH
Q 032791 113 GADDLKAAVL 122 (133)
Q Consensus 113 G~~~l~~~~~ 122 (133)
....|..+..
T Consensus 117 ES~AIl~YL~ 126 (264)
T PRK11752 117 ESGAILLYLA 126 (264)
T ss_pred cHHHHHHHHH
Confidence 6666666543
No 215
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.18 E-value=0.022 Score=47.08 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=19.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
++-|+++|||.|++..+.|+++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 6669999999999999888776
No 216
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.045 Score=40.20 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=50.4
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeec----cHHHHHHH
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGG----ADDLKAAV 121 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG----~~~l~~~~ 121 (133)
...|-||+..+|..|--.-+.|+..|..+.+.-+|...- ..+.-..+.-++|.||+||+.+-+ .++++...
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p-----~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~ 84 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELP-----PFLAFEKGVISVPSVFIDGELVYADPVDPEEIESIL 84 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCC-----hHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHH
Confidence 356899999999999999999999887655333343332 233333478899999999997743 45665443
No 217
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=96.16 E-value=0.047 Score=33.15 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=49.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCC-CcccEEEEC-CeEeeccHHHHHHH
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR-RTVPQIFVN-GEHIGGADDLKAAV 121 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~-~~vP~vfi~-G~~igG~~~l~~~~ 121 (133)
+..|..++ .|..++-+|+..++.+..+.+|...... ..+++.+.... ..+|.+..+ |..+.....+..+.
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~-~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YL 74 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEH-KSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYL 74 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGG-GSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccc-cchhhhhcccccceeeEEEECCCCEEEcHHHHHHHh
Confidence 45666666 8899999999999876566677654322 12566666667 899999999 98888776665553
No 218
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.019 Score=41.26 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=50.4
Q ss_pred EEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHc
Q 032791 52 FSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLS 123 (133)
Q Consensus 52 y~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~ 123 (133)
|+++.|.+-.++. |.-.++++.|..+|.....+..-.++++......||++.|||..+-..-.+++++++
T Consensus 11 YWrSSCswRVRiA--LaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeE 80 (217)
T KOG0868|consen 11 YWRSSCSWRVRIA--LALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEE 80 (217)
T ss_pred hhcccchHHHHHH--HHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHh
Confidence 6667887655554 444455566788887666444456888888889999999999988776666666554
No 219
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=96.11 E-value=0.051 Score=32.99 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=41.8
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHc
Q 032791 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLS 123 (133)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~ 123 (133)
+.+|+|-++..+|+-.++.+ +++...+. .......+|.+..+|+.|++++.++++.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~---~v~~~~n~--------~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPL---KVVPSNNP--------WRSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCE---EEEecCCC--------CCCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 45799999999999998752 22222220 012345699999999999999999887653
No 220
>PHA03075 glutaredoxin-like protein; Provisional
Probab=96.07 E-value=0.011 Score=39.18 Aligned_cols=35 Identities=14% Similarity=0.542 Sum_probs=29.4
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcC
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~ 81 (133)
..+++|++|.|+-|+-+.++|+++.-++.+..+|+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNI 37 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNI 37 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEe
Confidence 35889999999999999999999886666666665
No 221
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=96.04 E-value=0.013 Score=43.58 Aligned_cols=103 Identities=21% Similarity=0.241 Sum_probs=56.5
Q ss_pred ccchhHHHHHHhhhHH-HhhhcCCCCCcccchhhHHHHHHhhcc-CCcEEEEEeCCChhHHHHHHHHHhcCCCCeEE---
Q 032791 3 KRGWQSRFLVEAVGLL-FFLLLGNAPTATEADHSVSAFVQNSIF-SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVV--- 77 (133)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~--- 77 (133)
|.|||-..+....+.+ -|+.....+..+-.+... ....+ ..-|.+||+.+|..|--+-+.|.++.-++.++
T Consensus 1 M~s~rrl~~~~~~l~~~~~~a~~~~g~~~~~sa~~----~~~~k~~~VVELfTSQGCsSCPPAd~~l~k~a~~~~vlALs 76 (261)
T COG5429 1 MISARRLTLSRGALFLSAVAAAHSAGAFACSSAHA----QSAAKPLGVVELFTSQGCSSCPPADANLAKLADDPGVLALS 76 (261)
T ss_pred CccchhhhhhhhHHHHHHHHhhcchhhHHhhhhcc----CCCCCCceEEEEeecCCcCCCChHHHHHHHhccCCCEEEEE
Confidence 5678777777666665 333444433210000000 00111 12267899999999999999999886444322
Q ss_pred -EEc---------C--CCCHHHHHHHHHHHcCCC--cccEEEECCe
Q 032791 78 -ELD---------L--RDDGAQIQYILLDLVGRR--TVPQIFVNGE 109 (133)
Q Consensus 78 -~id---------~--~~~~~~~~~~l~~~~g~~--~vP~vfi~G~ 109 (133)
.+| . ..+..+.+....+..|.+ ..|++++||+
T Consensus 77 yhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 77 YHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred EeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 122 1 112223344444455544 5699999996
No 222
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.016 Score=41.52 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=43.7
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEE-ECCeEeeccHHHHHHH
Q 032791 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIF-VNGEHIGGADDLKAAV 121 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf-i~G~~igG~~~l~~~~ 121 (133)
+|..+.||||.+|+-.+.-.++......++-+++ +.=-..-|+..||.+. -+|+.++..=+++.+.
T Consensus 3 LYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe-----~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~ 69 (215)
T COG2999 3 LYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDE-----ETPIRMIGQKQVPILQKEDGRAMPESLDIVHYV 69 (215)
T ss_pred eeEeccChHHHHHHHHhhccCCChhhheeccCcc-----cChhhhhcccccceEEccccccchhhhHHHHHH
Confidence 6788999999999999988887422111111111 1112355999999986 4888888766666654
No 223
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=95.93 E-value=0.052 Score=34.43 Aligned_cols=72 Identities=19% Similarity=0.402 Sum_probs=37.0
Q ss_pred EEEEeC-CChhHH------HHHHHHHhc-----CCCCe-EEEEcCCCCH--HHHHHHHHHHc-CCCcccEEEECCeEee-
Q 032791 50 VIFSKS-YCPYCL------RAKRIFADL-----NEQPF-VVELDLRDDG--AQIQYILLDLV-GRRTVPQIFVNGEHIG- 112 (133)
Q Consensus 50 viy~~~-~Cp~C~------~ak~~L~~~-----~~~~~-~~~id~~~~~--~~~~~~l~~~~-g~~~vP~vfi~G~~ig- 112 (133)
++|++. -|+.|. .....|+.. ...++ +..+|+.... ++-++...+.. .---.|.|.++|+.||
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 578885 488875 344444332 33333 6777775432 22233333332 3457899999999998
Q ss_pred ccHHHHHHH
Q 032791 113 GADDLKAAV 121 (133)
Q Consensus 113 G~~~l~~~~ 121 (133)
|...++...
T Consensus 81 Gnp~LK~I~ 89 (93)
T PF07315_consen 81 GNPQLKDIY 89 (93)
T ss_dssp SS--HHHHH
T ss_pred CCccHHHHH
Confidence 566665543
No 224
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.88 E-value=0.03 Score=49.99 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLN 71 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~ 71 (133)
++-|+++|||.|++..+.|+++.
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l~ 446 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFLE 446 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHHH
Confidence 66699999999999888887653
No 225
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=95.85 E-value=0.066 Score=38.52 Aligned_cols=27 Identities=4% Similarity=-0.075 Sum_probs=22.2
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcC
Q 032791 45 FSNKIVIFSKSYCPYCLRAKRIFADLN 71 (133)
Q Consensus 45 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~ 71 (133)
..-.++-|+.+|||.|+.-.+++.++.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~ 85 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIK 85 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHH
Confidence 334577899999999999999988774
No 226
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0064 Score=49.73 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=34.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCe------EEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPF------VVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~------~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
.+.|++|||++|++..+.+++++..+. +-.+|...+.- . ......+|+|+.
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~-----~~~~~~fPTI~~ 444 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--P-----SLKVDGFPTILF 444 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--c-----cccccccceEEE
Confidence 677999999999999999988863221 44556554311 1 113455999965
No 227
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.71 E-value=0.021 Score=45.50 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=35.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC----C---CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLN----E---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~----~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
++.|+++||+.|+...+.+.++. . ...+..+|...+. +.. .+..++|++++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~------~~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND------VPP-FEVEGFPTIKF 425 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc------cCC-CCccccCEEEE
Confidence 66799999999999988887652 1 1225677776541 222 57889999965
No 228
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.02 Score=45.36 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=40.7
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
..-++.|..|||++|++....+.++. ....+-.+|...+ ..+.+.++...+|++.+
T Consensus 48 ~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~-----~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 48 SPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH-----KDLCEKYGIQGFPTLKV 107 (383)
T ss_pred CceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh-----HHHHHhcCCccCcEEEE
Confidence 44589999999999999888877652 1112445555444 57778889999999954
No 229
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.55 E-value=0.092 Score=37.06 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=29.1
Q ss_pred EEEEEeCCChhHHHHHH----------HHHhcCCCCeEEEEcCCCCHHHHH----HHHHHHcCCCcccEEEE---CCeEe
Q 032791 49 IVIFSKSYCPYCLRAKR----------IFADLNEQPFVVELDLRDDGAQIQ----YILLDLVGRRTVPQIFV---NGEHI 111 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~----------~L~~~~~~~~~~~id~~~~~~~~~----~~l~~~~g~~~vP~vfi---~G~~i 111 (133)
++-++.+||.+|+.+.+ +|.+.-+ -+.+|.++. +.+. ......+|..+.|...+ +|+.+
T Consensus 41 fl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI---~VkvDree~-Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 41 FLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFI---PVKVDREER-PDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp EEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-E---EEEEETTT--HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred EEEEEecCCcchhhhcccCcCCHHHHHHHhCCEE---EEEeccccC-ccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 34467799999996654 3333222 356666554 2222 22234458888998754 67766
Q ss_pred e
Q 032791 112 G 112 (133)
Q Consensus 112 g 112 (133)
.
T Consensus 117 ~ 117 (163)
T PF03190_consen 117 F 117 (163)
T ss_dssp E
T ss_pred e
Confidence 3
No 230
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.42 E-value=0.098 Score=36.45 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=17.3
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
..++.|+.+|||.|.+....|.++
T Consensus 27 ~~ll~f~~t~Cp~c~~~~~~l~~l 50 (171)
T cd02969 27 ALVVMFICNHCPYVKAIEDRLNRL 50 (171)
T ss_pred EEEEEEECCCCccHHHHHHHHHHH
Confidence 347778889999998655555444
No 231
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.38 E-value=0.042 Score=45.69 Aligned_cols=58 Identities=16% Similarity=0.360 Sum_probs=41.5
Q ss_pred cEEE-EEeCCChhHHHHHHHHHhc-----C-CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 48 KIVI-FSKSYCPYCLRAKRIFADL-----N-EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 48 ~Vvi-y~~~~Cp~C~~ak~~L~~~-----~-~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
+|.+ |+.+||-.|+..+++.-+- . .+....+.|.+.++++..+.|++ +|.-++|.+++
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~-~~~~G~P~~~f 540 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKR-LGVFGVPTYLF 540 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHH-cCCCCCCEEEE
Confidence 3444 9999999999888775321 1 12226788998887887766665 58999999854
No 232
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.37 E-value=0.032 Score=34.58 Aligned_cols=55 Identities=20% Similarity=0.494 Sum_probs=32.8
Q ss_pred EEeCCChhHHHHHHHHHhcCCC----CeEEEEcCC-CCHHHHHHHHHHHcCCCcccEEE--ECCe
Q 032791 52 FSKSYCPYCLRAKRIFADLNEQ----PFVVELDLR-DDGAQIQYILLDLVGRRTVPQIF--VNGE 109 (133)
Q Consensus 52 y~~~~Cp~C~~ak~~L~~~~~~----~~~~~id~~-~~~~~~~~~l~~~~g~~~vP~vf--i~G~ 109 (133)
|+++|||+|+...+.|.+.... ..++.+|.. .. ......+.. ....+|.+. .+|.
T Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~--~~~~~p~~~~~~~~~ 100 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDEN-PDLAAEFGV--AVRSIPTLLLFKDGK 100 (127)
T ss_pred EEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCC-hHHHHHHhh--hhccCCeEEEEeCcc
Confidence 3699999999999998776421 236777775 33 222222221 145567765 4554
No 233
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.093 Score=38.67 Aligned_cols=74 Identities=15% Similarity=0.081 Sum_probs=59.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
+.++|+.+.-|.|+++.-.++.+++...+..+|...- ++..+++.+.....+||++.-+|-.+-....|..+..
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~g-e~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~ 75 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKG-EQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLA 75 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeecccc-ccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHH
Confidence 4679999999999999999999998766565666543 4445677788889999999999988887777766643
No 234
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.14 E-value=0.38 Score=31.49 Aligned_cols=68 Identities=24% Similarity=0.375 Sum_probs=43.2
Q ss_pred hhccCCcEEEEEeCC-ChhHHHHHHHHHhc----C--CCCeEEEEcCCCCHHHHHHHHHHHcCCC-cccEEEE--CCeEe
Q 032791 42 NSIFSNKIVIFSKSY-CPYCLRAKRIFADL----N--EQPFVVELDLRDDGAQIQYILLDLVGRR-TVPQIFV--NGEHI 111 (133)
Q Consensus 42 ~~~~~~~Vviy~~~~-Cp~C~~ak~~L~~~----~--~~~~~~~id~~~~~~~~~~~l~~~~g~~-~vP~vfi--~G~~i 111 (133)
+.-...+++||=-++ ||-...|.+-|++. . +. +..+|+..+ ..+-.++++.+|.. .-||+++ ||+.+
T Consensus 15 ~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~--~y~l~v~~~-R~vSn~IAe~~~V~HeSPQ~ili~~g~~v 91 (105)
T PF11009_consen 15 EESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIP--VYYLDVIEY-RPVSNAIAEDFGVKHESPQVILIKNGKVV 91 (105)
T ss_dssp HH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGG-HHHHHHHHHHHT----SSEEEEEETTEEE
T ss_pred HhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccce--EEEEEEEeC-chhHHHHHHHhCCCcCCCcEEEEECCEEE
Confidence 334466788887766 99999888887664 2 32 467788776 55567888888864 6699865 89877
Q ss_pred e
Q 032791 112 G 112 (133)
Q Consensus 112 g 112 (133)
-
T Consensus 92 ~ 92 (105)
T PF11009_consen 92 W 92 (105)
T ss_dssp E
T ss_pred E
Confidence 4
No 235
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=94.91 E-value=0.36 Score=29.68 Aligned_cols=71 Identities=7% Similarity=-0.037 Sum_probs=45.0
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHH-HHHHHHHH----cCCCcccEEEECCeEeeccHHHHHHH
Q 032791 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQ-IQYILLDL----VGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~-~~~~l~~~----~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
+|+-+.-+.|.+++-+|...++.+..+.+|....... -.+..... .-...+|++..||..+.-...+..+.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence 4444555788999999999998765667776442110 01111111 14569999999998887666665554
No 236
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=94.89 E-value=0.093 Score=35.98 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=16.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
++.|+.+||| |.+....|+++
T Consensus 26 vl~fwatwC~-C~~e~p~l~~l 46 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEAL 46 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHHH
Confidence 5669999999 99877777664
No 237
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=94.48 E-value=0.18 Score=32.78 Aligned_cols=70 Identities=20% Similarity=0.345 Sum_probs=43.0
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcC-----CCcccEEEECCe-EeeccHHHHHHHHc
Q 032791 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVG-----RRTVPQIFVNGE-HIGGADDLKAAVLS 123 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g-----~~~vP~vfi~G~-~igG~~~l~~~~~~ 123 (133)
||+...||+|......+........+.-++...... .++.+..| ..+.-.+.-+|+ ...|.+.+..+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPD---QALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhh---hhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 477889999999999999987433345556633212 11111122 223334433776 88998888776554
No 238
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.025 Score=41.69 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=20.0
Q ss_pred HHHcCCCcccEEEECCeEeeccHHHH
Q 032791 93 LDLVGRRTVPQIFVNGEHIGGADDLK 118 (133)
Q Consensus 93 ~~~~g~~~vP~vfi~G~~igG~~~l~ 118 (133)
....|....|++|++|..++|.-.+.
T Consensus 208 a~~~gv~gTPt~~v~~~~~~g~~~~~ 233 (244)
T COG1651 208 AQQLGVNGTPTFIVNGKLVPGLPDLD 233 (244)
T ss_pred HHhcCCCcCCeEEECCeeecCCCCHH
Confidence 34458899999999999888865543
No 239
>PRK10542 glutathionine S-transferase; Provisional
Probab=94.23 E-value=0.23 Score=35.16 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=47.3
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE-CCeEeeccHHHHHHH
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIGGADDLKAAV 121 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~G~~igG~~~l~~~~ 121 (133)
.+|+.++ +.+.++.-+|.+.|+.+..+.+|.........+++.+.+....+|++.+ ||..|.....|.++.
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL 73 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYL 73 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHH
Confidence 3566543 3467888899999997666666664321111245667778899999986 677777666666654
No 240
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.19 E-value=0.19 Score=36.49 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=52.4
Q ss_pred HHHHHHhhccCCcEE-EEEeCCChhHHHHHHH---HHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEE--EECCe
Q 032791 36 VSAFVQNSIFSNKIV-IFSKSYCPYCLRAKRI---FADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQI--FVNGE 109 (133)
Q Consensus 36 ~~~~~~~~~~~~~Vv-iy~~~~Cp~C~~ak~~---L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~v--fi~G~ 109 (133)
-.+++....++.+|| -|+.+.---|+-+-.- |....+...|+.+|.... +.|....+.+.+|+| |.||.
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~-----PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKA-----PFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccC-----ceeeeeeeeeEeeeEEEEEcCE
Confidence 455666666677755 4888886666555444 444455545788888665 678888899999999 66886
Q ss_pred ---EeeccHHH
Q 032791 110 ---HIGGADDL 117 (133)
Q Consensus 110 ---~igG~~~l 117 (133)
.|-||.+|
T Consensus 149 ~~D~iVGF~dL 159 (211)
T KOG1672|consen 149 TVDYVVGFTDL 159 (211)
T ss_pred EEEEEeeHhhc
Confidence 44566654
No 241
>PTZ00056 glutathione peroxidase; Provisional
Probab=94.00 E-value=0.3 Score=35.33 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=17.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
++.|+.+|||.|.+-.+.|.++
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l 64 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRL 64 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 6679999999999766665554
No 242
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.97 E-value=0.086 Score=40.88 Aligned_cols=67 Identities=27% Similarity=0.336 Sum_probs=44.1
Q ss_pred hhccCCc--EEEEEeCCChhHHHHHHHHHhcCC-----CCe--EEEEcCCCCHHHHHHHHHHHcCCCcccEE--EECCeE
Q 032791 42 NSIFSNK--IVIFSKSYCPYCLRAKRIFADLNE-----QPF--VVELDLRDDGAQIQYILLDLVGRRTVPQI--FVNGEH 110 (133)
Q Consensus 42 ~~~~~~~--Vviy~~~~Cp~C~~ak~~L~~~~~-----~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~v--fi~G~~ 110 (133)
.++..+. .+-|+++|||+.+..++++.+... .|. ++.-.++.+. ...++..+....+|++ |.||..
