BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032794
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 79/112 (70%), Gaps = 4/112 (3%)
Query: 18 NRLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
RLQKEL+ Q +PP G + V +++ +WI+++ GAPGTLY E F+L F YP
Sbjct: 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 75 MEAPQVIFLPP-APLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 125
++PQV+F P+HPH+YSNGHICL IL + WSPA++V SVC+SI+SMLS
Sbjct: 85 FDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A+ R+QKEL + NPP V N++ WI++ G T+YANE +++++ FP++YP
Sbjct: 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVK 130
++ P V FL P H H+YSNG ICL +L D ++P++++S + +SI+SMLSS+ K
Sbjct: 81 LKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKEK 136
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A+ R+QKEL + NPP V +N++ WI++ G T+YANE ++L++ FP+ YP
Sbjct: 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVK 130
++ P V FL P H H+YSNG ICL +L D ++P++++S + +SI+SMLSS+ K
Sbjct: 67 LKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK 122
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
+ +A R+QKEL E Q +PP V D++ W + G + Y F L V FP
Sbjct: 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPV 61
Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
YP +AP+V F+ HP+I NG ICLDIL D WSPA+T+S V +SI S+L+
Sbjct: 62 DYPFKAPRVTFMTKV-YHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTD 115
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+QKEL + Q +PPA V D+L W + G P + Y F L V FP Y
Sbjct: 19 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 78
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P++ F HP+I SNG ICLDIL WSPA+TVS V +SI S+L
Sbjct: 79 PFKPPKIAFTTKI-YHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLL 128
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 14 KIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEH 72
++A R+QKEL + Q +PPA V D+L W + G P + Y F L V FP
Sbjct: 6 EMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD 65
Query: 73 YPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
YP + P++ F HP+I SNG ICLDIL WSPA+TVS V +SI S+L
Sbjct: 66 YPFKPPKIAFTTKI-YHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLL 116
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+QKEL + Q +PPA V D+L W + G P + Y F L V FP Y
Sbjct: 3 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P++ F HP+I SNG ICLDIL WSPA+TVS V +SI S+L
Sbjct: 63 PFKPPKIAFTTKI-YHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLL 112
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
A+ +A R+QKEL + Q +PPA V D+L W + G + Y F L + F
Sbjct: 2 AMGSMALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHF 61
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P YP + P+V F HP+I SNG ICLDIL WSPA+TVS V +SI S+L
Sbjct: 62 PTDYPFKPPKVAFTTKI-YHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLL 115
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+QKEL + Q +PPA + V D+L W + G P + Y F L V FP Y
Sbjct: 7 MALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P++ F HP+I SNG I LDIL WSPA+TVS V +SI S+L
Sbjct: 67 PFKPPKIAFTTKI-YHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLL 116
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
+S R+ KEL + + +PP V D+L W + G + YA F L + FP YP
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYP 62
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSS 127
+ P++ F HP+I +NG+ICLDIL D WSPA+T+S V +SI S+L+ +
Sbjct: 63 FKPPKISFTTKI-YHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDA 114
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
S +A R+QKEL + +PPA V D+L W + G P + Y F L + FP
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPT 61
Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
YP + P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 62 DYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 113
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFP 70
+S A RL ++ Q +PP G ++N + +W + G GT + + TF+L ++F
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 71 EHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 125
E YP + P V FL HP++Y++G ICLDIL + WSP VSS+ SI S+L
Sbjct: 61 EEYPNKPPTVRFLSKM-FHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLD 114
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 16 ASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
++ R+QKEL E ++PP AG K DN+ W + G PG++Y F L + F
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFSP 60
Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
YP + P+V F H +I S G ICLDIL D+WSPA+T+S V +SI S+L+
Sbjct: 61 DYPFKPPKVTFRTRI-YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTD 114
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 8/114 (7%)
Query: 16 ASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
++ R+QKEL + ++PP AG K DN+ W + G PG++Y F L + F
Sbjct: 49 SAKRIQKELADITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFTP 105
Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 125
YP + P+V F H +I S G ICLDIL D+WSPA+T+S V +SI S+L+
Sbjct: 106 EYPFKPPKVTFRTRI-YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLT 158
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 19 RLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
R+ KE PP G V +N + + I +NG GT Y T++L++ PE YPME
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 78 PQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
P+V FL HP+I G ICLDIL D WSPA+ + +V +SI ++LSS
Sbjct: 65 PKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSS 112
