BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032793
MASIVPLQSVYASSTTKNLDVARSPSVSSFFAVPRPINRTQKNKKRSLTVVAAAGDVSAD
GTTYLIAGAAAVALLGTGFPILFSRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVCA
RCNGLGKLNQIDK

High Scoring Gene Products

Symbol, full name Information P value
AT5G02160 protein from Arabidopsis thaliana 5.5e-22

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032793
        (133 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2185128 - symbol:AT5G02160 "AT5G02160" species...   256  5.5e-22   1


>TAIR|locus:2185128 [details] [associations]
            symbol:AT5G02160 "AT5G02160" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0030003 "cellular cation homeostasis" evidence=RCA] [GO:0030154
            "cell differentiation" evidence=RCA] [GO:0043085 "positive
            regulation of catalytic activity" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0070838 "divalent metal ion transport" evidence=RCA]
            InterPro:IPR001305 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009535 Gene3D:2.10.230.10 EMBL:AF325034 EMBL:BT021140
            EMBL:AK118635 IPI:IPI00944277 RefSeq:NP_195836.5 UniGene:At.25262
            STRING:Q9FPH2 PaxDb:Q9FPH2 PRIDE:Q9FPH2 EnsemblPlants:AT5G02160.1
            GeneID:831910 KEGG:ath:AT5G02160 TAIR:At5g02160 eggNOG:NOG245480
            HOGENOM:HOG000241159 OMA:QIVCANC PhylomeDB:Q9FPH2
            ProtClustDB:CLSN2695305 Genevestigator:Q9FPH2 Uniprot:Q9FPH2
        Length = 129

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 66/134 (49%), Positives = 71/134 (52%)

Query:     3 SIVP-LQSVYASSTTKNLDVARSPSVSSFFAVPRPINRT-QKNKKRSLXXXXXXXXXXXX 60
             +I P LQ+ + SST  N  +  S S  S    P P N    KNK+ S             
Sbjct:     2 TIAPALQTTFVSST--NF-LKHSSSWGS----PSPNNVILPKNKRSSSSVVVAAVGDVSS 54

Query:    61 XXXXXXXXXXXXXXXX-XXFPILFSRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVC 119
                                FPILF RKD CPECDGAGFVRK G TLRANAARKD  QIVC
Sbjct:    55 DGTIYLIGGAIAVALVGTAFPILFKRKDTCPECDGAGFVRKGGVTLRANAARKDLPQIVC 114

Query:   120 ARCNGLGKLNQIDK 133
             A CNGLGKLNQIDK
Sbjct:   115 ANCNGLGKLNQIDK 128


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      133       103   0.00091  102 3  11 22  0.38    30
                                                     29  0.49    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  482 (51 KB)
  Total size of DFA:  94 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.39u 0.09s 8.48t   Elapsed:  00:00:01
  Total cpu time:  8.39u 0.09s 8.48t   Elapsed:  00:00:01
  Start:  Fri May 10 03:41:44 2013   End:  Fri May 10 03:41:45 2013

Back to top