T Consensus 8 ~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~---e~~ia~ky~I~KyPTlKvfrnG~~ 84 (375)
T KOG0912|consen 8 SILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK---EDDIADKYHINKYPTLKVFRNGEM 84 (375)
T ss_pred HhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch---hhHHhhhhccccCceeeeeeccch
Confidence 3444455 445999999999999999877531 121 2333333321 3677788888999998 678865
Q ss_pred e
Q 032791 111 I 111 (133)
Q Consensus 111 i 111 (133)
+
T Consensus 85 ~ 85 (375)
T KOG0912|consen 85 M 85 (375)
T ss_pred h
Confidence 5
No 243
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=93.93 E-value=0.2 Score=30.67 Aligned_cols=58 Identities=16% Similarity=0.050 Sum_probs=41.1
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHH
Q 032791 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
+..+.|.++..+|+.+|+.+..+ +.... +. ......+|.+.+||+.|++..-+..+..
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~--~~~~~-~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVR--CRANA-EF-------MSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEE--ecCCc-cc-------cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 57788999999999999864322 33211 10 1123679999999999999888877653
No 244
>PTZ00256 glutathione peroxidase; Provisional
Probab=93.92 E-value=0.25 Score=35.09 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=15.7
Q ss_pred EEEEeCCChhHHHHHHHHHhc
Q 032791 50 VIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~ 70 (133)
++++.+|||.|.+-.+.|+++
T Consensus 46 v~n~atwCp~C~~e~p~l~~l 66 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVEL 66 (183)
T ss_pred EEEECCCCCchHHHHHHHHHH
Confidence 457899999999866665544
No 245
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.77 E-value=0.01 Score=49.14 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=45.6
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCC--Ce--EEEEcCCCCHHHHHHHHHHHcCCCcccEEEE------C---CeEee
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQ--PF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFV------N---GEHIG 112 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~~~--~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi------~---G~~ig 112 (133)
+..+|-|..+||++|++..+.++++... .. ++.+-..+..++....+.+.++.+.+|+++. + |..+.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~ 137 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVS 137 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCccc
Confidence 4568889999999999999998887421 11 2333222222333467778889999999954 2 56666
Q ss_pred c
Q 032791 113 G 113 (133)
Q Consensus 113 G 113 (133)
|
T Consensus 138 ~ 138 (606)
T KOG1731|consen 138 G 138 (606)
T ss_pred C
Confidence 6
No 246
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=93.62 E-value=0.2 Score=37.35 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=17.9
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
.-|+.|+.+|||.|..-...|.++
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L 124 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHL 124 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHH
Confidence 347789999999998766555544
No 247
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.55 E-value=1.2 Score=28.53 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=44.0
Q ss_pred cCCcEEEEEeCC-ChhHH------HHHHHHHhc------CCCCeEEEEcCCCC--HHHHHHHHHHH-cCCCcccEEEECC
Q 032791 45 FSNKIVIFSKSY-CPYCL------RAKRIFADL------NEQPFVVELDLRDD--GAQIQYILLDL-VGRRTVPQIFVNG 108 (133)
Q Consensus 45 ~~~~Vviy~~~~-Cp~C~------~ak~~L~~~------~~~~~~~~id~~~~--~~~~~~~l~~~-~g~~~vP~vfi~G 108 (133)
...++++|++.. |..|. .....|+.. +..+.+..+|+... .++..+...++ ..---.|.|.++|
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivved 82 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVED 82 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcc
Confidence 345689999864 77775 444455443 22222777788432 23333332232 2234689999999
Q ss_pred eEee-ccHHHHHH
Q 032791 109 EHIG-GADDLKAA 120 (133)
Q Consensus 109 ~~ig-G~~~l~~~ 120 (133)
+.|+ |...++..
T Consensus 83 eiVaeGnprlKdi 95 (106)
T COG4837 83 EIVAEGNPRLKDI 95 (106)
T ss_pred eEeecCCchHHHH
Confidence 9996 45555443
No 248
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.49 E-value=0.39 Score=39.90 Aligned_cols=54 Identities=6% Similarity=0.071 Sum_probs=38.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC-CCCe--EEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLN-EQPF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~-~~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
.+++|+.+.|++|..++++|+++. ..+. +...|...+ +.+.+.+|...+|.+.+
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~-----~~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE-----PESETLPKITKLPTVAL 425 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc-----hhhHhhcCCCcCCEEEE
Confidence 466788899999999999998864 2222 344454433 34455678888999976
No 249
>PTZ00057 glutathione s-transferase; Provisional
Probab=93.46 E-value=0.77 Score=32.89 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=48.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHH--HHHHH--HHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQI--QYILL--DLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~--~~~l~--~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
++++|+.+..+.|.+++-+|...|+.+ ..+......++. .+++. ..+....+|++.+||..+.....+..+.
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~y--e~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEY--TDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCe--EEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 478898888999999999999999963 333332221111 11112 2456789999999998887766665553
No 250
>PLN02412 probable glutathione peroxidase
Probab=93.25 E-value=0.25 Score=34.59 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=15.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
|+.|+.+|||.|.+....|.++
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~l 54 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNVL 54 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHHH
Confidence 5568899999999655445443
No 251
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=93.24 E-value=0.47 Score=31.53 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=17.0
Q ss_pred CcEEEEEeCCChh-HHHHHHHHHh
Q 032791 47 NKIVIFSKSYCPY-CLRAKRIFAD 69 (133)
Q Consensus 47 ~~Vviy~~~~Cp~-C~~ak~~L~~ 69 (133)
.-|+.|+.+|||. |.+....|++
T Consensus 24 ~~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 24 PVLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EEEEEEEcCCCcccCHHHHHHHHH
Confidence 3477889999997 9866555544
No 252
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=93.14 E-value=0.22 Score=33.41 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=16.7
Q ss_pred CcEEEEEeCC-ChhHHHHHHHHHhc
Q 032791 47 NKIVIFSKSY-CPYCLRAKRIFADL 70 (133)
Q Consensus 47 ~~Vviy~~~~-Cp~C~~ak~~L~~~ 70 (133)
.-|+.|+..| ||.|.+....|.++
T Consensus 28 ~vvl~f~~~~~c~~C~~e~~~l~~~ 52 (143)
T cd03014 28 VKVISVFPSIDTPVCATQTKRFNKE 52 (143)
T ss_pred eEEEEEEcCCCCCcCHHHHHHHHHH
Confidence 3355667767 79999877777554
No 253
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.11 E-value=0.094 Score=36.36 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
...|++|+...||+|.++...+..+
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHH
Confidence 4569999999999999888777554
No 254
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=93.05 E-value=0.52 Score=32.14 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=40.6
Q ss_pred EEEEEeC---CChhHHHHHHHHHhcCCC-----CeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEeec
Q 032791 49 IVIFSKS---YCPYCLRAKRIFADLNEQ-----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGG 113 (133)
Q Consensus 49 Vviy~~~---~Cp~C~~ak~~L~~~~~~-----~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~igG 113 (133)
.++|... .+|.+..+--.|.++... ..+..+|++.+ +++...+|..++|++.+ ||+.+|-
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-----~~LA~~fgV~siPTLl~FkdGk~v~~ 106 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-----EAIGDRFGVFRFPATLVFTGGNYRGV 106 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-----HHHHHHcCCccCCEEEEEECCEEEEE
Confidence 4444442 377777666666555311 22677888776 57788899999999944 9987753
No 255
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=92.73 E-value=0.26 Score=31.91 Aligned_cols=24 Identities=21% Similarity=0.669 Sum_probs=16.4
Q ss_pred CcEEEEEeC-CChhHHHHHHHHHhc
Q 032791 47 NKIVIFSKS-YCPYCLRAKRIFADL 70 (133)
Q Consensus 47 ~~Vviy~~~-~Cp~C~~ak~~L~~~ 70 (133)
.-|+.|+.. |||.|......|.++
T Consensus 27 ~~vl~f~~~~~c~~c~~~l~~l~~~ 51 (124)
T PF00578_consen 27 PVVLFFWPTAWCPFCQAELPELNEL 51 (124)
T ss_dssp EEEEEEESTTTSHHHHHHHHHHHHH
T ss_pred cEEEEEeCccCccccccchhHHHHH
Confidence 336667777 999998666655543
No 256
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=92.43 E-value=0.39 Score=32.08 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=16.4
Q ss_pred cEEEEE-eCCChhHHHHHHHHHhc
Q 032791 48 KIVIFS-KSYCPYCLRAKRIFADL 70 (133)
Q Consensus 48 ~Vviy~-~~~Cp~C~~ak~~L~~~ 70 (133)
.|++|. ..|||.|++-...|.++
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~ 49 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKL 49 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHH
Confidence 355554 78999999877766654
No 257
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=92.32 E-value=1 Score=30.36 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCCH------HHHHHHHHHHcCCCcccEEEECCeEe--eccHHHHH
Q 032791 62 RAKRIFADLNEQPFVVELDLRDDG------AQIQYILLDLVGRRTVPQIFVNGEHI--GGADDLKA 119 (133)
Q Consensus 62 ~ak~~L~~~~~~~~~~~id~~~~~------~~~~~~l~~~~g~~~vP~vfi~G~~i--gG~~~l~~ 119 (133)
.+.+.|++.+++ +..++...++ +.+.+.|.. .|...+|.++|||+.+ |.|....+
T Consensus 31 ~~~~~Lk~~gv~--v~RyNL~~~P~aF~~n~~V~~~L~~-~G~e~LPitlVdGeiv~~G~YPt~eE 93 (123)
T PF06953_consen 31 ADLDWLKEQGVE--VERYNLAQNPQAFVENPEVNQLLQT-EGAEALPITLVDGEIVKTGRYPTNEE 93 (123)
T ss_dssp HHHHHHHHTT-E--EEEEETTT-TTHHHHSHHHHHHHHH-H-GGG-SEEEETTEEEEESS---HHH
T ss_pred HHHHHHHhCCce--EEEEccccCHHHHHhCHHHHHHHHH-cCcccCCEEEECCEEEEecCCCCHHH
Confidence 445556666765 5666766543 334444443 4999999999999866 66655544
No 258
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=92.25 E-value=0.15 Score=34.89 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=16.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
|+.|+.+|||.|.+..+-|.++
T Consensus 26 vv~~~as~C~~c~~~~~~l~~l 47 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQEL 47 (153)
T ss_pred EEEEeCCCCCchhhhHHHHHHH
Confidence 6789999999998766654443
No 259
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.54 Score=37.21 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=37.4
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCC----CCe--EEEEcCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032791 45 FSNKIVIFSKSYCPYCLRAKRIFADLNE----QPF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (133)
Q Consensus 45 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~~----~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (133)
+...++.|..|||++|+...+.++++.. ... +..+|.. ....+....+.+.+|++.+
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~-----~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT-----VHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc-----hHHHHhhhhcccCCceEEE
Confidence 3445889999999999998777766531 111 2233332 2356667778889998854
No 260
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=91.46 E-value=0.77 Score=34.91 Aligned_cols=70 Identities=20% Similarity=0.384 Sum_probs=47.7
Q ss_pred HHhhccCCcEEEEEeC---C----ChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEee
Q 032791 40 VQNSIFSNKIVIFSKS---Y----CPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (133)
Q Consensus 40 ~~~~~~~~~Vviy~~~---~----Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~ig 112 (133)
.++..+..-|.+|.-+ . .|+|.++.-+|+..++. | +.++-. ++.++-..++|-|-.||++|.
T Consensus 37 hk~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~Ip-Y-E~~~~~---------~~~rSr~G~lPFIELNGe~ia 105 (281)
T KOG4244|consen 37 HKTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIP-Y-EIVDCS---------LKRRSRNGTLPFIELNGEHIA 105 (281)
T ss_pred hhhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCC-c-eecccc---------ceeeccCCCcceEEeCCeecc
Confidence 3345555556666543 3 48899999999999985 3 333322 112345779999999999999
Q ss_pred ccHHHHHH
Q 032791 113 GADDLKAA 120 (133)
Q Consensus 113 G~~~l~~~ 120 (133)
+.+-++..
T Consensus 106 DS~~I~~~ 113 (281)
T KOG4244|consen 106 DSDLIEDR 113 (281)
T ss_pred ccHHHHHH
Confidence 98766543
No 261
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=90.96 E-value=1.8 Score=26.22 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE-CCeEeeccHHHHHHH
Q 032791 57 CPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIGGADDLKAAV 121 (133)
Q Consensus 57 Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~G~~igG~~~l~~~~ 121 (133)
-|.|-++..+|+-.+....-+++-...+. ..+....+|.+.. +|+.+.|+.++.++.
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n~--------~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNNP--------WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCCC--------CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 68999999999998864110122222221 1234678999999 999999999998864
No 262
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=90.85 E-value=1.7 Score=28.72 Aligned_cols=65 Identities=9% Similarity=0.180 Sum_probs=39.8
Q ss_pred hHHHHHHhhccCCc-EEEEE-eC----CChhHH------HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCccc
Q 032791 35 SVSAFVQNSIFSNK-IVIFS-KS----YCPYCL------RAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVP 102 (133)
Q Consensus 35 ~~~~~~~~~~~~~~-Vviy~-~~----~Cp~C~------~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP 102 (133)
+..++++...++.| ++||. ++ ||.+|+ .+.+++++ +....-.|+..... ..+....+..++|
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~~eg---~~la~~l~~~~~P 78 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAKPEG---YRVSQALRERTYP 78 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCChHH---HHHHHHhCCCCCC
Confidence 45667777766666 44444 45 578886 34445543 22345567765422 4567778899999
Q ss_pred EEE
Q 032791 103 QIF 105 (133)
Q Consensus 103 ~vf 105 (133)
.+.
T Consensus 79 ~~~ 81 (116)
T cd02991 79 FLA 81 (116)
T ss_pred EEE
Confidence 994
No 263
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=90.64 E-value=0.45 Score=31.49 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=14.8
Q ss_pred cEEEEE-eCCChhHHHHHHHHHh
Q 032791 48 KIVIFS-KSYCPYCLRAKRIFAD 69 (133)
Q Consensus 48 ~Vviy~-~~~Cp~C~~ak~~L~~ 69 (133)
.++.|+ ..|||.|......|.+
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHH
Confidence 355555 5799999876655544
No 264
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=90.59 E-value=0.55 Score=31.55 Aligned_cols=22 Identities=18% Similarity=0.517 Sum_probs=15.2
Q ss_pred EEEEE-eCCChhHHHHHHHHHhc
Q 032791 49 IVIFS-KSYCPYCLRAKRIFADL 70 (133)
Q Consensus 49 Vviy~-~~~Cp~C~~ak~~L~~~ 70 (133)
|++|+ ..|||.|.+....|+++
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~~ 54 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRDS 54 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHHH
Confidence 44555 78999998766655543
No 265
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.48 E-value=0.26 Score=36.57 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=54.0
Q ss_pred HhhhcCCCCCcccc----hhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCCe-----EEEEcCCCCHHHHH
Q 032791 19 FFLLLGNAPTATEA----DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPF-----VVELDLRDDGAQIQ 89 (133)
Q Consensus 19 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~-----~~~id~~~~~~~~~ 89 (133)
++-+|.-.+.+... ++...+.+.+.....=++-|.+.|.|.|++.-+.+.++.+++. +=.+|+..-++...
T Consensus 114 l~~eP~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~ 193 (265)
T KOG0914|consen 114 LAPEPAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAA 193 (265)
T ss_pred hcCccccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHH
Confidence 55566666653222 2333333333333333888999999999999999998876543 55667644322212
Q ss_pred HH-HHHHcCCCcccEEE--ECCeEe
Q 032791 90 YI-LLDLVGRRTVPQIF--VNGEHI 111 (133)
Q Consensus 90 ~~-l~~~~g~~~vP~vf--i~G~~i 111 (133)
+. +....+.+.+|++. -+|+.+
T Consensus 194 kfris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 194 KFRISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred heeeccCcccccCCeEEEEccchhh
Confidence 11 11223567888884 477654
No 266
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=90.09 E-value=1.6 Score=29.70 Aligned_cols=58 Identities=16% Similarity=0.482 Sum_probs=39.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC--CCCe--EEEEcCCCCHHHHHHHHHHHcCCCcccEE--EECCeEe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLN--EQPF--VVELDLRDDGAQIQYILLDLVGRRTVPQI--FVNGEHI 111 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~--~~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~v--fi~G~~i 111 (133)
|+=|+.+|-|-|.+.-.+|.+.. +..+ +.-+|+++. +.+-+.++-...|++ |.+++|+
T Consensus 27 ViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV-----~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 27 VIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV-----PDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred EEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh-----hhhhhhhcccCCceEEEEEcCceE
Confidence 55599999999999999998763 2222 334466543 344556676677776 6788876
No 267
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=89.68 E-value=0.84 Score=31.85 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=16.6
Q ss_pred cEEEEEeCC-ChhHHHHHHHHHhc
Q 032791 48 KIVIFSKSY-CPYCLRAKRIFADL 70 (133)
Q Consensus 48 ~Vviy~~~~-Cp~C~~ak~~L~~~ 70 (133)
-|+.|+.+| ||.|.+-...|.++
T Consensus 47 vvl~f~~s~~cp~C~~e~~~l~~~ 70 (167)
T PRK00522 47 KVLNIFPSIDTGVCATSVRKFNQE 70 (167)
T ss_pred EEEEEEcCCCCCccHHHHHHHHHH
Confidence 366677778 99998766666554
No 268
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=88.48 E-value=1.2 Score=29.47 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=13.0
Q ss_pred EEEEE-eCCChhHHHHHHHHH
Q 032791 49 IVIFS-KSYCPYCLRAKRIFA 68 (133)
Q Consensus 49 Vviy~-~~~Cp~C~~ak~~L~ 68 (133)
++.|+ +.|||.|......|.
T Consensus 27 ll~f~~~~~cp~C~~~~~~l~ 47 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDFR 47 (140)
T ss_pred EEEEeCCCCCCchHHHHHHHH
Confidence 55555 578999986544443
No 269
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=88.40 E-value=0.35 Score=36.69 Aligned_cols=60 Identities=18% Similarity=0.265 Sum_probs=37.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC---CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCeEeecc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGA 114 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~~igG~ 114 (133)
|+-++.+++|.|..+-..|..+.. ...|+.+.....+ +...+....+|+|++ +|..++.+
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~------~~~~f~~~~LPtllvYk~G~l~~~~ 214 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP------ASENFPDKNLPTLLVYKNGDLIGNF 214 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC------TTTTS-TTC-SEEEEEETTEEEEEE
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC------cccCCcccCCCEEEEEECCEEEEeE
Confidence 555788999999999998887642 1226666554321 223456778999965 99877654
No 270
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=88.25 E-value=2.7 Score=27.82 Aligned_cols=49 Identities=20% Similarity=0.543 Sum_probs=32.6
Q ss_pred CChhHHHHHHHHHhcCC---CCeEEEEcCCCCHHHHHHHHHHHcC--CCcccEEEECC
Q 032791 56 YCPYCLRAKRIFADLNE---QPFVVELDLRDDGAQIQYILLDLVG--RRTVPQIFVNG 108 (133)
Q Consensus 56 ~Cp~C~~ak~~L~~~~~---~~~~~~id~~~~~~~~~~~l~~~~g--~~~vP~vfi~G 108 (133)
.||+|..+.-+|..... .-.+..++...- +.++....| +.+.|+++.++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP----R~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP----RQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc----hHHHHHHhChhccCCCEEEeCC
Confidence 39999999999988641 111566666544 344444444 67899998754
No 271
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=87.53 E-value=1.3 Score=31.00 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.0
Q ss_pred HcCCCcccEEEECCeEeeccHHHHHH
Q 032791 95 LVGRRTVPQIFVNGEHIGGADDLKAA 120 (133)
Q Consensus 95 ~~g~~~vP~vfi~G~~igG~~~l~~~ 120 (133)
..|..++|+++|||+.+-|.+.+..+
T Consensus 162 ~~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 162 ARGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HcCCCcCCeEEECCeeecccccHHHH
Confidence 45899999999999999998877543
No 272
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=87.10 E-value=1.7 Score=30.93 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=13.4
Q ss_pred EEEEE-eCCChhHHHHHHHHH
Q 032791 49 IVIFS-KSYCPYCLRAKRIFA 68 (133)
Q Consensus 49 Vviy~-~~~Cp~C~~ak~~L~ 68 (133)
|+.|+ ..|||.|..-...|.
