Query 032793
Match_columns 133
No_of_seqs 22 out of 24
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 09:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1exk_A DNAJ protein; extended 96.8 0.00029 1E-08 44.6 0.9 14 115-128 49-62 (79)
2 2bx9_A Anti-trap, AT, tryptoph 96.1 0.002 7E-08 40.8 1.4 27 87-129 10-36 (53)
3 2ctt_A DNAJ homolog subfamily 96.0 0.0031 1.1E-07 42.2 2.3 33 88-128 47-79 (104)
4 1exk_A DNAJ protein; extended 96.0 0.0027 9.3E-08 40.0 1.7 11 118-128 66-76 (79)
5 1nlt_A Protein YDJ1, mitochond 95.4 0.0067 2.3E-07 46.5 2.2 55 71-129 23-93 (248)
6 2ctt_A DNAJ homolog subfamily 95.3 0.0038 1.3E-07 41.8 0.6 41 75-128 17-57 (104)
7 1nlt_A Protein YDJ1, mitochond 94.8 0.01 3.4E-07 45.5 1.6 34 81-128 75-108 (248)
8 3lcz_A YCZA, inhibitor of trap 93.7 0.025 8.5E-07 35.8 1.4 26 87-128 10-35 (53)
9 3pih_A Uvrabc system protein A 88.8 0.18 6.1E-06 45.7 2.2 47 80-132 243-289 (916)
10 2ygr_A Uvrabc system protein A 84.7 0.43 1.5E-05 44.2 2.4 48 80-132 269-316 (993)
11 3lcz_A YCZA, inhibitor of trap 84.6 0.26 8.8E-06 31.0 0.6 17 87-103 24-40 (53)
12 2bx9_A Anti-trap, AT, tryptoph 82.7 0.38 1.3E-05 30.2 0.8 16 86-101 23-38 (53)
13 2r6f_A Excinuclease ABC subuni 82.4 0.47 1.6E-05 43.9 1.7 47 80-132 261-307 (972)
14 2bw2_A Bypass of forespore C; 80.3 0.68 2.3E-05 34.6 1.6 21 80-100 55-77 (140)
15 1dl6_A Transcription factor II 76.4 1.7 5.9E-05 27.2 2.4 26 87-123 12-37 (58)
16 1pft_A TFIIB, PFTFIIBN; N-term 76.2 3.7 0.00013 24.1 3.8 35 87-132 6-40 (50)
17 4bbr_M Transcription initiatio 70.6 2.9 9.8E-05 33.4 3.0 26 86-122 21-48 (345)
18 3agx_A DNAJ homolog subfamily 63.8 3.1 0.00011 30.2 1.8 46 73-120 16-62 (181)
19 1rmd_A RAG1; V(D)J recombinati 54.2 2.9 9.9E-05 27.2 0.2 46 86-131 58-105 (116)
20 2vf7_A UVRA2, excinuclease ABC 53.7 4.1 0.00014 36.7 1.1 21 80-100 139-162 (842)
21 1qyp_A RNA polymerase II; tran 51.6 10 0.00035 22.9 2.4 45 78-124 7-51 (57)
22 2r6f_A Excinuclease ABC subuni 51.4 4.7 0.00016 37.4 1.1 26 75-100 273-305 (972)
23 2ygr_A Uvrabc system protein A 51.1 4.9 0.00017 37.3 1.2 21 80-100 291-314 (993)
24 3pih_A Uvrabc system protein A 50.7 5 0.00017 36.4 1.2 27 75-101 255-288 (916)
25 2bx2_L Ribonuclease E, RNAse E 49.3 6.5 0.00022 34.0 1.7 16 87-102 409-424 (517)
26 2akl_A PHNA-like protein PA012 46.1 8.3 0.00028 29.3 1.6 24 87-123 28-51 (138)
27 3o9x_A Uncharacterized HTH-typ 43.0 13 0.00045 24.2 2.0 37 88-124 4-44 (133)
28 2vf7_A UVRA2, excinuclease ABC 42.2 13 0.00046 33.4 2.6 33 87-126 639-671 (842)
29 2jrp_A Putative cytoplasmic pr 40.7 14 0.00047 25.4 1.9 33 84-126 29-61 (81)
30 2js4_A UPF0434 protein BB2007; 39.4 20 0.00068 23.4 2.4 24 88-123 10-33 (70)
31 1nui_A DNA primase/helicase; z 39.1 12 0.00042 27.4 1.5 34 83-127 11-44 (255)
32 1odh_A MGCM1; transcription fa 37.6 4.2 0.00014 31.9 -1.3 21 108-130 102-122 (174)
33 2jr6_A UPF0434 protein NMA0874 37.4 24 0.00081 22.9 2.6 24 88-123 10-33 (68)
34 2jne_A Hypothetical protein YF 36.8 15 0.0005 26.6 1.6 33 83-125 58-90 (101)
35 3k1f_M Transcription initiatio 36.4 25 0.00085 28.0 3.0 28 86-124 21-50 (197)
36 2hf1_A Tetraacyldisaccharide-1 35.2 26 0.00088 22.8 2.5 24 88-123 10-33 (68)
37 2pk7_A Uncharacterized protein 34.3 24 0.00083 22.9 2.2 25 87-123 9-33 (69)
38 3hct_A TNF receptor-associated 34.1 16 0.00054 23.9 1.3 44 88-132 55-100 (118)
39 3j20_Y 30S ribosomal protein S 33.9 32 0.0011 21.0 2.6 25 87-123 20-44 (50)
40 2jny_A Uncharacterized BCR; st 32.6 30 0.001 22.5 2.5 24 88-123 12-35 (67)
41 3ga8_A HTH-type transcriptiona 31.8 24 0.00082 22.2 1.9 36 88-123 4-43 (78)
42 2k4x_A 30S ribosomal protein S 30.7 29 0.001 21.6 2.1 26 86-123 18-43 (55)
43 3pmq_A Decaheme cytochrome C M 29.4 5.2 0.00018 35.7 -2.2 45 74-128 179-223 (669)
44 3k7a_M Transcription initiatio 28.8 22 0.00076 27.8 1.6 28 86-124 21-50 (345)
45 3a43_A HYPD, hydrogenase nicke 27.8 28 0.00097 24.6 1.9 20 87-106 108-127 (139)
46 2kdx_A HYPA, hydrogenase/ureas 27.2 30 0.001 23.3 1.8 35 45-80 26-61 (119)
47 1p9r_A General secretion pathw 24.9 33 0.0011 27.8 2.0 18 81-98 332-349 (418)
48 1vd4_A Transcription initiatio 24.7 25 0.00085 19.9 0.9 32 88-124 16-47 (62)
49 2ww6_A Fibritin, T4 fibritin; 22.6 34 0.0012 19.8 1.2 12 92-103 8-19 (27)
50 2lcq_A Putative toxin VAPC6; P 22.3 28 0.00097 24.2 1.0 8 117-124 149-156 (165)
51 2riq_A Poly [ADP-ribose] polym 21.9 20 0.00068 26.9 0.1 14 81-94 73-86 (160)
52 2b9d_A E7 protein; zinc finger 21.0 20 0.00068 22.5 -0.1 37 88-124 10-49 (52)
