Query 032794
Match_columns 133
No_of_seqs 157 out of 1111
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 9.3E-48 2E-52 263.3 11.9 115 16-131 2-117 (148)
2 COG5078 Ubiquitin-protein liga 100.0 8.7E-47 1.9E-51 263.3 13.7 117 14-131 4-122 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 7.7E-45 1.7E-49 243.3 11.7 119 12-131 1-120 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 1.2E-42 2.7E-47 244.1 14.7 115 16-131 3-118 (152)
5 PLN00172 ubiquitin conjugating 100.0 2.3E-42 5E-47 241.6 14.2 116 16-132 2-118 (147)
6 KOG0418 Ubiquitin-protein liga 100.0 1.4E-40 3E-45 234.8 10.7 118 12-131 1-123 (200)
7 KOG0427 Ubiquitin conjugating 100.0 2.5E-39 5.4E-44 216.8 13.1 132 1-132 1-132 (161)
8 KOG0425 Ubiquitin-protein liga 100.0 5.9E-39 1.3E-43 220.6 12.5 115 16-131 6-135 (171)
9 KOG0421 Ubiquitin-protein liga 100.0 3E-39 6.6E-44 219.4 10.7 118 13-131 27-145 (175)
10 KOG0424 Ubiquitin-protein liga 100.0 5.1E-38 1.1E-42 213.3 12.0 119 12-131 1-127 (158)
11 PF00179 UQ_con: Ubiquitin-con 100.0 5E-38 1.1E-42 217.9 11.4 113 19-132 1-116 (140)
12 KOG0426 Ubiquitin-protein liga 100.0 1E-37 2.2E-42 209.3 11.3 119 12-131 1-134 (165)
13 cd00195 UBCc Ubiquitin-conjuga 100.0 6.7E-37 1.4E-41 212.5 13.5 113 18-131 2-116 (141)
14 smart00212 UBCc Ubiquitin-conj 100.0 4.1E-35 9E-40 204.4 13.2 113 18-131 1-116 (145)
15 KOG0422 Ubiquitin-protein liga 100.0 2.2E-34 4.7E-39 194.6 10.4 115 15-131 2-119 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 3.2E-33 7E-38 194.9 9.7 122 7-132 20-146 (184)
17 KOG0894 Ubiquitin-protein liga 100.0 1E-30 2.2E-35 188.3 13.1 115 12-129 2-120 (244)
18 KOG0423 Ubiquitin-protein liga 100.0 7.4E-32 1.6E-36 188.5 5.0 123 9-132 4-127 (223)
19 KOG0416 Ubiquitin-protein liga 100.0 1.3E-29 2.8E-34 176.6 8.7 111 17-131 5-118 (189)
20 KOG0428 Non-canonical ubiquiti 99.9 7.5E-24 1.6E-28 155.6 10.2 114 9-126 5-122 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 2.6E-19 5.7E-24 152.3 7.6 115 15-129 851-974 (1101)
22 KOG0895 Ubiquitin-conjugating 99.7 2.6E-17 5.6E-22 140.3 12.2 119 9-127 276-405 (1101)
23 KOG0429 Ubiquitin-conjugating 99.7 1.5E-15 3.2E-20 110.4 10.6 113 18-132 22-139 (258)
24 KOG0896 Ubiquitin-conjugating 99.5 4.1E-14 8.8E-19 95.7 7.8 109 17-126 7-123 (138)
25 KOG0897 Predicted ubiquitin-co 99.1 1.4E-10 3E-15 76.5 3.5 69 63-131 13-82 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.7 2.2E-08 4.7E-13 68.9 5.6 68 59-126 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.4 8.9E-07 1.9E-11 60.0 6.5 84 44-128 29-119 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.4 3.9E-07 8.4E-12 62.6 3.4 99 14-117 23-135 (161)
29 KOG2391 Vacuolar sorting prote 97.9 0.00018 3.8E-09 56.2 9.5 79 50-130 55-141 (365)
30 KOG3357 Uncharacterized conser 97.6 0.00012 2.5E-09 49.9 5.0 100 13-117 25-138 (167)
31 PF05773 RWD: RWD domain; Int 96.9 0.0048 1E-07 40.2 6.3 69 17-85 3-73 (113)
32 PF14462 Prok-E2_E: Prokaryoti 96.6 0.033 7.2E-07 37.8 8.8 87 34-125 13-120 (122)
33 smart00591 RWD domain in RING 95.7 0.086 1.9E-06 33.9 7.2 27 59-85 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 94.9 0.049 1.1E-06 38.7 4.3 61 65-125 57-125 (162)
35 PF09765 WD-3: WD-repeat regio 91.8 0.4 8.7E-06 37.2 5.1 89 14-125 98-187 (291)
36 KOG4018 Uncharacterized conser 85.5 3.4 7.3E-05 30.7 5.9 29 62-90 50-78 (215)
37 KOG0309 Conserved WD40 repeat- 81.8 9.1 0.0002 33.8 7.7 66 18-85 423-491 (1081)
38 PF06113 BRE: Brain and reprod 72.2 6.2 0.00013 31.3 3.9 28 60-89 305-332 (333)
39 cd00421 intradiol_dioxygenase 71.1 7.3 0.00016 26.9 3.7 25 60-84 65-90 (146)
40 PF06113 BRE: Brain and reprod 70.7 18 0.00038 28.8 6.1 60 57-122 61-122 (333)
41 cd03457 intradiol_dioxygenase_ 70.5 7.4 0.00016 28.3 3.8 25 60-84 86-110 (188)
42 smart00340 HALZ homeobox assoc 65.4 6 0.00013 21.7 1.8 15 16-30 20-34 (44)
43 cd03459 3,4-PCD Protocatechuat 62.3 14 0.0003 26.0 3.8 25 60-84 72-101 (158)
44 KOG0177 20S proteasome, regula 53.3 5.8 0.00012 29.0 0.6 31 95-125 135-165 (200)
45 KOG1047 Bifunctional leukotrie 53.2 14 0.00031 31.4 2.9 30 56-86 248-280 (613)
46 TIGR02423 protocat_alph protoc 51.3 25 0.00053 25.7 3.6 25 60-84 96-125 (193)
47 cd05845 Ig2_L1-CAM_like Second 47.9 52 0.0011 21.0 4.4 26 58-85 16-41 (95)
48 cd03463 3,4-PCD_alpha Protocat 47.6 31 0.00067 25.0 3.6 24 61-84 93-121 (185)
49 KOG4445 Uncharacterized conser 47.1 29 0.00062 27.4 3.5 26 61-86 45-70 (368)
50 PF14460 Prok-E2_D: Prokaryoti 45.5 41 0.00089 23.9 4.0 14 90-103 98-111 (175)
51 KOG0662 Cyclin-dependent kinas 44.8 28 0.0006 25.9 3.0 56 75-131 167-226 (292)
52 TIGR03737 PRTRC_B PRTRC system 43.5 38 0.00082 25.5 3.6 14 90-103 139-152 (228)
53 PF03366 YEATS: YEATS family; 40.7 91 0.002 19.5 5.3 40 44-85 2-41 (84)
54 TIGR02439 catechol_proteo cate 36.9 53 0.0012 25.5 3.7 25 60-84 180-222 (285)
55 PF00779 BTK: BTK motif; Inte 34.7 13 0.00028 19.1 -0.0 16 88-103 3-19 (32)
56 cd03461 1,2-HQD Hydroxyquinol 34.6 61 0.0013 25.1 3.7 25 60-84 172-214 (277)
57 PF09606 Med15: ARC105 or Med1 33.9 14 0.00029 32.8 0.0 24 61-84 714-737 (799)
58 TIGR02438 catachol_actin catec 33.5 67 0.0014 24.9 3.7 25 60-84 184-226 (281)
59 PF00845 Gemini_BL1: Geminivir 33.1 1.1E+02 0.0023 23.5 4.5 42 44-85 103-152 (276)
60 cd03464 3,4-PCD_beta Protocate 32.1 74 0.0016 23.7 3.6 25 60-84 122-153 (220)
61 cd03460 1,2-CTD Catechol 1,2 d 32.0 72 0.0016 24.7 3.7 25 60-84 176-218 (282)
62 PF12065 DUF3545: Protein of u 31.3 35 0.00076 20.1 1.4 13 17-29 36-48 (59)
63 TIGR02422 protocat_beta protoc 30.7 80 0.0017 23.5 3.6 24 60-83 117-147 (220)
64 PF04881 Adeno_GP19K: Adenovir 29.9 65 0.0014 22.1 2.7 31 39-69 43-74 (139)
65 TIGR02465 chlorocat_1_2 chloro 28.6 94 0.002 23.6 3.7 25 60-84 150-192 (246)
66 PF13950 Epimerase_Csub: UDP-g 28.2 59 0.0013 19.0 2.1 18 106-123 37-54 (62)
67 PF08203 RNA_polI_A14: Yeast R 27.0 48 0.001 20.5 1.6 13 15-27 59-71 (76)
68 COG4957 Predicted transcriptio 24.3 38 0.00083 23.5 0.9 15 65-79 106-120 (148)
69 COG3866 PelB Pectate lyase [Ca 23.9 1.5E+02 0.0032 23.6 4.1 40 44-84 197-240 (345)
70 PRK11700 hypothetical protein; 23.6 3E+02 0.0065 20.1 5.4 71 42-118 87-183 (187)
71 cd03458 Catechol_intradiol_dio 23.2 1.3E+02 0.0029 23.0 3.7 25 60-84 156-198 (256)
72 PF03487 IL13: Interleukin-13; 22.8 1.3E+02 0.0029 16.3 2.6 21 10-30 22-42 (43)
73 PF11745 DUF3304: Protein of u 22.2 55 0.0012 21.7 1.3 21 94-114 49-69 (118)
74 smart00107 BTK Bruton's tyrosi 21.5 46 0.00099 17.5 0.7 16 88-103 8-24 (36)
75 cd03462 1,2-CCD chlorocatechol 20.5 1.6E+02 0.0035 22.4 3.7 25 60-84 151-193 (247)
76 PF06468 Spond_N: Spondin_N; 20.1 1E+02 0.0023 22.4 2.5 23 62-84 3-32 (196)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-48 Score=263.35 Aligned_cols=115 Identities=47% Similarity=0.809 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhhCCCCCcEEe-eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCccccC
Q 032794 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (133)
Q Consensus 16 ~~~Rl~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~~ 94 (133)
+.+||.||++++++++++||++. .++|+++|+++|.||.|||||||.|+++|.||++||++||+|+|.| +||||||+.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~T-kIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLT-KIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeec-ccccCCcCc
Confidence 35699999999999999999998 4789999999999999999999999999999999999999999999 799999999
Q ss_pred CCeeecccCCCCCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 95 NGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 95 ~G~vcl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
.|.||+|+|++.|+|+++|..||.+|++||.+|++++
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~Pnpdd 117 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDD 117 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999986
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-47 Score=263.29 Aligned_cols=117 Identities=38% Similarity=0.731 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcEEee-CC-CceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCcc
Q 032794 14 KIASNRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91 (133)
Q Consensus 14 ~~~~~Rl~~El~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpn 91 (133)
..+.+||++|+++|++++++++++.. ++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.| +|||||
T Consensus 4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t-~i~HPN 82 (153)