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 19 RLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
R+ KE PP G V +N + + I +NG GT Y T++L++ PE YPME
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 78 PQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
P+V FL HP+I G ICLDIL D WSPA+ + +V +SI ++LSS
Sbjct: 65 PKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSS 112
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ +EL + +PP+ V D+L W + G + YA F L + FP Y
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
P + P+V F HP+I SNG ICLDIL D WSPA+T+S V +SI S+L+
Sbjct: 61 PFKPPKVNFTTRI-YHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTD 112
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Query: 4 SSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANET 62
+ PS A RLQ+EL+ ++ G +DNL +W+ ++GA GT+Y +
Sbjct: 19 GAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLR 78
Query: 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILS 122
++L ++FP YP AP V FL P HP++ + G+I LDIL + WS V ++ +SI S
Sbjct: 79 YKLSLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNISLDILKEKWSALYDVRTILLSIQS 137
Query: 123 MLSSSTV 129
+L +
Sbjct: 138 LLGEPNI 144
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 16/134 (11%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF--KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
+SK A RL KEL + + P G K +N+ W + G P T YA+ F +++F
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSV 116
P+ YP+ P++ F P+ LHP+IY NG +C+ IL+ + WSP +V +
Sbjct: 61 PKDYPLSPPKLTFT-PSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKI 119
Query: 117 CISILSMLSSSTVK 130
+S++SMLS ++
Sbjct: 120 LLSVMSMLSEPNIE 133
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
A+ +A R+ KEL + +PPA V D++ W + G + Y F L + F
Sbjct: 2 AMGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 61
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P YP + P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 62 PTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 115
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 5 SAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETF 63
+ PSR+ RL ++ + Q +PPAG T DN+ W + G T + + TF
Sbjct: 2 TTPSRR--------RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTF 53
Query: 64 ELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSM 123
+L ++F E YP + P V F+ HP++Y++G ICLDIL + WSP V+++ SI S+
Sbjct: 54 KLSLEFTEEYPNKPPTVKFISKM-FHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSL 112
Query: 124 LSS 126
L
Sbjct: 113 LDE 115
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
++ +A R+ KEL + +PPA V D++ W + G + Y F L + FP
Sbjct: 8 MNSMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 71 EHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
YP + P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 68 TDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 120
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 10/122 (8%)
Query: 5 SAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETF 63
+ PSR+ RL ++ + Q +PPAG T DN+ W + G T + + TF
Sbjct: 5 TTPSRR--------RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTF 56
Query: 64 ELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSM 123
+L ++F E YP + P V F+ HP++Y++G ICLDIL + WSP V+++ SI S+
Sbjct: 57 KLSLEFTEEYPNKPPTVKFISKM-FHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSL 115
Query: 124 LS 125
L
Sbjct: 116 LD 117
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
++ +A R+ KEL + +PPA V D++ W + G + Y F L + FP
Sbjct: 8 MNSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 71 EHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
YP + P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 68 TDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 120
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 9 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 68
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 69 PFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 118
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 112
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 79 PFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 128
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A R+ KEL + +PPA V D++ W + G + Y F L + FP YP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
+ P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 64 FKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 112
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 112
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A R+ KEL + +PPA V D++ W + G + Y F L + FP YP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
+ P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 61 FKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 109
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 61 PFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A R+ KEL + +PP V D++ W + G + Y+ F L + FP YP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
+ P+V F HP+I S G ICLDIL D WSPA+T+S V +SI S+L+
Sbjct: 82 FKPPKVNFTTKI-YHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTD 132
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHKVTD------NLQRWIIEVNGAPGTLYANETFELQ 66
S + RLQ+E +W+ + P GF K +L W + + G P T + ++L
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 67 VDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDIL--YDSWSPAMTVSSVCISILSML 124
+ FPE YP P+ F PP HP++Y +G +CL IL + W PA+T+ + + I +L