No 1
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=96.81 E-value=0.00029 Score=44.57 Aligned_cols=14 Identities=50% Similarity=1.044 Sum_probs=10.0
Q ss_pred ceEeecccCCCccc
Q 032793 115 VQIVCARCNGLGKL 128 (133)
Q Consensus 115 ~qivc~~cnglgkl 128 (133)
.|..|+.|+|-|++
T Consensus 49 ~~~~C~~C~G~G~~ 62 (79)
T 1exk_A 49 VQQTCPHCQGRGTL 62 (79)
T ss_dssp EEEECTTTTTSSEE
T ss_pred EeeECcCCCCccEE
Confidence 45678888887765
No 2
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.06 E-value=0.002 Score=40.82 Aligned_cols=27 Identities=33% Similarity=0.838 Sum_probs=22.2
Q ss_pred CCCCCCCCcceeeeccccchhhhhccccceEeecccCCCcccc
Q 032793 87 DMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLGKLN 129 (133)
Q Consensus 87 d~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglgkl~ 129 (133)
.+||.|.|.|.+. ...|+.|+|.|+.-
T Consensus 10 ~~C~~C~GsG~~~----------------~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIE----------------GTPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEET----------------TEECTTTTTSSEEE
T ss_pred ccCCCCcceeccC----------------CCCCccCCCCccEE
Confidence 4799999999873 26799999999763
No 3
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.0031 Score=42.23 Aligned_cols=33 Identities=27% Similarity=0.661 Sum_probs=19.6
Q ss_pred CCCCCCCcceeeeccccchhhhhccccceEeecccCCCccc
Q 032793 88 MCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLGKL 128 (133)
Q Consensus 88 ~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglgkl 128 (133)
+||.|.|.|.++..- .. -+.|..|+.|+|-|++
T Consensus 47 ~C~~C~G~G~~~~~~-------G~-~~~~~~C~~C~G~G~~ 79 (104)
T 2ctt_A 47 HCHYCGGSGMETINT-------GP-FVMRSTCRRCGGRGSI 79 (104)
T ss_dssp ECSSSSSSCEEEEEE-------TT-EEEEEECSSSSSSSEE
T ss_pred cCCCCCCCEEEEEEe-------CC-EEEEEECCcCCCcceE
Confidence 466666666664331 01 2356678888887765
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=95.96 E-value=0.0027 Score=40.04 Aligned_cols=11 Identities=36% Similarity=1.229 Sum_probs=5.6
Q ss_pred eecccCCCccc
Q 032793 118 VCARCNGLGKL 128 (133)
Q Consensus 118 vc~~cnglgkl 128 (133)
.|+.|+|-|.+
T Consensus 66 ~C~~C~G~G~~ 76 (79)
T 1exk_A 66 PCNKCHGHGRV 76 (79)
T ss_dssp BCGGGTTSSEE
T ss_pred cCCCCCCeEEE
Confidence 45555555543
No 5
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=95.39 E-value=0.0067 Score=46.50 Aligned_cols=55 Identities=20% Similarity=0.437 Sum_probs=32.9
Q ss_pred HHHHhcccceeeeecCCCCCCCCCcc----------------eeeeccccchhhhhccccceEeecccCCCcccc
Q 032793 71 AVALLGTGFPILFSRKDMCPECDGAG----------------FVRKSGATLRANAARKDEVQIVCARCNGLGKLN 129 (133)
Q Consensus 71 AvalvGTAfpIlfsRkd~CPECdGaG----------------Fvrk~g~~l~anaArkd~~qivc~~cnglgkl~ 129 (133)
-=+..|+-..|-+.|+..|+.|+|.| .+...-.. .. ---|.|..|+.|+|-|+.-
T Consensus 23 ee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~--g~--~~~~~~~~C~~C~G~G~~i 93 (248)
T 1nlt_A 23 EELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQM--GP--MIQRFQTECDVCHGTGDII 93 (248)
T ss_dssp THHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEES--SS--EEEEEECSCTTCSSSSSCC
T ss_pred HHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEec--Cc--eEEEEEEcCCCCCCcCEEe
Confidence 34567888888888876666555555 43221100 00 1124677899999999764
No 6
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.32 E-value=0.0038 Score=41.85 Aligned_cols=41 Identities=24% Similarity=0.481 Sum_probs=31.8
Q ss_pred hcccceeeeecCCCCCCCCCcceeeeccccchhhhhccccceEeecccCCCccc
Q 032793 75 LGTGFPILFSRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLGKL 128 (133)
Q Consensus 75 vGTAfpIlfsRkd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglgkl 128 (133)
.|.-..|-+.|...|+.|+|.|- +. ......|+.|+|-|..
T Consensus 17 ~G~~~~i~~~~~~~C~~C~G~G~--~~-----------g~~~~~C~~C~G~G~~ 57 (104)
T 2ctt_A 17 KGVNKEFTVNIMDTCERCNGKGN--EP-----------GTKVQHCHYCGGSGME 57 (104)
T ss_dssp SSSCTTCCSSCCEECSSSSSSSS--CT-----------TCCCEECSSSSSSCEE
T ss_pred CCCEEEEEeeeeeECCCCcCCcc--CC-----------CCCCccCCCCCCCEEE
Confidence 47777888999999999999985 21 1223579999999965
No 7
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=94.77 E-value=0.01 Score=45.51 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=26.2
Q ss_pred eeeecCCCCCCCCCcceeeeccccchhhhhccccceEeecccCCCccc
Q 032793 81 ILFSRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLGKL 128 (133)
Q Consensus 81 IlfsRkd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglgkl 128 (133)
.++.-.-+||.|.|.|.+... ...|+.|+|-|..