T Consensus 35 vl~F~p~~~cp~C~~el~~l~ 55 (187)
T TIGR03137 35 VFFFYPADFTFVCPTELEDLA 55 (187)
T ss_pred EEEEECCCcCCcCHHHHHHHH
Confidence 44444 689999987555443
No 273
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=86.84 E-value=4.6 Score=28.88 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=15.3
Q ss_pred CcEEEEEeCCChhHHHHHHHHHh
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFAD 69 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~ 69 (133)
.-+++|+++||+.|.. ...|++
T Consensus 27 vvLVvf~AS~C~~~~q-~~~L~~ 48 (183)
T PRK10606 27 VLLIVNVASKCGLTPQ-YEQLEN 48 (183)
T ss_pred EEEEEEEeCCCCCcHH-HHHHHH
Confidence 3477899999999974 333443
No 274
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=86.34 E-value=1.2 Score=31.09 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=15.0
Q ss_pred EEEEE-eCCChhHHHHHHHHHhc
Q 032791 49 IVIFS-KSYCPYCLRAKRIFADL 70 (133)
Q Consensus 49 Vviy~-~~~Cp~C~~ak~~L~~~ 70 (133)
|+.|+ ..|||.|......|.++
T Consensus 33 vl~F~~~~~c~~C~~~l~~l~~~ 55 (173)
T cd03015 33 VLFFYPLDFTFVCPTEIIAFSDR 55 (173)
T ss_pred EEEEECCCCCCcCHHHHHHHHHH
Confidence 44455 68999999766666543
No 275
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.16 E-value=2.5 Score=34.60 Aligned_cols=69 Identities=20% Similarity=0.352 Sum_probs=45.7
Q ss_pred eCCChhHHHHHHHHHhcCCC-CeEEEEcCCCCHHHHHHHHHH---HcCC--CcccEEE---E----CCeEeeccHHHHHH
Q 032791 54 KSYCPYCLRAKRIFADLNEQ-PFVVELDLRDDGAQIQYILLD---LVGR--RTVPQIF---V----NGEHIGGADDLKAA 120 (133)
Q Consensus 54 ~~~Cp~C~~ak~~L~~~~~~-~~~~~id~~~~~~~~~~~l~~---~~g~--~~vP~vf---i----~G~~igG~~~l~~~ 120 (133)
+.+|||=.++.-+-+.+..+ |.|.-.-+..++++..+.|.+ ..|+ ..-|.|. + .|..+||++|+.++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 36899999998887776422 223333445555555555544 4554 5779994 4 56799999999888
Q ss_pred HH
Q 032791 121 VL 122 (133)
Q Consensus 121 ~~ 122 (133)
.+
T Consensus 81 ~~ 82 (452)
T cd05295 81 AE 82 (452)
T ss_pred HH
Confidence 64
No 276
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=86.15 E-value=2.4 Score=28.40 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=31.8
Q ss_pred CChhHH-----------HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEe
Q 032791 56 YCPYCL-----------RAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (133)
Q Consensus 56 ~Cp~C~-----------~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~i 111 (133)
+|+-|. ..++.|..+|+.+.+.++.+... ++...+ -+.|.|.|||+.|
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~------~~~~~~--~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE------EFARQP--LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH------HHhhcc--cCCCeeeECCEeh
Confidence 788886 44555777787766666655543 222222 6789999999977
No 277
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=85.28 E-value=1.3 Score=31.95 Aligned_cols=21 Identities=24% Similarity=0.708 Sum_probs=17.3
Q ss_pred CCcEEEEEeCCChhHHHHHHH
Q 032791 46 SNKIVIFSKSYCPYCLRAKRI 66 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~ 66 (133)
...|+.|..-+||+|.+....
T Consensus 38 ~~~VvEffdy~CphC~~~~~~ 58 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEV 58 (207)
T ss_pred CCeEEEEeCCCCccHHHhccc
Confidence 456999999999999986643
No 278
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.74 E-value=6.4 Score=28.82 Aligned_cols=70 Identities=11% Similarity=0.037 Sum_probs=51.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
...+++-+..+.|.-++.+|.-.++. |++..+..... ...++..+....+|.+-|||..|.-...+..+.
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~--fEd~r~~~~~~--w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVS--FEDKRITMEDA--WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCC--cceeeeccccc--hhhhcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence 34566668889999999999999986 35555544321 345666677889999999999887766665554
No 279
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=84.62 E-value=1.2 Score=31.21 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=18.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
+|++|+...||+|-.+...|.++
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l 23 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKL 23 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHH
Confidence 48899999999998776665554
No 280
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=84.17 E-value=7 Score=26.38 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=11.1
Q ss_pred EEEEEe-CCChhHHHHHHHH
Q 032791 49 IVIFSK-SYCPYCLRAKRIF 67 (133)
Q Consensus 49 Vviy~~-~~Cp~C~~ak~~L 67 (133)
++.|+. .+||.|......|
T Consensus 34 ll~f~~~~~~p~C~~~~~~l 53 (154)
T PRK09437 34 LVYFYPKAMTPGCTVQACGL 53 (154)
T ss_pred EEEEECCCCCCchHHHHHHH
Confidence 444543 4799997544433
No 281
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=83.61 E-value=2.3 Score=29.69 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=21.1
Q ss_pred HHHcCCCcccEEEECCe-EeeccHHHHH
Q 032791 93 LDLVGRRTVPQIFVNGE-HIGGADDLKA 119 (133)
Q Consensus 93 ~~~~g~~~vP~vfi~G~-~igG~~~l~~ 119 (133)
....|..++|+++|||+ .+-|.+.+..
T Consensus 160 a~~~gv~GvP~~vv~g~~~~~G~~~~~~ 187 (193)
T PF01323_consen 160 ARQLGVFGVPTFVVNGKYRFFGADRLDE 187 (193)
T ss_dssp HHHTTCSSSSEEEETTTEEEESCSSHHH
T ss_pred HHHcCCcccCEEEECCEEEEECCCCHHH
Confidence 34569999999999999 7778765533
No 282
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=82.95 E-value=0.36 Score=36.01 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=40.4
Q ss_pred HhhccCCcEEEEEeCCChhHHHHHHHHHhcC-----CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEE--ECCe
Q 032791 41 QNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIF--VNGE 109 (133)
Q Consensus 41 ~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~-----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf--i~G~ 109 (133)
.+.+...=.++|++||||.|..-+..|...- +...+-++|+..+ .-|.-++-....|+|+ .+|.
T Consensus 35 ~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n-----pgLsGRF~vtaLptIYHvkDGe 105 (248)
T KOG0913|consen 35 KELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN-----PGLSGRFLVTALPTIYHVKDGE 105 (248)
T ss_pred hhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec-----cccceeeEEEecceEEEeeccc
Confidence 3344344478899999999999999998863 2112445566544 2233233356789995 4675
No 283
>PRK13190 putative peroxiredoxin; Provisional
Probab=82.74 E-value=2.5 Score=30.48 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=13.1
Q ss_pred EEeCCChhHHHHHHHHHh
Q 032791 52 FSKSYCPYCLRAKRIFAD 69 (133)
Q Consensus 52 y~~~~Cp~C~~ak~~L~~ 69 (133)
|..+|||.|..-...|.+
T Consensus 35 ~p~~~cp~C~~El~~l~~ 52 (202)
T PRK13190 35 HPADFTPVCTTEFIAFSR 52 (202)
T ss_pred EcCCCCCCCHHHHHHHHH
Confidence 677999999865555543
No 284
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=82.22 E-value=0.91 Score=32.82 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=16.1
Q ss_pred HHcCCCcccEEEECCeEeec
Q 032791 94 DLVGRRTVPQIFVNGEHIGG 113 (133)
Q Consensus 94 ~~~g~~~vP~vfi~G~~igG 113 (133)
+..|.+++|+++|||+++-+
T Consensus 161 ~~~gI~gtPtfiInGky~v~ 180 (207)
T PRK10954 161 ADLQLRGVPAMFVNGKYMVN 180 (207)
T ss_pred HHcCCCCCCEEEECCEEEEc
Confidence 34577899999999998654
No 285
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=82.09 E-value=6.7 Score=28.59 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=30.4
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHH
Q 032791 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQY 90 (133)
Q Consensus 45 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~ 90 (133)
...++.+|.+..||.|......+..-+-...+.-++...+...++.
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~ 153 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQ 153 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHH
Confidence 4677999999999999877777766443222445564455444443
No 286
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=81.75 E-value=4.9 Score=29.90 Aligned_cols=90 Identities=14% Similarity=0.227 Sum_probs=51.6
Q ss_pred HHHHHHhhccCCc-EEEEEeCCChhHHHHHHHHHhcCCCC-e--EEEEcCCCCHHHHHHHHHHHcCCCcccEEEE--CCe
Q 032791 36 VSAFVQNSIFSNK-IVIFSKSYCPYCLRAKRIFADLNEQP-F--VVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGE 109 (133)
Q Consensus 36 ~~~~~~~~~~~~~-Vviy~~~~Cp~C~~ak~~L~~~~~~~-~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~G~ 109 (133)
..+.+..-.+... +|..+-++-+-|......+.-+...+ . |..+..... .....+....+|++.| ||+
T Consensus 149 fld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~------gas~~F~~n~lP~LliYkgGe 222 (273)
T KOG3171|consen 149 FLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT------GASDRFSLNVLPTLLIYKGGE 222 (273)
T ss_pred HHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc------cchhhhcccCCceEEEeeCCc
Confidence 3333333333333 33455588888888877776665332 1 343333222 1223345678998865 999
Q ss_pred EeeccHHHHHH----HHcChHHHhhc
Q 032791 110 HIGGADDLKAA----VLSGQLQQLLG 131 (133)
Q Consensus 110 ~igG~~~l~~~----~~~g~L~~~L~ 131 (133)
.||+|-.+.+. +-.|.|.+.|+
T Consensus 223 LIgNFv~va~qlgedffa~dle~FL~ 248 (273)
T KOG3171|consen 223 LIGNFVSVAEQLGEDFFAGDLESFLN 248 (273)
T ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 99998765443 34467777764
No 287
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=80.10 E-value=4.1 Score=29.32 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=13.2
Q ss_pred EEEeCCChhHHHHHHHHHh
Q 032791 51 IFSKSYCPYCLRAKRIFAD 69 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~ 69 (133)
.|..+|||.|..-...|.+
T Consensus 32 ~~pa~~cp~C~~el~~l~~ 50 (203)
T cd03016 32 SHPADFTPVCTTELGAFAK 50 (203)
T ss_pred EecCCCCCcCHHHHHHHHH
Confidence 3667899999875554444
No 288
>PRK13599 putative peroxiredoxin; Provisional
Probab=80.09 E-value=3.5 Score=30.18 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=12.8
Q ss_pred EEEeCCChhHHHHHHHHHh
Q 032791 51 IFSKSYCPYCLRAKRIFAD 69 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~ 69 (133)
.|...|||.|..-...|.+
T Consensus 35 ~~pa~~tpvCt~El~~l~~ 53 (215)
T PRK13599 35 SHPADFTPVCTTEFVEFAR 53 (215)
T ss_pred EeCCCCCCcCHHHHHHHHH
Confidence 4566899999865544443
No 289
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=78.50 E-value=19 Score=24.74 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=44.1
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCC-c--ccEEEE-CCeEeeccHHHHHH
Q 032791 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRR-T--VPQIFV-NGEHIGGADDLKAA 120 (133)
Q Consensus 45 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~-~--vP~vfi-~G~~igG~~~l~~~ 120 (133)
++...+|++.-.||.|...+++|.++.....+...++..+.. ..+.+..|.. . -=.+++ +|..+-|.|.+.+.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g---~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i 82 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPG---QALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRI 82 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchh---hhHHhhcCCChhhhheeeEecCCceEeccHHHHHH
Confidence 455678888899999999999998885333345555544322 2333444432 1 112344 67777777765543
No 290
>PRK13189 peroxiredoxin; Provisional
Probab=77.68 E-value=4.9 Score=29.53 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=12.1
Q ss_pred EEEeCCChhHHHHHHHHH
Q 032791 51 IFSKSYCPYCLRAKRIFA 68 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~ 68 (133)
.|..+|||.|..-...|.
T Consensus 42 f~pa~fcpvC~tEl~~l~ 59 (222)
T PRK13189 42 SHPADFTPVCTTEFVAFQ 59 (222)
T ss_pred EeCCCCCCCCHHHHHHHH
Confidence 356789999986444443
No 291
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=77.32 E-value=1.6 Score=33.28 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=55.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHc
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLS 123 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~ 123 (133)
..++|.-|..=..++++-.+.+.++.++-..+|... +++..+.+...+....||++.-+...|-..++|+.+.+.
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~-geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQ-GEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCcc-ccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 378899999999999999999999884433333322 244445666666778899887777778889999998776
No 292
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=76.83 E-value=12 Score=25.79 Aligned_cols=18 Identities=33% Similarity=0.752 Sum_probs=11.9
Q ss_pred CCcEEEEEe--CCChhHHHH
Q 032791 46 SNKIVIFSK--SYCPYCLRA 63 (133)
Q Consensus 46 ~~~Vviy~~--~~Cp~C~~a 63 (133)
..++++|.- .+||.|..-
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred CCcEEEEEeCCCCCCCCchh
Confidence 445666555 469999754
No 293
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=74.73 E-value=4.7 Score=27.68 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=16.3
Q ss_pred HHcCCCcccEEEECCeEeec
Q 032791 94 DLVGRRTVPQIFVNGEHIGG 113 (133)
Q Consensus 94 ~~~g~~~vP~vfi~G~~igG 113 (133)
...|..++|+++|||+.+-+
T Consensus 137 ~~~gi~gTPt~iInG~~~~~ 156 (178)
T cd03019 137 KKYKITGVPAFVVNGKYVVN 156 (178)
T ss_pred HHcCCCCCCeEEECCEEEEC
Confidence 45689999999999987643
No 294
>PRK13191 putative peroxiredoxin; Provisional
Probab=74.66 E-value=6.3 Score=28.80 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=14.0
Q ss_pred EEEeCCChhHHHHHHHHHhc
Q 032791 51 IFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~ 70 (133)
.|..+|||.|..-...|.++
T Consensus 40 f~pa~ftpvC~tEl~~l~~~ 59 (215)
T PRK13191 40 SHPGDFTPVCTTEFYSFAKK 59 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHH
Confidence 45678999998765555443
No 295
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=74.61 E-value=6.6 Score=24.97 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=22.8
Q ss_pred HHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcC
Q 032791 37 SAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN 71 (133)
Q Consensus 37 ~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~ 71 (133)
++.+.++..+-.+++|+.+. ++|..++++|++..
T Consensus 11 ~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a 44 (94)
T cd02974 11 KAYLERLENPVELVASLDDS-EKSAELLELLEEIA 44 (94)
T ss_pred HHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHH
Confidence 33333333344456677766 99999999998874
No 296
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=73.98 E-value=9.8 Score=26.73 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=17.9
Q ss_pred HHcCCCcccEEEECCe-EeeccHHH
Q 032791 94 DLVGRRTVPQIFVNGE-HIGGADDL 117 (133)
Q Consensus 94 ~~~g~~~vP~vfi~G~-~igG~~~l 117 (133)
...|..++|+++|||+ .+.|....
T Consensus 169 ~~~gv~G~Pt~vv~g~~~~~G~~~~ 193 (201)
T cd03024 169 RQLGISGVPFFVFNGKYAVSGAQPP 193 (201)
T ss_pred HHCCCCcCCEEEECCeEeecCCCCH
Confidence 3458999999999987 45665544
No 297
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.89 E-value=18 Score=31.20 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=34.3
Q ss_pred EEeCCChhHHH----------HHHHHHhcCCCCeEEEEcC--CCCHHHHHH-HHHHHcCCCcccEEEE---CCeEe
Q 032791 52 FSKSYCPYCLR----------AKRIFADLNEQPFVVELDL--RDDGAQIQY-ILLDLVGRRTVPQIFV---NGEHI 111 (133)
Q Consensus 52 y~~~~Cp~C~~----------ak~~L~~~~~~~~~~~id~--~~~~~~~~~-~l~~~~g~~~vP~vfi---~G~~i 111 (133)
.+.++|.+|+- +-++|.+.-+ -+.+|. .++-+.+.. ..+..+|+.+.|..++ ||+++
T Consensus 50 IGys~CHWChVM~~ESf~d~eiA~~lN~~FV---~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 50 IGYSTCHWCHVMAHESFEDPEIAAILNENFV---PVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPF 122 (667)
T ss_pred eccccccchHHHhhhcCCCHHHHHHHHhCce---eeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCcee
Confidence 56689999984 3444555433 255555 344444433 4455678889997644 66654
No 298
>PRK15000 peroxidase; Provisional
Probab=73.41 E-value=13 Score=26.83 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=14.4
Q ss_pred CCcEEEEEeC--CChhHHHHHHHHHh
Q 032791 46 SNKIVIFSKS--YCPYCLRAKRIFAD 69 (133)
Q Consensus 46 ~~~Vviy~~~--~Cp~C~~ak~~L~~ 69 (133)
...+++|.-| +||.|..-..-|.+
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~ 59 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDK 59 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHH
Confidence 3345554444 79999875555544
No 299
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=73.28 E-value=3.7 Score=26.67 Aligned_cols=16 Identities=31% Similarity=0.827 Sum_probs=14.1
Q ss_pred cEEEEEeCCChhHHHH
Q 032791 48 KIVIFSKSYCPYCLRA 63 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~a 63 (133)
+|.+|+.+-||+|++.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5889999999999873
No 300
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=72.45 E-value=31 Score=24.29 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=44.0
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHc--C--------------------CCcccEE--E
Q 032791 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLV--G--------------------RRTVPQI--F 105 (133)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~--g--------------------~~~vP~v--f 105 (133)
++=++++-+.-+++...|+++++.++..-+.-+..++.+.++.+... | ...+|+| -
T Consensus 8 IMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVP 87 (162)
T COG0041 8 IMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVP 87 (162)
T ss_pred EecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEecc
Confidence 33344667888999999999999755444455666665555443321 1 1356666 3
Q ss_pred ECCeEeeccHHHHH
Q 032791 106 VNGEHIGGADDLKA 119 (133)
Q Consensus 106 i~G~~igG~~~l~~ 119 (133)
+..+.++|.|.|..