Sbjct: 68 MAFPEEYPTRPPKCRFTPPL-FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 126
Query: 125 SSSTV 129
+
Sbjct: 127 DDPNI 131
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFP 70
+S A RL ++ Q +PPAG DN + W + G T + TF+L + F
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 71 EHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
E YP + P V F+ HP+IY++G ICLDIL + WSP V+++ SI S+L
Sbjct: 61 EDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 113
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG ICLDIL WSPA+T+S V +SI S+L
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 112
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
+S A RL ++ + + P G + DN+ W + G T Y + TF L ++F
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 71 EHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
E YP + P V FL HP++Y+NG ICLDIL + W+P V+S+ SI S+ +
Sbjct: 61 EEYPNKPPHVKFLSEM-FHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFND 115
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG ICLDIL W PA+T+S V +SI S+L
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWGPALTISKVLLSICSLL 112
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG ICLD L WSPA+T+S V +SI S+L
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSICLDALRSQWSPALTISKVLLSICSLL 112
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 9/124 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S + RLQ+E +W+ + P GF K + +LQ+W + G GT +A +
Sbjct: 2 SMSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 61
Query: 65 LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILS 122
+ V++P YP + P+V F P HP++Y +G ICL IL + W PA+T+ + + +
Sbjct: 62 ITVEYPNEYPSKPPKVKF-PAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQD 120
Query: 123 MLSS 126
+L S
Sbjct: 121 LLDS 124
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S + RLQ+E +W+ + P GF K + +LQ+W + G GT +A + +
Sbjct: 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSM 123
V++P YP + P+V F P HP++Y +G ICL IL + W PA+T+ + + + +
Sbjct: 61 TVEYPNEYPSKPPKVKF-PAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDL 119
Query: 124 LSS 126
L S
Sbjct: 120 LDS 122
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 41 DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
DNL+ + + + G + Y + FEL++ P+ YPMEAP+V FL HP+I G ICL
Sbjct: 32 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLGRICL 90
Query: 101 DILYDSWSPAMTVSSVCISILSMLSS 126
D+L +WSPA+ + +V +SI ++L+S
Sbjct: 91 DVLKTNWSPALQIRTVLLSIQALLAS 116
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 41 DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
DNL+ + + + G + Y + FEL++ P+ YPMEAP+V FL HP+I G ICL
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLGRICL 88
Query: 101 DILYDSWSPAMTVSSVCISILSMLSS 126
D+L +WSPA+ + +V +SI ++L+S
Sbjct: 89 DVLKTNWSPALQIRTVLLSIQALLAS 114
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG I LDIL WSPA+T+S V +SI S+L
Sbjct: 61 PFKPPKVAFTTRI-YHPNINSNGSISLDILRSQWSPALTISKVLLSICSLL 110
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA + V D++ W + G + Y F L + FP Y
Sbjct: 1 MALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP I SNG I LDIL WSPA+T+S V +SI S+L
Sbjct: 61 PFKPPKVAFTTRI-YHPAINSNGSISLDILRSQWSPALTISKVLLSICSLL 110
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 4 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 63
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG I LDIL WSPA+T+S V +SI S+L
Sbjct: 64 PFKPPKVAFTTRI-YHPNINSNGSISLDILRSQWSPALTISKVLLSICSLL 113
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
AS R+ KEL + +PPA V D++ W + G + Y F L + FP YP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 75 MEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
+ P+V F HP+I SNG I LDIL WSPA+ +S V +SI S+L
Sbjct: 61 FKPPKVAFTTRI-YHPNINSNGSISLDILRSQWSPALKISKVLLSICSLL 109
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG I LDIL WSPA+T+S V +SI S+L
Sbjct: 79 PFKPPKVAFTTRI-YHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLL 128
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
P + P+V F HP+I SNG I LDIL WSPA+T+S V +SI S+L
Sbjct: 63 PFKPPKVAFTTRI-YHPNINSNGSISLDILRSQWSPALTISKVLLSICSLL 112
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 16/122 (13%)
Query: 20 LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
L+++L E NP GF + D+ L RW + + G P TLY F+ + FP+ YP+
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 78 PQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSML 124
P++ F+ HP++ NG +C+ IL+ + W P TV ++ IS++SML
Sbjct: 82 PKMKFITEI-WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML 140
Query: 125 SS 126
+
Sbjct: 141 AD 142
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 18 NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 77 APQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
AP+V F+ HP++ G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct: 68 APKVRFMTKI-YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 116
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 18 NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 77 APQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
AP+V F+ HP++ G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct: 71 APKVRFMTKI-YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 119
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S IA +RL +E W+ + P GF T NL W + G GT + F+
Sbjct: 5 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 64
Query: 65 LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILS 122