T Consensus 75 ~~~~~~~~C~~C~G~G~~i~~--------------~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 75 MIQRFQTECDVCHGTGDIIDP--------------KDRCKSCNGKKVE 108 (248)
T ss_dssp EEEEEECSCTTCSSSSSCCCT--------------TSBCSSSTTSCEE
T ss_pred eEEEEEEcCCCCCCcCEEecc--------------CCCCcccCCCceE
Confidence 556678899999999987621 1269999999865
No 8
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=93.66 E-value=0.025 Score=35.77 Aligned_cols=26 Identities=35% Similarity=0.933 Sum_probs=18.7
Q ss_pred CCCCCCCCcceeeeccccchhhhhccccceEeecccCCCccc
Q 032793 87 DMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLGKL 128 (133)
Q Consensus 87 d~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglgkl 128 (133)
.+||+|.|.|-+-+ -.|+.|+|-|..
T Consensus 10 ~~C~~C~GsG~~i~----------------~~C~~C~G~G~v 35 (53)
T 3lcz_A 10 TTCPNCNGSGREEP----------------EPCPKCLGKGVI 35 (53)
T ss_dssp EECTTTTTSCEETT----------------EECTTTTTSSEE
T ss_pred ccCcCCcccccCCC----------------CcCCCCCCcEEE
Confidence 36888888886542 468888888764
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=88.76 E-value=0.18 Score=45.73 Aligned_cols=47 Identities=32% Similarity=0.627 Sum_probs=32.5
Q ss_pred eeeeecCCCCCCCCCcceeeeccccchhhhhccccceEeecccCCCccccccC
Q 032793 80 PILFSRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLGKLNQID 132 (133)
Q Consensus 80 pIlfsRkd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglgkl~q~d 132 (133)
..+||.+-.||+|. ..|-.-+-....-|. .+--|+.|.|+|+.-.+|
T Consensus 243 ~~~~s~~~~c~~~~-~~~~~~~~~~fsfn~-----p~g~C~~C~G~G~~~~~d 289 (916)
T 3pih_A 243 SKIFSENLMCPVCG-IGFPEITPKLFSFNS-----PYGACPNCHGLGFTFEVD 289 (916)
T ss_dssp EEEEESSCBCTTTC-CCCCCCSGGGGCTTS-----TTTBCTTTTTSSEEEEEC
T ss_pred ceeecccccCcccC-CccCCCCHhhcCCCC-----CCCcCCeeecccceEecC
Confidence 46799999999994 333333333333333 467899999999987776
No 10
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=84.74 E-value=0.43 Score=44.19 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=33.0
Q ss_pred eeeeecCCCCCCCCCcceeeeccccchhhhhccccceEeecccCCCccccccC
Q 032793 80 PILFSRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLGKLNQID 132 (133)
Q Consensus 80 pIlfsRkd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglgkl~q~d 132 (133)
.++||.+-.||+|..-.|-.-+-....-| ..+--|+.|.|+|..-.+|
T Consensus 269 ~~~~s~~~~c~~~g~~~~~~~~p~~FSfN-----~p~GaCp~C~G~G~~~~~d 316 (993)
T 2ygr_A 269 EQRFSEKLACPNGHALAVDDLEPRSFSFN-----SPYGACPDCSGLGIRKEVD 316 (993)
T ss_dssp CEEEESSCBCTTCCCCSCSCCCGGGGCTT-----STTTBCTTTTTSCEEEEEC
T ss_pred ceeecccccCCCCCCcccCCCChhhcCcC-----CCCCCCCCCcCccceeecC
Confidence 47899999999996343332222233333 3456799999999987776
No 11
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=84.59 E-value=0.26 Score=31.03 Aligned_cols=17 Identities=29% Similarity=0.835 Sum_probs=14.7
Q ss_pred CCCCCCCCcceeeeccc
Q 032793 87 DMCPECDGAGFVRKSGA 103 (133)
Q Consensus 87 d~CPECdGaGFvrk~g~ 103 (133)
+.||.|.|.|.|++...
T Consensus 24 ~~C~~C~G~G~v~~~~G 40 (53)
T 3lcz_A 24 EPCPKCLGKGVILTAQG 40 (53)
T ss_dssp EECTTTTTSSEEECHHH
T ss_pred CcCCCCCCcEEEEEEeC
Confidence 88999999999987643
No 12
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=82.67 E-value=0.38 Score=30.24 Aligned_cols=16 Identities=31% Similarity=0.887 Sum_probs=13.9
Q ss_pred CCCCCCCCCcceeeec
Q 032793 86 KDMCPECDGAGFVRKS 101 (133)
Q Consensus 86 kd~CPECdGaGFvrk~ 101 (133)
+..||+|.|.|.+++.