T Consensus 88 v~s~~L~GlDSL~S 101 (162)
T COG0041 88 VQSKALSGLDSLLS 101 (162)
T ss_pred CccccccchHHHHH
Confidence 46667777776643
No 301
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=71.27 E-value=13 Score=28.28 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=14.2
Q ss_pred cCCcEEEE--EeCCChhHHHHHHHH
Q 032791 45 FSNKIVIF--SKSYCPYCLRAKRIF 67 (133)
Q Consensus 45 ~~~~Vviy--~~~~Cp~C~~ak~~L 67 (133)
....+++| -..|||.|..-...|
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l 121 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGF 121 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH
Confidence 34455555 358999998644443
No 302
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=70.73 E-value=3.2 Score=29.03 Aligned_cols=23 Identities=17% Similarity=0.582 Sum_probs=18.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
+|.+|+.+.||+|-.+.+.|+++
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l 24 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKL 24 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHH
Confidence 48899999999997666666543
No 303
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=70.11 E-value=35 Score=26.82 Aligned_cols=93 Identities=12% Similarity=0.024 Sum_probs=63.3
Q ss_pred cccchhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCCeE-----------EEEcCCCCHHHHHHHHHHHcC
Q 032791 29 ATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFV-----------VELDLRDDGAQIQYILLDLVG 97 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~-----------~~id~~~~~~~~~~~l~~~~g 97 (133)
....+=.+.+++.++++.+=+.||+-.++..+..+..+.+++++ |++ ..+...++-....-.+.+.+|
T Consensus 45 ~~~dsf~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~I-P~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~~~ 123 (371)
T cd06388 45 ETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHI-SLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYE 123 (371)
T ss_pred CCCChhHHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCC-CeeecCccccCCCceEEEeChhhhhHHHHHHHhcC
Confidence 44556677788889998888899999999999999999999987 442 112222221111223456678
Q ss_pred CCcccEEEECCeEeeccHHHHHHHH
Q 032791 98 RRTVPQIFVNGEHIGGADDLKAAVL 122 (133)
Q Consensus 98 ~~~vP~vfi~G~~igG~~~l~~~~~ 122 (133)
++++=.++..+..++..+++.+..+
T Consensus 124 wk~vaiiYd~~~~~~~lq~l~~~~~ 148 (371)
T cd06388 124 WNRFVFLYDTDRGYSILQAIMEKAG 148 (371)
T ss_pred ceEEEEEecCCccHHHHHHHHHhhH
Confidence 9998777765665666666655543
No 304
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=69.75 E-value=21 Score=25.04 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=46.0
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHc----------------------CCCcccEEE--E
Q 032791 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLV----------------------GRRTVPQIF--V 106 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~----------------------g~~~vP~vf--i 106 (133)
+=++++=|.++++...|+++|+.+.+.-.-.+..++.+.+.++... +..++|.|= +
T Consensus 5 mGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~ 84 (156)
T TIGR01162 5 MGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPV 84 (156)
T ss_pred ECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEecC
Confidence 3344677999999999999999754444455666666666555422 124566662 2
Q ss_pred CCeEeeccHHHHHHHH
Q 032791 107 NGEHIGGADDLKAAVL 122 (133)
Q Consensus 107 ~G~~igG~~~l~~~~~ 122 (133)
.....+|.|.+....+
T Consensus 85 ~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 85 PSKALSGLDSLLSIVQ 100 (156)
T ss_pred CccCCCCHHHHHHHhc
Confidence 4445677777766554
No 305
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=69.58 E-value=39 Score=26.42 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=36.1
Q ss_pred EeCCChhHHHHHHHHHhcCC---CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHH
Q 032791 53 SKSYCPYCLRAKRIFADLNE---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDL 117 (133)
Q Consensus 53 ~~~~Cp~C~~ak~~L~~~~~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l 117 (133)
.--+|+.|.|++.+|+.+.. ...|+-+|++.+ .++...... ....+|.|-+.| .+|.|++.
T Consensus 81 IELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~--~L~~a~~~L-~~~~~p~l~v~~-l~gdy~~~ 144 (319)
T TIGR03439 81 VELGSGNLRKVGILLEALERQKKSVDYYALDVSRS--ELQRTLAEL-PLGNFSHVRCAG-LLGTYDDG 144 (319)
T ss_pred EEECCCchHHHHHHHHHHHhcCCCceEEEEECCHH--HHHHHHHhh-hhccCCCeEEEE-EEecHHHH
Confidence 35789999999999988741 223789999753 333333332 123456555544 34444443
No 306
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=69.52 E-value=5.2 Score=29.30 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=19.8
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
...+++|....||+|++..+-+.+.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~ 109 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKK 109 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHH
Confidence 3458889999999998777777663
No 307
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=68.33 E-value=10 Score=27.12 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=13.4
Q ss_pred EEEEE-eCCChhHHHHHHHHHh
Q 032791 49 IVIFS-KSYCPYCLRAKRIFAD 69 (133)
Q Consensus 49 Vviy~-~~~Cp~C~~ak~~L~~ 69 (133)
|+.|+ ..|||.|..-...|.+
T Consensus 35 vL~F~P~~~~p~C~~el~~l~~ 56 (187)
T PRK10382 35 VFFFYPADFTFVCPTELGDVAD 56 (187)
T ss_pred EEEEECCCCCCcCHHHHHHHHH
Confidence 44445 6899999875444433
No 308
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=67.83 E-value=25 Score=25.06 Aligned_cols=19 Identities=16% Similarity=0.355 Sum_probs=10.0
Q ss_pred EEEEEe-CCChhHHHHHHHH
Q 032791 49 IVIFSK-SYCPYCLRAKRIF 67 (133)
Q Consensus 49 Vviy~~-~~Cp~C~~ak~~L 67 (133)
++.|+. .+||.|.....-|
T Consensus 40 lL~F~p~~~~~~C~~e~~~l 59 (199)
T PTZ00253 40 VLFFYPLDFTFVCPTEIIQF 59 (199)
T ss_pred EEEEEcCCCCCcCHHHHHHH
Confidence 444552 5677776543333
No 309
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=66.42 E-value=17 Score=23.55 Aligned_cols=69 Identities=23% Similarity=0.304 Sum_probs=38.9
Q ss_pred hHHHHHHhhccCCcEEEEEeCCChhH-HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEee
Q 032791 35 SVSAFVQNSIFSNKIVIFSKSYCPYC-LRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (133)
Q Consensus 35 ~~~~~~~~~~~~~~Vviy~~~~Cp~C-~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~ig 112 (133)
.+.+.+..+...-+ +| .|-.| .+++++|.+.++...++.+......+.. ...+.++.. -.|-.||.|.|
T Consensus 4 ~~~Q~I~~I~~~f~--~~---qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~--I~sd~~~~~--~sIt~NG~H~g 73 (100)
T PF15643_consen 4 EVRQQIGKIASRFK--IF---QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPF--IYSDRLGPQ--ESITTNGRHYG 73 (100)
T ss_pred HHHHHHHHhhcccC--ce---ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCce--ehhhhhcCC--cceeeCCEEEE
Confidence 34555555554433 33 59999 4678889999987667777763221111 112222222 45667777665
No 310
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=66.13 E-value=31 Score=27.31 Aligned_cols=92 Identities=11% Similarity=0.036 Sum_probs=62.3
Q ss_pred cccchhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEE-----------EEcCCCCHHHHHHHHHHHcC
Q 032791 29 ATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVV-----------ELDLRDDGAQIQYILLDLVG 97 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~-----------~id~~~~~~~~~~~l~~~~g 97 (133)
....+=.+.+++.+++..+=+.||+-+.|..-..+..+.+.+.+ |++. .++..++-......+-+.+|
T Consensus 45 ~~~dsf~~~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~i-P~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~~~ 123 (372)
T cd06387 45 DSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHT-SFITPSFPTDADVQFVIQMRPALKGAILSLLAHYK 123 (372)
T ss_pred cCCChHHHHHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccC-CeeeeCCCCCCCCceEEEEChhHHHHHHHHHHhcC
Confidence 34556667788889999998999999999888888888888887 4421 22333332222334455689
Q ss_pred CCcccEEEECCeEeeccHHHHHHH
Q 032791 98 RRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 98 ~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
|+.+=.|+-++..++...++.+..
T Consensus 124 Wr~~~~iYd~d~gl~~Lq~L~~~~ 147 (372)
T cd06387 124 WEKFVYLYDTERGFSILQAIMEAA 147 (372)
T ss_pred CCEEEEEecCchhHHHHHHHHHhh
Confidence 999988886666555555555443
No 311
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=65.33 E-value=65 Score=25.28 Aligned_cols=92 Identities=10% Similarity=0.136 Sum_probs=58.4
Q ss_pred cccchhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEE------------------------EcCCCC
Q 032791 29 ATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVE------------------------LDLRDD 84 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~------------------------id~~~~ 84 (133)
....+..+...+.+++...-+.|++..+|+.|..+..++++.++ |++.. +...++
T Consensus 44 d~~d~~~a~~~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~I-P~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~rp~ 122 (363)
T cd06381 44 DLNNHFDAVQEACDLMNQGILALVTSTGCASAIALQSLTDAMHI-PHLFIQRGYGGSPRTACGLNPSPRGQQYTLALRPP 122 (363)
T ss_pred cCCChHHHHHHHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCC-CEEEeecCcCCCcccccccCCCcccceeEEEEecc
Confidence 33556777788888887755678998999999999999999876 44221 011122
Q ss_pred --HHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHH
Q 032791 85 --GAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 85 --~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
.......+.+.+|++.+=.++.+.....|..++.+..
T Consensus 123 ~~~~~ai~~lv~~~~wkkvavly~~d~g~~~l~~~~~~~ 161 (363)
T cd06381 123 VRLNDVMLRLVTEWRWQKFVYFYDNDYDIRGLQEFLDQL 161 (363)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEECCchHHHHHHHHHHH
Confidence 1222234455678888876666665444455554443
No 312
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=64.78 E-value=51 Score=24.58 Aligned_cols=70 Identities=9% Similarity=0.077 Sum_probs=46.2
Q ss_pred chhhHHHHHHhhccCCcEEEEEeC-----CChhHHHHHHHHHhcC---C-CCeEEEEcCCCCHHHHHHHHHHHcCCCccc
Q 032791 32 ADHSVSAFVQNSIFSNKIVIFSKS-----YCPYCLRAKRIFADLN---E-QPFVVELDLRDDGAQIQYILLDLVGRRTVP 102 (133)
Q Consensus 32 ~~~~~~~~~~~~~~~~~Vviy~~~-----~Cp~C~~ak~~L~~~~---~-~~~~~~id~~~~~~~~~~~l~~~~g~~~vP 102 (133)
-++...+.++++-.+-.|.+|..+ .-++=..++.+|+++. - +..+..+|...++... +.....+|...++
T Consensus 12 LS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~-~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 12 LSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEA-EEKAKEYGIQPVQ 90 (271)
T ss_pred CCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHH-HHHHHhcCCCccc
Confidence 356677777887777788889887 5677788899998873 1 2226777876654443 4445556655533
No 313
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=63.42 E-value=37 Score=21.81 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=30.6
Q ss_pred cchhHHHHHHhhhHH-HhhhcCCCCCcccchhhHHHHHHhhccCCcEEEEEeC----CChhHHHHHHHHHhcCCCCe
Q 032791 4 RGWQSRFLVEAVGLL-FFLLLGNAPTATEADHSVSAFVQNSIFSNKIVIFSKS----YCPYCLRAKRIFADLNEQPF 75 (133)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vviy~~~----~Cp~C~~ak~~L~~~~~~~~ 75 (133)
..|+|.+++...++. +.--|+--|+. +.+-.+.. .-+.-.++...|++.++.+.
T Consensus 5 p~WKyllil~vl~~~~lyALPnlyge~------------------pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k 63 (101)
T PF13721_consen 5 PLWKYLLILVVLLLGALYALPNLYGED------------------PAVQISASSAGVQLPDAFQVEQALKAAGIAVK 63 (101)
T ss_pred chHHHHHHHHHHHHHHHHHhhhccCCC------------------CcEEEecCCCCccCChHHHHHHHHHHCCCCcc
Confidence 469999988877664 33334444431 11111110 11223588889999887654
No 314
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.12 E-value=27 Score=27.36 Aligned_cols=54 Identities=24% Similarity=0.499 Sum_probs=35.4
Q ss_pred EEEEEe----CCChhHHHHHHHHHhcC---------C---CCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEEC
Q 032791 49 IVIFSK----SYCPYCLRAKRIFADLN---------E---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN 107 (133)
Q Consensus 49 Vviy~~----~~Cp~C~~ak~~L~~~~---------~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~ 107 (133)
|++|++ ..|+-|+.+.+-++-.. - +-++-.+|.++.+ ...+..+.+++|.+++=
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p-----~~Fq~l~ln~~P~l~~f 133 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP-----QVFQQLNLNNVPHLVLF 133 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH-----HHHHHhcccCCCeEEEe
Confidence 677777 47999998877665431 1 1136677777653 23344578899999873
No 315
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=61.34 E-value=26 Score=24.37 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=29.8
Q ss_pred cEEEEEe--CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHH
Q 032791 48 KIVIFSK--SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDL 95 (133)
Q Consensus 48 ~Vviy~~--~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~ 95 (133)
+|.|... ++=|+|+++...|+++++.+.+.-.-.+..++.+.+.++..
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 3444443 45689999999999999753333334466666666666554
No 316
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=60.34 E-value=65 Score=23.57 Aligned_cols=83 Identities=25% Similarity=0.330 Sum_probs=52.2
Q ss_pred ccchhhHHHHHHhhccCCc--EEEEEeCCChhHHHHHHHHHhc-CCCCeEEEEcCC---CCHHHHHHHHHHHcCCCcccE
Q 032791 30 TEADHSVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIFADL-NEQPFVVELDLR---DDGAQIQYILLDLVGRRTVPQ 103 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~--Vviy~~~~Cp~C~~ak~~L~~~-~~~~~~~~id~~---~~~~~~~~~l~~~~g~~~vP~ 103 (133)
.++..++++.+..++.+.. +.-|. .+.++|... ...|-++-+|+. .++.++++.|... ....|.
T Consensus 10 VDDD~~vr~al~~Ll~s~G~~v~~~~--------s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~--~~~~PV 79 (202)
T COG4566 10 VDDDESVRDALAFLLESAGFQVKCFA--------SAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAER--GIRLPV 79 (202)
T ss_pred EcCcHHHHHHHHHHHHhCCceeeeec--------CHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhc--CCCCCE
Confidence 3456677777777775544 55454 356777775 233446777763 3567777777764 678999
Q ss_pred EEECCeEeeccHHHHHHHHcC
Q 032791 104 IFVNGEHIGGADDLKAAVLSG 124 (133)
Q Consensus 104 vfi~G~~igG~~~l~~~~~~g 124 (133)
||+-|+ |...-..+..+.|
T Consensus 80 IfiTGh--gDIpmaV~AmK~G 98 (202)
T COG4566 80 IFLTGH--GDIPMAVQAMKAG 98 (202)
T ss_pred EEEeCC--CChHHHHHHHHcc
Confidence 999886 3344444444444
No 317
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=59.72 E-value=58 Score=22.83 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=10.5
Q ss_pred CcEEEEEeC--CChhHH
Q 032791 47 NKIVIFSKS--YCPYCL 61 (133)
Q Consensus 47 ~~Vviy~~~--~Cp~C~ 61 (133)
.+||+|.-| ++|-|.
T Consensus 31 k~VVLyFYPk~~TpgCT 47 (157)
T COG1225 31 KPVVLYFYPKDFTPGCT 47 (157)
T ss_pred CcEEEEECCCCCCCcch
Confidence 368887764 678884
No 318
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=59.48 E-value=54 Score=22.39 Aligned_cols=70 Identities=16% Similarity=0.346 Sum_probs=38.5
Q ss_pred HHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcC--CCCe--EEEEcCCCCHHHHHHHHHHHcCCCcccE---EEECC
Q 032791 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN--EQPF--VVELDLRDDGAQIQYILLDLVGRRTVPQ---IFVNG 108 (133)
Q Consensus 36 ~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~--~~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~---vfi~G 108 (133)
+.+++..-...--|+=|+.+|-|.|.+.-+.|.+.. +..+ +.-+|+.+.++ ...+-+.+ -|. +|.++
T Consensus 11 VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd--fn~~yel~----dP~tvmFF~rn 84 (133)
T PF02966_consen 11 VDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD--FNQMYELY----DPCTVMFFFRN 84 (133)
T ss_dssp HHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC--CHHHTTS-----SSEEEEEEETT
T ss_pred HHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh--hhcccccC----CCeEEEEEecC
Confidence 334444333222245699999999999999987753 2222 45567765522 12222232 343 25599
Q ss_pred eEe
Q 032791 109 EHI 111 (133)
Q Consensus 109 ~~i 111 (133)
+|+
T Consensus 85 khm 87 (133)
T PF02966_consen 85 KHM 87 (133)
T ss_dssp EEE
T ss_pred eEE
Confidence 887
No 319
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=59.46 E-value=22 Score=23.24 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=42.7
Q ss_pred hhHHHHHHhhccCCcEEEEEeCC---ChhHHHHHHHHHhcCCCCe-EEEEcCCCCHHHHHHHHHHHcCCCcccEEE--EC
Q 032791 34 HSVSAFVQNSIFSNKIVIFSKSY---CPYCLRAKRIFADLNEQPF-VVELDLRDDGAQIQYILLDLVGRRTVPQIF--VN 107 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~~~---Cp~C~~ak~~L~~~~~~~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vf--i~ 107 (133)
++....+.. ....++|.... ||.+..+--+|-++-.... ....-+.. .+...+|+..+|....|.+. -+
T Consensus 17 ~~ld~~l~~---~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~ 91 (107)
T PF07449_consen 17 DTLDAFLAA---PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRD 91 (107)
T ss_dssp CCHHHHHHC---CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEET
T ss_pred hhHHHHHhC---CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEEC
Confidence 334444443 44566666654 5666665556555421110 01111111 33467899999999999984 49
Q ss_pred CeEeeccH
Q 032791 108 GEHIGGAD 115 (133)
Q Consensus 108 G~~igG~~ 115 (133)
|+++|...
T Consensus 92 g~~lG~i~ 99 (107)
T PF07449_consen 92 GRYLGAIE 99 (107)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEec
Confidence 99998654
No 320
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=59.21 E-value=7.4 Score=29.38 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=18.2
Q ss_pred ccCCc--EEEEEeCCChhHHHHHHH----HHhcC
Q 032791 44 IFSNK--IVIFSKSYCPYCLRAKRI----FADLN 71 (133)
Q Consensus 44 ~~~~~--Vviy~~~~Cp~C~~ak~~----L~~~~ 71 (133)
...+| |+..+..|||+|...+-. |.+.|
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 34455 444555789999877665 45666
No 321
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=58.61 E-value=11 Score=26.24 Aligned_cols=22 Identities=23% Similarity=0.313 Sum_probs=17.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
|.+|+..-||+|--+...|+++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~ 22 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPAL 22 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHH
Confidence 4589999999998777666654
No 322
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.19 E-value=7.5 Score=28.90 Aligned_cols=25 Identities=32% Similarity=0.665 Sum_probs=18.6
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~ 70 (133)
..+|.+|+..-||+|---++-|++.