L++ F + YP P+ F PP HP++Y +G +CL IL + W PA+T+ + + I
Sbjct: 65 LRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQE 123
Query: 123 MLSSSTVK 130
+L+ ++
Sbjct: 124 LLNEPNIQ 131
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 18 NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 77 APQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
AP+V F+ HP++ G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct: 66 APKVRFMTKI-YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 18 NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 77 APQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
AP+V F+ HP++ G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct: 64 APKVRFMTKI-YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 112
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S IA +RL +E W+ + P GF T NL W + G GT + F+
Sbjct: 1 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 60
Query: 65 LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILS 122
L++ F + YP P+ F PP HP++Y +G +CL IL + W PA+T+ + + I
Sbjct: 61 LRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQE 119
Query: 123 MLSSSTVK 130
+L+ ++
Sbjct: 120 LLNEPNIQ 127
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S IA +RL +E W+ + P GF T NL W + G GT + F+
Sbjct: 2 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 65 LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILS 122
L++ F + YP P+ F PP HP++Y +G +CL IL + W PA+T+ + + I
Sbjct: 62 LRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQE 120
Query: 123 MLSSSTVK 130
+L+ ++
Sbjct: 121 LLNEPNIQ 128
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 18 NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 77 APQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126
AP+V F+ HP++ G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct: 69 APKVRFMTKI-YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 117
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSM 123
++ F + YP P+ F PP HP++Y +G +CL IL + W PA+T+ + + I +
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 124 LSSSTVKV 131
L+ ++
Sbjct: 123 LNEPNIQA 130
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSM 123
++ F + YP P+ F PP HP++Y +G +CL IL + W PA+T+ + + I +
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 119
Query: 124 LSSSTVK 130
L+ ++
Sbjct: 120 LNEPNIQ 126
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSM 123
++ F + YP P+ F PP HP++Y +G +CL IL + W PA+T+ + + I +
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 124 LSSSTVK 130
L+ ++
Sbjct: 123 LNEPNIQ 129
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 41 DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
DNL+ + + + G + Y + FEL++ P+ YPMEAP+V FL HP+I G I L
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLGRISL 88
Query: 101 DILYDSWSPAMTVSSVCISILSMLSS 126
D+L +WSPA+ + +V +SI ++L+S
Sbjct: 89 DVLKTNWSPALQIRTVLLSIQALLAS 114
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSM 123
++ F + YP P+ F PP HP++Y +G +CL IL + W PA+T+ + + I +
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 121
Query: 124 LSSSTVK 130
L+ ++
Sbjct: 122 LNEPNIQ 128
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSM 123
++ F + YP P+ F PP HP +Y +G +CL IL + W PA+T+ + + I +
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPL-FHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 124 LSSSTVK 130
L+ ++
Sbjct: 123 LNEPNIQ 129
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSM 123
++ F + YP P+ F PP HP++Y +G +CL IL + W PA+T+ + + I +
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 124 LSSSTVK 130
L+ ++
Sbjct: 123 LNEPNIQ 129
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 17 SNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
S RLQ+EL ++ G DNL +W+ ++G T+Y + ++L ++FP YP
Sbjct: 11 SKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 76 EAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 125
+ P V F P HP++ +G+ICLDIL ++W+ + V ++ +S+ S+L
Sbjct: 71 KPPVVKFTTPC-WHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLG 119
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 41 DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
DNL+ + + + G + Y + FEL++ P+ YPMEAP+V FL HP I G I L
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPAIDRLGRISL 88
Query: 101 DILYDSWSPAMTVSSVCISILSMLSS 126
D+L +WSPA+ + +V +SI ++L+S
Sbjct: 89 DVLKTNWSPALQIRTVLLSIQALLAS 114
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 17 SNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
++RL++EL PP G + D + ++ G T Y F+L+V PE YP
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 76 EAPQVIFLPPAPLHPHIYSNGHICLDIL----YDSWSPAMTVSSVCISILSMLSS 126
E PQ+ FL P HP+I S G ICLD+L +W P++ +++V SI ++S
Sbjct: 66 EPPQIRFLTPI-YHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSE 119
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSM 123
++ F + YP P+ F PP HP++ +G +CL IL + W PA+T+ + + I +
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPL-FHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 124 LSSSTVK 130
L+ ++
Sbjct: 123 LNEPNIQ 129
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 16/122 (13%)
Query: 20 LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
L+K+L + + P GF + D+ + +W + V G P TLY F+ +DFP YP +
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 78 PQVIFLPPAPLHPHIYSNGHICLDILYD-------------SWSPAMTVSSVCISILSML 124
P++ F+ HP+I G++C+ IL+D W P TV ++ +S++SML
Sbjct: 68 PKMKFISEI-WHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISML 126