T Consensus 23 ~~~C~~C~G~G~v~~~ 38 (53)
T 2bx9_A 23 GTPCPACSGKGVILTA 38 (53)
T ss_dssp TEECTTTTTSSEEECH
T ss_pred CCCCccCCCCccEEEE
Confidence 4689999999999874
No 13
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=82.42 E-value=0.47 Score=43.89 Aligned_cols=47 Identities=30% Similarity=0.559 Sum_probs=31.5
Q ss_pred eeeeecCCCCCCCCCcceeeeccccchhhhhccccceEeecccCCCccccccC
Q 032793 80 PILFSRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLGKLNQID 132 (133)
Q Consensus 80 pIlfsRkd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglgkl~q~d 132 (133)
.++||.+-.||+|. ..|-.-+-....-| ..+--|+.|.|+|..-.+|
T Consensus 261 ~~~~s~~~~cp~~g-~~~~~~~p~~FSfN-----~p~GaCp~C~G~G~~~~~d 307 (972)
T 2r6f_A 261 ELLFSEKHACPYCG-FSIGELEPRLFSFN-----SPFGACPDCDGLGAKLEVD 307 (972)
T ss_dssp CEEEESSEECTTTC-CEEECCCGGGGCSS-----STTTBCTTTTSCCEEEEEC
T ss_pred ceeeeccccCCCCC-CcCCCCChhhcCcC-----CCCCCCCCCcCccceEeeC
Confidence 46799999999995 33322222223333 3456799999999987776
No 14
>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis}
Probab=80.30 E-value=0.68 Score=34.56 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=17.6
Q ss_pred eeeeecC--CCCCCCCCcceeee
Q 032793 80 PILFSRK--DMCPECDGAGFVRK 100 (133)
Q Consensus 80 pIlfsRk--d~CPECdGaGFvrk 100 (133)
.|+|+|+ |+||+|+.-||+-=
T Consensus 55 ~vi~~k~VdDisP~~K~ngY~Gi 77 (140)
T 2bw2_A 55 YVLFRKQMDDISPLSKVNGYIGV 77 (140)
T ss_dssp EEEEEEECSSCCTGGGTCCCEEE
T ss_pred eEEEEEEccccChHHhcCceEEE
Confidence 5777776 99999999999754
No 15
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=76.37 E-value=1.7 Score=27.24 Aligned_cols=26 Identities=23% Similarity=0.561 Sum_probs=18.4
Q ss_pred CCCCCCCCcceeeeccccchhhhhccccceEeecccC
Q 032793 87 DMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCN 123 (133)
Q Consensus 87 d~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cn 123 (133)
-.||+|.+.-++.. .+.-.+||..|-
T Consensus 12 ~~Cp~C~~~~lv~D-----------~~~ge~vC~~CG 37 (58)
T 1dl6_A 12 VTCPNHPDAILVED-----------YRAGDMICPECG 37 (58)
T ss_dssp CSBTTBSSSCCEEC-----------SSSCCEECTTTC
T ss_pred ccCcCCCCCceeEe-----------CCCCeEEeCCCC
Confidence 47999998666552 134469999993
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=76.22 E-value=3.7 Score=24.13 Aligned_cols=35 Identities=34% Similarity=0.789 Sum_probs=20.9
Q ss_pred CCCCCCCCcceeeeccccchhhhhccccceEeecccCCCccccccC
Q 032793 87 DMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLGKLNQID 132 (133)
Q Consensus 87 d~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglgkl~q~d 132 (133)
-.||+|.+.-++. +. +.-.++|..|.-.=.-+.||
T Consensus 6 ~~CP~C~~~~l~~--------d~---~~gelvC~~CG~v~~e~~id 40 (50)
T 1pft_A 6 KVCPACESAELIY--------DP---ERGEIVCAKCGYVIEENIID 40 (50)
T ss_dssp CSCTTTSCCCEEE--------ET---TTTEEEESSSCCBCCCCCCC
T ss_pred EeCcCCCCcceEE--------cC---CCCeEECcccCCcccccccc
Confidence 3699998743333 22 23468999995433345554
No 17
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=70.63 E-value=2.9 Score=33.40 Aligned_cols=26 Identities=38% Similarity=0.742 Sum_probs=17.2
Q ss_pred CCCCCCCCCc--ceeeeccccchhhhhccccceEeeccc
Q 032793 86 KDMCPECDGA--GFVRKSGATLRANAARKDEVQIVCARC 122 (133)
Q Consensus 86 kd~CPECdGa--GFvrk~g~~l~anaArkd~~qivc~~c 122 (133)
+-.||||.+. =+|... ..-.+||..|
T Consensus 21 ~~~Cp~C~~~~~~lv~D~-----------~~G~~vC~~C 48 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERF-----------SEGDVVCALC 48 (345)
T ss_dssp -CCCSSCCCSSCCEEEEG-----------GGTEEEETTT
T ss_pred CCcCCCCCCCCCceeEEC-----------CCCcEEeCCC
Confidence 4579999972 244321 3457999999
No 18
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=63.83 E-value=3.1 Score=30.25 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=28.8
Q ss_pred HHhcccceeeeecCCCCCCCCCcceeeeccc-cchhhhhccccceEeec
Q 032793 73 ALLGTGFPILFSRKDMCPECDGAGFVRKSGA-TLRANAARKDEVQIVCA 120 (133)
Q Consensus 73 alvGTAfpIlfsRkd~CPECdGaGFvrk~g~-~l~anaArkd~~qivc~ 120 (133)
+.-|+-..|-+.|+ |+.|+|.|++++.-. +++--+=-+|..+|.-+
T Consensus 16 ~~~G~~k~i~i~~~--c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~ 62 (181)
T 3agx_A 16 IYSGCTKKMKISHK--RLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 62 (181)
T ss_dssp HHHCEEEEEEEEEE--EECTTSSCEEEEEEEEEEEECTTCCTTCEEEET
T ss_pred hcCCcEEEEEEecc--cCCCCCceEEEEeEEEEEEECCCccCCcEEEEe
Confidence 44566666656654 999999999876432 44444445555555543
No 19
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=54.17 E-value=2.9 Score=27.15 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=27.7
Q ss_pred CCCCCCCCCcceeeeccccchhhhhccccceEeecc--cCCCcccccc
Q 032793 86 KDMCPECDGAGFVRKSGATLRANAARKDEVQIVCAR--CNGLGKLNQI 131 (133)
Q Consensus 86 kd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~--cnglgkl~q~ 131 (133)
...||.|...-....--..++.-...-++.++.|++ |+-.++++++
T Consensus 58 ~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~~~~~~~ 105 (116)
T 1rmd_A 58 GSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEKY 105 (116)
T ss_dssp CSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCEEEHHHH
T ss_pred cCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcchhhHhHH
Confidence 458999987632211111222223334678899997 9888877654
No 20
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=53.71 E-value=4.1 Score=36.66 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=17.4
Q ss_pred eeeeecC---CCCCCCCCcceeee
Q 032793 80 PILFSRK---DMCPECDGAGFVRK 100 (133)
Q Consensus 80 pIlfsRk---d~CPECdGaGFvrk 100 (133)
|=+||-+ +.||+|+|.|.+..
T Consensus 139 ~~~FSfN~p~G~C~~C~G~G~~~~ 162 (842)
T 2vf7_A 139 AEGFSPNTPEGACPECHGLGRVYT 162 (842)
T ss_dssp GGGGCTTSTTTBCTTTTSSSEEEE
T ss_pred hhhcccCCCCCCCccccCCccEEE
Confidence 4457776 89999999999977
No 21
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=51.62 E-value=10 Score=22.89 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=23.7
Q ss_pred cceeeeecCCCCCCCCCcceeeeccccchhhhhccccceEeecccCC
Q 032793 78 GFPILFSRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNG 124 (133)
Q Consensus 78 AfpIlfsRkd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cng 124 (133)
+++.+=.+.-.||+|...--+-... ..| -|....-+-.+|.+|.-
T Consensus 7 ~~~~~~~~~~~Cp~Cg~~~~~~~q~-Q~r-sadep~T~fy~C~~Cg~ 51 (57)
T 1qyp_A 7 DLKTLPTTKITCPKCGNDTAYWWEM-QTR-AGDEPSTIFYKCTKCGH 51 (57)
T ss_dssp CCSSSCEEECCCTTTCCSEEEEEEE-CCS-SSSCSSEEEEEESSSCC
T ss_pred hhhcCCceEeECCCCCCCEEEEEEe-ecc-cCCCCCcEEEEcCCCCC
Confidence 3444444567899998754332222 222 11122234578999864
No 22
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=51.40 E-value=4.7 Score=37.36 Aligned_cols=26 Identities=42% Similarity=0.829 Sum_probs=19.9
Q ss_pred hcccc----eeeeecC---CCCCCCCCcceeee
Q 032793 75 LGTGF----PILFSRK---DMCPECDGAGFVRK 100 (133)
Q Consensus 75 vGTAf----pIlfsRk---d~CPECdGaGFvrk 100 (133)
.|..| |-+||-+ +.||+|+|-|.+..