T COG5078 4 PSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTT-KIFHPN 82 (153)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecc-CCcCCC
Confidence 33899999999999999999999873 44 9999999999999999999999999999999999999999999 699999
Q ss_pred ccCCCeeecccCCCCCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 92 IYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 92 v~~~G~vcl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
|+.+|+||+|+|.+.|+|+++|++||.+|+++|.+|+.++
T Consensus 83 V~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~ 122 (153)
T COG5078 83 VDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDS 122 (153)
T ss_pred cCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999999999999875
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-45 Score=243.30 Aligned_cols=119 Identities=36% Similarity=0.709 Sum_probs=114.4
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCcEEe-eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCc
Q 032794 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP 90 (133)
Q Consensus 12 ~~~~~~~Rl~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hp 90 (133)
|+..|.+||.+|+++++++++.|++.. .++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|++ ++|||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs-~mFHP 79 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS-KMFHP 79 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee-eccCC
Confidence 567789999999999999999999987 5789999999999999999999999999999999999999999999 89999
Q ss_pred cccCCCeeecccCCCCCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 91 HIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 91 nv~~~G~vcl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
|||.+|.+|+|+|+..|+|.|++.+||.+||+||.+|+++.
T Consensus 80 Nvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~s 120 (152)
T KOG0419|consen 80 NVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNS 120 (152)
T ss_pred CcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999864
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.2e-42 Score=244.05 Aligned_cols=115 Identities=39% Similarity=0.696 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhhCCCCCcEEe-eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCccccC
Q 032794 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (133)
Q Consensus 16 ~~~Rl~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~~ 94 (133)
+.+||++|+++|++++++|+.+. .++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.| ++|||||+.
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t-~i~HPNV~~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLT-KIYHPNIDK 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEec-CCeeceECC
Confidence 57899999999999999999987 4679999999999999999999999999999999999999999999 699999999
Q ss_pred CCeeecccCCCCCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 95 NGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 95 ~G~vcl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
+|.||+++|.++|+|++||++||++|+++|.+|++++
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~ 118 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDD 118 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999876
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.3e-42 Score=241.60 Aligned_cols=116 Identities=41% Similarity=0.699 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhhCCCCCcEEe-eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCccccC
Q 032794 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (133)
Q Consensus 16 ~~~Rl~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~~ 94 (133)
+.+||++|+++|++++++++++. .++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.| ++|||||+.
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPNv~~ 80 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTT-KIYHPNINS 80 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEec-CcccceECC
Confidence 46899999999999999999887 4679999999999999999999999999999999999999999999 699999999
Q ss_pred CCeeecccCCCCCCCcCCHHHHHHHHHHhhCCCCcCCC
Q 032794 95 NGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKVC 132 (133)
Q Consensus 95 ~G~vcl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~~ 132 (133)
+|.||+++|.++|+|+++|++||.+|+++|.+|+.++.
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p 118 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDP 118 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999998763
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=234.82 Aligned_cols=118 Identities=36% Similarity=0.637 Sum_probs=110.6
Q ss_pred ccHHHHHHHHHHHHHHhhCC---CCCcEEe-eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCC
Q 032794 12 LSKIASNRLQKELVEWQVNP---PAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP 87 (133)
Q Consensus 12 ~~~~~~~Rl~~El~~l~~~~---~~~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i 87 (133)
|+. +.+||++|++++.+++ ..||.+. ..+|+.+..+.|.||+|||||||.|.++|++|++|||+||+|+|.| +|
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~T-kI 78 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFIT-KI 78 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeee-ee
Confidence 344 7899999999999987 5788887 5689999999999999999999999999999999999999999999 89
Q ss_pred cCccccC-CCeeecccCCCCCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 88 LHPHIYS-NGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 88 ~Hpnv~~-~G~vcl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
|||||++ +|.||+|+|++.|++++||+++|++||++|+.|++++
T Consensus 79 wHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~d 123 (200)
T KOG0418|consen 79 WHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKD 123 (200)
T ss_pred ecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCC
Confidence 9999986 9999999999999999999999999999999999875
No 7
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=216.81 Aligned_cols=132 Identities=84% Similarity=1.348 Sum_probs=127.7
Q ss_pred CCCCCCcCcccccHHHHHHHHHHHHHHhhCCCCCcEEeeCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeE
Q 032794 1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80 (133)
Q Consensus 1 m~~s~~~~~~~~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 80 (133)
|+||++.+.+.++..+.+||+|||.+++.+++.|+.....+|+.+|.+.+.|.+||.|+|..|.+.++||+.||++.|+|
T Consensus 1 mtss~~~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqV 80 (161)
T KOG0427|consen 1 MTSSSAPSRKALSKIATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQV 80 (161)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcCccccCCCeeecccCCCCCCCcCCHHHHHHHHHHhhCCCCcCCC
Q 032794 81 IFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKVC 132 (133)
Q Consensus 81 ~f~tp~i~Hpnv~~~G~vcl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~~ 132 (133)
.|..|...||+||++|.||+++|.++|+|++++.+|.++|.++|.+-..++|
T Consensus 81 mF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqr 132 (161)
T KOG0427|consen 81 MFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQR 132 (161)
T ss_pred EEecCCCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccC
Confidence 9999866999999999999999999999999999999999999988776654
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-39 Score=220.65 Aligned_cols=115 Identities=35% Similarity=0.690 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhhCCCCCcEEe--eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCcccc
Q 032794 16 ASNRLQKELVEWQVNPPAGFKHK--VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93 (133)
Q Consensus 16 ~~~Rl~~El~~l~~~~~~~~~~~--~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~ 93 (133)
+..-|+++|++|++++.+|+++. +++|+++|.|.|+||++|+||||.|+..+.||.+||.+||+++|.| ++||||||
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s-~mwHPNvy 84 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS-KMWHPNVY 84 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh-hhcCCCcC
Confidence 66789999999999999999987 4569999999999999999999999999999999999999999999 89999999
Q ss_pred CCCeeecccCC-------------CCCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 94 SNGHICLDILY-------------DSWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 94 ~~G~vcl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
++|.||++||- +.|.|..|+++||++|.++|.+||-+.