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHH
Confidence 3458889999999997666666554
No 323
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.22 E-value=5.7 Score=33.56 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=29.8
Q ss_pred cccchhHHHHHHhhhHHHhhhcCCCCCcccchhhHHHHHH
Q 032791 2 KKRGWQSRFLVEAVGLLFFLLLGNAPTATEADHSVSAFVQ 41 (133)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (133)
|||||+--..++.+.|++|.-..-++..+-..+++..++.
T Consensus 528 GkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavs 567 (774)
T KOG0932|consen 528 GKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVS 567 (774)
T ss_pred cchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhh
Confidence 8999999999998888888877777665555555555443
No 324
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=56.94 E-value=65 Score=22.74 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=40.3
Q ss_pred hhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCC----------CeEEEEcCCCC-HHHHHHHHHHHcCCCccc
Q 032791 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ----------PFVVELDLRDD-GAQIQYILLDLVGRRTVP 102 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~----------~~~~~id~~~~-~~~~~~~l~~~~g~~~vP 102 (133)
.++.+.+.++.. ..+.+-.++.++.=.-|+++|+.+++. .++....+... -..-.+.+.+.+|.+--=
T Consensus 48 pdv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y~e 126 (169)
T PF12689_consen 48 PDVPEILQELKE-RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPYEE 126 (169)
T ss_dssp TTHHHHHHHHHH-CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---GGG
T ss_pred cCHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCChhH
Confidence 456666666654 445665566555559999999999876 33333344332 122245667778877666
Q ss_pred EEEECCe
Q 032791 103 QIFVNGE 109 (133)
Q Consensus 103 ~vfi~G~ 109 (133)
.+|+|++
T Consensus 127 MlFFDDe 133 (169)
T PF12689_consen 127 MLFFDDE 133 (169)
T ss_dssp EEEEES-
T ss_pred EEEecCc
Confidence 7888876
No 325
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=56.52 E-value=17 Score=29.90 Aligned_cols=33 Identities=6% Similarity=0.039 Sum_probs=22.4
Q ss_pred HHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcC
Q 032791 38 AFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN 71 (133)
Q Consensus 38 ~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~ 71 (133)
+.+.++..+-.+++|+. .|++|..++++|+++.
T Consensus 12 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (517)
T PRK15317 12 QYLELLERPIELVASLD-DSEKSAELKELLEEIA 44 (517)
T ss_pred HHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHHH
Confidence 33333333334555665 8999999999998874
No 326
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=56.48 E-value=49 Score=20.95 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=37.0
Q ss_pred hhHHHHHHhhccCCcEEEEEeCC-ChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcC
Q 032791 34 HSVSAFVQNSIFSNKIVIFSKSY-CPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVG 97 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~~~-Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g 97 (133)
..+.+.++.+.+.++-++|.+++ ...-....+.|+.+|+. +..=++........+.|++..+
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHHHHHHHHHhcCC
Confidence 34677788877665545455444 45557777778999975 1222334445666778887533
No 327
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=55.99 E-value=40 Score=26.72 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=42.7
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcC--CCCHHHHHHHHHHHcCCCcccEEEE--CC-eEeeccHHHHHH
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL--RDDGAQIQYILLDLVGRRTVPQIFV--NG-EHIGGADDLKAA 120 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~--~~~~~~~~~~l~~~~g~~~vP~vfi--~G-~~igG~~~l~~~ 120 (133)
..+.++|.+..+.+|. .+...-+|+....+.+|. ..+.+++++.+.+......+|.+++ -| ..-|.+|++.+.
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i 216 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEI 216 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHH
Confidence 4578999999999986 344444555422344443 2245667777776655666785443 44 455668877654
Q ss_pred H
Q 032791 121 V 121 (133)
Q Consensus 121 ~ 121 (133)
.
T Consensus 217 ~ 217 (373)
T PF00282_consen 217 A 217 (373)
T ss_dssp H
T ss_pred h
Confidence 3
No 328
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=54.81 E-value=64 Score=25.26 Aligned_cols=92 Identities=9% Similarity=0.081 Sum_probs=59.8
Q ss_pred cccchhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEE-----------EEcCCCCHHHHHHHHHHHcC
Q 032791 29 ATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVV-----------ELDLRDDGAQIQYILLDLVG 97 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~-----------~id~~~~~~~~~~~l~~~~g 97 (133)
....+=.+.+++.++++.+=+.||+-..+..+..+..+.+++++ |++. .+...++-....-.+.+.++
T Consensus 39 ~~~dsf~~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~I-P~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i~~~~ 117 (370)
T cd06389 39 EVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHV-SFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQ 117 (370)
T ss_pred cccchHHHHHHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCC-CeeeecCCCCCCCceEEEecchhhhHHHHHHHhcC
Confidence 33455667788888998888889998889999999999999886 4421 12222222222234445678
Q ss_pred CCcccEEEECCeEeeccHHHHHHH
Q 032791 98 RRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 98 ~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
++++=.++-++...+..+++.+..
T Consensus 118 wk~vailYdsd~gl~~lq~l~~~~ 141 (370)
T cd06389 118 WDKFAYLYDSDRGLSTLQAVLDSA 141 (370)
T ss_pred CcEEEEEecCchHHHHHHHHHHhh
Confidence 999877776544444455555544
No 329
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=54.26 E-value=98 Score=24.30 Aligned_cols=92 Identities=9% Similarity=0.028 Sum_probs=60.0
Q ss_pred cccchhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEE-----------EEcCCCCHHHHHHHHHHHcC
Q 032791 29 ATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVV-----------ELDLRDDGAQIQYILLDLVG 97 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~-----------~id~~~~~~~~~~~l~~~~g 97 (133)
....+=.+.+++.++++.+-+.||+-..|.--.-+..+.+++.+ |++. .++..++-...-..+-+.+|
T Consensus 38 ~~~dsf~~~~~~C~~~~~gV~AI~Gp~s~~~a~~v~sic~~~~v-P~i~~~~~~~~~~~~~i~~~P~~~~Ai~diI~~~~ 116 (364)
T cd06390 38 NISDSFEMTYTFCSQFSKGVYAIFGFYDRKTVNMLTSFCGALHV-CFITPSFPVDTSNQFVLQLRPELQDALISVIEHYK 116 (364)
T ss_pred ccccHHHHHHHHHHHhhcCceEEEccCChhHHHHHHHhhcCCCC-CceecCCCCCCCCceEEEeChhHHHHHHHHHHHcC
Confidence 44556667788888998888889997777777777777777776 4411 22333332223334555689
Q ss_pred CCcccEEEECCeEeeccHHHHHHH
Q 032791 98 RRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 98 ~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
++.+=.|+.++...++.+++.+..
T Consensus 117 W~~v~iIYd~d~g~~~lq~l~~~~ 140 (364)
T cd06390 117 WQKFVYIYDADRGLSVLQKVLDTA 140 (364)
T ss_pred CcEEEEEEeCCccHHHHHHHHHhh
Confidence 999988887665555666655544
No 330
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=53.11 E-value=86 Score=23.35 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=40.1
Q ss_pred hhhHHHHHHhhccC-CcEEEEE------eCCChhHHHHHHHHHhcCCCCeEEEEcCCCC-HHHHHHHHHHHcCCCcccEE
Q 032791 33 DHSVSAFVQNSIFS-NKIVIFS------KSYCPYCLRAKRIFADLNEQPFVVELDLRDD-GAQIQYILLDLVGRRTVPQI 104 (133)
Q Consensus 33 ~~~~~~~~~~~~~~-~~Vviy~------~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~-~~~~~~~l~~~~g~~~vP~v 104 (133)
.+.....+...+.. .+=+.|. ..+-+|-.++++.|+++|.. +.+++.... .+.+...|.+ .-.|
T Consensus 17 ~~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~--v~~L~l~~~~~~~Ie~~l~~------~d~I 88 (224)
T COG3340 17 LEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLE--VSELHLSKPPLAAIENKLMK------ADII 88 (224)
T ss_pred hhhhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCe--eeeeeccCCCHHHHHHhhhh------ccEE
Confidence 34455566664433 2333332 14568999999999999976 567777543 3444444443 2456
Q ss_pred EECC
Q 032791 105 FVNG 108 (133)
Q Consensus 105 fi~G 108 (133)
+|+|
T Consensus 89 yVgG 92 (224)
T COG3340 89 YVGG 92 (224)
T ss_pred EECC
Confidence 6655
No 331
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=52.14 E-value=13 Score=26.13 Aligned_cols=21 Identities=38% Similarity=0.795 Sum_probs=16.1
Q ss_pred EEEEEeCCChhHHHHHHHHHh
Q 032791 49 IVIFSKSYCPYCLRAKRIFAD 69 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~ 69 (133)
|.+|+..-||+|--+..-|++
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~ 21 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEK 21 (201)
T ss_pred CeEEecCcCccHHHHHHHHHH
Confidence 458999999999866666543
No 332
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=50.86 E-value=15 Score=21.65 Aligned_cols=13 Identities=46% Similarity=0.772 Sum_probs=10.6
Q ss_pred EEECCeEeeccHH
Q 032791 104 IFVNGEHIGGADD 116 (133)
Q Consensus 104 vfi~G~~igG~~~ 116 (133)
||+||..+|=.++
T Consensus 1 VFlNG~~iG~~~~ 13 (63)
T PF04566_consen 1 VFLNGVWIGIHSD 13 (63)
T ss_dssp EEETTEEEEEESS
T ss_pred CEECCEEEEEEcC
Confidence 7999999996544
No 333
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=50.00 E-value=25 Score=28.95 Aligned_cols=23 Identities=4% Similarity=0.085 Sum_probs=18.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLN 71 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~ 71 (133)
.+++|+. .|++|..++++|+++.
T Consensus 22 ~~~~~~~-~~~~~~~~~~~~~~~~ 44 (515)
T TIGR03140 22 TLVLSAG-SHEKSKELLELLDEIA 44 (515)
T ss_pred EEEEEeC-CCchhHHHHHHHHHHH
Confidence 3445665 7999999999998874
No 334
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=49.39 E-value=1.1e+02 Score=25.28 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=41.7
Q ss_pred cccchhhHHHHHHhhcc--CCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEc
Q 032791 29 ATEADHSVSAFVQNSIF--SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~--~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id 80 (133)
-+...+++.+.+.+++. ..+-++.+++-=..=.....+|++.|++ +.+.|
T Consensus 83 ~A~~aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~e--v~ETD 134 (459)
T COG1139 83 FAKDAEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIE--VWETD 134 (459)
T ss_pred EeCCHHHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCe--EEEcc
Confidence 45677889999999987 7889999999988889999999999975 45555
No 335
>PLN02590 probable tyrosine decarboxylase
Probab=48.53 E-value=86 Score=26.38 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=44.9
Q ss_pred CcEEEEEeCCChhHH-HHHHHHHhcCCCCeEEEEcC----CCCHHHHHHHHHHHcCCCcccEEEE---CCeEeeccHHHH
Q 032791 47 NKIVIFSKSYCPYCL-RAKRIFADLNEQPFVVELDL----RDDGAQIQYILLDLVGRRTVPQIFV---NGEHIGGADDLK 118 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~-~ak~~L~~~~~~~~~~~id~----~~~~~~~~~~l~~~~g~~~vP~vfi---~G~~igG~~~l~ 118 (133)
.++++|.+..+.+|. |+..+|.--......+.+|. ..+.+.+++.+.+-......|.+++ +-...|.+|++.
T Consensus 228 ~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~ 307 (539)
T PLN02590 228 PQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLV 307 (539)
T ss_pred CCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHH
Confidence 468999999999984 45544422111111345552 2456777777766444556787765 445667788776
Q ss_pred HHH
Q 032791 119 AAV 121 (133)
Q Consensus 119 ~~~ 121 (133)
+..
T Consensus 308 ~Ia 310 (539)
T PLN02590 308 PLG 310 (539)
T ss_pred HHH
Confidence 553
No 336
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=48.52 E-value=34 Score=23.76 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=25.4
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCC
Q 032791 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQ 73 (133)
Q Consensus 45 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~ 73 (133)
+..+|++|-.++|+.+..+...|..+|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 55679999999999999999999999964
No 337
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=48.50 E-value=72 Score=24.68 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=46.5
Q ss_pred hhHHHHHHhhcc-CCcEEEEEeCCChhHHHHHHHHHhcCCCCe--EEEEcC-CCCHH-HHHHHHHHHcCCCcccEEEECC
Q 032791 34 HSVSAFVQNSIF-SNKIVIFSKSYCPYCLRAKRIFADLNEQPF--VVELDL-RDDGA-QIQYILLDLVGRRTVPQIFVNG 108 (133)
Q Consensus 34 ~~~~~~~~~~~~-~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~--~~~id~-~~~~~-~~~~~l~~~~g~~~vP~vfi~G 108 (133)
+++...+..+.. .+.|-+|+ ..|..-..+-+...+.+.+.+ +...|. +...+ .+........|+..|-.|.|+.
T Consensus 63 ~~~~sDLe~l~~~t~~IR~Y~-sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGn 141 (305)
T COG5309 63 DQVASDLELLASYTHSIRTYG-SDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGN 141 (305)
T ss_pred HHHHhHHHHhccCCceEEEee-ccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEech
Confidence 344444444442 23688898 788877777777787775433 222232 22212 2233333446788888889998
Q ss_pred eEeec
Q 032791 109 EHIGG 113 (133)
Q Consensus 109 ~~igG 113 (133)
+.+.+
T Consensus 142 Eal~r 146 (305)
T COG5309 142 EALNR 146 (305)
T ss_pred hhhhc
Confidence 87755
No 338
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=46.74 E-value=47 Score=22.50 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=19.8
Q ss_pred CcEEEEEe-CCChhHHHHHHHHHhc
Q 032791 47 NKIVIFSK-SYCPYCLRAKRIFADL 70 (133)
Q Consensus 47 ~~Vviy~~-~~Cp~C~~ak~~L~~~ 70 (133)
+.|.+|+. +-|+.|..+..-|...
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~~ 121 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKKD 121 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHHH
Confidence 67999998 7899999887777664
No 339
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=46.67 E-value=32 Score=20.54 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=16.6
Q ss_pred cccEEEECCeEeeccH--HHHHHHHc
Q 032791 100 TVPQIFVNGEHIGGAD--DLKAAVLS 123 (133)
Q Consensus 100 ~vP~vfi~G~~igG~~--~l~~~~~~ 123 (133)
.=|.+.|||+.++..+ .+.++.+.
T Consensus 46 ~gP~v~V~~~~~~~~t~~~i~~~~~~ 71 (72)
T cd03082 46 RAPAALVGQRPVDGATPAAVAAAVEA 71 (72)
T ss_pred CCCeEEECCEEeCCcCHHHHHHHHhc
Confidence 4699999999998753 44444443
No 340
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=45.64 E-value=16 Score=21.65 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=17.1
Q ss_pred cCCCcccEEEECCeEeeccHHHHHH-HHcChHHHhhc
Q 032791 96 VGRRTVPQIFVNGEHIGGADDLKAA-VLSGQLQQLLG 131 (133)
Q Consensus 96 ~g~~~vP~vfi~G~~igG~~~l~~~-~~~g~L~~~L~ 131 (133)
.|...+|.| |||.|=+..- -++-+|++||+
T Consensus 13 pGa~~lP~I------IGGSDLi~h~~~knseleeWl~ 43 (65)
T PF08599_consen 13 PGAGGLPHI------IGGSDLIAHHAGKNSELEEWLR 43 (65)
T ss_pred CCCCCCCee------ecchhhhhccccccccHHHHHH
Confidence 366677765 5555533322 23457888874
No 341
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=45.61 E-value=1e+02 Score=21.48 Aligned_cols=43 Identities=16% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEeCCChh-HHHH----HHH---HHhcCCCCe--EEEEcCCCCHH-HHHHH
Q 032791 49 IVIFSKSYCPY-CLRA----KRI---FADLNEQPF--VVELDLRDDGA-QIQYI 91 (133)
Q Consensus 49 Vviy~~~~Cp~-C~~a----k~~---L~~~~~~~~--~~~id~~~~~~-~~~~~ 91 (133)
++-|+-..||. |-.. .++ |.+.+.+.. ++.+|...|.+ .++++
T Consensus 56 lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 56 LVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp EEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred EEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 66677788876 6533 233 333222222 56667655544 33333
No 342
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=45.11 E-value=16 Score=24.57 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=12.4
Q ss_pred chhHHHHHHhhhHH
Q 032791 5 GWQSRFLVEAVGLL 18 (133)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (133)
.|.||+|++..+++
T Consensus 34 pWNysiL~Ls~vvl 47 (125)
T PF15048_consen 34 PWNYSILALSFVVL 47 (125)
T ss_pred CcchHHHHHHHHHH
Confidence 69999999988876
No 343
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.07 E-value=52 Score=23.87 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.3
Q ss_pred CCCcccEEEECCeEeeccHHHHHH
Q 032791 97 GRRTVPQIFVNGEHIGGADDLKAA 120 (133)
Q Consensus 97 g~~~vP~vfi~G~~igG~~~l~~~ 120 (133)
|.-..|++|++++..-|.|.+-.+
T Consensus 173 GvfGaPtfivg~q~fwGqDRL~~l 196 (203)
T COG3917 173 GVFGAPTFIVGDQLFWGQDRLYQL 196 (203)
T ss_pred CccCCCeEEECCeeeechhHHHHH
Confidence 677899999999999999887443
No 344
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=43.54 E-value=1e+02 Score=20.88 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCCC-CHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHcChHHHhh
Q 032791 60 CLRAKRIFADLNEQPFVVELDLRD-DGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSGQLQQLL 130 (133)
Q Consensus 60 C~~ak~~L~~~~~~~~~~~id~~~-~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~g~L~~~L 130 (133)
-.+.++.|+++|.+ +..++... +.+...+.+. ..-.||+.| |.--.+....++-.|.+.|
T Consensus 2 ~~~~~~~f~~~g~~--v~~l~~~~~~~~~~~~~i~------~ad~I~~~G---G~~~~l~~~l~~t~l~~~i 62 (154)
T PF03575_consen 2 VEKFRKAFRKLGFE--VDQLDLSDRNDADILEAIR------EADAIFLGG---GDTFRLLRQLKETGLDEAI 62 (154)
T ss_dssp HHHHHHHHHHCT-E--EEECCCTSCGHHHHHHHHH------HSSEEEE-----S-HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHCCCE--EEEEeccCCChHHHHHHHH------hCCEEEECC---CCHHHHHHHHHhCCHHHHH
Confidence 46788999999976 56777765 3333344443 356777765 1222344444444444444
No 345
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=43.53 E-value=34 Score=24.49 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=17.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHh
Q 032791 48 KIVIFSKSYCPYCLRAKRIFAD 69 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~ 69 (133)
+|-+|+..-||+|-=+++-|++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~ 23 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCR 23 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHH
Confidence 5779999999999766665544
No 346
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=42.63 E-value=23 Score=26.28 Aligned_cols=18 Identities=22% Similarity=0.646 Sum_probs=15.0
Q ss_pred CcEEEEEeCCChhHHHHH
Q 032791 47 NKIVIFSKSYCPYCLRAK 64 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak 64 (133)
-+|.+|+-+-||+|.+..
