Query 032792
Match_columns 133
No_of_seqs 106 out of 238
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zso_A Hypothetical protein; s 100.0 5.1E-53 1.7E-57 319.8 15.9 123 1-132 9-133 (164)
2 3j20_W 30S ribosomal protein S 93.0 0.038 1.3E-06 35.2 1.6 34 27-76 9-43 (63)
3 2xzm_6 RPS27E; ribosome, trans 91.2 0.091 3.1E-06 35.0 1.8 34 27-76 26-60 (81)
4 1qxf_A GR2, 30S ribosomal prot 90.4 0.12 4.2E-06 33.1 1.8 32 30-76 3-35 (66)
5 3iz6_X 40S ribosomal protein S 89.4 0.1 3.5E-06 35.1 0.9 34 27-76 30-64 (86)
6 3u5c_b RP61, YS20, 40S ribosom 87.3 0.22 7.4E-06 33.2 1.4 34 27-76 28-62 (82)
7 2x5c_A Hypothetical protein OR 67.4 4.1 0.00014 28.1 2.8 21 66-86 51-71 (131)
8 2elu_A Zinc finger protein 406 66.3 1.2 4.1E-05 24.8 -0.0 19 59-77 1-19 (37)
9 1k81_A EIF-2-beta, probable tr 48.1 11 0.00038 20.7 2.0 15 65-79 19-33 (36)
10 2e2z_A TIM15; protein import, 46.6 30 0.001 23.5 4.3 41 29-78 8-49 (100)
11 3o9x_A Uncharacterized HTH-typ 43.8 25 0.00085 23.5 3.7 40 35-76 3-45 (133)
12 1lko_A Rubrerythrin all-iron(I 43.4 18 0.0006 26.7 3.1 25 34-76 155-180 (191)
13 2k5c_A Uncharacterized protein 41.6 8.8 0.0003 25.6 1.0 46 32-78 6-62 (95)
14 3kup_A Chromobox protein homol 38.9 21 0.00072 22.0 2.4 20 57-76 21-40 (65)
15 1vq8_Z 50S ribosomal protein L 35.2 29 0.00099 22.6 2.8 10 67-76 45-54 (83)
16 1wii_A Hypothetical UPF0222 pr 32.5 21 0.00071 23.5 1.7 17 67-83 23-39 (85)
17 3vhs_A ATPase wrnip1; zinc fin 30.9 21 0.00071 18.7 1.2 12 33-44 5-17 (29)
18 4gq1_A NUP37; propeller, trans 29.2 28 0.00095 26.9 2.2 23 110-132 362-384 (393)
19 2liy_A Epidermal patterning fa 28.8 41 0.0014 19.4 2.3 18 69-86 12-29 (45)
20 1yuz_A Nigerythrin; rubrythrin 28.1 25 0.00084 26.2 1.7 24 34-76 171-195 (202)
21 3pwf_A Rubrerythrin; non heme 27.8 29 0.00098 25.2 1.9 22 36-76 140-162 (170)
22 3q6s_A Chromobox protein homol 25.3 69 0.0024 20.4 3.3 20 57-76 18-37 (78)
23 3i3c_A Chromobox protein homol 25.1 65 0.0022 20.4 3.1 20 57-76 31-50 (75)
24 3cc2_Z 50S ribosomal protein L 25.0 40 0.0014 23.5 2.2 10 67-76 78-87 (116)
25 2lc4_A PILP protein; type IV p 24.7 1.5E+02 0.0051 20.2 5.1 29 97-125 64-94 (111)
26 2qkd_A Zinc finger protein ZPR 21.9 1.8E+02 0.0061 24.1 5.9 47 28-79 214-261 (404)
27 1row_A SSP-19, MSP-domain prot 21.9 1.2E+02 0.0041 20.2 4.1 29 6-38 10-38 (109)
28 3p7j_A Heterochromatin protein 21.8 62 0.0021 21.2 2.5 18 59-76 36-53 (87)
29 2fmm_A Chromobox protein homol 21.4 54 0.0018 20.6 2.1 23 58-83 25-47 (74)
30 3le4_A Microprocessor complex 21.3 36 0.0012 22.1 1.2 28 104-132 17-44 (79)
31 2els_A Zinc finger protein 406 20.3 31 0.0011 16.7 0.6 11 66-76 8-18 (36)
32 1wfu_A Unnamed protein product 20.3 99 0.0034 20.5 3.4 15 28-42 85-101 (120)
No 1
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=100.00 E-value=5.1e-53 Score=319.84 Aligned_cols=123 Identities=20% Similarity=0.341 Sum_probs=115.5
Q ss_pred CceEEEEEEEEecceeeeeeCCCCCCCCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCeeEE
Q 032792 1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTV 79 (133)