T Consensus 85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~S 135 (171)
T KOG0425|consen 85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDES 135 (171)
T ss_pred CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCC
Confidence 99999999993 379999999999999999999998754
No 9
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-39 Score=219.37 Aligned_cols=118 Identities=34% Similarity=0.670 Sum_probs=112.2
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCcEEe-eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCcc
Q 032794 13 SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91 (133)
Q Consensus 13 ~~~~~~Rl~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpn 91 (133)
.....|||++||..|+-...+||++. ++||++.|..+|.||.+|+|+|-.|++.+.||.+||++||+|+|+|| .||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltp-c~HPN 105 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTP-CFHPN 105 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecc-ccCCC
Confidence 55678999999999999999999987 46799999999999999999999999999999999999999999996 79999
Q ss_pred ccCCCeeecccCCCCCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 92 IYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 92 v~~~G~vcl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
||..|.||+|||++.|+..|+++.||++||+||-+|+.+.
T Consensus 106 VD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~S 145 (175)
T KOG0421|consen 106 VDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSS 145 (175)
T ss_pred ccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999764
No 10
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-38 Score=213.25 Aligned_cols=119 Identities=36% Similarity=0.774 Sum_probs=110.3
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCcEEee------CCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q 032794 12 LSKIASNRLQKELVEWQVNPPAGFKHKV------TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (133)
Q Consensus 12 ~~~~~~~Rl~~El~~l~~~~~~~~~~~~------~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp 85 (133)
||..+..||+.|-+.+.++.+-|+.+.+ ..|++.|++.|.|+.||+||||.|.+.+.||++||.+||+++|.+|
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 3455789999999999999999998762 2389999999999999999999999999999999999999999997
Q ss_pred CCcCccccCCCeeecccCCC--CCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 86 APLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 86 ~i~Hpnv~~~G~vcl~~l~~--~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
.||||||.+|.|||++|.+ +|+|++||.+||.+||.||.+||..+
T Consensus 81 -l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~ 127 (158)
T KOG0424|consen 81 -LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITS 127 (158)
T ss_pred -CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCC
Confidence 8999999999999999986 49999999999999999999999875
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=5e-38 Score=217.86 Aligned_cols=113 Identities=46% Similarity=0.819 Sum_probs=101.4
Q ss_pred HHHHHHHHHhhCCCCCcEEee-CC-CceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCccccCCC
Q 032794 19 RLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNG 96 (133)
Q Consensus 19 Rl~~El~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~~~G 96 (133)
||++|+++++++++.|+.+.. ++ |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.| .++||||+.+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t-~i~HPni~~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLT-PIFHPNIDENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESS-S-SBTTB-TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccc-ccccccccccc
Confidence 899999999999999999874 44 8999999999999999999999999999999999999999999 69999999999
Q ss_pred eeecccCCC-CCCCcCCHHHHHHHHHHhhCCCCcCCC
Q 032794 97 HICLDILYD-SWSPAMTVSSVCISILSMLSSSTVKVC 132 (133)
Q Consensus 97 ~vcl~~l~~-~W~p~~~i~~vl~~i~~ll~~p~~~~~ 132 (133)
+||+++|.. .|+|+++|.+||.+|+++|.+|+.++.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~ 116 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDP 116 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTST
T ss_pred cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCc
Confidence 999999985 599999999999999999999977653
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-37 Score=209.27 Aligned_cols=119 Identities=30% Similarity=0.647 Sum_probs=111.8
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCcEEe--eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcC
Q 032794 12 LSKIASNRLQKELVEWQVNPPAGFKHK--VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (133)
Q Consensus 12 ~~~~~~~Rl~~El~~l~~~~~~~~~~~--~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~H 89 (133)
|+.+|.|||.+||++|..++++||.+. .+||.+.|.++|.||++|+|+||.|..++.||.|||.+||+++|.. .+||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc-~~fH 79 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC-EMFH 79 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec-cccc
Confidence 456789999999999999999999986 4679999999999999999999999999999999999999999998 7999
Q ss_pred ccccCCCeeecccCC-------------CCCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 90 PHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 90 pnv~~~G~vcl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
|||+.+|+||+++|. +.|+|.++++.||+++.++|.+|+.+.
T Consensus 80 PNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdES 134 (165)
T KOG0426|consen 80 PNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDES 134 (165)
T ss_pred CcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCccc
Confidence 999999999999993 489999999999999999999998764
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=6.7e-37 Score=212.50 Aligned_cols=113 Identities=39% Similarity=0.766 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhhCCCCCcEEee-CCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCccccCCC
Q 032794 18 NRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNG 96 (133)
Q Consensus 18 ~Rl~~El~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~~~G 96 (133)
+||++|++++++++..|+.+.. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.| .++||||+.+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~-~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVT-KIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeC-CcccCCCCCCC
Confidence 6999999999999999998875 469999999999999999999999999999999999999999999 69999999999
Q ss_pred eeecccCCCC-CCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 97 HICLDILYDS-WSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 97 ~vcl~~l~~~-W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
.||+++|..+ |+|+++|.+||.+|+++|.+|+.+.
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~ 116 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSD 116 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCC
Confidence 9999999877 9999999999999999999998764
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=4.1e-35 Score=204.35 Aligned_cols=113 Identities=42% Similarity=0.779 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhCCCCCcEEee-C-CCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCccccCC
Q 032794 18 NRLQKELVEWQVNPPAGFKHKV-T-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN 95 (133)
Q Consensus 18 ~Rl~~El~~l~~~~~~~~~~~~-~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~~~ 95 (133)
+||++|++++++++..|+.+.. + +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+ .++||||+.+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~-~i~Hp~i~~~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFIT-KIYHPNVDSS 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeC-CceEeeECCC
Confidence 5999999999999999998763 4 49999999999999999999999999999999999999999999 5899999999
Q ss_pred CeeecccCC-CCCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 96 GHICLDILY-DSWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 96 G~vcl~~l~-~~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
|.||+++|. ++|+|++++.+||.+|+++|.+|+.++
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~ 116 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDS 116 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCC
Confidence 999999998 899999999999999999999998765
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-34 Score=194.64 Aligned_cols=115 Identities=28% Similarity=0.581 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCcEE-e-eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCccc
Q 032794 15 IASNRLQKELVEWQVNPPAGFKH-K-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (133)
Q Consensus 15 ~~~~Rl~~El~~l~~~~~~~~~~-~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv 92 (133)
++.+||.|||++|++++...+.- . ++.|++.|.+.|. |.+-||..|.|+++|.||.+|||+||+|.|.| +||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~t-kiYHpNV 79 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKT-KIYHPNV 79 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeee-eeccCCC
Confidence 36789999999999998876653 3 4679999999999 88889999999999999999999999999999 8999999
Q ss_pred cCCCeeecccCC-CCCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 93 YSNGHICLDILY-DSWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 93 ~~~G~vcl~~l~-~~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
|+.|.||+.++. ++|.|+...++||++|.+++.+|+++.
T Consensus 80 De~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~ 119 (153)
T KOG0422|consen 80 DEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEH 119 (153)
T ss_pred CCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccc
Confidence 999999999985 799999999999999999999999864
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-33 Score=194.92 Aligned_cols=122 Identities=24% Similarity=0.490 Sum_probs=105.9
Q ss_pred cCcccccHHHHHHHHHHHHHHhhCCCCCcEE--ee-CCCce--eEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEE
Q 032794 7 PSRKALSKIASNRLQKELVEWQVNPPAGFKH--KV-TDNLQ--RWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVI 81 (133)
Q Consensus 7 ~~~~~~~~~~~~Rl~~El~~l~~~~~~~~~~--~~-~~~~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 81 (133)
++.....+++.-||++|+.++.. +++++. .. .++++ +++++|. |.++.|+||.|+|.+.+|+.||++||+|+
T Consensus 20 ~~~~~~~s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVk 96 (184)
T KOG0420|consen 20 TSTRKKVSAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVK 96 (184)
T ss_pred ccccccccHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeee
Confidence 34556677888899999988875 445553 32 23443 5888888 88889999999999999999999999999
Q ss_pred EecCCCcCccccCCCeeecccCCCCCCCcCCHHHHHHHHHHhhCCCCcCCC
Q 032794 82 FLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKVC 132 (133)
Q Consensus 82 f~tp~i~Hpnv~~~G~vcl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~~ 132 (133)
|+| ++||||||.+|.|||+||+++|+|+.+|.+|+.+++.||.+|++++.