T Consensus 41 v~ItlyyEaLCPdc~~Fi 58 (220)
T KOG3160|consen 41 VNITLYYEALCPDCSKFI 58 (220)
T ss_pred eEEEEEEEecCccHHHHH
Confidence 459999999999998543
No 347
>PLN02880 tyrosine decarboxylase
Probab=42.26 E-value=99 Score=25.51 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=43.7
Q ss_pred CcEEEEEeCCChhH-HHHHHHHHhcCCC-CeEEEEcC----CCCHHHHHHHHHHHcCCCcccEEEE---CCeEeeccHHH
Q 032791 47 NKIVIFSKSYCPYC-LRAKRIFADLNEQ-PFVVELDL----RDDGAQIQYILLDLVGRRTVPQIFV---NGEHIGGADDL 117 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C-~~ak~~L~~~~~~-~~~~~id~----~~~~~~~~~~l~~~~g~~~vP~vfi---~G~~igG~~~l 117 (133)
.++++|.+..+.+| .|+..+|.- +.+ ...+..|. ..+.+.+++.+.+.......|.+++ +-...|.+|.+
T Consensus 180 ~~~vv~~S~~aH~Sv~Kaa~~lGl-g~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl 258 (490)
T PLN02880 180 EKLVVYASDQTHSALQKACQIAGI-HPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPL 258 (490)
T ss_pred CCeEEEEcCCchHHHHHHHHHcCC-CHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcH
Confidence 56899999999998 455555532 211 01344543 2356677777765444556788766 33456777776
Q ss_pred HHH
Q 032791 118 KAA 120 (133)
Q Consensus 118 ~~~ 120 (133)
.+.
T Consensus 259 ~eI 261 (490)
T PLN02880 259 LEL 261 (490)
T ss_pred HHH
Confidence 554
No 348
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=41.66 E-value=57 Score=21.27 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=39.1
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHcC
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSG 124 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~g 124 (133)
..+|++..+..|++..++++. .+.|... ++-+|.... ......+........+|.++|.-+ .-+.++++.+.|
T Consensus 43 ~GkIvLv~rg~c~f~~K~~~A-~~aGA~a-vIi~n~~~~-~~~~~~~~~~~~~~~iP~~~Is~~---~G~~l~~~l~~g 115 (122)
T cd04816 43 KGAIVLVDRGGCPFADKQKVA-AARGAVA-VIVVNNSDG-GGTAGTLGAPNIDLKVPVGVITKA---AGAALRRRLGAG 115 (122)
T ss_pred CCeEEEEECCCCCHHHHHHHH-HHCCCcE-EEEEeCCCC-ccccccccCCCCCCeeeEEEEcHH---HHHHHHHHHcCC
Confidence 678999999999999888764 4446432 344443331 100001111112346888888653 114455555444
No 349
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.57 E-value=1.2e+02 Score=23.78 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=43.2
Q ss_pred cEEEEEeCC-----ChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEE-CCeEeeccHHHHHHH
Q 032791 48 KIVIFSKSY-----CPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIGGADDLKAAV 121 (133)
Q Consensus 48 ~Vviy~~~~-----Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~G~~igG~~~l~~~~ 121 (133)
.+.+|+.++ |+.|..+.-+++=.+- + ..++...+.. .++...+|.+.. +|..|+|++++....
T Consensus 3 ~L~~~~~~~glptid~~sL~~l~y~kl~~~-~--l~v~~ssN~~--------~s~sg~LP~l~~~ng~~va~~~~iv~~L 71 (313)
T KOG3028|consen 3 ELHIWSGGYGLPTIDPDSLAALIYLKLAGA-P--LKVVVSSNPW--------RSPSGKLPYLITDNGTKVAGPVKIVQFL 71 (313)
T ss_pred eEEEecCCCCCCCcChhHHHHHHHHHHhCC-C--ceeEeecCCC--------CCCCCCCCeEEecCCceeccHHHHHHHH
Confidence 355666544 9999999999887762 2 2334433311 234456999976 569999999887776
Q ss_pred Hc
Q 032791 122 LS 123 (133)
Q Consensus 122 ~~ 123 (133)
++
T Consensus 72 ~k 73 (313)
T KOG3028|consen 72 KK 73 (313)
T ss_pred HH
Confidence 54
No 350
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=41.18 E-value=1.6e+02 Score=22.35 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=38.9
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCCCe-EEEEcCCC--CHHHHHHHHHHHcCCCcccEEEECCeEe
Q 032791 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQPF-VVELDLRD--DGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (133)
Q Consensus 45 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~-~~~id~~~--~~~~~~~~l~~~~g~~~vP~vfi~G~~i 111 (133)
..+.|++|+..+|+-.--+|.++.++..... .++++... +-..+.+.|. +.+.-=.||+|+=..
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~---~~~~kFIlf~DDLsF 117 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLR---DRPYKFILFCDDLSF 117 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHh---cCCCCEEEEecCCCC
Confidence 4567999999999999999999988753322 56665432 2233333333 222222357787443
No 351
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=40.54 E-value=34 Score=24.74 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCCcccEE-EECCeEeeccHHHHHHH
Q 032791 87 QIQYILLDLVGRRTVPQI-FVNGEHIGGADDLKAAV 121 (133)
Q Consensus 87 ~~~~~l~~~~g~~~vP~v-fi~G~~igG~~~l~~~~ 121 (133)
.++..|.+.-+.+++|-| ||+++-.-+..++-+++
T Consensus 100 ~~rh~l~~~~~~g~vP~IkFV~DK~~~~l~e~d~ll 135 (207)
T KOG4700|consen 100 QIRHRLEESIGIGTVPEIKFVGDKALLMLQEMDKLL 135 (207)
T ss_pred HHHHHHHHHhccccCCceEEecchHHHHHHHHHHHH
Confidence 345555666677788877 89988666666555544
No 352
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=40.54 E-value=62 Score=21.30 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=42.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHH---HHH-cCCCcccEEEECCeEeeccHHHHHHH
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYIL---LDL-VGRRTVPQIFVNGEHIGGADDLKAAV 121 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l---~~~-~g~~~vP~vfi~G~~igG~~~l~~~~ 121 (133)
..+|++.-+-+|+|-.|++. .++.|.. ..+-+|...+.. ...+ ... ....++|.++|..+ ..+.+++..
T Consensus 34 ~g~I~Lv~RG~C~F~~K~~~-Aq~aGA~-avII~n~~~~~~--~~~~~m~~~~~~~~i~IP~v~Is~~---dG~~L~~~l 106 (118)
T cd02127 34 NGNIALIERGGCSFLTKAIN-AQKAGAL-AVIITDVNNDSD--EYYVEMIQDDSSRRADIPAAFLLGK---NGYMIRKTL 106 (118)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCc-EEEEEECCCCcc--ccceEecCCCCCCCceEEEEEecHH---HHHHHHHHH
Confidence 46788888899999999888 4555643 234444433211 1111 000 12347899998654 224566666
Q ss_pred HcChH
Q 032791 122 LSGQL 126 (133)
Q Consensus 122 ~~g~L 126 (133)
..|..
T Consensus 107 ~~g~~ 111 (118)
T cd02127 107 ERLGL 111 (118)
T ss_pred HcCCc
Confidence 65544
No 353
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=40.48 E-value=1.1e+02 Score=22.17 Aligned_cols=54 Identities=20% Similarity=0.392 Sum_probs=28.0
Q ss_pred HhhccCCc-EEEEEeCCChh-HHH----HHHHHHhcCC----C--CeEEEEcCCCCHHHHHHHHHHHcC
Q 032791 41 QNSIFSNK-IVIFSKSYCPY-CLR----AKRIFADLNE----Q--PFVVELDLRDDGAQIQYILLDLVG 97 (133)
Q Consensus 41 ~~~~~~~~-Vviy~~~~Cp~-C~~----ak~~L~~~~~----~--~~~~~id~~~~~~~~~~~l~~~~g 97 (133)
...++... ++.|+-..||. |.. ....+++++. + ..++.+|...|. .+.|+++..
T Consensus 62 ~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt---p~~lk~Y~~ 127 (207)
T COG1999 62 LKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT---PEVLKKYAE 127 (207)
T ss_pred ccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC---HHHHHHHhc
Confidence 33333444 55566678876 643 4445555541 1 125677776664 345555533
No 354
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=40.32 E-value=31 Score=24.27 Aligned_cols=20 Identities=20% Similarity=0.612 Sum_probs=14.8
Q ss_pred EEEeCCChhHHHHHHHHHhc
Q 032791 51 IFSKSYCPYCLRAKRIFADL 70 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~ 70 (133)
+|+.|-|++|-...+.+.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl 21 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKL 21 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHH
Confidence 68999999998887777665
No 355
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=39.45 E-value=1.2e+02 Score=20.50 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=32.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHHHHcCCC--cccEEEE
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRR--TVPQIFV 106 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~--~vP~vfi 106 (133)
+.+|.........+.+..|+... -+..+..+|.... . + +.+..|.. .+|++.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~-~---~-~~~~~~i~~~~~P~~vi 157 (184)
T PF13848_consen 99 LILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDF-P---R-LLKYFGIDEDDLPALVI 157 (184)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTT-H---H-HHHHTTTTTSSSSEEEE
T ss_pred EEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHh-H---H-HHHHcCCCCccCCEEEE
Confidence 45555566777777777766653 2223677787744 2 2 33355655 8999975
No 356
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=39.36 E-value=44 Score=22.19 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=19.0
Q ss_pred cCCCcccEEEECCeEe-eccHHHHHH
Q 032791 96 VGRRTVPQIFVNGEHI-GGADDLKAA 120 (133)
Q Consensus 96 ~g~~~vP~vfi~G~~i-gG~~~l~~~ 120 (133)
+|...+|.|++|++.| -|..++...
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~A 104 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVARA 104 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHHH
Confidence 5889999999998755 576666544
No 357
>PF15616 TerY-C: TerY-C metal binding domain
Probab=39.14 E-value=8.5 Score=26.21 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=11.5
Q ss_pred EEEeCCChhHHHHHHH
Q 032791 51 IFSKSYCPYCLRAKRI 66 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~ 66 (133)
+.+.|+||+|-....+
T Consensus 74 L~g~PgCP~CGn~~~f 89 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAF 89 (131)
T ss_pred hcCCCCCCCCcChhcE
Confidence 4566999999766444
No 358
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=39.06 E-value=33 Score=18.35 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=18.2
Q ss_pred EECCeEeecc--HHHHHHHHcChHH
Q 032791 105 FVNGEHIGGA--DDLKAAVLSGQLQ 127 (133)
Q Consensus 105 fi~G~~igG~--~~l~~~~~~g~L~ 127 (133)
..||+..|-+ +++.++..+|++.
T Consensus 5 ~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 5 ARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred eCCCeEECCcCHHHHHHHHHcCCCC
Confidence 4588899875 5888998888875
No 359
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=38.77 E-value=27 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=13.3
Q ss_pred EEEeCCChhHHHHHHHHHh
Q 032791 51 IFSKSYCPYCLRAKRIFAD 69 (133)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~ 69 (133)
+--.+.||.|.+-++-|.+
T Consensus 28 ~H~~s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 28 QHNSSQCPSCNKKRAELAQ 46 (104)
T ss_pred ccCcccChHHHHHHHHHHH
Confidence 3345789999988666544
No 360
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.88 E-value=19 Score=27.72 Aligned_cols=14 Identities=36% Similarity=0.921 Sum_probs=10.0
Q ss_pred EeCCChhHHHHHHH
Q 032791 53 SKSYCPYCLRAKRI 66 (133)
Q Consensus 53 ~~~~Cp~C~~ak~~ 66 (133)
-+++||||++-..+
T Consensus 269 KkqtCPYCKekVdl 282 (328)
T KOG1734|consen 269 KKQTCPYCKEKVDL 282 (328)
T ss_pred CCCCCchHHHHhhH
Confidence 34889999865543
No 361
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=37.79 E-value=2.4e+02 Score=23.48 Aligned_cols=75 Identities=15% Similarity=0.329 Sum_probs=44.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCC----HHHHHHHHHHHcCCCcccEEE---ECCeEeeccHHHH
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD----GAQIQYILLDLVGRRTVPQIF---VNGEHIGGADDLK 118 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~----~~~~~~~l~~~~g~~~vP~vf---i~G~~igG~~~l~ 118 (133)
-.+.++|++..|.|..+--+.+--+|- .+++.++..+. .++++..+.+.-....+|.+. ++-...|.||+|.
T Consensus 195 ~p~lilFtSeesHYSi~kaAa~lg~gt-d~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~ 273 (510)
T KOG0629|consen 195 LPPLILFTSEESHYSIKKAAAFLGLGT-DHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLN 273 (510)
T ss_pred CCcEEEEecccchhhHHHHHHHhccCC-ceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHH
Confidence 357999999999999655555545553 34555554433 233444333322334456654 3456778899885
Q ss_pred HHH
Q 032791 119 AAV 121 (133)
Q Consensus 119 ~~~ 121 (133)
...
T Consensus 274 ~ia 276 (510)
T KOG0629|consen 274 GIA 276 (510)
T ss_pred HHH
Confidence 543
No 362
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.27 E-value=1e+02 Score=19.15 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=23.8
Q ss_pred HHHHHhhccCCcEEEEEeCCChh--HHHHHHHHHhcCC
Q 032791 37 SAFVQNSIFSNKIVIFSKSYCPY--CLRAKRIFADLNE 72 (133)
Q Consensus 37 ~~~~~~~~~~~~Vviy~~~~Cp~--C~~ak~~L~~~~~ 72 (133)
...+...+...++||+.++.+.+ +..+++..++.++
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~i 76 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGI 76 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCC
Confidence 34466666677777766666655 5677777777776
No 363
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=37.18 E-value=1.9e+02 Score=23.68 Aligned_cols=30 Identities=7% Similarity=0.164 Sum_probs=25.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEc
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id 80 (133)
+.+|+-|+|.-...++.+..+++.. ++.++
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~--~i~vs 180 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIE--PIVMS 180 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCC--eEEEE
Confidence 6789999999999999999999986 35554
No 364
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=37.09 E-value=2.2e+02 Score=22.88 Aligned_cols=86 Identities=7% Similarity=0.077 Sum_probs=54.7
Q ss_pred hhhHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEE-------------------------cCCCC--H
Q 032791 33 DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVEL-------------------------DLRDD--G 85 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~i-------------------------d~~~~--~ 85 (133)
+=.+..++.++++..-+.||+-..|.--.-+..+.+++.+ |+ +.. .+.++ .
T Consensus 48 ~F~~~~~ac~l~~~gV~AI~Gp~s~~~a~~v~sic~~l~V-P~-is~~~~~~~~~~~~~~~~p~~~~~~~~~~lrp~~~~ 125 (400)
T cd06392 48 PFQAVQEACDLMTQGILALVTSTGCASANALQSLTDAMHI-PH-LFVQRNSGGSPRTACHLNPSPEGEEYTLAARPPVRL 125 (400)
T ss_pred hhHHHHHHHHHHhcCeEEEECCCchhHHHHHHHHhccCcC-Cc-EeecccccccccccccCCCCcCcCceeEEecCchHH
Confidence 3445566677776776788887777777778888888877 54 222 11121 1
Q ss_pred HHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHH
Q 032791 86 AQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAA 120 (133)
Q Consensus 86 ~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~ 120 (133)
...-..+-..++|+.+=.|+-++.-+.+..++.+.
T Consensus 126 ~~Ai~dlV~~~~W~~v~~iYD~d~gl~~lq~L~~~ 160 (400)
T cd06392 126 NDVMLKLVTELRWQKFIVFYDSEYDIRGLQSFLDQ 160 (400)
T ss_pred HHHHHHHHHhCCCcEEEEEEECcccHHHHHHHHHH
Confidence 22234555678999998888666656666555444
No 365
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=35.81 E-value=1.1e+02 Score=19.17 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=25.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcC
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~ 81 (133)
|++++.|+|+--.-++.+.+.++.. ++.+|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~--~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP--FIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE--EEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc--cccccc
Confidence 6789999999999999999998853 466654
No 366
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=35.22 E-value=31 Score=21.84 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=25.0
Q ss_pred CcccchhHHHHHHhhhHHHhhhcCCCCCcccchhhHHHHHHh
Q 032791 1 MKKRGWQSRFLVEAVGLLFFLLLGNAPTATEADHSVSAFVQN 42 (133)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (133)
|+.-||--.++++.+++ ++..|.+.+.-+.....+...+++
T Consensus 1 M~~ig~~elliIlvV~l-llfGpkKLP~l~r~~G~~i~~fKk 41 (94)
T COG1826 1 MFGIGWSELLIILVVAL-LVFGPKKLPEAGRDLGKAIREFKK 41 (94)
T ss_pred CCCCCHHHHHHHHHHHH-HhcCcchhHHHHHHHHHHHHHHHH
Confidence 44567887788887777 555588887543343444333333
No 367
>PRK08118 topology modulation protein; Reviewed
Probab=35.17 E-value=1.5e+02 Score=20.42 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=24.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCC
Q 032791 47 NKIVIFSKSYCPYCLRAKRIFADLNEQ 73 (133)
Q Consensus 47 ~~Vviy~~~~Cp~C~~ak~~L~~~~~~ 73 (133)
.+|+|.+.++|+-..-++.+-+.++..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 579999999999999999999998875
No 368
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=35.07 E-value=2.1e+02 Score=21.97 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=47.1
Q ss_pred cchhhHHHHHH-hhccCCcEEEEEeCC--Ch--hHHHHHHHHHhcCCCCeEEEEcCCC-----CH--------HHHHHHH
Q 032791 31 EADHSVSAFVQ-NSIFSNKIVIFSKSY--CP--YCLRAKRIFADLNEQPFVVELDLRD-----DG--------AQIQYIL 92 (133)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~Vviy~~~~--Cp--~C~~ak~~L~~~~~~~~~~~id~~~-----~~--------~~~~~~l 92 (133)
...++....+. +.+. .+|+.+|-.+ -| .|..|+..-+++|+++.+++.|... ++ ..+...|
T Consensus 27 GvDSslLa~la~~~lG-~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l 105 (269)
T COG1606 27 GVDSSLLAKLAKEALG-DNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTL 105 (269)
T ss_pred CccHHHHHHHHHHHhc-cceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHH
Confidence 34445555554 5554 5566666544 22 4889999999999988888887765 11 2334455
Q ss_pred HHHcCCCcccEEEECCe
Q 032791 93 LDLVGRRTVPQIFVNGE 109 (133)
Q Consensus 93 ~~~~g~~~vP~vfi~G~ 109 (133)
.+..+.+.++.|. +|.
T Consensus 106 ~~~a~~~Gyd~V~-dGt 121 (269)
T COG1606 106 VEEAEKRGYDVVA-DGT 121 (269)
T ss_pred HHHHHHcCCCEEE-eCC
Confidence 5555566666554 443
No 369
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=34.76 E-value=52 Score=21.84 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=18.5
Q ss_pred cCCCcccEEEECCeEe-eccHHHHHH
Q 032791 96 VGRRTVPQIFVNGEHI-GGADDLKAA 120 (133)
Q Consensus 96 ~g~~~vP~vfi~G~~i-gG~~~l~~~ 120 (133)
+|...+|.|++|++.| -|-.++...