T Consensus 273 ~g~~~~~~~p~~FSfN~p~GaCp~C~G~G~~~~ 305 (972)
T 2r6f_A 273 CGFSIGELEPRLFSFNSPFGACPDCDGLGAKLE 305 (972)
T ss_dssp TCCEEECCCGGGGCSSSTTTBCTTTTSCCEEEE
T ss_pred CCCcCCCCChhhcCcCCCCCCCCCCcCccceEe
Confidence 46666 4567765 78999999999873
No 23
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=51.08 E-value=4.9 Score=37.28 Aligned_cols=21 Identities=38% Similarity=0.920 Sum_probs=17.3
Q ss_pred eeeeecC---CCCCCCCCcceeee
Q 032793 80 PILFSRK---DMCPECDGAGFVRK 100 (133)
Q Consensus 80 pIlfsRk---d~CPECdGaGFvrk 100 (133)
|=+||-+ +.||+|+|-|.+..
T Consensus 291 p~~FSfN~p~GaCp~C~G~G~~~~ 314 (993)
T 2ygr_A 291 PRSFSFNSPYGACPDCSGLGIRKE 314 (993)
T ss_dssp GGGGCTTSTTTBCTTTTTSCEEEE
T ss_pred hhhcCcCCCCCCCCCCcCccceee
Confidence 5677765 78999999999874
No 24
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=50.66 E-value=5 Score=36.44 Aligned_cols=27 Identities=48% Similarity=1.008 Sum_probs=19.5
Q ss_pred hcccce----eeeecC---CCCCCCCCcceeeec
Q 032793 75 LGTGFP----ILFSRK---DMCPECDGAGFVRKS 101 (133)
Q Consensus 75 vGTAfp----IlfsRk---d~CPECdGaGFvrk~ 101 (133)
-|..|| -+||-+ +.||+|+|-|.+..-
T Consensus 255 ~~~~~~~~~~~~fsfn~p~g~C~~C~G~G~~~~~ 288 (916)
T 3pih_A 255 CGIGFPEITPKLFSFNSPYGACPNCHGLGFTFEV 288 (916)
T ss_dssp TCCCCCCCSGGGGCTTSTTTBCTTTTTSSEEEEE
T ss_pred cCCccCCCCHhhcCCCCCCCcCCeeecccceEec
Confidence 355553 457655 899999999998644
No 25
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=49.34 E-value=6.5 Score=33.99 Aligned_cols=16 Identities=44% Similarity=1.120 Sum_probs=14.0
Q ss_pred CCCCCCCCcceeeecc
Q 032793 87 DMCPECDGAGFVRKSG 102 (133)
Q Consensus 87 d~CPECdGaGFvrk~g 102 (133)
..||.|.|-|+|+..-
T Consensus 409 ~~Cp~C~G~G~v~s~~ 424 (517)
T 2bx2_L 409 HVCPRCSGTGTVRDNE 424 (517)
T ss_dssp CCCSSSSSSSCCCCHH
T ss_pred CcCCCcCCceeECCHH
Confidence 6799999999998654
No 26
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=46.12 E-value=8.3 Score=29.26 Aligned_cols=24 Identities=29% Similarity=0.948 Sum_probs=15.9
Q ss_pred CCCCCCCCcceeeeccccchhhhhccccceEeecccC
Q 032793 87 DMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCN 123 (133)
Q Consensus 87 d~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cn 123 (133)
.-||+|..+ |+ -.|+.+.|||.|-
T Consensus 28 P~CP~C~se-yt------------YeDg~l~vCPeC~ 51 (138)
T 2akl_A 28 PPCPQCNSE-YT------------YEDGALLVCPECA 51 (138)
T ss_dssp CCCTTTCCC-CC------------EECSSSEEETTTT
T ss_pred CCCCCCCCc-ce------------EecCCeEECCccc
Confidence 679999765 22 2466677777774
No 27
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=42.98 E-value=13 Score=24.24 Aligned_cols=37 Identities=22% Similarity=0.498 Sum_probs=19.8
Q ss_pred CCCCCCCcceeeeccc---cchhhhhcccc-ceEeecccCC
Q 032793 88 MCPECDGAGFVRKSGA---TLRANAARKDE-VQIVCARCNG 124 (133)
Q Consensus 88 ~CPECdGaGFvrk~g~---~l~anaArkd~-~qivc~~cng 124 (133)
.||.|.+.-.+.+.-. +.+-...-=+. .-.+|.+|.-
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE 44 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEE 44 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCC
Confidence 6999988755544321 22222222233 4457888853
No 28
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=42.24 E-value=13 Score=33.38 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=24.1
Q ss_pred CCCCCCCCcceeeeccccchhhhhccccceEeecccCCCc
Q 032793 87 DMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLG 126 (133)
Q Consensus 87 d~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglg 126 (133)
..||.|.|.|++.-.- ..-......|+.|+|.-
T Consensus 639 g~c~~c~g~G~~~~~~-------~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 639 GRCEHCQGEGWVMVEL-------LFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp TBCTTTTTCSEEEETT-------CSSSCEEEECTTTTTCC
T ss_pred cccccccCCCccchhh-------hcCCccceecccccCcc
Confidence 5699999999986322 23345678899999853
No 29
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.71 E-value=14 Score=25.37 Aligned_cols=33 Identities=36% Similarity=0.642 Sum_probs=18.4
Q ss_pred ecCCCCCCCCCcceeeeccccchhhhhccccceEeecccCCCc
Q 032793 84 SRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLG 126 (133)
Q Consensus 84 sRkd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglg 126 (133)
.....||||.-.==+ |.|=-| +...|.+||+|=
T Consensus 29 ~~~afCPeCgq~Le~------lkACGA----~~yFC~~C~~Li 61 (81)
T 2jrp_A 29 SLQALCPDCRQPLQV------LKACGA----VDYFCQNGHGLI 61 (81)
T ss_dssp EEEEECSSSCSCCCE------EEETTE----EEECCTTTTCCC
T ss_pred CCcccCcchhhHHHH------HHhcCC----cCeeeccCCCEe
Confidence 344468888654332 222211 167888888874
No 30
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=39.45 E-value=20 Score=23.43 Aligned_cols=24 Identities=29% Similarity=0.779 Sum_probs=15.8
Q ss_pred CCCCCCCcceeeeccccchhhhhccccceEeecccC
Q 032793 88 MCPECDGAGFVRKSGATLRANAARKDEVQIVCARCN 123 (133)
Q Consensus 88 ~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cn 123 (133)
.||.|.|. |+.+. ++-..+|++|.