T Consensus 97 Clt-kV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDp 146 (184)
T KOG0420|consen 97 CLT-KVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDP 146 (184)
T ss_pred eee-ccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCccc
Confidence 999 89999999999999999999999999999999999999999998874
No 17
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-30 Score=188.26 Aligned_cols=115 Identities=28% Similarity=0.515 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHHHHHHhhCCCCCcEEee-CCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCc
Q 032794 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP 90 (133)
Q Consensus 12 ~~~~~~~Rl~~El~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hp 90 (133)
++.+|.+||+|||+.|+++|.++|.+.+ ++|+.+||.+|.||+||||+||.|+..|.||.+||++||.|+++||...
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGR-- 79 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGR-- 79 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCc--
Confidence 4678999999999999999999999884 7899999999999999999999999999999999999999999999432
Q ss_pred cccCCCeeecccCC---CCCCCcCCHHHHHHHHHHhhCCCCc
Q 032794 91 HIYSNGHICLDILY---DSWSPAMTVSSVCISILSMLSSSTV 129 (133)
Q Consensus 91 nv~~~G~vcl~~l~---~~W~p~~~i~~vl~~i~~ll~~p~~ 129 (133)
+-.+-++||++-. +.|+|.+++.+||.+|.++|.+..+
T Consensus 80 -FktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 80 -FKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred -eecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 3446799998874 7899999999999999999988765
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.4e-32 Score=188.48 Aligned_cols=123 Identities=27% Similarity=0.565 Sum_probs=116.8
Q ss_pred cccccHHHHHHHHHHHHHHhhCCCCCcEEee-CCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCC
Q 032794 9 RKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP 87 (133)
Q Consensus 9 ~~~~~~~~~~Rl~~El~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i 87 (133)
.++...-.++.+.+|++.+...|+.||.+.+ ++|.....+.|.||.||||++|.|++.+.+.+|||.+||+-.|+| +|
T Consensus 4 nenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlT-KI 82 (223)
T KOG0423|consen 4 NENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLT-KI 82 (223)
T ss_pred ccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeee-ee
Confidence 4777888899999999999999999999874 568888999999999999999999999999999999999999999 89
Q ss_pred cCccccCCCeeecccCCCCCCCcCCHHHHHHHHHHhhCCCCcCCC
Q 032794 88 LHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKVC 132 (133)
Q Consensus 88 ~Hpnv~~~G~vcl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~~ 132 (133)
|||||..+|.||.+.|..+|+|..+|.+||..|+++|.+|+++..
T Consensus 83 FHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESA 127 (223)
T KOG0423|consen 83 FHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESA 127 (223)
T ss_pred ccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHH
Confidence 999999999999999999999999999999999999999999864
No 19
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=176.62 Aligned_cols=111 Identities=20% Similarity=0.595 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhhCCCCCcEEe-eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCccccC-
Q 032794 17 SNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS- 94 (133)
Q Consensus 17 ~~Rl~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~~- 94 (133)
.||+..|+..|... +..+. .++++.+++|.+.||.+|||+||++++++.+|++||++.|+|.|.+ +||||||+.
T Consensus 5 ~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvn-KIfHPNIDe~ 80 (189)
T KOG0416|consen 5 KRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVN-KIFHPNIDEA 80 (189)
T ss_pred ccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCccccee-eccCCCchhc
Confidence 57999999998853 45566 4567999999999999999999999999999999999999999999 899999997
Q ss_pred CCeeecccCCCCCCCcCCHHHHHHH-HHHhhCCCCcCC
Q 032794 95 NGHICLDILYDSWSPAMTVSSVCIS-ILSMLSSSTVKV 131 (133)
Q Consensus 95 ~G~vcl~~l~~~W~p~~~i~~vl~~-i~~ll~~p~~~~ 131 (133)
+|.||||.+++.|+|.+.+..|+.. |-.||..|++-+
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~D 118 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSD 118 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCC
Confidence 9999999999999999999999855 478888888765
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.5e-24 Score=155.60 Aligned_cols=114 Identities=27% Similarity=0.611 Sum_probs=100.5
Q ss_pred cccccHHHHHHHHHHHHHHhhCCCCCcEEe-eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCC
Q 032794 9 RKALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP 87 (133)
Q Consensus 9 ~~~~~~~~~~Rl~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i 87 (133)
+.+..+.+.|||+||.++++ +|...+.+. -+||+++|+++|.||.||-||||+|+.+|.||.+||++||.+..+||..
T Consensus 5 rYN~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG 83 (314)
T KOG0428|consen 5 RYNLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG 83 (314)
T ss_pred hhcccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC
Confidence 45677889999999999999 676667665 5899999999999999999999999999999999999999999999843
Q ss_pred cCccccCCCeeecccCC---CCCCCcCCHHHHHHHHHHhhCC
Q 032794 88 LHPHIYSNGHICLDILY---DSWSPAMTVSSVCISILSMLSS 126 (133)
Q Consensus 88 ~Hpnv~~~G~vcl~~l~---~~W~p~~~i~~vl~~i~~ll~~ 126 (133)
. +..+-+||+++-. +.|.|+|+|...|++|..+|-.
T Consensus 84 R---FE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 84 R---FEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred c---eeeCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 2 4557789999874 7999999999999999988743
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.6e-19 Score=152.26 Aligned_cols=115 Identities=25% Similarity=0.533 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCcEEe-eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCC-CcCccc
Q 032794 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPA-PLHPHI 92 (133)
Q Consensus 15 ~~~~Rl~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~-i~Hpnv 92 (133)
...+..+.|++-|..+.+.||.+. .++.+....+.|.||.||||++|.|.|+|.||++||..||.|...+-. .++||.
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 556667778888888888999988 456666678999999999999999999999999999999999999852 389999
Q ss_pred cCCCeeecccCC-------CCCCCcCCHHHHHHHHHHhhCCCCc
Q 032794 93 YSNGHICLDILY-------DSWSPAMTVSSVCISILSMLSSSTV 129 (133)
Q Consensus 93 ~~~G~vcl~~l~-------~~W~p~~~i~~vl~~i~~ll~~p~~ 129 (133)
|.+|+||+++|. +-|+|+.++.+||++||.|+.+.++
T Consensus 931 y~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~p 974 (1101)
T KOG0895|consen 931 YEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEP 974 (1101)
T ss_pred ccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccccc
Confidence 999999999995 4799999999999999999866543
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.6e-17 Score=140.30 Aligned_cols=119 Identities=29% Similarity=0.530 Sum_probs=107.2
Q ss_pred cccccHHHHHHHHHHHHHHhhCCCCCcEEe-eCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC--
Q 032794 9 RKALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP-- 85 (133)
Q Consensus 9 ~~~~~~~~~~Rl~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp-- 85 (133)
.+.-+..+.+|+++|++.+.++.++|+.+. .+..+....++|.||.||||++|+|.|+|.||..||..||.+.++|-
T Consensus 276 ~k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~ 355 (1101)
T KOG0895|consen 276 SKPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGG 355 (1101)
T ss_pred CCccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccc
Confidence 445567789999999999999999998887 46688899999999999999999999999999999999999999994
Q ss_pred CCcCccccCCCeeecccCC-------CCCCCc-CCHHHHHHHHHHhhCCC
Q 032794 86 APLHPHIYSNGHICLDILY-------DSWSPA-MTVSSVCISILSMLSSS 127 (133)
Q Consensus 86 ~i~Hpnv~~~G~vcl~~l~-------~~W~p~-~~i~~vl~~i~~ll~~p 127 (133)
..+.||.|.+|+||+++|- +.|+|. .+|.++|..||.++.+.
T Consensus 356 ~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 356 VRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred eeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 2489999999999999982 579999 78999999999998776
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.5e-15 Score=110.44 Aligned_cols=113 Identities=19% Similarity=0.344 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhhCCCCCcEEeeC-CCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCC--CCCeEEEecCCCcCccccC
Q 032794 18 NRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM--EAPQVIFLPPAPLHPHIYS 94 (133)
Q Consensus 18 ~Rl~~El~~l~~~~~~~~~~~~~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~tp~i~Hpnv~~ 94 (133)
--|+.|+..+.+.+..||.+.+. .|-+.|.++|++..| .|.||+|+|.|.+|++||. .-|+|.|.++ .+||+|..