Q Consensus 1 Mv~~~L~vkAeLenV~~l~p~~~~~~p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~re~si 79 (133)
|++++|++||+|+||++|+|. |+|.|+|||||+ |||+|+| |+|+++|++++|||||+||||+|||+|+|++||
T Consensus 9 ~~~~~L~i~AelenVt~L~p~-----~~~~~~fkvkC~~C~E~~~k-v~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 9 MKNTVVRIKAELENVKRLFCD-----DEYLWIFNIRDSTSSLTRDN-IQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp CCCEEEEEEEEEESEEEEECC-----TTCCEEEEEEETTSSCEEEE-EEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred eEEEEEEEEEEEcCcceeecC-----CCcEEEEEEEECCCCcccCC-EEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 999999999999999999997 458999999999 9999999 999999999999999999999999999999999
Q ss_pred EEecCCC-cccccccccCCCcccEEEEEccCceEEeEEeCCCEEEEEecCCeec
Q 032792 80 TMIPGRG-KPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESSPIGLLL 132 (133)
Q Consensus 80 ~i~~~~~-~~~~~e~~~~~~~~~I~~fdCRG~ep~~f~p~~~w~~~s~~~~~~~ 132 (133)
+|++.+. ++|++++ +++|++|++||||||||++|+|++||+|++++|| .|
T Consensus 83 ~i~~~~~~~~y~~~d--~~k~~~i~~FDCRGlEp~eF~p~~~w~a~~~esG-~f 133 (164)
T 1zso_A 83 NFVNTKNSCSYEEVN--NNEWRDFASFECRGIELIDFFPSNNFIVEDTKGK-LY 133 (164)
T ss_dssp EEECCTTTTEEEGGG--TTSCEEEEEEEEESEEEEEECCCSCEEEEETTSC-EE
T ss_pred EEEeCCCCccccccc--CCCceEEEEEECCCeeeEEEecCCcEEEEECCCC-cE
Confidence 9999973 2788764 5799999999999999999999999999999888 54
No 2
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.03 E-value=0.038 Score=35.18 Aligned_cols=34 Identities=29% Similarity=0.720 Sum_probs=26.6
Q ss_pred CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032792 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~re 76 (133)
|+ .|+++|||. |+.+. +.+ +.|..+.+|..|++.
T Consensus 9 Pn-S~Fm~VkCp~C~~~q---~VF------------Sha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 9 PR-SRFLRVKCIDCGNEQ---IVF------------SHPATKVRCLICGAT 43 (63)
T ss_dssp CS-CCEEEEECSSSCCEE---EEE------------SSCSSCEECSSSCCE
T ss_pred CC-CcEEEEECCCCCCee---EEE------------ecCCeEEEccCcCCE
Confidence 64 899999999 99875 223 346778999999875
No 3
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=91.24 E-value=0.091 Score=34.98 Aligned_cols=34 Identities=29% Similarity=0.724 Sum_probs=26.6
Q ss_pred CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032792 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~re 76 (133)
|+ .|+++|||. |+.+. +.+ +.|..+.+|..|+..
T Consensus 26 Pn-S~Fm~VkCp~C~n~q---~VF------------ShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 26 PN-SYFMDVKCAQCQNIQ---MIF------------SNAQSTIICEKCSAI 60 (81)
T ss_dssp CS-CCEEEEECSSSCCEE---EEE------------TTCSSCEECSSSCCE
T ss_pred CC-CcEEEeECCCCCCee---EEE------------ecCccEEEccCCCCE
Confidence 54 799999999 99875 233 256788999999875
No 4
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=90.38 E-value=0.12 Score=33.10 Aligned_cols=32 Identities=38% Similarity=0.744 Sum_probs=25.0
Q ss_pred eEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032792 30 SYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 30 ~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~re 76 (133)
.|+++|||. |+.+. +.+ +.|..+.+|..|++.