Query: 125 SS 126
+
Sbjct: 127 TD 128
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSM 123
++ F + YP P+ F PP HP++Y +G + L IL + W PA+T+ + + I +
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQEL 119
Query: 124 LSSSTVK 130
L+ ++
Sbjct: 120 LNEPNIQ 126
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSM 123
++ F + YP P+ F PP HP++Y +G + L IL + W PA+T+ + + I +
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQEL 119
Query: 124 LSSSTVK 130
L+ ++
Sbjct: 120 LNEPNIQ 126
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 19 RLQKELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
RLQKEL + + + D N W+ + G GT Y F L + P YP
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 78 PQVIFLPPAPLHPHIYSN-GHICLDILYDSWSPAMTVSSVCISILSMLSS 126
P++ F+ HP+I S G ICLD+L + WSPA+T+ + +SI ++LS
Sbjct: 87 PKIKFVTKI-WHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSD 135
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHK-----VTDNLQRWIIEVNGAPG 55
MT R +++ IA R+++E E + K++ V +N E+ G P
Sbjct: 7 MTGGQQMGRGSMANIAVQRIKREFKE-VLKSEETSKNQIKVDLVDENFTELRGEIAGPPD 65
Query: 56 TLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLDILYDSWSPAMTVS 114
T Y ++L++ PE YP P+V F+ HP+I S G ICLDIL D W+ AMT+
Sbjct: 66 TPYEGGRYQLEIKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDILKDQWAAAMTLR 124
Query: 115 SV 116
+V
Sbjct: 125 TV 126
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGFKHK-----VTDNLQRWIIEVNGAPGTLYANETFEL 65
A++ IA R+++E E + K++ V +N E+ G P T Y ++L
Sbjct: 4 AMANIAVQRIKREFKE-VLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 62
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLDILYDSWSPAMTVSSV 116
++ PE YP P+V F+ HP+I S G ICLDIL D W+ AMT+ +V
Sbjct: 63 EIKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDILKDQWAAAMTLRTV 113
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 23 ELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
EL Q P GF+ + D +L W + + G P T Y F+ ++ FP YP P
Sbjct: 15 ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAF 74
Query: 81 IFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLSS 126
FL HP+IY G +C+ IL+ + W+P V ++ +S++S+L+
Sbjct: 75 RFLTKM-WHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE 132
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 23 ELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
EL Q P GF+ + D +L W + + G P T Y F+ ++ FP YP P
Sbjct: 12 ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAF 71
Query: 81 IFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLSS 126
FL HP+IY G +C+ IL+ + W+P V ++ +S++S+L+
Sbjct: 72 RFLTKM-WHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE 129
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGFKHK-----VTDNLQRWIIEVNGAPGTLYANETFEL 65
+++ IA R+++E E + K++ V +N E+ G P T Y ++L
Sbjct: 2 SMANIAVQRIKREFKE-VLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 60
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLDILYDSWSPAMTVSSV 116
++ PE YP P+V F+ HP+I S G ICLDIL D W+ AMT+ +V
Sbjct: 61 EIKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDILKDQWAAAMTLRTV 111
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGFKHK-----VTDNLQRWIIEVNGAPGTLYANETFEL 65
++ IA R+++E E + K++ V +N E+ G P T Y ++L
Sbjct: 1 GMANIAVQRIKREFKE-VLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 59
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLDILYDSWSPAMTVSSV 116
++ PE YP P+V F+ HP+I S G ICLDIL D W+ AMT+ +V
Sbjct: 60 EIKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDILKDQWAAAMTLRTV 110
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 39 VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGH 97
V +N E+ G P T Y ++L++ PE YP P+V F+ HP+I S G
Sbjct: 85 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI-WHPNISSVTGA 143
Query: 98 ICLDILYDSWSPAMTVSSV 116
ICLDIL D W+ AMT+ +V
Sbjct: 144 ICLDILKDQWAAAMTLRTV 162
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 39 VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN-GH 97
V ++ RW + G GT Y F L + P YP P++ F+ HP+I S G
Sbjct: 70 VGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKI-WHPNISSQTGA 128
Query: 98 ICLDILYDSWSPAMTVSSVCISILSMLSS 126
ICLDIL WSPA+T+ + +SI +ML+
Sbjct: 129 ICLDILKHEWSPALTIRTALLSIQAMLAD 157
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 52 GAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLDILYDSWSPA 110
G PGT Y F + ++ P YP + P++ F HP+I S G ICLDIL ++WSP
Sbjct: 41 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV-YHPNISSVTGAICLDILRNAWSPV 99
Query: 111 MTVSSVCISILSMLSS 126
+T+ S IS+ ++L S
Sbjct: 100 ITLKSALISLQALLQS 115
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 52 GAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLDILYDSWSPA 110
G PGT Y F + ++ P YP + P++ F HP+I S G ICLDIL ++WSP
Sbjct: 40 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV-YHPNISSVTGAICLDILKNAWSPV 98
Query: 111 MTVSSVCISILSMLSS 126
+T+ S IS+ ++L S
Sbjct: 99 ITLKSALISLQALLQS 114
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK--VTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
++ A RL E + +NPP G +N W + G T + F + F
Sbjct: 6 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 65
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSV 116
P YP+ P++ F HP+IY +G +C+ IL+ + WSP +V +
Sbjct: 66 PLDYPLSPPKMRFTCEM-FHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 124
Query: 117 CISILSMLS 125
+S++SML+
Sbjct: 125 LLSVVSMLA 133
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK--VTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