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~-vfHP~icp 99 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQS-VFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeecc-ccccccCC
Confidence 45778888888899999999865 688999999999888 9999999999999999995 5699999995 89999986
Q ss_pred -CCeeecccCCCCCCCcC-CHHHHHHHHHHhhCCCCcCCC
Q 032794 95 -NGHICLDILYDSWSPAM-TVSSVCISILSMLSSSTVKVC 132 (133)
Q Consensus 95 -~G~vcl~~l~~~W~p~~-~i~~vl~~i~~ll~~p~~~~~ 132 (133)
++.+|++-.-..|+-.- .|.+||..+|..+.+|+...|
T Consensus 100 ~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~ 139 (258)
T KOG0429|consen 100 KSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSID 139 (258)
T ss_pred CccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchh
Confidence 99999986655697766 799999999999999986543
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.1e-14 Score=95.67 Aligned_cols=109 Identities=25% Similarity=0.359 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhCCCCC-cEEe--eCCC--ceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCcc
Q 032794 17 SNRLQKELVEWQVNPPAG-FKHK--VTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91 (133)
Q Consensus 17 ~~Rl~~El~~l~~~~~~~-~~~~--~~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpn 91 (133)
.-||.+|+.+-++.--++ ++.. +++| +..|...|.||+.|+||+.+|.+.|..-++||..||+|+|.| ++--..
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~t-kinm~g 85 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGT-KINMNG 85 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEE-Eeeecc
Confidence 347888888876654333 3332 3344 678999999999999999999999999999999999999999 776666
Q ss_pred ccC-CCeeecccC--CCCCCCcCCHHHHHHHHHHhhCC
Q 032794 92 IYS-NGHICLDIL--YDSWSPAMTVSSVCISILSMLSS 126 (133)
Q Consensus 92 v~~-~G~vcl~~l--~~~W~p~~~i~~vl~~i~~ll~~ 126 (133)
|.. +|.|.-..+ ..+|.-.|+++.||..++.+|..
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 654 777765433 26899999999999999866543
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.4e-10 Score=76.52 Aligned_cols=69 Identities=23% Similarity=0.450 Sum_probs=59.3
Q ss_pred EEEEEEcCCCCCCCCCeEEEecCCCcCccccCCCeeecccCC-CCCCCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-DSWSPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 63 f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~~~G~vcl~~l~-~~W~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
..+.+.|+++||+.||.++...|.+--..|-.+|.||+.+|. ++|+.+++++.++++|-+.+.....+.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri 82 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARI 82 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeE
Confidence 457788999999999999999985555557789999999995 689999999999999999988776554
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.74 E-value=2.2e-08 Score=68.86 Aligned_cols=68 Identities=28% Similarity=0.698 Sum_probs=60.9
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecCCC--cCccccCCCeeec---ccCCCCCCCcCCHHHHHHHHHHhhCC
Q 032794 59 ANETFELQVDFPEHYPMEAPQVIFLPPAP--LHPHIYSNGHICL---DILYDSWSPAMTVSSVCISILSMLSS 126 (133)
Q Consensus 59 ~gg~f~~~i~fp~~YP~~pP~v~f~tp~i--~Hpnv~~~G~vcl---~~l~~~W~p~~~i~~vl~~i~~ll~~ 126 (133)
.|+.+.+.|.||++||..||.|....+.- +=|||+.+|.+|+ ....+.|.|.-.+.++|.+.+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999887532 6899999999999 77788999999999999999888864
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.43 E-value=8.9e-07 Score=60.00 Aligned_cols=84 Identities=23% Similarity=0.482 Sum_probs=54.4
Q ss_pred eeEEEEEECCCCCCCCCCEEE--EEEEcCCCCCCCCCeEEEecC---CC-cCccccCCCeeecccCCCCCCC-cCCHHHH
Q 032794 44 QRWIIEVNGAPGTLYANETFE--LQVDFPEHYPMEAPQVIFLPP---AP-LHPHIYSNGHICLDILYDSWSP-AMTVSSV 116 (133)
Q Consensus 44 ~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~tp---~i-~Hpnv~~~G~vcl~~l~~~W~p-~~~i~~v 116 (133)
.+-.+.+.|--.=.|+|..|. +.|-+|.+||..||.+...-. .| -+.+||.+|+|.+..|.+ |.+ ..+|.++
T Consensus 29 ~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~-W~~~~s~L~~l 107 (121)
T PF05743_consen 29 SKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQN-WNPPSSNLVDL 107 (121)
T ss_dssp EEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT---TTTS-HHHH
T ss_pred hheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhcc-CCCCCCCHHHH
Confidence 333345555222258888885 667789999999999966422 11 244999999999988865 777 7799999
Q ss_pred HHHHHHhhCCCC
Q 032794 117 CISILSMLSSST 128 (133)
Q Consensus 117 l~~i~~ll~~p~ 128 (133)
+..++..|.+..
T Consensus 108 v~~l~~~F~~~p 119 (121)
T PF05743_consen 108 VQELQAVFSEEP 119 (121)
T ss_dssp HHHHHHCCCHS-
T ss_pred HHHHHHHHhHcC
Confidence 999988876543
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.36 E-value=3.9e-07 Score=62.64 Aligned_cols=99 Identities=21% Similarity=0.390 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcEEeeCCCceeEEEEEECCCCCCCCC----------CEEEEEEEcCCCCCCCCCeEEEe
Q 032794 14 KIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN----------ETFELQVDFPEHYPMEAPQVIFL 83 (133)
Q Consensus 14 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g----------g~f~~~i~fp~~YP~~pP~v~f~ 83 (133)
..+..||+.||+.|-+ .+... .++-..|.-+=..++||-|.| ..|.+++.+|..||..||.|..-
T Consensus 23 ~~W~~RLKEEy~aLI~----Yv~~n-K~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lP 97 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIK----YVENN-KENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALP 97 (161)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHH-HHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-G
T ss_pred HHHHHHHHHHHHHHHH----HHHhc-ccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecc
Confidence 6789999999999764 11111 111133433334466666665 34667777899999999999875
Q ss_pred cCCCcCccccCCCeeecccC----CCCCCCcCCHHHHH
Q 032794 84 PPAPLHPHIYSNGHICLDIL----YDSWSPAMTVSSVC 117 (133)
Q Consensus 84 tp~i~Hpnv~~~G~vcl~~l----~~~W~p~~~i~~vl 117 (133)
.-..-..-.|.+|+||++.- +..=.|.++|.+.|
T Consensus 98 eLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 98 ELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp GGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred ccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 42223444678999999874 23447888888765
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00018 Score=56.16 Aligned_cols=79 Identities=20% Similarity=0.454 Sum_probs=60.3
Q ss_pred EECCCCCCCCCCEEEE--EEEcCCCCCCCCCeEEEecC-----CCcCccccCCCeeecccCCCCCC-CcCCHHHHHHHHH
Q 032794 50 VNGAPGTLYANETFEL--QVDFPEHYPMEAPQVIFLPP-----APLHPHIYSNGHICLDILYDSWS-PAMTVSSVCISIL 121 (133)
Q Consensus 50 i~gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~tp-----~i~Hpnv~~~G~vcl~~l~~~W~-p~~~i~~vl~~i~ 121 (133)
+.|---.+|.|-.|.+ .|-+.+.||..||.+.. .| .-.|-+|+.+|+|.|..|.+ |. |+.+|..++..+.
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~V-nPT~~M~ik~~~hVd~nG~V~LPYLh~-W~~pssdLv~Liq~l~ 132 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYV-NPTSTMIIKVHEHVDPNGKVYLPYLHN-WDPPSSDLVGLIQELI 132 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEe-cCCchhhhHHhhccCCCCeEechhhcc-CCCccchHHHHHHHHH
Confidence 3343335788888775 55579999999998844 34 11489999999999999976 65 4668999999999
Q ss_pred HhhCCCCcC
Q 032794 122 SMLSSSTVK 130 (133)
Q Consensus 122 ~ll~~p~~~ 130 (133)
+.|.++.+.
T Consensus 133 a~f~~~pP~ 141 (365)
T KOG2391|consen 133 AAFSEDPPV 141 (365)
T ss_pred HHhcCCCcc
Confidence 999887664
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00012 Score=49.90 Aligned_cols=100 Identities=21% Similarity=0.422 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCcEEeeCCCceeEEEEEECCCCCCCCC----------CEEEEEEEcCCCCCCCCCeEEE
Q 032794 13 SKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN----------ETFELQVDFPEHYPMEAPQVIF 82 (133)
Q Consensus 13 ~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g----------g~f~~~i~fp~~YP~~pP~v~f 82 (133)
-..+..||+.|++.|-+- +.. ..++-..|.-+-..++||-|-| ..|.+++.+|-.||..+|.+..