T Consensus 3 S~Fm~VKCp~C~niq---~VF------------ShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 3 SRFVKVKCPDCEHEQ---VIF------------DHPSTIVKCIICGRT 35 (66)
T ss_dssp CCEEEEECTTTCCEE---EEE------------SSCSSCEECSSSCCE
T ss_pred ceeEEEECCCCCCce---EEE------------ecCceEEEcccCCCE
Confidence 478999999 99875 233 346788999999875
No 5
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=89.38 E-value=0.1 Score=35.07 Aligned_cols=34 Identities=29% Similarity=0.710 Sum_probs=24.0
Q ss_pred CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032792 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~re 76 (133)
|+ .|+++|||. |+.+. +.+ +.|..+..|..|+..
T Consensus 30 Pn-S~Fm~VkCp~C~~~~---~VF------------ShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 30 PN-SFFMDVKCQGCFNIT---TVF------------SHSQTVVVCPGCQTV 64 (86)
T ss_dssp ----CEEEEECTTTCCEE---EEE------------TTCSSCCCCSSSCCC
T ss_pred CC-CcEeEEECCCCCCee---EEE------------ecCCcEEEccCCCCE
Confidence 54 899999999 99875 232 345678889999875
No 6
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=87.30 E-value=0.22 Score=33.19 Aligned_cols=34 Identities=29% Similarity=0.725 Sum_probs=26.1
Q ss_pred CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032792 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~re 76 (133)
|+ .|+++|||. |+.+. +.+ +.|..+..|..|+..
T Consensus 28 Pn-S~Fm~VkCp~C~~~q---~VF------------Sha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 28 PR-SYFLDVKCPGCLNIT---TVF------------SHAQTAVTCESCSTI 62 (82)
T ss_dssp CC-CCEEEEECTTSCSCE---EEE------------SBCSSCCCCSSSCCC
T ss_pred CC-CcEEEEECCCCCCee---EEE------------ecCCeEEEccccCCE
Confidence 64 899999999 99875 233 345678889999875
No 7
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=67.37 E-value=4.1 Score=28.09 Aligned_cols=21 Identities=33% Similarity=0.833 Sum_probs=18.9
Q ss_pred EEEeeccCCCeeEEEEecCCC
Q 032792 66 LIQKCKFCGREGTVTMIPGRG 86 (133)
Q Consensus 66 fv~KCk~C~re~si~i~~~~~ 86 (133)
+..||.-|+.++|++|+..++
T Consensus 51 mhakcprcgaegsvsivetkn 71 (131)
T 2x5c_A 51 MHAKCPRCGAEGSVSIVETKN 71 (131)
T ss_dssp CEEECTTTSCEEEEEEEECTT
T ss_pred eeccCCCCCCccceEEEEecC
Confidence 568999999999999998875
No 8
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=66.29 E-value=1.2 Score=24.82 Aligned_cols=19 Identities=32% Similarity=0.922 Sum_probs=15.2
Q ss_pred CCCceeeEEEeeccCCCee
Q 032792 59 GGKGTTNLIQKCKFCGREG 77 (133)
Q Consensus 59 gsrg~aNfv~KCk~C~re~ 77 (133)
||.|..-+-..|+||++.-
T Consensus 1 gssgsskikqhcrfckkky 19 (37)
T 2elu_A 1 GSSGSSGIKQHCRFCKKKY 19 (37)
T ss_dssp CCSCCCCCCCEETTTTEEC
T ss_pred CCCchHHHHHHHHHHHHHH
Confidence 5677777888999999863
No 9
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=48.13 E-value=11 Score=20.74 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=13.3
Q ss_pred eEEEeeccCCCeeEE
Q 032792 65 NLIQKCKFCGREGTV 79 (133)
Q Consensus 65 Nfv~KCk~C~re~si 79 (133)
.+.+||+.|+...++
T Consensus 19 ~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 19 VHLLKCMACGAIRPI 33 (36)
T ss_dssp EEEEEEETTTEEEEE
T ss_pred cEEEEhhcCCCcccc
Confidence 689999999998876
No 10
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=46.61 E-value=30 Score=23.55 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=26.8
Q ss_pred ceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCeeE
Q 032792 29 FSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGT 78 (133)