++ A RL E + +NPP G +N W + G T + F + F
Sbjct: 4 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 63
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSV 116
P YP+ P++ F HP+IY +G +C+ IL+ + WSP +V +
Sbjct: 64 PLDYPLSPPKMRFTCEM-FHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 122
Query: 117 CISILSMLS 125
+S++SML+
Sbjct: 123 LLSVVSMLA 131
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK--VTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
++ A RL E + +NPP G +N W + G T + F + F
Sbjct: 3 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 62
Query: 70 PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSV 116
P YP+ P++ F HP+IY +G +C+ IL+ + WSP +V +
Sbjct: 63 PLDYPLSPPKMRFTCEM-FHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 121
Query: 117 CISILSMLSS 126
+S++SML+
Sbjct: 122 LLSVVSMLAE 131
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK--VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
A RL E + +NPP G +N W + G T + F + FP Y
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISI 120
P+ P++ F HP+IY +G +C+ IL+ + WSP +V + +S+
Sbjct: 64 PLSPPKMRFTCEM-FHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 122
Query: 121 LSMLSS 126
+SML+
Sbjct: 123 VSMLAE 128
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 19 RLQKELVEWQVNPPAGFKHKVT-----DNLQRWIIEVNGAPGTLYAN-ETFELQVDFPEH 72
RL+++L + PP + +T D Q +EV P Y N + +DF E
Sbjct: 33 RLKRDLDSLDL-PPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEV 91
Query: 73 YPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISIL 121
YP+E P+V+ L HP+I G++CL+IL + WSPA+ + S+ +L
Sbjct: 92 YPIEPPKVVCLKKI-FHPNIDLKGNVCLNILREDWSPALDLQSIITGLL 139
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 36 KHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI- 92
KH+VT L ++++ G GT Y ++++VD P+ YP ++P + F+ HP+I
Sbjct: 41 KHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKI-FHPNID 99
Query: 93 YSNGHICLDILYDSWSPAMTVSSVCISILSML 124
++G +CLD++ +W+ ++++ S L L
Sbjct: 100 EASGTVCLDVINQTWTALYDLTNIFESFLPQL 131
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 22 KELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
KE+ +PP G K ++L + + G GT YA F +++ + +P P+
Sbjct: 20 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKG 79
Query: 81 IFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 124
FL HP++ +NG IC+++L W+ + + V ++I +L
Sbjct: 80 YFLTKI-FHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL 122
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHKVTD--NLQRW--IIEVNGAPGTLYANETFELQVD 68
S AS RL KEL E + F++ D NL W +I + P Y F ++++
Sbjct: 2 SMAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPP---YDKGAFRIEIN 58
Query: 69 FPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDIL-YDSWSPAMTVSSVCISILSMLSS 126
FP YP + P++ F HP+I G +CL ++ ++W PA V S++++++
Sbjct: 59 FPAEYPFKPPKITFKTKI-YHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVND 116
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRW--IIEVNGAPGTLYANETFELQVDFPE 71
AS RL KEL E + F++ D NL W +I + P Y F ++++FP
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPP---YDKGAFRIEINFPA 59
Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHICLDIL-YDSWSPAMTVSSVCISILSMLSS 126
YP + P++ F HP+I G +CL ++ ++W PA V S++++++
Sbjct: 60 EYPFKPPKITFKTKI-YHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVND 114
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 40 TDNLQRWIIEVNGAPGTLY--ANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGH 97
TD + WI++V ++Y A T++L V F + YP E P V F+ P P + G
Sbjct: 46 TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPV-YSPLVTGEGG 104
Query: 98 ICLDILYDSWSPAMTVSSVCISILSMLSS 126
IC ++ D W+P S V +L + S
Sbjct: 105 ICDRMVNDFWTPDQHASDVIKLVLDRVFS 133
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTL-YANETFELQVDFPE 71
S +AS R+ KEL + Q PP ++ +D+ + P Y + F L++ FP
Sbjct: 2 SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPP 61
Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHICLDIL-YDSWSPAMTVSSVCISILSMLSSSTVK 130
YP + P + F HP++ NG ICL I+ ++W P V ++ +++ ++
Sbjct: 62 EYPFKPPMIKFTTKI-YHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIR 120
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 40 TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI-YSNGHI 98
+D + + +E G GT Y + T+ L V P YP ++P + F LHP++ +G +
Sbjct: 34 SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRI-LHPNVDERSGSV 92
Query: 99 CLDILYDSWSPAMTVSSVCISILSML 124
CLD++ +W+P + ++ L L
Sbjct: 93 CLDVINQTWTPMYQLENIFDVFLPQL 118
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTL-YANETFELQVDFPEHY 73
+AS R+ KEL + Q PP ++ +D+ + P Y + F L++ FP Y
Sbjct: 1 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEY 60
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDIL-YDSWSPAMTVSSVCISILSMLSSSTVK 130
P + P + F HP++ NG ICL I+ ++W P V ++ +++ ++
Sbjct: 61 PFKPPMIKFTTKI-YHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIR 117
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 9 RKALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQV 67
R ++ A L ++ + + N G K V++++ W +E+ G +++ F+L +
Sbjct: 17 RGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTI 76
Query: 68 DFPEHYPMEAPQVIFLPPAPLHPHIY-SNGHICLDILY--DSWSPAMTVSSVCISILSML 124
F Y P V F+ P HP++ G C+D L + W+ T+SS+ +++ ML
Sbjct: 77 HFTSEYNYAPPVVKFI-TIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVML 135
Query: 125 SSSTVK 130
S+ ++
Sbjct: 136 SNPVLE 141