T Consensus 25 ~~~wvqrlkeey~sli~y----vqn-nk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial 99 (167)
T KOG3357|consen 25 GDLWVQRLKEEYQSLIAY----VQN-NKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL 99 (167)
T ss_pred chHHHHHHHHHHHHHHHH----HHh-CcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence 456789999999998641 111 1222234544445688888877 3466777789999999999876
Q ss_pred ecCCCcCccccCCCeeeccc-CCCCC---CCcCCHHHHH
Q 032794 83 LPPAPLHPHIYSNGHICLDI-LYDSW---SPAMTVSSVC 117 (133)
Q Consensus 83 ~tp~i~Hpnv~~~G~vcl~~-l~~~W---~p~~~i~~vl 117 (133)
..-..-.--.+.+|+||+.- +..-| .|.++|.+.+
T Consensus 100 peldgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 100 PELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred cccCchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 43111223356899999953 23334 5666666543
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.89 E-value=0.0048 Score=40.17 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhCCCCCcEEeeCCCceeEEEEEEC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q 032794 17 SNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNG--APGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (133)
Q Consensus 17 ~~Rl~~El~~l~~~~~~~~~~~~~~~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp 85 (133)
..+...|+..|+.-=...+......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|...++
T Consensus 3 ~e~~~~EieaL~sIy~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDFIEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSESSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCccccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 456788898888743322211123344556666632 233344566899999999999999999998884
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.61 E-value=0.033 Score=37.75 Aligned_cols=87 Identities=21% Similarity=0.531 Sum_probs=58.5
Q ss_pred CcEEe-eCCCceeEEEEEEC---CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCccccCCCee--ecccC----
Q 032794 34 GFKHK-VTDNLQRWIIEVNG---APGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHI--CLDIL---- 103 (133)
Q Consensus 34 ~~~~~-~~~~~~~w~~~i~g---p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~~~G~v--cl~~l---- 103 (133)
|+..+ ..+.-..|.+ |.| |+| .|.+..-.+-|.+|..||..+|-.-+..|... .-.+|.+ |-+..
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G-~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~---~~~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEG-KYNHNEVDILILIPPGYPDAPLDMFYVYPPLK---LADGGPIPNAAEVTQTFD 87 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCC-ccCccceEEEEECCCCCCCCCCCcEEECCceE---ccCCCcCCchhcchhhcC
Confidence 55555 3444455644 777 554 79999999999999999999997777776321 0112333 33222
Q ss_pred ----------CCCCCCcC-CHHHHHHHHHHhhC
Q 032794 104 ----------YDSWSPAM-TVSSVCISILSMLS 125 (133)
Q Consensus 104 ----------~~~W~p~~-~i~~vl~~i~~ll~ 125 (133)
...|.|.. +|.+.|..|...|.
T Consensus 88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 23689987 69999988887765
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.73 E-value=0.086 Score=33.85 Aligned_cols=27 Identities=41% Similarity=0.710 Sum_probs=23.3
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecC
Q 032794 59 ANETFELQVDFPEHYPMEAPQVIFLPP 85 (133)
Q Consensus 59 ~gg~f~~~i~fp~~YP~~pP~v~f~tp 85 (133)
..-.+.+.+.||++||..+|.|.+.++
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999998874
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.93 E-value=0.049 Score=38.72 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=47.1
Q ss_pred EEEEcCCCCCCCCCeEEEecCCC--cCccccCC-----CeeecccCC-CCCCCcCCHHHHHHHHHHhhC
Q 032794 65 LQVDFPEHYPMEAPQVIFLPPAP--LHPHIYSN-----GHICLDILY-DSWSPAMTVSSVCISILSMLS 125 (133)
Q Consensus 65 ~~i~fp~~YP~~pP~v~f~tp~i--~Hpnv~~~-----G~vcl~~l~-~~W~p~~~i~~vl~~i~~ll~ 125 (133)
+.|.|+.+||..+|.|.++-..+ .+||+... ..+|+---. ..|.+..+++.+|..|..-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 67899999999999877665322 25777654 679985443 579999999999999987764
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=91.84 E-value=0.4 Score=37.19 Aligned_cols=89 Identities=20% Similarity=0.335 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcEEeeCCCceeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCcccc
Q 032794 14 KIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93 (133)
Q Consensus 14 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~ 93 (133)
.....+|.+|+.++..+.. +.+..++++...++.+. .. .....++|.++.+||.++|.+...-| ..
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i~~d~~ls~i~l~~~--D~----~R~H~l~l~l~~~yp~~~p~~~~~~P--~~---- 163 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQIQFDDDLSTIKLKIF--DS----SRQHYLELKLPSNYPFEPPSCSLDLP--IP---- 163 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEEEE-CCCSEEEEEEE--TT----CEEEEEEEETTTTTTTSEEEECS-TT--S-----
T ss_pred cHHHHHHHHHHHHhccccc--eEEecCCCccEEEEEEE--cC----CceEEEEEEECCCCCCCCceeeCCCC--cc----
Confidence 4456788889998875433 44445778887777777 21 25678999999999999996543333 11
Q ss_pred CCCeeecccCCCCCCC-cCCHHHHHHHHHHhhC
Q 032794 94 SNGHICLDILYDSWSP-AMTVSSVCISILSMLS 125 (133)
Q Consensus 94 ~~G~vcl~~l~~~W~p-~~~i~~vl~~i~~ll~ 125 (133)
+...|.+ ..++.+|+.+.+..|.
T Consensus 164 ---------~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 164 ---------FSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp ---------HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ---------hhhhhcccccCHHHHHHHHHHHHH
Confidence 1235888 6789999888777654
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=85.54 E-value=3.4 Score=30.65 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=22.6
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecCCCcCc
Q 032794 62 TFELQVDFPEHYPMEAPQVIFLPPAPLHP 90 (133)
Q Consensus 62 ~f~~~i~fp~~YP~~pP~v~f~tp~i~Hp 90 (133)
.+.+.+.++.+||..+|-|.+..+.-++.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~~~~~~~~ 78 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAFENENLED 78 (215)
T ss_pred cEEEEEEccCCCCCCCcceeccccccccH
Confidence 78899999999999999995555433433
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.85 E-value=9.1 Score=33.77 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhCCCCCcEEe-eCCCceeEEEEEECCCCCCCCCCE-EEEEEEcCCCCCCC-CCeEEEecC
Q 032794 18 NRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANET-FELQVDFPEHYPME-APQVIFLPP 85 (133)
Q Consensus 18 ~Rl~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~-f~~~i~fp~~YP~~-pP~v~f~tp 85 (133)
.-|.+|+.-|-.. ..++.++ .+-.-..-.+.+.+|-- +-.|.+ .++.|.||.+||.+ +|.+.|..|
T Consensus 423 QnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4455666555321 2233333 11122445677777654 334444 47899999999995 589999875
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=72.21 E-value=6.2 Score=31.26 Aligned_cols=28 Identities=21% Similarity=0.566 Sum_probs=24.6
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEecCCCcC
Q 032794 60 NETFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (133)
Q Consensus 60 gg~f~~~i~fp~~YP~~pP~v~f~tp~i~H 89 (133)
+-.|-+.|.+|..||...|.++|.+ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS--~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS--VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe--ecc
Confidence 4558888999999999999999998 588
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=71.15 E-value=7.3 Score=26.90 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCEEEEEEEcCCCCC-CCCCeEEEec
Q 032794 60 NETFELQVDFPEHYP-MEAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP-~~pP~v~f~t 84 (133)
.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 488999999999999 9999999875
No 40
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=70.67 E-value=18 Score=28.76 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=42.3
Q ss_pred CCCCCEEEEEEEcCCCCCCCCCeEEEecCCCcCccccCCCeeecccCCCCCCCcC--CHHHHHHHHHH
Q 032794 57 LYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAM--TVSSVCISILS 122 (133)
Q Consensus 57 py~gg~f~~~i~fp~~YP~~pP~v~f~tp~i~Hpnv~~~G~vcl~~l~~~W~p~~--~i~~vl~~i~~ 122 (133)
||.|...+-+|.|...||..||-+.|..-.-|+|-... +..| .+|.+.- ++..++..++.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L-~~Wd~~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL-VNWDPSDPNCLLNLISELRQ 122 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh-hcCCCCCchHHHHHHHHHHH
Confidence 68999999999999999999999999742348874321 1222 3687655 46666666554
No 41
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=70.49 E-value=7.4 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=23.0
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEec
Q 032794 60 NETFELQVDFPEHYPMEAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP~~pP~v~f~t 84 (133)
.|.|.|.=.+|--||..+|.|+|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4899999999999999999999975
No 42
>smart00340 HALZ homeobox associated leucin zipper.