T Consensus 10 ~CP~ck~~---------L~~~~---~~~~LiC~~cg 33 (70)
T 2js4_A 10 VCPVCKGR---------LEFQR---AQAELVCNADR 33 (70)
T ss_dssp BCTTTCCB---------EEEET---TTTEEEETTTT
T ss_pred ECCCCCCc---------CEEeC---CCCEEEcCCCC
Confidence 69999984 22221 24567899984
No 31
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=39.08 E-value=12 Score=27.42 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=21.0
Q ss_pred eecCCCCCCCCCcceeeeccccchhhhhccccceEeecccCCCcc
Q 032793 83 FSRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLGK 127 (133)
Q Consensus 83 fsRkd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglgk 127 (133)
|-|+..||.|.|-. .++.. +|. ...|-+|.--++
T Consensus 11 ~~~~~~CP~Cg~~d-------~~~~~---~dg-~~~C~~Cg~~~~ 44 (255)
T 1nui_A 11 FLYHIPCDNCGSSD-------GNSLF---SDG-HTFCYVCEKWTA 44 (255)
T ss_dssp EEEEECCSSSCCSS-------CEEEE---TTS-CEEETTTCCEEC
T ss_pred eecCCcCCCCCCCC-------CceEe---CCC-CeecccCCCcCC
Confidence 56789999997731 13322 122 489999964433
No 32
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=37.55 E-value=4.2 Score=31.92 Aligned_cols=21 Identities=33% Similarity=0.732 Sum_probs=16.6
Q ss_pred hhhccccceEeecccCCCccccc
Q 032793 108 NAARKDEVQIVCARCNGLGKLNQ 130 (133)
Q Consensus 108 naArkd~~qivc~~cnglgkl~q 130 (133)
.+||+.|.--.|+||+ |.|..
T Consensus 102 dkAR~KQq~k~CpnC~--g~L~~ 122 (174)
T 1odh_A 102 DKARQKQQRKSCPNCN--GPLKL 122 (174)
T ss_dssp HHHHHHHHHSBCSSSC--CBEEE
T ss_pred HHHHHHhhcCCCCCCC--cceee
Confidence 5789999999999998 55543
No 33
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=37.41 E-value=24 Score=22.93 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=15.7
Q ss_pred CCCCCCCcceeeeccccchhhhhccccceEeecccC
Q 032793 88 MCPECDGAGFVRKSGATLRANAARKDEVQIVCARCN 123 (133)
Q Consensus 88 ~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cn 123 (133)
.||.|.|. |+.+. ++...+|++|.
T Consensus 10 ~CP~ck~~---------L~~~~---~~~~LiC~~cg 33 (68)
T 2jr6_A 10 VCPVTKGR---------LEYHQ---DKQELWSRQAK 33 (68)
T ss_dssp BCSSSCCB---------CEEET---TTTEEEETTTT
T ss_pred ECCCCCCc---------CeEeC---CCCEEEcCCCC
Confidence 69999973 22221 34567899984
No 34
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.83 E-value=15 Score=26.64 Aligned_cols=33 Identities=30% Similarity=0.613 Sum_probs=17.2
Q ss_pred eecCCCCCCCCCcceeeeccccchhhhhccccceEeecccCCC
Q 032793 83 FSRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGL 125 (133)
Q Consensus 83 fsRkd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cngl 125 (133)
|.+...||||.-+==+.|.=. -+...|.+||||
T Consensus 58 f~~~a~CPdC~q~LevLkACG----------AvdYFC~~chgL 90 (101)
T 2jne_A 58 IEMKALCPDCHQPLQVLKACG----------AVDYFCQHGHGL 90 (101)
T ss_dssp EEEEEECTTTCSBCEEEEETT----------EEEEEETTTTEE
T ss_pred hhccccCcchhhHHHHHHHhc----------CcchhhccCCce
Confidence 455566666654433332211 135667777776
No 35
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=36.41 E-value=25 Score=28.00 Aligned_cols=28 Identities=36% Similarity=0.630 Sum_probs=18.0
Q ss_pred CCCCCCCCCc-c-eeeeccccchhhhhccccceEeecccCC
Q 032793 86 KDMCPECDGA-G-FVRKSGATLRANAARKDEVQIVCARCNG 124 (133)
Q Consensus 86 kd~CPECdGa-G-Fvrk~g~~l~anaArkd~~qivc~~cng 124 (133)
+-.||||.+. . +|.. ...-.+||.+|--
T Consensus 21 ~~~CPECGs~~t~IV~D-----------~erGE~VCsdCGL 50 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVER-----------FSEGDVVCALCGL 50 (197)
T ss_dssp CCCCTTTCCSSCCEEEE-----------GGGTEEEETTTCB
T ss_pred CeECcCCCCcCCeEEEe-----------CCCCEEEEcCCCC
Confidence 3479999983 2 4432 1235789999953
No 36
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=35.24 E-value=26 Score=22.75 Aligned_cols=24 Identities=25% Similarity=0.721 Sum_probs=15.7
Q ss_pred CCCCCCCcceeeeccccchhhhhccccceEeecccC
Q 032793 88 MCPECDGAGFVRKSGATLRANAARKDEVQIVCARCN 123 (133)
Q Consensus 88 ~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cn 123 (133)
.||.|.|. |+.+. ++...+|++|.
T Consensus 10 ~CP~ck~~---------L~~~~---~~~~LiC~~cg 33 (68)
T 2hf1_A 10 VCPLCKGP---------LVFDK---SKDELICKGDR 33 (68)
T ss_dssp BCTTTCCB---------CEEET---TTTEEEETTTT
T ss_pred ECCCCCCc---------CeEeC---CCCEEEcCCCC
Confidence 69999973 32221 24567899984
No 37
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=34.25 E-value=24 Score=22.94 Aligned_cols=25 Identities=24% Similarity=0.663 Sum_probs=16.3
Q ss_pred CCCCCCCCcceeeeccccchhhhhccccceEeecccC
Q 032793 87 DMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCN 123 (133)
Q Consensus 87 d~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cn 123 (133)
-.||.|.|. |+.+ +++...+|++|.