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 42 NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICL 100
+L +W ++G T Y N F + ++ P YPM P++ F+ LH ++ S G ICL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 101 DILY-DSWSPA 110
+IL + W+P
Sbjct: 106 NILKPEEWTPV 116
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 42 NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICL 100
+L +W ++G T Y N F + ++ P YPM P++ F+ LH ++ S G ICL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 101 DILY-DSWSP 109
+IL + W+P
Sbjct: 106 NILKPEEWTP 115
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 42 NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICL 100
+L +W ++G T Y N F + ++ P YPM P++ F+ LH ++ S G ICL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 101 DILY-DSWSPA 110
+IL + W+P
Sbjct: 106 NILKPEEWTPV 116
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 3 SSSAPSRKALSKIASNRLQKELVEWQVNP-PAGFKHKVTDNLQRWIIEVNGAPGTLYANE 61
S S+ S K A+ RL+++ + + +P P + N+ W V G T Y
Sbjct: 2 SMSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGG 61
Query: 62 TFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL---DILYDSWSPAMTVSSVCI 118
+ ++ FP +P + P + + P + N +CL D D+W+PA +VS++
Sbjct: 62 YYHGKLIFPREFPFKPPSIYMITP---NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILT 118
Query: 119 SILSML 124
+LS +
Sbjct: 119 GLLSFM 124
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 33 AGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91
AG+ ++ + Q + + +G GT Y +++ V P+ YP +P + F+ LHP+
Sbjct: 17 AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKL-LHPN 75
Query: 92 I-YSNGHICLDILYDSWSPAMTVSSV 116
+ ++G +CLD++ +W+P ++ +V
Sbjct: 76 VDEASGSVCLDVINQTWTPLYSLVNV 101
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 50 VNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP----LHPHIYSNGHICLDIL-- 103
+ G T YAN FE V FP+ YP P V +P++Y++G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 104 -----YDSWSPAM-TVSSVCISILSML 124
+ W+P + V +S+ S++
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLI 202
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
A R+QK++ E + D+L + + + G Y + F + YP
Sbjct: 7 AQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKVGQGYPH 65
Query: 76 EAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSV 116
+ P+V HP+I G++CL+IL + W P +T++S+
Sbjct: 66 DPPKVK-CETXVYHPNIDLEGNVCLNILREDWKPVLTINSI 105
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
Query: 3 SSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGT-LYANE 61
S++A + L KE+ E + N P K D + ++ P Y
Sbjct: 2 SATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGG 61
Query: 62 TFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD------SWSPAMTVSS 115
F+ + + P+ Y M P+V L HP+I G ICL +L + W+P T+
Sbjct: 62 KFQFETEVPDAYNMVPPKVKCLTKI-WHPNITETGEICLSLLREHSIDGTGWAPTRTLKD 120
Query: 116 VCISILSMLSS 126
V + S+ +
Sbjct: 121 VVWGLNSLFTD 131
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGT-LYANETFELQVDFPEHY 73
+ L KE+ E + N P K D + ++ P Y F+ + + P+ Y
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILYD------SWSPAMTVSSVCISILSMLSS 126
M P+V L HP+I G ICL +L + W+P T+ V + S+ +
Sbjct: 74 NMVPPKVKCLTKI-WHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTD 131
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 65 LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDIL-YDSWSPAMTVSSVCISILSM 123
L F +++P + P V + P ++ G IC+++L WS A ++ SV + I +
Sbjct: 72 LNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISAT 131
Query: 124 LSSSTVKVCF 133
L +V F
Sbjct: 132 LVKGKARVQF 141
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 1 MTSSSAPSRKALSKIASN---RLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTL 57
+ K SK AS R+QK++ E + D+L + + + G
Sbjct: 9 LKQQKKEEEKGSSKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEG-F 67
Query: 58 YANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVC 117
Y + F + YP + P+V HP+I G++ L+IL + W P +T++S+
Sbjct: 68 YKSGKFVFSFKVGQGYPHDPPKVK-CETMVYHPNIDLEGNVALNILREDWKPVLTINSII 126
Query: 118 ISI 120
+
Sbjct: 127 YGL 129
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 61 ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDIL-YDSWSPAMTVSSVCIS 119
E L F +++P + P V + P ++ G +C+++L WS A ++ SV +
Sbjct: 89 EYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQ 148
Query: 120 ILSMLSSSTVKVCF 133
I + L +V F
Sbjct: 149 INATLVKGKARVQF 162
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 19 RLQKELVEWQ---VNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
RL EL Q V+ F + D+ L W + G PGT++ N + L + ++Y
Sbjct: 29 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 88
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILY--DSWSPAMTVSSVCISIL-SMLSSSTVK 130
P P V F + + + G + + L+ +W+ T+ ++ IS+ MLSS+ +
Sbjct: 89 PDSPPTVKFDTKIEMSC-VDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKR 147
Query: 131 V 131
+
Sbjct: 148 L 148
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 19 RLQKELVEWQ---VNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
RL EL Q V+ F + D+ L W + G PGT++ N + L + ++Y
Sbjct: 25 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 84
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHICLDILY--DSWSPAMTVSSVCISIL-SMLSSSTVK 130
P P V F + + + G + + L+ +W+ T+ ++ IS+ MLSS+ +
Sbjct: 85 PDSPPTVKFDTKIEMSC-VDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKR 143
Query: 131 V 131
+
Sbjct: 144 L 144
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 19 RLQKELVEWQVNPPAG-----FKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