Probab=65.40 E-value=6 Score=21.72 Aligned_cols=15 Identities=40% Similarity=0.472 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhC
Q 032794 16 ASNRLQKELVEWQVN 30 (133)
Q Consensus 16 ~~~Rl~~El~~l~~~ 30 (133)
-.+||++|+++|...
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 358999999999864
No 43
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=62.28 E-value=14 Score=26.04 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=22.6
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeEEEec
Q 032794 60 NETFELQVDFPEHYP-----MEAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP-----~~pP~v~f~t 84 (133)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999999875
No 44
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.30 E-value=5.8 Score=28.96 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=25.6
Q ss_pred CCeeecccCCCCCCCcCCHHHHHHHHHHhhC
Q 032794 95 NGHICLDILYDSWSPAMTVSSVCISILSMLS 125 (133)
Q Consensus 95 ~G~vcl~~l~~~W~p~~~i~~vl~~i~~ll~ 125 (133)
.+..|+++|...|+|.+|++..+.-++.++.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999988776665543
No 45
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=53.21 E-value=14 Score=31.35 Aligned_cols=30 Identities=27% Similarity=0.674 Sum_probs=25.3
Q ss_pred CCCCCCEEEEEEEcCCCCCC---CCCeEEEecCC
Q 032794 56 TLYANETFELQVDFPEHYPM---EAPQVIFLPPA 86 (133)
Q Consensus 56 tpy~gg~f~~~i~fp~~YP~---~pP~v~f~tp~ 86 (133)
+||.-|.|.+ +.+|++||+ +-|.+.|+||.
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~TpT 280 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPT 280 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecch
Confidence 4788899985 668999998 56999999984
No 46
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=51.32 E-value=25 Score=25.67 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeEEEec
Q 032794 60 NETFELQVDFPEHYPM-----EAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP~-----~pP~v~f~t 84 (133)
.|.|.|+-..|-.||. .||.|.|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 3889999999999998 889888864
No 47
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=47.94 E-value=52 Score=21.03 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=21.4
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeEEEecC
Q 032794 58 YANETFELQVDFPEHYPMEAPQVIFLPP 85 (133)
Q Consensus 58 y~gg~f~~~i~fp~~YP~~pP~v~f~tp 85 (133)
-||..+.|.-.-|..|| .|.|.+.++
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777888888899999 589999874
No 48
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=47.63 E-value=31 Score=24.97 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.9
Q ss_pred CEEEEEEEcCCCCCC-----CCCeEEEec
Q 032794 61 ETFELQVDFPEHYPM-----EAPQVIFLP 84 (133)
Q Consensus 61 g~f~~~i~fp~~YP~-----~pP~v~f~t 84 (133)
|.|.|.-.+|--||. .||.|+|.-
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~V 121 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVWV 121 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 889999999999995 888888764
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=47.09 E-value=29 Score=27.39 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.0
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEecCC
Q 032794 61 ETFELQVDFPEHYPMEAPQVIFLPPA 86 (133)
Q Consensus 61 g~f~~~i~fp~~YP~~pP~v~f~tp~ 86 (133)
-.+.+.+..+..||...|+|+...|+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nPR 70 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNPR 70 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCCC
Confidence 45778899999999999999998885
No 50
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=45.55 E-value=41 Score=23.91 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=11.8
Q ss_pred ccccCCCeeecccC
Q 032794 90 PHIYSNGHICLDIL 103 (133)
Q Consensus 90 pnv~~~G~vcl~~l 103 (133)
+||+.+|+||+.-.
T Consensus 98 ~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 98 FNVYSNGSVCWGNN 111 (175)
T ss_pred cccCCCCcEeeCCC
Confidence 48999999999763
No 51
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=44.79 E-value=28 Score=25.86 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=44.0
Q ss_pred CCCCeEEEecCCCcCccccC--CCeeecccCCCCC--CCcCCHHHHHHHHHHhhCCCCcCC
Q 032794 75 MEAPQVIFLPPAPLHPHIYS--NGHICLDILYDSW--SPAMTVSSVCISILSMLSSSTVKV 131 (133)
Q Consensus 75 ~~pP~v~f~tp~i~Hpnv~~--~G~vcl~~l~~~W--~p~~~i~~vl~~i~~ll~~p~~~~ 131 (133)
+.||-|.|-. +.|...|+- .|-|-.++-+.+| .|.-.+.+-|..|..+|-.|+.++
T Consensus 167 yrppdvlfga-kly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGA-KLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeee-ehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 4789999998 789888874 6666556666666 678889999999999998887664
No 52
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=43.47 E-value=38 Score=25.48 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=11.7
Q ss_pred ccccCCCeeecccC
Q 032794 90 PHIYSNGHICLDIL 103 (133)
Q Consensus 90 pnv~~~G~vcl~~l 103 (133)
.||+.+|+||+.-.
T Consensus 139 fNV~~~G~VC~G~~ 152 (228)
T TIGR03737 139 FNVWSNGEICAGNA 152 (228)
T ss_pred CccCCCCeEeeCCC
Confidence 48999999999654
No 53
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=40.66 E-value=91 Score=19.47 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=27.9
Q ss_pred eeEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q 032794 44 QRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (133)
Q Consensus 44 ~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~tp 85 (133)
.+|.+-|.|+.+..-..-+=++.+.+.+.|+. |...+..|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 57999999988765566677788889999886 66555554
No 54
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=36.93 E-value=53 Score=25.51 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.5
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 032794 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (133)
.|.|.|.=.+|.-|| ..||.|.|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 489999999999997 6889998864
No 55
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=34.70 E-value=13 Score=19.09 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=9.7
Q ss_pred cCccccCCCe-eecccC
Q 032794 88 LHPHIYSNGH-ICLDIL 103 (133)
Q Consensus 88 ~Hpnv~~~G~-vcl~~l 103 (133)
|||.+..+|+ .|....
T Consensus 3 yHPg~~~~g~W~CC~q~ 19 (32)
T PF00779_consen 3 YHPGAWRGGKWLCCKQT 19 (32)
T ss_dssp E-SS-EETTCESSSS-S
T ss_pred cCCCcccCCcCcCCCCc
Confidence 8999998777 665443
No 56
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=34.62 E-value=61 Score=25.06 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=21.6
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 032794 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (133)
.|.|.|.-..|.-|| ..||.|.|.-
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 488999999999999 5889998864
No 57
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=33.91 E-value=14 Score=32.81 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=0.0
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEec
Q 032794 61 ETFELQVDFPEHYPMEAPQVIFLP 84 (133)
Q Consensus 61 g~f~~~i~fp~~YP~~pP~v~f~t 84 (133)
.+=-++|.+|.|||..+|.+.+.+
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~ 737 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDR 737 (799)
T ss_dssp ------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccH
Confidence 344578999999999999987754
No 58
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=33.52 E-value=67 Score=24.93 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 032794 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (133)
.|.|.|.-.+|..|| ..||.|.|.-
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~V 226 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLKV 226 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEEE
Confidence 488999999998887 6888888864
No 59
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=33.10 E-value=1.1e+02 Score=23.54 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=25.1
Q ss_pred eeEEEEEECCCCCCCCC---CEEEEEEEc-----CCCCCCCCCeEEEecC
Q 032794 44 QRWIIEVNGAPGTLYAN---ETFELQVDF-----PEHYPMEAPQVIFLPP 85 (133)
Q Consensus 44 ~~w~~~i~gp~~tpy~g---g~f~~~i~f-----p~~YP~~pP~v~f~tp 85 (133)
.-|++.......-..+| ..|+..+++ ..|-||+||+|+.++.