Q Consensus 29 ~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~re~s 78 (133)
-.|.+.+.|. |+.-+.+ .|++. .. -+| -...+|..|+...-
T Consensus 8 ~~~~l~FTC~~C~tRs~k--~iSk~-aY----~~G--vViv~C~gC~n~Hl 49 (100)
T 2e2z_A 8 PKMMIAFTCKKCNTRSSH--TMSKQ-AY----EKG--TVLISCPHCKVRHL 49 (100)
T ss_dssp CEEEEEEEETTTTEEEEE--EEEHH-HH----HTS--EEEEECTTTCCEEE
T ss_pred CcEEEEEEccCCCCcchh--hcCHH-Hh----hCC--EEEEEcCCCccceE
Confidence 4788999999 9876644 44442 11 114 46788999987654
No 11
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=43.79 E-value=25 Score=23.48 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=24.0
Q ss_pred EEec-CCceeeceEEEecCeeEEeCCCCcee-e-EEEeeccCCCe
Q 032792 35 LKCG-CGELSQKETCVSLAETLPTQGGKGTT-N-LIQKCKFCGRE 76 (133)
Q Consensus 35 vkCt-C~e~~~~~v~i~~~e~~e~~gsrg~a-N-fv~KCk~C~re 76 (133)
.+|. |+..+- +........+..|-.-.. + =.+.|..|+.+
T Consensus 3 M~Cp~Cg~~~~--~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~ 45 (133)
T 3o9x_A 3 MKCPVCHQGEM--VSGIKDIPYTFRGRKTVLKGIHGLYCVHCEES 45 (133)
T ss_dssp CBCTTTSSSBE--EEEEEEEEEEETTEEEEEEEEEEEEESSSSCE
T ss_pred cCCCcCCCCce--eeceEEEEEEECCEEEEECCCceeECCCCCCE
Confidence 4799 987643 333444566666544333 2 36778888876
No 12
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=43.42 E-value=18 Score=26.67 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=18.6
Q ss_pred EEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032792 34 KLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 34 kvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~re 76 (133)
+-+|+ ||.+++.. +.|. +|+.|+..
T Consensus 155 ~~~C~~CG~~~~g~---------~~p~---------~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGT---------GAPE---------LCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEE---------ECCS---------BCTTTCCB
T ss_pred eEEECCCCCEeeCC---------CCCC---------CCCCCcCC
Confidence 57899 99998632 3443 89999986
No 13
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=41.58 E-value=8.8 Score=25.63 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=25.2
Q ss_pred EEEEEec-CCceeeceEEEe-cC----eeEEeCCCCc-----eeeEEEeeccCCCeeE
Q 032792 32 FFKLKCG-CGELSQKETCVS-LA----ETLPTQGGKG-----TTNLIQKCKFCGREGT 78 (133)
Q Consensus 32 ~fkvkCt-C~e~~~~~v~i~-~~----e~~e~~gsrg-----~aNfv~KCk~C~re~s 78 (133)
+-.-||+ ||+.- +|--+- +. .-.|+=..|+ --.|++||+.|+-+-.
T Consensus 6 ~~~~~~PlCG~~L-~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFy 62 (95)
T 2k5c_A 6 HHMAKCPICGSPL-KWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFY 62 (95)
T ss_dssp --CEECSSSCCEE-CHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEE
T ss_pred cccccCCcCCCcc-CHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHh
Confidence 3457899 99875 442221 11 1112222232 2369999999998844
No 14
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=38.92 E-value=21 Score=22.02 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=16.5
Q ss_pred eCCCCceeeEEEeeccCCCe
Q 032792 57 TQGGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 57 ~~gsrg~aNfv~KCk~C~re 76 (133)
...++|+-+|.+|||.|...
T Consensus 21 ~~~~~Gel~fLvKWKg~~~~ 40 (65)
T 3kup_A 21 ATDSSGELMFLMKWKDSDEA 40 (65)
T ss_dssp EECTTSSCEEEEEETTCSCC
T ss_pred EEcCCCcEEEEEEECCCChh
Confidence 34577999999999999864
No 15
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=35.18 E-value=29 Score=22.58 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=9.1
Q ss_pred EEeeccCCCe
Q 032792 67 IQKCKFCGRE 76 (133)
Q Consensus 67 v~KCk~C~re 76 (133)
.|+|+.|++.