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~DV~~A 105 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETDVARA 105 (113)
T ss_pred cCCccCCEEEEcCCeEEecCccHHHH
Confidence 5889999999999855 565555443
No 370
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=33.03 E-value=1.8e+02 Score=21.82 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=43.2
Q ss_pred hhHHHHHHhhccCCcEEEEEeCCChhH-HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEee
Q 032791 34 HSVSAFVQNSIFSNKIVIFSKSYCPYC-LRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~~~Cp~C-~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~ig 112 (133)
.-+.++++.+-.++-.+=|.++.-... +...+-|+++|.+ +.+=++...-...++.+.+ ..--|.+++++...-
T Consensus 26 pga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~tsl~aa~~~~~~---~~lrP~l~v~d~a~~ 100 (262)
T KOG3040|consen 26 PGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIFTSLPAARQYLEE---NQLRPYLIVDDDALE 100 (262)
T ss_pred CCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhcCccHHHHHHHHh---cCCCceEEEcccchh
Confidence 346677777775665666666666665 4556667777754 2333444443444555554 344577777665443
Q ss_pred cc
Q 032791 113 GA 114 (133)
Q Consensus 113 G~ 114 (133)
.|
T Consensus 101 dF 102 (262)
T KOG3040|consen 101 DF 102 (262)
T ss_pred hC
Confidence 33
No 371
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=32.86 E-value=1.7e+02 Score=20.31 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=19.2
Q ss_pred CCcEEEEEe-CCChhHHHH-HHHHHhcCCC
Q 032791 46 SNKIVIFSK-SYCPYCLRA-KRIFADLNEQ 73 (133)
Q Consensus 46 ~~~Vviy~~-~~Cp~C~~a-k~~L~~~~~~ 73 (133)
...+++|.. +-|++|+.. ..+.+++|++
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~ 128 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLK 128 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCC
Confidence 445666665 789999754 4556778875
No 372
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=31.95 E-value=1.4e+02 Score=20.58 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=31.5
Q ss_pred HHHHhhcc-CCcEEEEEeCCChh--HHHHHHHHHhcCCCCeEEEEcCCCC
Q 032791 38 AFVQNSIF-SNKIVIFSKSYCPY--CLRAKRIFADLNEQPFVVELDLRDD 84 (133)
Q Consensus 38 ~~~~~~~~-~~~Vviy~~~~Cp~--C~~ak~~L~~~~~~~~~~~id~~~~ 84 (133)
+.+++++. ..+|.+.+.+.-|. ...+.++|.+.|.+ ++.+|....
T Consensus 7 ~~i~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~--ViPVNP~~~ 54 (140)
T COG1832 7 EDIAEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYR--VIPVNPKLA 54 (140)
T ss_pred HHHHHHHHhCceEEEEecCCCCCccHHHHHHHHHHCCCE--EEeeCcccc
Confidence 44555554 44577888877665 78999999999944 677776443
No 373
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=31.49 E-value=25 Score=20.49 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=10.0
Q ss_pred CCChhHHHHHHHH
Q 032791 55 SYCPYCLRAKRIF 67 (133)
Q Consensus 55 ~~Cp~C~~ak~~L 67 (133)
|-||.|+++-+-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 5699999876654
No 374
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=30.78 E-value=1.2e+02 Score=18.07 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=25.1
Q ss_pred hHHHHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCC
Q 032791 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ 73 (133)
Q Consensus 35 ~~~~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~ 73 (133)
+..+.+..+-+..+|++|.. .+..+..+...|.+.|..
T Consensus 45 ~~~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 45 SLDDWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 34444444445566777765 667777788888888853
No 375
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=30.55 E-value=14 Score=20.16 Aligned_cols=6 Identities=50% Similarity=1.796 Sum_probs=4.2
Q ss_pred ChhHHH
Q 032791 57 CPYCLR 62 (133)
Q Consensus 57 Cp~C~~ 62 (133)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 788853
No 376
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=30.26 E-value=17 Score=25.14 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=13.0
Q ss_pred EEEeC-CChhHHHHHHHHH
Q 032791 51 IFSKS-YCPYCLRAKRIFA 68 (133)
Q Consensus 51 iy~~~-~Cp~C~~ak~~L~ 68 (133)
||+-. .||+|++....|.
T Consensus 5 IFGpei~CPhCRQ~ipALt 23 (163)
T TIGR02652 5 IFGPEIRCPHCRQNIPALT 23 (163)
T ss_pred ccCCcCcCchhhcccchhe
Confidence 34442 6999999988863
No 377
>PRK15320 transcriptional activator SprB; Provisional
Probab=30.22 E-value=2.2e+02 Score=21.18 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=27.7
Q ss_pred ChhHHHHHHHHHhcCCCCe---EEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCe
Q 032791 57 CPYCLRAKRIFADLNEQPF---VVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGE 109 (133)
Q Consensus 57 Cp~C~~ak~~L~~~~~~~~---~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~ 109 (133)
|.-|...-.+|.++.-.|. +.-++.+++ --+...|... -...|++.|.++
T Consensus 30 ~~t~~~l~~ll~~l~~~p~a~lil~l~p~eh-~~lf~~l~~~--l~~~~v~vv~d~ 82 (251)
T PRK15320 30 VKTCNSLTALLHSLSDMPDAGLILALNPHEH-VYLFHALLTR--LQNRKVLVVADR 82 (251)
T ss_pred hhhhhhHHHHHHHHhhCCCceEEEeeCchhH-HHHHHHHHHH--cCCCceEEEecc
Confidence 5667777777877765554 334444433 2223333333 456677777664
No 378
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=29.49 E-value=17 Score=25.06 Aligned_cols=13 Identities=23% Similarity=0.651 Sum_probs=11.0
Q ss_pred CChhHHHHHHHHH
Q 032791 56 YCPYCLRAKRIFA 68 (133)
Q Consensus 56 ~Cp~C~~ak~~L~ 68 (133)
.||+|++....|.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 6999999988763
No 379
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=29.39 E-value=1.9e+02 Score=22.31 Aligned_cols=34 Identities=6% Similarity=0.004 Sum_probs=23.6
Q ss_pred HHHHhhccCCcEEEEEeCCChh--HHHHHHHHHhcC
Q 032791 38 AFVQNSIFSNKIVIFSKSYCPY--CLRAKRIFADLN 71 (133)
Q Consensus 38 ~~~~~~~~~~~Vviy~~~~Cp~--C~~ak~~L~~~~ 71 (133)
......-.+..|.+|.+++++. ++++.+.+++..
T Consensus 57 ~~~~~~~~~~~i~vyl~~~~~~~~~~~l~~~l~~~~ 92 (309)
T TIGR00439 57 SALTQLYPSPQITVYLEKALAQSDADTVVSLLTRDK 92 (309)
T ss_pred HHHHhhccCceEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 3333444556799999998864 577777887764
No 380
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=29.26 E-value=76 Score=20.62 Aligned_cols=15 Identities=33% Similarity=1.094 Sum_probs=7.6
Q ss_pred CcEEEEEeC---CChhHH
Q 032791 47 NKIVIFSKS---YCPYCL 61 (133)
Q Consensus 47 ~~Vviy~~~---~Cp~C~ 61 (133)
..+++|+.. .|+||.
T Consensus 6 ~~~~~~t~~Cnl~C~yC~ 23 (139)
T PF13353_consen 6 IRVVLFTNGCNLRCKYCF 23 (139)
T ss_dssp CEEEEEEC--SB--TT-T
T ss_pred EEEEEEcCcccccCcCcC
Confidence 357888653 388994
No 381
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=28.91 E-value=2.2e+02 Score=24.09 Aligned_cols=46 Identities=13% Similarity=-0.010 Sum_probs=30.4
Q ss_pred cEEEEEe--CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHH
Q 032791 48 KIVIFSK--SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILL 93 (133)
Q Consensus 48 ~Vviy~~--~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~ 93 (133)
+|.|... ++=|.+.++...|+++|+.+.+.-...+..++...+..+
T Consensus 412 ~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~ 459 (577)
T PLN02948 412 LVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYAR 459 (577)
T ss_pred eEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHH
Confidence 3544444 567999999999999999744444445666555554433
No 382
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=28.75 E-value=52 Score=21.00 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=19.2
Q ss_pred CcccchhHHHHHHhhhHHHhhhcCCCCC
Q 032791 1 MKKRGWQSRFLVEAVGLLFFLLLGNAPT 28 (133)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (133)
||.-||.-.++++.+++ ++..+.+.+.
T Consensus 1 Mg~~g~~elliIlvIvl-llFG~~KLPe 27 (92)
T PRK00442 1 MGIFDWKHWIVILVVVV-LVFGTKKLKN 27 (92)
T ss_pred CCCccHHHHHHHHHHHH-HHhCcchHHH
Confidence 67778888888776666 5556677664
No 383
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=28.37 E-value=46 Score=21.68 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=12.5
Q ss_pred CcccEEEECCeEee
Q 032791 99 RTVPQIFVNGEHIG 112 (133)
Q Consensus 99 ~~vP~vfi~G~~ig 112 (133)
...|.+|.||+.||
T Consensus 80 ECTplvF~n~~Lvg 93 (102)
T PF11399_consen 80 ECTPLVFKNGKLVG 93 (102)
T ss_pred ceEEEEEECCEEEE
Confidence 46899999999997
No 384
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=28.18 E-value=1.7e+02 Score=18.91 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=25.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCC
Q 032791 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRD 83 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~ 83 (133)
+|++++.++|+--.-++.+.+.++.. +..+..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~--~~~i~~~~ 34 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRP--VIRINCSS 34 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCE--EEEEE-TT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcc--eEEEEecc
Confidence 48899999999999999999998754 34444443
No 385
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=27.97 E-value=53 Score=18.01 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=11.8
Q ss_pred CCcccEEEECCeEee
Q 032791 98 RRTVPQIFVNGEHIG 112 (133)
Q Consensus 98 ~~~vP~vfi~G~~ig 112 (133)
...++.|||||+.+-
T Consensus 17 ~~GI~~V~VNG~~vv 31 (48)
T PF07908_consen 17 AEGIDYVFVNGQIVV 31 (48)
T ss_dssp -BSEEEEEETTEEEE
T ss_pred CCCEEEEEECCEEEE
Confidence 357899999998774
No 386
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=27.90 E-value=1.9e+02 Score=19.39 Aligned_cols=18 Identities=6% Similarity=-0.151 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHhcCCCCe
Q 032791 58 PYCLRAKRIFADLNEQPF 75 (133)
Q Consensus 58 p~C~~ak~~L~~~~~~~~ 75 (133)
|.-.++...|++.|+.+.
T Consensus 50 ~~~~~v~~~L~~~gI~~k 67 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIK 67 (127)
T ss_pred chHHHHHHHHHHCCCCcc
Confidence 566777788888776643
No 387
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=27.55 E-value=1.4e+02 Score=21.28 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=6.7
Q ss_pred EEECCeEeeccHH
Q 032791 104 IFVNGEHIGGADD 116 (133)
Q Consensus 104 vfi~G~~igG~~~ 116 (133)
+.+=|...||+-.
T Consensus 61 ~~liGSSlGG~~A 73 (187)
T PF05728_consen 61 VVLIGSSLGGFYA 73 (187)
T ss_pred eEEEEEChHHHHH
Confidence 4444556666543
No 388
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=27.25 E-value=2.6e+02 Score=20.74 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=28.9
Q ss_pred hhHHHHHHhhccCCcEEEEE-eC-----CChhHHHHHHHHHhcCCCCeEEEEcCC
Q 032791 34 HSVSAFVQNSIFSNKIVIFS-KS-----YCPYCLRAKRIFADLNEQPFVVELDLR 82 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~-~~-----~Cp~C~~ak~~L~~~~~~~~~~~id~~ 82 (133)
+.....+.+.+...+-++|. +- +=.|..++++.|+++|.+ +..++..
T Consensus 18 ~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~--v~~l~~~ 70 (233)
T PRK05282 18 EHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIE--VTGIHRV 70 (233)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCE--EEEeccc
Confidence 45555666655444434443 22 235789999999999976 4556554
No 389
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=26.90 E-value=33 Score=19.99 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=13.1
Q ss_pred ccchhHHHHHHhhhHH
Q 032791 3 KRGWQSRFLVEAVGLL 18 (133)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (133)
-|+||+...+-++|-+
T Consensus 2 ~rg~r~~~~~ggfVg~ 17 (58)
T PF15061_consen 2 LRGWRYALFVGGFVGL 17 (58)
T ss_pred CccccchhhHHHHHHH
Confidence 3899999998887765
No 390
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.88 E-value=1.5e+02 Score=22.04 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=15.9
Q ss_pred HHcCCCcccEEEE-CCeEeecc
Q 032791 94 DLVGRRTVPQIFV-NGEHIGGA 114 (133)
Q Consensus 94 ~~~g~~~vP~vfi-~G~~igG~ 114 (133)
...|.+.||++.+ +|-.|-|.
T Consensus 178 ~e~gI~gVP~fv~d~~~~V~Ga 199 (225)
T COG2761 178 QEMGIRGVPTFVFDGKYAVSGA 199 (225)
T ss_pred HHCCCccCceEEEcCcEeecCC
Confidence 3468999999999 55566664
No 391
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.87 E-value=1.5e+02 Score=18.54 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCCcccEEEECCeEeeccH
Q 032791 88 IQYILLDLVGRRTVPQIFVNGEHIGGAD 115 (133)
Q Consensus 88 ~~~~l~~~~g~~~vP~vfi~G~~igG~~ 115 (133)
..+.+++......+|...|+....|-.+
T Consensus 63 ~~~~i~~~~~~~~ipv~~I~~~~Y~~md 90 (95)
T TIGR00853 63 MLPDLKKETDKKGIPVEVINGAQYGKLT 90 (95)
T ss_pred HHHHHHHHhhhcCCCEEEeChhhcccCC
Confidence 3556666666667899999887776543
No 392
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.32 E-value=1.1e+02 Score=16.91 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=13.5
Q ss_pred CCChhH-HHHHHHHHhcC
Q 032791 55 SYCPYC-LRAKRIFADLN 71 (133)
Q Consensus 55 ~~Cp~C-~~ak~~L~~~~ 71 (133)
=.|+.| .++++.|.++.
T Consensus 7 m~C~~C~~~v~~~l~~~~ 24 (62)
T PF00403_consen 7 MTCEGCAKKVEKALSKLP 24 (62)
T ss_dssp TTSHHHHHHHHHHHHTST
T ss_pred cccHHHHHHHHHHHhcCC
Confidence 479999 57788888874
No 393
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=26.21 E-value=2.8e+02 Score=20.66 Aligned_cols=58 Identities=3% Similarity=0.123 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCe
Q 032791 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGE 109 (133)
Q Consensus 46 ~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~ 109 (133)
...++++.+...+.+.++.+.|.+.++.-. +-.....+.+.+... .+ . .+|.|+++..
T Consensus 31 Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGi-I~~s~~~~~~~l~~~-~~---~-~iPvV~~~~~ 88 (279)
T PF00532_consen 31 GYQLLLCNTGDDEEKEEYIELLLQRRVDGI-ILASSENDDEELRRL-IK---S-GIPVVLIDRY 88 (279)
T ss_dssp TCEEEEEEETTTHHHHHHHHHHHHTTSSEE-EEESSSCTCHHHHHH-HH---T-TSEEEEESS-
T ss_pred CCEEEEecCCCchHHHHHHHHHHhcCCCEE-EEecccCChHHHHHH-HH---c-CCCEEEEEec
Confidence 355888888999999988888988887654 333443332443332 22 2 5788877654
No 394
>PRK00766 hypothetical protein; Provisional
Probab=25.52 E-value=1.8e+02 Score=21.05 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=17.2
Q ss_pred CcccEEEECCeEeeccH--HHHHHHH
Q 032791 99 RTVPQIFVNGEHIGGAD--DLKAAVL 122 (133)
Q Consensus 99 ~~vP~vfi~G~~igG~~--~l~~~~~ 122 (133)
..+-.|+++|-.+|||+ |+.++++
T Consensus 70 ~~i~~V~L~Git~agFNvvD~~~l~~ 95 (194)
T PRK00766 70 GQLRVIMLDGITYGGFNVVDIEELYR 95 (194)
T ss_pred cceEEEEECCEeeeeeEEecHHHHHH
Confidence 46667788998888886 5555554
No 395
>PTZ00494 tuzin-like protein; Provisional
Probab=25.08 E-value=1.5e+02 Score=25.08 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=34.2
Q ss_pred CCcEEEEEe-CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCe
Q 032791 46 SNKIVIFSK-SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGE 109 (133)
Q Consensus 46 ~~~Vviy~~-~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~ 109 (133)
..+|++|+. .+|+-|--.+....+.+. +. +.+|+...++.++--.+ .-.||.+-+-|.
T Consensus 394 HPRIvV~TG~~GcGKSslcRsAvrkE~~-pa-V~VDVRg~EDtLrsVVK----ALgV~nve~CGD 452 (664)
T PTZ00494 394 HPRIVALAGGSGGGRCVPCRRAVRVEGV-AL-VHVDVGGTEDTLRSVVR----ALGVSNVEVCGD 452 (664)
T ss_pred CCcEEEEecCCCCCchHHHHHHHHHcCC-Ce-EEEEecCCcchHHHHHH----HhCCCChhhhcc
Confidence 345888877 689888888888888776 43 55566544333322222 234555555554
No 396
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=24.77 E-value=62 Score=20.93 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=13.2
Q ss_pred CCcccEEEECCeEeeccH
Q 032791 98 RRTVPQIFVNGEHIGGAD 115 (133)
Q Consensus 98 ~~~vP~vfi~G~~igG~~ 115 (133)
....=++||||.++|-+.
T Consensus 61 ~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 61 NAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp TTEEEEEEETTEEEEEEE
T ss_pred CceEEEEEECCEEeeeec
Confidence 334458899999998753
No 397
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=24.72 E-value=77 Score=23.48 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=17.0
Q ss_pred CCChhHHHHHHHHHhcCCC
Q 032791 55 SYCPYCLRAKRIFADLNEQ 73 (133)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~~~ 73 (133)
..||.+++++..|++.++.
T Consensus 154 ~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 154 SGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred ccCcHHHHHHHHHHHcCCC
Confidence 5699999999999998874
No 398
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=24.64 E-value=1.7e+02 Score=17.69 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=30.9
Q ss_pred cEEEEEeCCChhHHHHHHHH----HhcC-CCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEE
Q 032791 48 KIVIFSKSYCPYCLRAKRIF----ADLN-EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQI 104 (133)
Q Consensus 48 ~Vviy~~~~Cp~C~~ak~~L----~~~~-~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~v 104 (133)
...+|....-|...++.+-+ ++.- -.+...-+|+..+ .++++....-..|++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~-----P~lAe~~~ivAtPtL 59 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ-----PQLAEEDKIVATPTL 59 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC-----HhHHhhCCEEEechh
Confidence 35677777777776555544 4432 2233566788776 344555566666765
No 399
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.64 E-value=1.3e+02 Score=19.27 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCCcccEEEECCeEee
Q 032791 87 QIQYILLDLVGRRTVPQIFVNGEHIG 112 (133)
Q Consensus 87 ~~~~~l~~~~g~~~vP~vfi~G~~ig 112 (133)
...+.+++..+...+|...|+....|
T Consensus 59 ~~~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 59 SYYDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHHHHHHhhhcCCCEEEeCHHHHh
Confidence 34566777777888999999987666
No 400
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=24.59 E-value=1.2e+02 Score=17.86 Aligned_cols=17 Identities=12% Similarity=0.501 Sum_probs=13.8
Q ss_pred CCChhH-HHHHHHHHhcC
Q 032791 55 SYCPYC-LRAKRIFADLN 71 (133)
Q Consensus 55 ~~Cp~C-~~ak~~L~~~~ 71 (133)
=.|++| ..+++.|.+..