T Consensus 103 ~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK 152 (276)
T PF00845_consen 103 IPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSK 152 (276)
T ss_pred CCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeec
Confidence 34555555322222233 334555555 4789999999999983
No 60
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=32.07 E-value=74 Score=23.73 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCEEEEEEEcCCCCCC-------CCCeEEEec
Q 032794 60 NETFELQVDFPEHYPM-------EAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP~-------~pP~v~f~t 84 (133)
.|.|.|.-..|--||. .||.|.|.-
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~V 153 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFSL 153 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEEE
Confidence 4899999999999964 899998853
No 61
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=31.96 E-value=72 Score=24.75 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=21.3
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 032794 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (133)
.|.|.|.=..|.-|| ..||.|.|.-
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 488999999999996 6788888864
No 62
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=31.27 E-value=35 Score=20.11 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhh
Q 032794 17 SNRLQKELVEWQV 29 (133)
Q Consensus 17 ~~Rl~~El~~l~~ 29 (133)
.+||++||+++.-
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4688999988864
No 63
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=30.73 E-value=80 Score=23.55 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.1
Q ss_pred CCEEEEEEEcCCCCCC-------CCCeEEEe
Q 032794 60 NETFELQVDFPEHYPM-------EAPQVIFL 83 (133)
Q Consensus 60 gg~f~~~i~fp~~YP~-------~pP~v~f~ 83 (133)
.|.|.|.=.+|--||. .||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4899999999999975 89999885
No 64
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=29.95 E-value=65 Score=22.14 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=21.1
Q ss_pred eCCCceeEEEEEECCCCCCCC-CCEEEEEEEc
Q 032794 39 VTDNLQRWIIEVNGAPGTLYA-NETFELQVDF 69 (133)
Q Consensus 39 ~~~~~~~w~~~i~gp~~tpy~-gg~f~~~i~f 69 (133)
..+|...|.|++.|+.||+.. ...|-+.+.|
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 456777788999999988774 4444444443
No 65
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=28.63 E-value=94 Score=23.61 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=20.9
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 032794 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (133)
.|.|.|.=..|.-|| ..||.|.|.-
T Consensus 150 ~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~V 192 (246)
T TIGR02465 150 DGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYKV 192 (246)
T ss_pred CCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEEE
Confidence 489999999999997 4788888864
No 66
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=28.22 E-value=59 Score=18.99 Aligned_cols=18 Identities=11% Similarity=0.422 Sum_probs=11.1
Q ss_pred CCCCcCCHHHHHHHHHHh
Q 032794 106 SWSPAMTVSSVCISILSM 123 (133)
Q Consensus 106 ~W~p~~~i~~vl~~i~~l 123 (133)
+|.|.++|++++......
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 899999999999776443
No 67
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=26.97 E-value=48 Score=20.55 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 032794 15 IASNRLQKELVEW 27 (133)
Q Consensus 15 ~~~~Rl~~El~~l 27 (133)
+-.|||++||+-|
T Consensus 59 SQLKRiQRdlrGL 71 (76)
T PF08203_consen 59 SQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCCC
Confidence 4479999999876
No 68
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=24.35 E-value=38 Score=23.46 Aligned_cols=15 Identities=40% Similarity=0.795 Sum_probs=11.8
Q ss_pred EEEEcCCCCCCCCCe
Q 032794 65 LQVDFPEHYPMEAPQ 79 (133)
Q Consensus 65 ~~i~fp~~YP~~pP~ 79 (133)
-.-.+|.|||+.+|.
T Consensus 106 ~KW~LP~dYPMvAPn 120 (148)
T COG4957 106 AKWGLPPDYPMVAPN 120 (148)
T ss_pred HhcCCCCCCCccchH
Confidence 444589999999885
No 69
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=23.90 E-value=1.5e+02 Score=23.62 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=28.3
Q ss_pred eeEEEEEECCCCC-CCCCCEEEEEEE---cCCCCCCCCCeEEEec
Q 032794 44 QRWIIEVNGAPGT-LYANETFELQVD---FPEHYPMEAPQVIFLP 84 (133)
Q Consensus 44 ~~w~~~i~gp~~t-py~gg~f~~~i~---fp~~YP~~pP~v~f~t 84 (133)
.+|+..+.|-+++ -|++|.+++.+. |-.-|- +.|+|||-.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~q-R~PriRfG~ 240 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQ-RGPRIRFGM 240 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccccc-cCCceEeeE
Confidence 3688999996654 788998887776 333333 456999865
No 70
>PRK11700 hypothetical protein; Provisional
Probab=23.59 E-value=3e+02 Score=20.10 Aligned_cols=71 Identities=15% Similarity=0.339 Sum_probs=43.6
Q ss_pred CceeEEEEEE---CCCCCCC-CCCEEEEEEEcCC--------------CCCCCCC--eEEEecC-----CCcCcccc-CC
Q 032794 42 NLQRWIIEVN---GAPGTLY-ANETFELQVDFPE--------------HYPMEAP--QVIFLPP-----APLHPHIY-SN 95 (133)
Q Consensus 42 ~~~~w~~~i~---gp~~tpy-~gg~f~~~i~fp~--------------~YP~~pP--~v~f~tp-----~i~Hpnv~-~~ 95 (133)
....|.+-+. =|.+.-| .-|+=++++++|- +.+..++ +|++.+| |.-+|-|. .+
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 3445544433 3555555 5688899999883 3444555 4556566 44567674 59
Q ss_pred CeeecccCCCCCCCcCCHHHHHH
Q 032794 96 GHICLDILYDSWSPAMTVSSVCI 118 (133)
Q Consensus 96 G~vcl~~l~~~W~p~~~i~~vl~ 118 (133)
|.+|+..- -++|+.|+.
T Consensus 167 ~~vcIK~H------P~slk~IV~ 183 (187)
T PRK11700 167 GGICIKFH------PHSIKEIVA 183 (187)
T ss_pred CCEEEEEc------CccHHHHHH
Confidence 99999653 236666654
No 71
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=23.21 E-value=1.3e+02 Score=22.95 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=20.6
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 032794 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (133)
.|.|.|.-..|.-|| ..||.|.|.-
T Consensus 156 ~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 198 (256)
T cd03458 156 DGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFMV 198 (256)
T ss_pred CCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEEE
Confidence 388999999999886 5788888864
No 72
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=22.81 E-value=1.3e+02 Score=16.26 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=15.3
Q ss_pred ccccHHHHHHHHHHHHHHhhC
Q 032794 10 KALSKIASNRLQKELVEWQVN 30 (133)
Q Consensus 10 ~~~~~~~~~Rl~~El~~l~~~ 30 (133)
...++.+.|-|..|+..+.++
T Consensus 22 Pvp~~~alkELIeELvNITqn 42 (43)
T PF03487_consen 22 PVPSSTALKELIEELVNITQN 42 (43)
T ss_dssp -S-HHHHHHHHHHHHHHHHHS
T ss_pred CCCchHHHHHHHHHHHhhccC
Confidence 334667899999999988764
No 73
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=22.18 E-value=55 Score=21.69 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=16.0
Q ss_pred CCCeeecccCCCCCCCcCCHH
Q 032794 94 SNGHICLDILYDSWSPAMTVS 114 (133)
Q Consensus 94 ~~G~vcl~~l~~~W~p~~~i~ 114 (133)
..|.+|.=.+...|+|.+++.
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEE
Confidence 456678878888999988754
No 74
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=21.47 E-value=46 Score=17.50 Aligned_cols=16 Identities=25% Similarity=0.762 Sum_probs=12.0
Q ss_pred cCccccCCCe-eecccC
Q 032794 88 LHPHIYSNGH-ICLDIL 103 (133)
Q Consensus 88 ~Hpnv~~~G~-vcl~~l 103 (133)
|||.+..+|+ .|....
T Consensus 8 yHP~~~~~G~W~CC~q~ 24 (36)
T smart00107 8 YHPSFWVDGKWLCCQQS 24 (36)
T ss_pred cCCCceeCCeEccCCCc
Confidence 9999998777 665443
No 75
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=20.50 E-value=1.6e+02 Score=22.38 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=20.5
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 032794 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (133)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (133)
.|.|.|.=..|.-|| ..||.|.|.-
T Consensus 151 ~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 193 (247)
T cd03462 151 DGRYEVRTTVPVPYQIPNDGPTGALLEAMGGHSWRPAHVHFKV 193 (247)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhcccCCCCCCeEEEEE
Confidence 488999999998885 5788888864
No 76
>PF06468 Spond_N: Spondin_N; InterPro: IPR009465 This conserved region is found in the N-terminal half of several Spondin proteins []. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells [].; PDB: 3D34_A 3Q13_A.
Probab=20.14 E-value=1e+02 Score=22.42 Aligned_cols=23 Identities=35% Similarity=0.826 Sum_probs=14.0
Q ss_pred EEEEEEE-------cCCCCCCCCCeEEEec
Q 032794 62 TFELQVD-------FPEHYPMEAPQVIFLP 84 (133)
Q Consensus 62 ~f~~~i~-------fp~~YP~~pP~v~f~t 84 (133)
.|++.+. +|++||...|.-+|..
T Consensus 3 ~Y~~~f~g~Ws~~~hpk~yP~~~~~~~fSp 32 (196)
T PF06468_consen 3 TYEVTFEGIWSRNTHPKDYPSNRPPAHFSP 32 (196)
T ss_dssp EEEEEEEEE-STTTS-TT--CTSSCSEEEE
T ss_pred eEEEEEEEEECCccCcccccccccccccch
Confidence 4666665 8999999877777664
Done!