T Consensus 45 iW~C~~Cg~~ 54 (83)
T 1vq8_Z 45 IWQCSYCDYK 54 (83)
T ss_dssp EEEETTTCCE
T ss_pred eEECCCCCCE
Confidence 8999999986
No 16
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=32.55 E-value=21 Score=23.47 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=11.2
Q ss_pred EEeeccCCCeeEEEEec
Q 032792 67 IQKCKFCGREGTVTMIP 83 (133)
Q Consensus 67 v~KCk~C~re~si~i~~ 83 (133)
++.|.+|+.+.|+.+.-
T Consensus 23 ~F~CPfCnh~~sV~vki 39 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKM 39 (85)
T ss_dssp CCCCTTTCCSSCEEEEE
T ss_pred eEcCCCCCCCCeEEEEE
Confidence 45677777776666643
No 17
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=30.89 E-value=21 Score=18.67 Aligned_cols=12 Identities=25% Similarity=0.974 Sum_probs=9.2
Q ss_pred EEEEec-CCceee
Q 032792 33 FKLKCG-CGELSQ 44 (133)
Q Consensus 33 fkvkCt-C~e~~~ 44 (133)
|+|+|. |...-+
T Consensus 5 f~vqcpvcqq~mp 17 (29)
T 3vhs_A 5 FQVQCPVCQQMMP 17 (29)
T ss_dssp CEEECTTTCCEEE
T ss_pred eeeeChHHHHhCc
Confidence 789999 987543
No 18
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=29.22 E-value=28 Score=26.90 Aligned_cols=23 Identities=9% Similarity=-0.112 Sum_probs=19.2
Q ss_pred ceEEeEEeCCCEEEEEecCCeec
Q 032792 110 YEPVDFVFGVGWKVESSPIGLLL 132 (133)
Q Consensus 110 ~ep~~f~p~~~w~~~s~~~~~~~ 132 (133)
+.=+.|+|+|.+.|.++++|+.+
T Consensus 362 V~svafspdG~~LA~as~~Gv~l 384 (393)
T 4gq1_A 362 IVDFCWHQDGSHLAIATEGSVLL 384 (393)
T ss_dssp EEEEEECTTSSEEEEEESSEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEE
Confidence 33467999999999999999865
No 19
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=28.83 E-value=41 Score=19.44 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=15.6
Q ss_pred eeccCCCeeEEEEecCCC
Q 032792 69 KCKFCGREGTVTMIPGRG 86 (133)
Q Consensus 69 KCk~C~re~si~i~~~~~ 86 (133)
.|+.|+...++.-+|..+
T Consensus 12 ECrgCr~~C~aeqvPvd~ 29 (45)
T 2liy_A 12 ECRGCRYKCRAEQVPVEG 29 (45)
T ss_dssp GGTTCCSEEEEEEEESSC
T ss_pred hhcCcccccceeeccccC
Confidence 599999999999988754
No 20
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=28.08 E-value=25 Score=26.25 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=18.0
Q ss_pred EEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032792 34 KLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 34 kvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~re 76 (133)
+-+|+ ||.+++. +.| ++|+.|+..
T Consensus 171 ~~~C~~CG~i~~g----------~~p---------~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG----------EDF---------EKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES----------SCC---------SBCTTTCCB
T ss_pred EEEECCCCCEEcC----------cCC---------CCCCCCCCC
Confidence 56899 9999863 122 899999875
No 21
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=27.77 E-value=29 Score=25.23 Aligned_cols=22 Identities=27% Similarity=0.712 Sum_probs=16.2
Q ss_pred Eec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032792 36 KCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 36 kCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~re 76 (133)
+|+ ||.++.. +.|. +|+.|+..