T Consensus 9 L~CP~ck~~---------L~~~---~~~~~LiC~~cg 33 (69)
T 2pk7_A 9 LACPICKGP---------LKLS---ADKTELISKGAG 33 (69)
T ss_dssp CCCTTTCCC---------CEEC---TTSSEEEETTTT
T ss_pred eeCCCCCCc---------CeEe---CCCCEEEcCCCC
Confidence 369999974 3222 134668899984
No 38
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=34.06 E-value=16 Score=23.87 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=25.9
Q ss_pred CCCCCCCcceeeeccccchhhhhccccceEeec--ccCCCccccccC
Q 032793 88 MCPECDGAGFVRKSGATLRANAARKDEVQIVCA--RCNGLGKLNQID 132 (133)
Q Consensus 88 ~CPECdGaGFvrk~g~~l~anaArkd~~qivc~--~cnglgkl~q~d 132 (133)
.||.|...=.. ..-..-++-...-++.++.|+ .|+-.|++.+++
T Consensus 55 ~CP~Cr~~~~~-~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~l~ 100 (118)
T 3hct_A 55 KCPVDNEILLE-NQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLE 100 (118)
T ss_dssp BCTTTCCBCCG-GGCEECHHHHHHHHTSEEECSSTTCCCEEEGGGSG
T ss_pred CCCCCCCCcCH-HhcccCHHHHHHHccceeECCCCCCCCEEeeHHHH
Confidence 89999764221 111111111122356889996 799888888765
No 39
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.92 E-value=32 Score=21.02 Aligned_cols=25 Identities=28% Similarity=0.895 Sum_probs=16.2
Q ss_pred CCCCCCCCcceeeeccccchhhhhccccceEeecccC
Q 032793 87 DMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCN 123 (133)
Q Consensus 87 d~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cn 123 (133)
-.||+|...-|..... -..+|+.|.
T Consensus 20 k~CP~CG~~~fm~~~~------------~R~~C~kCG 44 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHG------------DRWACGKCG 44 (50)
T ss_dssp EECSSSCSSCEEEECS------------SEEECSSSC
T ss_pred ccCCCCCCceEEecCC------------CeEECCCCC
Confidence 4699996555655331 346899884
No 40
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.63 E-value=30 Score=22.48 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=15.8
Q ss_pred CCCCCCCcceeeeccccchhhhhccccceEeecccC
Q 032793 88 MCPECDGAGFVRKSGATLRANAARKDEVQIVCARCN 123 (133)
Q Consensus 88 ~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cn 123 (133)
.||.|.|. |+.+ +++-..+|++|.
T Consensus 12 ~CP~ck~~---------L~~~---~~~g~LvC~~c~ 35 (67)
T 2jny_A 12 ACPKDKGP---------LRYL---ESEQLLVNERLN 35 (67)
T ss_dssp BCTTTCCB---------CEEE---TTTTEEEETTTT
T ss_pred CCCCCCCc---------CeEe---CCCCEEEcCCCC
Confidence 69999983 2222 134567899984
No 41
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=31.80 E-value=24 Score=22.21 Aligned_cols=36 Identities=22% Similarity=0.506 Sum_probs=19.5
Q ss_pred CCCCCCCcceeeeccc-cc--hhhhhc-cccceEeecccC
Q 032793 88 MCPECDGAGFVRKSGA-TL--RANAAR-KDEVQIVCARCN 123 (133)
Q Consensus 88 ~CPECdGaGFvrk~g~-~l--~anaAr-kd~~qivc~~cn 123 (133)
.||.|.+...+++... ++ .-..-- ++-.-.+|++|.
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CG 43 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCE 43 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCC
Confidence 6999988767665432 22 111111 222456788884
No 42
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=30.68 E-value=29 Score=21.59 Aligned_cols=26 Identities=27% Similarity=0.818 Sum_probs=17.9
Q ss_pred CCCCCCCCCcceeeeccccchhhhhccccceEeecccC
Q 032793 86 KDMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCN 123 (133)
Q Consensus 86 kd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cn 123 (133)
.-.||+|..--|+.+.. -...|.+|.
T Consensus 18 ~~fCPkCG~~~~ma~~~------------dr~~C~kCg 43 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHA------------DRYSCGRCG 43 (55)
T ss_dssp SCCCTTTTTTCCCEECS------------SEEECTTTC
T ss_pred cccCcCCCCceeEeccC------------CEEECCCCC
Confidence 46799997766655321 278999993
No 43
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=29.41 E-value=5.2 Score=35.73 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=31.4
Q ss_pred HhcccceeeeecCCCCCCCCCcceeeeccccchhhhhccccceEeecccCCCccc
Q 032793 74 LLGTGFPILFSRKDMCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNGLGKL 128 (133)
Q Consensus 74 lvGTAfpIlfsRkd~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cnglgkl 128 (133)
..|..-.|=+.|...|+.|.|.|- +.|. |. .-...|+.|+|-.+.