RL +EL E Q G + L RW + G P T+Y N + L+++ Y
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHI 98
P P V F+ ++ SNG +
Sbjct: 89 PEAPPFVRFVTKINMNGVNSSNGVV 113
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 19 RLQKELVEWQVNPPAG-----FKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
RL +EL E Q G + L RW + G P T+Y N + L+++ Y
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHI 98
P P V F+ ++ SNG +
Sbjct: 71 PEAPPFVRFVTKINMNGVNSSNGVV 95
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPG---TLYA 59
GF V NL+ W+IEVNGAP LYA
Sbjct: 319 GFDFMVDKNLKVWLIEVNGAPACAQKLYA 347
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 19 RLQKELVEWQVNPPAG-----FKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
RL +EL E Q G + L RW + G P T+Y N + L+++ Y
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHI 98
P P V F+ ++ SNG +
Sbjct: 99 PEAPPFVRFVTKINMNGVNSSNGVV 123
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPG---TLYA 59
GF V + L+ W+IEVNGAP LYA
Sbjct: 316 GFDFMVDEELKVWLIEVNGAPACAQKLYA 344
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 19 RLQKELVEWQVNPPAG-----FKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
RL +EL E Q G + L RW + G P T Y N + L+V+ Y
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 74 PMEAPQVIFL 83
P P V F+
Sbjct: 79 PEAPPSVRFV 88
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 19 RLQKELVEWQVNPPAG-----FKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
RL +EL E Q G + L RW + G P T Y N + L+V+ Y
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 73
Query: 74 PMEAPQVIFL 83
P P V F+
Sbjct: 74 PEAPPSVRFV 83
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFL 83
G + L RW + G P T Y N + L+V+ YP P V F+
Sbjct: 29 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFV 78
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFL 83
G + L RW + G P T Y N + L+V+ YP P V F+
Sbjct: 28 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFV 77
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 12 LSKIASN-RLQKELVEWQVN-PPAGFKHKVTDN----LQRWIIEVNGAPGTLYANETFEL 65
+SK+ N RL +EL + + P + + D+ + +W + G P + + N + L
Sbjct: 1 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 60
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDI-LYDSWSPAMTVSSVCISILSML 124
+D +YP P+V F+ L + G + D W A T+ ++ + + +
Sbjct: 61 SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEM 120
Query: 125 SSSTVK 130
++ K
Sbjct: 121 ATPANK 126
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 12 LSKIASN-RLQKELVEWQVN-PPAGFKHKVTDN----LQRWIIEVNGAPGTLYANETFEL 65
+SK+ N RL +EL + + P + + D+ + +W + G P + + N + L
Sbjct: 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 61
Query: 66 QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDI-LYDSWSPAMTVSSVCISILSML 124
+D +YP P+V F+ L + G + D W A T+ ++ + + +
Sbjct: 62 SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEM 121
Query: 125 SSSTVK 130
++ K
Sbjct: 122 ATPANK 127
>pdb|4DPK|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPM|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|E Chain E, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|F Chain F, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPL|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
Length = 359
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 78 PQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKVC 132
PQ + LP AP P I N + +D W+ + SV + L ++ +++
Sbjct: 276 PQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLV 330
>pdb|2K07|A Chain A, Solution Nmr Structure Of Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
F+++ D P YP AP++ +Y G ICL
Sbjct: 80 FDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICL 117
>pdb|2Z6O|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
F+++ D P YP AP++ +Y G ICL
Sbjct: 85 FDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICL 122
>pdb|2Z6P|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
F+++ D P YP AP++ Y G ICL
Sbjct: 85 FDIEFDIPITYPTTAPEIAVPELDGKTAKXYRGGKICL 122
>pdb|3EVX|A Chain A, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|B Chain B, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|C Chain C, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|D Chain D, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
F+++ D P YP AP++ Y G ICL
Sbjct: 80 FDIEFDIPITYPTTAPEIAVPELDGKTAKXYRGGKICL 117
>pdb|3VSR|A Chain A, Arthrobacter Sp. K-1 Beta-Fructofuranosidase
pdb|3VSS|A Chain A, Arthrobacter Sp. K-1 Beta-Fructofuranosidase Complexed
With Fructose
Length = 496
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 22 KELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYA---NETFELQVDFPE 71
K+L EW+ PP + VTD +R I L+ TF +D PE
Sbjct: 316 KQLTEWEFLPPILSANCVTDQTERPQIYFKDGKSYLFTISHRGTFAAGLDGPE 368
>pdb|3KPA|A Chain A, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|B Chain B, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|C Chain C, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
Length = 168
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 45 RWIIEVNGAPGTLYANETFELQVDF--PEHYPMEAPQVIFLPPAPLHPHIYSNGHIC 99
RW G T Y NE +E + +F P YP P++ Y G IC
Sbjct: 71 RWY----GTCWTYYKNEKYEFEXNFDIPVTYPQAPPEIALPELEGKTVKXYRGGKIC 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,106,349
Number of Sequences: 62578
Number of extensions: 164035
Number of successful extensions: 568
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 131
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)