T Consensus 140 ~C~~CG~i~~~----------~~p~---------~CP~Cg~~ 162 (170)
T 3pwf_A 140 ICPICGYTAVD----------EAPE---------YCPVCGAP 162 (170)
T ss_dssp ECTTTCCEEES----------CCCS---------BCTTTCCB
T ss_pred EeCCCCCeeCC----------CCCC---------CCCCCCCC
Confidence 499 9999852 2442 89999864
No 22
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=25.27 E-value=69 Score=20.40 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=16.5
Q ss_pred eCCCCceeeEEEeeccCCCe
Q 032792 57 TQGGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 57 ~~gsrg~aNfv~KCk~C~re 76 (133)
...++|+-.|.+|||.|...
T Consensus 18 ~~~~~Gel~fLvKWKg~~~~ 37 (78)
T 3q6s_A 18 ATDSSGELMFLMKWKNSDEA 37 (78)
T ss_dssp EECTTSSCEEEEEETTCSCE
T ss_pred EEcCCCcEEEEEEECCCChh
Confidence 34577999999999999964
No 23
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=25.08 E-value=65 Score=20.44 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=14.1
Q ss_pred eCCCCceeeEEEeeccCCCe
Q 032792 57 TQGGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 57 ~~gsrg~aNfv~KCk~C~re 76 (133)
...++|+-.|.+|||.|...
T Consensus 31 ~t~~~Gel~fLVKWKg~~e~ 50 (75)
T 3i3c_A 31 ATDSCGDLMFLMKWKDTDEA 50 (75)
T ss_dssp EEC---CCEEEEEETTSSCE
T ss_pred EEccCCcEEEEEEECCCChh
Confidence 34567899999999999884
No 24
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=25.02 E-value=40 Score=23.46 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=9.3
Q ss_pred EEeeccCCCe
Q 032792 67 IQKCKFCGRE 76 (133)
Q Consensus 67 v~KCk~C~re 76 (133)
.|+|+.|++.
T Consensus 78 IW~C~~Cgk~ 87 (116)
T 3cc2_Z 78 IWQCSYCDYK 87 (116)
T ss_dssp EEEETTTCCE
T ss_pred eEECCCCCCE
Confidence 8999999987
No 25
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=24.74 E-value=1.5e+02 Score=20.18 Aligned_cols=29 Identities=7% Similarity=0.059 Sum_probs=24.4
Q ss_pred CCcccEEEEEccCceEEeEEeC--CCEEEEE
Q 032792 97 GGFSPLMLFDCRGYEPVDFVFG--VGWKVES 125 (133)
Q Consensus 97 ~~~~~I~~fdCRG~ep~~f~p~--~~w~~~s 125 (133)
.++-.|..+.=.+++++|+.|+ |+|+-..
T Consensus 64 ~n~GrI~~It~~~I~l~E~v~Dg~G~W~eR~ 94 (111)
T 2lc4_A 64 RNDGKVVGISEGKIDVIEIVPDGEGNWLERP 94 (111)
T ss_dssp TTTEEEEEECSSEEEEEEEEECSSSCEEEEE
T ss_pred cCCCEEEEEeCCeEEEEEEEECCCCCEEEee
Confidence 3567899999999999999997 8996543
No 26
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=21.94 E-value=1.8e+02 Score=24.14 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=35.0
Q ss_pred CceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCeeEE
Q 032792 28 NFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTV 79 (133)
Q Consensus 28 ~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~re~si 79 (133)
+-.+.|...|. |+..-. .+.-.+++|-.|-.-=..+.|..|+-.++=
T Consensus 214 ~ev~~~~s~Cp~C~~~~~-----t~~~~~~IP~F~eViims~~C~~CGyr~ne 261 (404)
T 2qkd_A 214 NEVLQFNTNCPECNAPAQ-----TNMKLVQIPHFKEVIIMATNCENCGHRTNE 261 (404)
T ss_dssp CCEEEEEECCTTTCCTTC-----EEEEEECCTTSCCEEEEEEECSSSCCEEEE
T ss_pred cceeeecccCccCCCccE-----EEEEEEeCCCCCcEEEEEEECCCCCCcccc
Confidence 34788999999 996422 222356789888888899999999987653
No 27
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=21.93 E-value=1.2e+02 Score=20.20 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=17.1
Q ss_pred EEEEEEecceeeeeeCCCCCCCCceEEEEEEec
Q 032792 6 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG 38 (133)
Q Consensus 6 L~vkAeLenV~~l~p~~~~~~p~~~~~fkvkCt 38 (133)
|.+.++ ++...|..... -+....||||||
T Consensus 10 l~F~~~-~~~~~l~L~N~---t~~~vaFKVKtT 38 (109)
T 1row_A 10 CTVPAA-GVSSTHKLVNG---GAEKIVFKIKSS 38 (109)
T ss_dssp EEEETT-CEEEEEEEEEC---SSSCEEEEEEES
T ss_pred eEEeCC-CCeEEEEEEcC---CCCeEEEEEEeC
Confidence 444443 33455555431 235799999999
No 28
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=21.79 E-value=62 Score=21.24 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=15.2
Q ss_pred CCCceeeEEEeeccCCCe
Q 032792 59 GGKGTTNLIQKCKFCGRE 76 (133)
Q Consensus 59 gsrg~aNfv~KCk~C~re 76 (133)
.++|+-+|.+|||.|...