T Consensus 179 ~~G~~k~i~v~~~~~C~tCHGsGA--~~Gt-------~~-~~~~tC~tCHGs~~~ 223 (669)
T 3pmq_A 179 GNMLAYTRNLVSIDTCNSCHSNLA--FHGG-------RY-NQVETCVTCHNSKKV 223 (669)
T ss_dssp SSSCCCCCCCCCSHHHHHHHSSCC--TTTT-------TS-CSSSCSTTTSSTTTC
T ss_pred hCCCceEEEeccCCcCCCCCCCCC--cCCc-------cC-cCCccCCCCCCCccc
Confidence 457888888999999999999873 2221 11 123479999998433
No 44
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=28.81 E-value=22 Score=27.84 Aligned_cols=28 Identities=36% Similarity=0.630 Sum_probs=18.1
Q ss_pred CCCCCCCCCcc--eeeeccccchhhhhccccceEeecccCC
Q 032793 86 KDMCPECDGAG--FVRKSGATLRANAARKDEVQIVCARCNG 124 (133)
Q Consensus 86 kd~CPECdGaG--Fvrk~g~~l~anaArkd~~qivc~~cng 124 (133)
...||+|.+.. +|.. -.+-.+||.+|--
T Consensus 21 ~~~Cp~Cg~~~~~iv~D-----------~~~G~~vC~~CG~ 50 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVER-----------FSEGDVVCALCGL 50 (345)
T ss_dssp CCCCSTTCCSCCCCCCC-----------SSSCSCCCSSSCC
T ss_pred CCcCcCCCCCCCceEEE-----------CCCCCEecCCCCe
Confidence 35799998752 3331 2345789999953
No 45
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=27.77 E-value=28 Score=24.55 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=13.6
Q ss_pred CCCCCCCCcceeeeccccch
Q 032793 87 DMCPECDGAGFVRKSGATLR 106 (133)
Q Consensus 87 d~CPECdGaGFvrk~g~~l~ 106 (133)
..||.|.+..+--.+|..|+
T Consensus 108 ~~CP~Cgs~~~~i~~G~el~ 127 (139)
T 3a43_A 108 LACPKCGSHDFEVVKGRGVY 127 (139)
T ss_dssp CSCSSSSCCCEEEEESSCEE
T ss_pred CcCccccCCccEEecCCeEE
Confidence 45888888876656665554
No 46
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.18 E-value=30 Score=23.30 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=20.8
Q ss_pred cCcceEEeeecccccCCceeeehhHHHHHHhcc-cce
Q 032793 45 KRSLTVVAAAGDVSADGTTYLIAGAAAVALLGT-GFP 80 (133)
Q Consensus 45 ~rs~~VV~Avgdvs~~gt~yliagAiAvalvGT-Afp 80 (133)
+|-.+|.-.+|++|.--..+|- -+..+.--|| .|-
T Consensus 26 ~~V~~V~l~IG~ls~v~~e~l~-f~f~~~~~gt~~~e 61 (119)
T 2kdx_A 26 HKIERVVVGIGERSAMDKSLFV-SAFETFREESLVCK 61 (119)
T ss_dssp CCCCEEEEEEETTSCCCHHHHH-HHHHHHGGGCTTTS
T ss_pred CeEEEEEEEeehhccccHHHHH-HHHHHHHhCChhhc
Confidence 4556788888988854444433 2334445677 543
No 47
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=24.92 E-value=33 Score=27.79 Aligned_cols=18 Identities=28% Similarity=0.896 Sum_probs=13.3
Q ss_pred eeeecCCCCCCCCCccee
Q 032793 81 ILFSRKDMCPECDGAGFV 98 (133)
Q Consensus 81 IlfsRkd~CPECdGaGFv 98 (133)
+.|-|..-||+|+|-||.
T Consensus 332 ~~~~~~~gC~~C~~~Gy~ 349 (418)
T 1p9r_A 332 LILYRATGCPKCNHKGYR 349 (418)
T ss_dssp CEEEECCCCSSSCSSSEE
T ss_pred ceeecCCCCccccCCCCC
Confidence 345566789999988875
No 48
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=24.74 E-value=25 Score=19.87 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=18.0
Q ss_pred CCCCCCCcceeeeccccchhhhhccccceEeecccCC
Q 032793 88 MCPECDGAGFVRKSGATLRANAARKDEVQIVCARCNG 124 (133)
Q Consensus 88 ~CPECdGaGFvrk~g~~l~anaArkd~~qivc~~cng 124 (133)
.|++|+ ..|..+. .|. ..-..+-...|..|.-
T Consensus 16 ~C~~C~-k~F~~~~--~l~--~~H~~~k~~~C~~C~k 47 (62)
T 1vd4_A 16 KCPVCS-STFTDLE--ANQ--LFDPMTGTFRCTFCHT 47 (62)
T ss_dssp ECSSSC-CEEEHHH--HHH--HEETTTTEEBCSSSCC
T ss_pred cCCCCC-chhccHH--HhH--hhcCCCCCEECCCCCC
Confidence 588884 5666543 333 2222344578888863
No 49
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=22.64 E-value=34 Score=19.81 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=10.3
Q ss_pred CCCcceeeeccc
Q 032793 92 CDGAGFVRKSGA 103 (133)
Q Consensus 92 CdGaGFvrk~g~ 103 (133)
=||-+||||.|.
T Consensus 8 ~Dg~~Yvr~dg~ 19 (27)
T 2ww6_A 8 RDAQAYVRKFGE 19 (27)
T ss_dssp SSSCEEEEETTE
T ss_pred cCcceeEEEcCe
Confidence 489999999886
No 50
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.31 E-value=28 Score=24.17 Aligned_cols=8 Identities=38% Similarity=0.945 Sum_probs=5.1
Q ss_pred EeecccCC
Q 032793 117 IVCARCNG 124 (133)
Q Consensus 117 ivc~~cng 124 (133)
..||.|.+
T Consensus 149 ~~Cp~CG~ 156 (165)
T 2lcq_A 149 GVCPDCGS 156 (165)
T ss_dssp GBCTTTCC
T ss_pred CcCCCCCC
Confidence 36777765
No 51
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=21.88 E-value=20 Score=26.88 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=11.4
Q ss_pred eeeecCCCCCCCCC
Q 032793 81 ILFSRKDMCPECDG 94 (133)
Q Consensus 81 IlfsRkd~CPECdG 94 (133)
++|.+-..||+|.|
T Consensus 73 m~FGal~~CP~C~G 86 (160)
T 2riq_A 73 MVFGALLPCEECSG 86 (160)
T ss_dssp HHHCEECCCTTTCC
T ss_pred HHhCCCCCCCCCCC
Confidence 46777889999994
No 52
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=21.01 E-value=20 Score=22.49 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=21.1
Q ss_pred CCCCCCCc--ceeeeccccchhhh-hccccceEeecccCC
Q 032793 88 MCPECDGA--GFVRKSGATLRANA-ARKDEVQIVCARCNG 124 (133)
Q Consensus 88 ~CPECdGa--GFvrk~g~~l~ana-Arkd~~qivc~~cng 124 (133)
.|..|+.. =+|.-+..++|.=. -=-++.+||||.|..
T Consensus 10 ~C~~C~~~lrl~V~at~~~IR~lqqLLl~~L~lvCp~Ca~ 49 (52)
T 2b9d_A 10 SCAYCEKLVRLTVLADHSAIRQLEEMLLRSLNIVCPLCTL 49 (52)
T ss_dssp ECTTTCCEEEEEEEECHHHHHHHHHHHHHTCCCCCTTTTT
T ss_pred ECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcchhc
Confidence 46666652 23444444554321 223678999999974
Done!