T Consensus 11 MtC~~C~~~V~~al~~v~ 28 (71)
T COG2608 11 MTCGHCVKTVEKALEEVD 28 (71)
T ss_pred cCcHHHHHHHHHHHhcCC
Confidence 369999 57888899886
No 401
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=24.49 E-value=4.3e+02 Score=22.22 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=36.7
Q ss_pred hhhHHHHHHhhccCCcEEEEEeCCCh-----hHHHHHHHHHhcC---CCCeEEEEcCCCCHH
Q 032791 33 DHSVSAFVQNSIFSNKIVIFSKSYCP-----YCLRAKRIFADLN---EQPFVVELDLRDDGA 86 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~~Vviy~~~~Cp-----~C~~ak~~L~~~~---~~~~~~~id~~~~~~ 86 (133)
++..++.++.+-++-+|.+|..+.-| +=..++.+|+++. -...+..+|...+++
T Consensus 36 S~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~ 97 (552)
T TIGR03521 36 SPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEED 97 (552)
T ss_pred CHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcch
Confidence 56777777777777788888877654 3467888888873 112267778766533
No 402
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=23.81 E-value=2.3e+02 Score=21.93 Aligned_cols=34 Identities=3% Similarity=-0.091 Sum_probs=23.2
Q ss_pred HHHHhhccCCcEEEEEeCCChh--HHHHHHHHHhcC
Q 032791 38 AFVQNSIFSNKIVIFSKSYCPY--CLRAKRIFADLN 71 (133)
Q Consensus 38 ~~~~~~~~~~~Vviy~~~~Cp~--C~~ak~~L~~~~ 71 (133)
......-.+..|.+|.+++++. ++++.+.|++..
T Consensus 57 ~~~~~~~~~~ei~vyl~~~~~~~~~~~l~~~L~~~~ 92 (309)
T PRK11026 57 QAATQWYPSPQLTVYLDKTLDDDAANAVVEQLKAED 92 (309)
T ss_pred HHHHhhccCceEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 3334444556799999999865 567777777654
No 403
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=23.17 E-value=3e+02 Score=19.91 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=32.7
Q ss_pred CCcEEEEEeCC---ChhHHHHHHHHHhcCCCCeEEEEcCCC----CHHHHHHHHHHHcCCCcccEEEECC
Q 032791 46 SNKIVIFSKSY---CPYCLRAKRIFADLNEQPFVVELDLRD----DGAQIQYILLDLVGRRTVPQIFVNG 108 (133)
Q Consensus 46 ~~~Vviy~~~~---Cp~C~~ak~~L~~~~~~~~~~~id~~~----~~~~~~~~l~~~~g~~~vP~vfi~G 108 (133)
..+|++..+.. +.+|.+..+.|++++... ...+++.. +.+++.+.+.. ...||++|
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~-v~~~~~~~~~~a~~~~~~~~l~~------ad~I~~~G 91 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGARE-VEVLVIDSREAANDPEVVARLRD------ADGIFFTG 91 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCce-eEEeccCChHHcCCHHHHHHHHh------CCEEEEeC
Confidence 45566655543 888999999999998642 23344432 22333334333 45677655
No 404
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=22.89 E-value=3.3e+02 Score=20.37 Aligned_cols=22 Identities=9% Similarity=0.002 Sum_probs=14.8
Q ss_pred hhHHHHHHhhccCCcEEEEEeC
Q 032791 34 HSVSAFVQNSIFSNKIVIFSKS 55 (133)
Q Consensus 34 ~~~~~~~~~~~~~~~Vviy~~~ 55 (133)
..+.+.+.+.++...++++..+
T Consensus 9 ~k~~~~~~~~l~~aDvVl~V~D 30 (276)
T TIGR03596 9 AKARREIKEKLKLVDVVIEVLD 30 (276)
T ss_pred HHHHHHHHHHHhhCCEEEEEEe
Confidence 3455666777777787777764
No 405
>PF14364 DUF4408: Domain of unknown function (DUF4408)
Probab=22.78 E-value=41 Score=17.32 Aligned_cols=17 Identities=18% Similarity=0.518 Sum_probs=12.2
Q ss_pred cch---hHHHHHHhhhHHHh
Q 032791 4 RGW---QSRFLVEAVGLLFF 20 (133)
Q Consensus 4 ~~~---~~~~~~~~~~~~~~ 20 (133)
++| +|.|++.+.+|..+
T Consensus 9 ~s~ltP~~Lfv~~N~IIi~i 28 (34)
T PF14364_consen 9 RSWLTPPYLFVIVNLIIITI 28 (34)
T ss_pred HHhcCCCeehhhhhhHHHHh
Confidence 455 77888888888533
No 406
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.68 E-value=2.4e+02 Score=21.42 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=31.8
Q ss_pred cchhhHHHHHHhhccCCcEEEEEeCCC-hhHHHHHHHHHhcCC
Q 032791 31 EADHSVSAFVQNSIFSNKIVIFSKSYC-PYCLRAKRIFADLNE 72 (133)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~Vviy~~~~C-p~C~~ak~~L~~~~~ 72 (133)
..++.+.+.+++++...+|.++..+.| +.|..+.+++++.++
T Consensus 53 ~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~i 95 (347)
T cd06340 53 GNPDIGATEAERLITEEGVVALVGAYQSAVTLAASQVAERYGV 95 (347)
T ss_pred CCHHHHHHHHHHHhccCCceEEecccchHhHHHHHHHHHHhCC
Confidence 345567778888888877777777776 568888899988875
No 407
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=22.58 E-value=1.8e+02 Score=17.19 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=9.0
Q ss_pred EEEECCeEeec
Q 032791 103 QIFVNGEHIGG 113 (133)
Q Consensus 103 ~vfi~G~~igG 113 (133)
-|++++++||-
T Consensus 31 EV~~g~EfiGv 41 (63)
T PF11324_consen 31 EVYIGDEFIGV 41 (63)
T ss_pred EEEeCCEEEEE
Confidence 46899999985
No 408
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.56 E-value=1.3e+02 Score=22.47 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=44.3
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHc--ChHHHhh
Q 032791 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLS--GQLQQLL 130 (133)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~--g~L~~~L 130 (133)
|.-..|-.++.+|+-.+. |+ .+-...+ .+. .+....+|.+-+|...+.+|.-|....+. ..|..++
T Consensus 32 ~d~ascLAVqtfLrMcnL-Pf--~v~~~~N----aef---mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~l 99 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNL-PF--NVRQRAN----AEF---MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWL 99 (257)
T ss_pred ccchhHHHHHHHHHHcCC-Cc--eeeecCC----ccc---cCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhh
Confidence 667889999999999987 44 2223332 112 12233899999999999999988877544 2444444
No 409
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=22.56 E-value=1.2e+02 Score=17.22 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=27.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCe
Q 032791 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGE 109 (133)
Q Consensus 49 Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~ 109 (133)
+.+|+...=-.+.-++.+|++.|+.+ .-.|...... .-..|..+.+.|+|..+
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~--~v~~~~~~~~------~g~~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPA--FVKNEHMSGY------AGEPGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--E--E--S----SS---------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcE--EEECCccchh------hcccCccCceEEEECHH
Confidence 45777777778899999999999863 3333332211 11145555688888764
No 410
>PRK01889 GTPase RsgA; Reviewed
Probab=22.42 E-value=3.9e+02 Score=21.02 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=30.9
Q ss_pred HHHHHH---HhcCCCCe--EEEEcCCCCHHHHHHHHHHHcCCCcccEEEECCeEeeccHHHHHHHHcCh
Q 032791 62 RAKRIF---ADLNEQPF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSGQ 125 (133)
Q Consensus 62 ~ak~~L---~~~~~~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~G~~igG~~~l~~~~~~g~ 125 (133)
...++| ...++.+. +-.+|..++.....+.+... ...+|.++++-..=-|.+++......|+
T Consensus 130 ~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~gl~~L~~~L~~g~ 196 (356)
T PRK01889 130 RIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEGLDVLAAWLSGGK 196 (356)
T ss_pred HHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCccHHHHHHHhhcCC
Confidence 444443 44566554 22334433322223344443 3456777776544346677777666554
No 411
>PF13972 TetR: Bacterial transcriptional repressor; PDB: 3RH2_A 3NNR_A.
Probab=22.12 E-value=52 Score=22.05 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=11.0
Q ss_pred chhHHHHHHhhhH
Q 032791 5 GWQSRFLVEAVGL 17 (133)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (133)
-|||+|++.+..-
T Consensus 35 ~w~YRF~~~dl~~ 47 (146)
T PF13972_consen 35 MWRYRFFYRDLPD 47 (146)
T ss_dssp HHHTHHHHHSHHH
T ss_pred HHHhhhHHccHHH
Confidence 4999999999665
No 412
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=22.11 E-value=1.5e+02 Score=24.27 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.6
Q ss_pred CCChhHHHHHHHHHhcCCCCe
Q 032791 55 SYCPYCLRAKRIFADLNEQPF 75 (133)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~~~~~ 75 (133)
++|-||+-++..|+..+..|.
T Consensus 230 S~~fy~e~ir~~L~a~g~~p~ 250 (583)
T KOG2454|consen 230 SGCFYFEIIRAALAAVGAPPN 250 (583)
T ss_pred ehhhHHHHHHHHHHHcCCCcc
Confidence 689999999999999997655
No 413
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=22.04 E-value=74 Score=20.64 Aligned_cols=15 Identities=40% Similarity=0.846 Sum_probs=12.4
Q ss_pred CcccEEEECCeEeec
Q 032791 99 RTVPQIFVNGEHIGG 113 (133)
Q Consensus 99 ~~vP~vfi~G~~igG 113 (133)
..-|.|+|||+.+|.
T Consensus 40 ~~~~~v~vdg~~ig~ 54 (117)
T PF11008_consen 40 AVKPDVYVDGELIGE 54 (117)
T ss_pred cccceEEECCEEEEE
Confidence 456899999999975
No 414
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=21.99 E-value=1.8e+02 Score=20.20 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=19.2
Q ss_pred CcccchhhHHHHHHhhccCCcEEEEEeCC
Q 032791 28 TATEADHSVSAFVQNSIFSNKIVIFSKSY 56 (133)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~Vviy~~~~ 56 (133)
+...+..+++++++++ +..+|.+|++.+
T Consensus 50 d~G~~d~~~~~fl~~l-~~KkV~lF~T~G 77 (160)
T PF12641_consen 50 DKGTPDKDMKEFLKKL-KGKKVALFGTAG 77 (160)
T ss_pred cCCCCCHHHHHHHHHc-cCCeEEEEEecC
Confidence 3556667777777774 456788888754
No 415
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=21.92 E-value=92 Score=18.72 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=13.9
Q ss_pred CCChhHH-HHHHHHHhcCC
Q 032791 55 SYCPYCL-RAKRIFADLNE 72 (133)
Q Consensus 55 ~~Cp~C~-~ak~~L~~~~~ 72 (133)
=-||.|+ .|++.+++.++
T Consensus 16 LPC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 16 LPCPECRIHAKEAIQKNNI 34 (70)
T ss_pred CCCHHHHHHHHHHHHhcCc
Confidence 4599995 78888888764
No 416
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.74 E-value=4.2e+02 Score=23.38 Aligned_cols=59 Identities=12% Similarity=0.319 Sum_probs=39.7
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEc--------CCCCHHHHHHHHHHHcCCCcccEE-EEC
Q 032791 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD--------LRDDGAQIQYILLDLVGRRTVPQI-FVN 107 (133)
Q Consensus 45 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id--------~~~~~~~~~~~l~~~~g~~~vP~v-fi~ 107 (133)
.+.-|++|+-|+|+----||+.-.+.+.+ |+.+- +.+++.+++.-+++ ...+.|.| |.|
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N--FisVKGPELlNkYVGESErAVR~vFqR--AR~saPCVIFFD 611 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN--FISVKGPELLNKYVGESERAVRQVFQR--ARASAPCVIFFD 611 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc--eEeecCHHHHHHHhhhHHHHHHHHHHH--hhcCCCeEEEec
Confidence 35669999999999999999999999876 45442 22333334443333 25678887 444
No 417
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=21.44 E-value=3.6e+02 Score=20.30 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=14.5
Q ss_pred hHHHHHHhhccCCcEEEEEeCC
Q 032791 35 SVSAFVQNSIFSNKIVIFSKSY 56 (133)
Q Consensus 35 ~~~~~~~~~~~~~~Vviy~~~~ 56 (133)
.+.+.+.+.++...++++..+.
T Consensus 13 k~~~~l~~~l~~aDvIL~VvDa 34 (287)
T PRK09563 13 KARREIKENLKLVDVVIEVLDA 34 (287)
T ss_pred HHHHHHHHHhhhCCEEEEEEEC
Confidence 3456666777777777777643
No 418
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=21.25 E-value=83 Score=18.80 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=19.1
Q ss_pred CcccchhHHHHHHhhhHHHhhhcCCCCC
Q 032791 1 MKKRGWQSRFLVEAVGLLFFLLLGNAPT 28 (133)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (133)
|+-=||.-.++++.+++ ++..|.+.+.
T Consensus 1 M~~ig~~elliIlvI~l-llFGpkKLp~ 27 (67)
T PRK03625 1 MGEISITKLLVVAALVV-LLFGTKKLRT 27 (67)
T ss_pred CCCCcHHHHHHHHHHHH-HHcCccHHHH
Confidence 55568887777777777 6666777653
No 419
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=20.99 E-value=32 Score=19.81 Aligned_cols=8 Identities=38% Similarity=1.165 Sum_probs=6.3
Q ss_pred CCChhHHH
Q 032791 55 SYCPYCLR 62 (133)
Q Consensus 55 ~~Cp~C~~ 62 (133)
++||+|.+
T Consensus 40 ngCPfC~~ 47 (55)
T PF14447_consen 40 NGCPFCGT 47 (55)
T ss_pred cCCCCCCC
Confidence 68999964
No 420
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=20.85 E-value=45 Score=17.92 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=15.1
Q ss_pred HHHHHHcCCCcccEEEECC
Q 032791 90 YILLDLVGRRTVPQIFVNG 108 (133)
Q Consensus 90 ~~l~~~~g~~~vP~vfi~G 108 (133)
.-+-...|+...|.|++.|
T Consensus 6 sviWHilGY~AmPvIil~G 24 (42)
T TIGR02808 6 STIWHVLGYGAMPFIILSG 24 (42)
T ss_pred HHHHHHhcccccchHHhhh
Confidence 3445667999999999887
No 421
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.75 E-value=3.8e+02 Score=20.92 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=39.5
Q ss_pred HHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCCCeEEEEcCCCCHHHH---HHHHHHHcCCCcccEEEECCeEe
Q 032791 38 AFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQI---QYILLDLVGRRTVPQIFVNGEHI 111 (133)
Q Consensus 38 ~~~~~~~~~~~Vviy~~~~Cp~C~~ak~~L~~~~~~~~~~~id~~~~~~~~---~~~l~~~~g~~~vP~vfi~G~~i 111 (133)
+-..|..+..-.++.+.-+=.-|.+..+.+++.| +.+....|+... +++ .+.+++..| -+.|.||..-|
T Consensus 53 ~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~-eei~~~a~~Vk~e~G---~V~ILVNNAGI 124 (300)
T KOG1201|consen 53 LIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDR-EEIYRLAKKVKKEVG---DVDILVNNAGI 124 (300)
T ss_pred HHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCH-HHHHHHHHHHHHhcC---CceEEEecccc
Confidence 3344444444445555555555677777777777 344577888765 333 334444444 56778877544
No 422
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=20.51 E-value=99 Score=25.05 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=11.0
Q ss_pred HHHHHcCC--CcccEEEECCe
Q 032791 91 ILLDLVGR--RTVPQIFVNGE 109 (133)
Q Consensus 91 ~l~~~~g~--~~vP~vfi~G~ 109 (133)
+.+-++|. .-||+|||+|.
T Consensus 64 F~~YYsge~~APVlTIFIGGN 84 (456)
T KOG2863|consen 64 FYKYYSGEIKAPVLTIFIGGN 84 (456)
T ss_pred HHHHhCCcccCceeEEEecCc
Confidence 33334453 35777788775
No 423
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=20.47 E-value=4.1e+02 Score=20.58 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=15.1
Q ss_pred eccHHHHHHHHcChHHHhhc
Q 032791 112 GGADDLKAAVLSGQLQQLLG 131 (133)
Q Consensus 112 gG~~~l~~~~~~g~L~~~L~ 131 (133)
|.-+-...+.++|.|++|++
T Consensus 115 GhG~i~~aL~~sG~L~~l~~ 134 (300)
T cd00897 115 GHGDIFESLYNSGLLDTLLA 134 (300)
T ss_pred CCchHHHHHHHCCcHHHHHh
Confidence 34456677889999999874
No 424
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=20.46 E-value=70 Score=17.90 Aligned_cols=12 Identities=33% Similarity=0.802 Sum_probs=9.7
Q ss_pred CChhHHHHHHHH
Q 032791 56 YCPYCLRAKRIF 67 (133)
Q Consensus 56 ~Cp~C~~ak~~L 67 (133)
-|+.|++++..-
T Consensus 35 RC~~CR~~rk~~ 46 (49)
T PF13451_consen 35 RCPSCRQARKQR 46 (49)
T ss_pred cCHHHHHHHHHh
Confidence 599999988653
No 425
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=20.18 E-value=4.1e+02 Score=21.02 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=11.5
Q ss_pred CcccEEEECCeEeec
Q 032791 99 RTVPQIFVNGEHIGG 113 (133)
Q Consensus 99 ~~vP~vfi~G~~igG 113 (133)
..+|.+.|++.+...
T Consensus 342 ~GIP~L~iE~D~~~~ 356 (377)
T TIGR03190 342 NGIPTLFLEFDITNP 356 (377)
T ss_pred CCCCEEEEecCCCCc
Confidence 469999998877644
No 426
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=20.18 E-value=2.5e+02 Score=18.01 Aligned_cols=25 Identities=4% Similarity=-0.124 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCcccEEEECCeEeec
Q 032791 89 QYILLDLVGRRTVPQIFVNGEHIGG 113 (133)
Q Consensus 89 ~~~l~~~~g~~~vP~vfi~G~~igG 113 (133)
.+.+++......+|...|+....|.
T Consensus 64 ~~~i~~~~~~~~ipv~~I~~~~Y~~ 88 (104)
T PRK09590 64 FKQFEEAGAKVGKPVVQIPPQAYIP 88 (104)
T ss_pred HHHHHHHhhhcCCCEEEeCHHHcCC
Confidence 4566666677789999999988874
No 427
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.13 E-value=18 Score=28.07 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=14.8
Q ss_pred cccchhHHHHHHhhhHHHhhh
Q 032791 2 KKRGWQSRFLVEAVGLLFFLL 22 (133)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (133)
+.| |.|+|.|++..| +|+.
T Consensus 199 ~~r-~eYpfAVvgINI-T~m~ 217 (302)
T KOG2998|consen 199 HPR-WEYPFAVVGINI-TFMA 217 (302)
T ss_pred CCc-cCCceEEEeecH-HHHH
Confidence 455 999999999999 4443
Done!