T Consensus 36 ~~~Gel~fLVKWKg~~e~ 53 (87)
T 3p7j_A 36 DNNGRLTFLIQFKGVDQA 53 (87)
T ss_dssp EETTEEEEEEEETTCSSC
T ss_pred ccCCcEEEEEEECCCCcc
Confidence 356899999999999864
No 29
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=21.43 E-value=54 Score=20.61 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=17.5
Q ss_pred CCCCceeeEEEeeccCCCeeEEEEec
Q 032792 58 QGGKGTTNLIQKCKFCGREGTVTMIP 83 (133)
Q Consensus 58 ~gsrg~aNfv~KCk~C~re~si~i~~ 83 (133)
..++|+-.|.+|||.|.. +++++
T Consensus 25 ~~~~Gel~fLvkWkg~d~---~dlVp 47 (74)
T 2fmm_A 25 TDSSGELMFLMKWKNSDE---ADLVP 47 (74)
T ss_dssp EEETTEEEEEEEETTCSC---CEEEE
T ss_pred EcCCCcEEEEEEECCCCc---ccEEE
Confidence 345689999999999987 34544
No 30
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=21.33 E-value=36 Score=22.10 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=17.4
Q ss_pred EEEccCceEEeEEeCCCEEEEEecCCeec
Q 032792 104 LFDCRGYEPVDFVFGVGWKVESSPIGLLL 132 (133)
Q Consensus 104 ~fdCRG~ep~~f~p~~~w~~~s~~~~~~~ 132 (133)
.++=||.++.+=-| +||+...-.+|.++
T Consensus 17 VL~~~g~~~~~~LP-eGW~~v~H~SGmP~ 44 (79)
T 3le4_A 17 VLKSRGRPPTEPLP-DGWIMTFHNSGVPV 44 (79)
T ss_dssp -------CCCCCCC-TTEEEEECTTSSEE
T ss_pred HhhhcCCCcCCcCC-CccEEEEecCCceE
Confidence 34558888777777 89999999998765
No 31
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.28 E-value=31 Score=16.75 Aligned_cols=11 Identities=27% Similarity=0.905 Sum_probs=8.2
Q ss_pred EEEeeccCCCe
Q 032792 66 LIQKCKFCGRE 76 (133)
Q Consensus 66 fv~KCk~C~re 76 (133)
-.++|..|++.
T Consensus 8 k~~~C~~C~k~ 18 (36)
T 2els_A 8 KIFTCEYCNKV 18 (36)
T ss_dssp CCEECTTTCCE
T ss_pred CCEECCCCCce
Confidence 34789888875
No 32
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=20.25 E-value=99 Score=20.47 Aligned_cols=15 Identities=40% Similarity=0.591 Sum_probs=11.6
Q ss_pred CceEEEEEEec--CCce
Q 032792 28 NFSYFFKLKCG--CGEL 42 (133)
Q Consensus 28 ~~~~~fkvkCt--C~e~ 42 (133)
+..|.|+|++. .|.-
T Consensus 85 ~t~Y~frV~A~n~~G~s 101 (120)
T 1wfu_A 85 RTLYKFRLKVTSPSGEY 101 (120)
T ss_dssp TCEEEEEEEEECSSSCE
T ss_pred CCEEEEEEEEECCCCCC
Confidence 46899999998 6653
Done!