BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032795
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 220 bits (560), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 109/112 (97%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA GNK+INAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
FEIWDTAGQERYHSLAPMYYRGAAAAIIV+D+TNQASFERAKKWVQELQAQG
Sbjct: 63 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG 114
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 175 bits (444), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 91/108 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA 109
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 175 bits (443), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 91/108 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA 108
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 175 bits (443), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 91/108 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA 108
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 174 bits (442), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 91/108 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA 108
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 174 bits (441), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 91/108 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA 108
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 174 bits (441), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 91/108 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA 108
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 91/108 (84%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA 108
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 172 bits (436), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 90/108 (83%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
DTAGQERYHSLAP YYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA 109
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/107 (75%), Positives = 89/107 (83%)
Query: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
NK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWD
Sbjct: 1 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
TAG ERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q
Sbjct: 61 TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA 107
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 169 bits (428), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 88/101 (87%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEIWDTAGQER
Sbjct: 10 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
YHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q
Sbjct: 70 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQA 110
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 168 bits (426), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 87/101 (86%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAGQER
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
YHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA 105
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 165 bits (418), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 86/101 (85%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTI AAF +QT+ ++D TVKFEIWDTAGQER
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
YHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA 107
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 165 bits (418), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 86/101 (85%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAG ER
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
YHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA 107
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 76/100 (76%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSS+VLRFV F E +E TIGAAF +Q + +N+ TVKFEIWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
+ SLAP YYR A AA++VYD+T SF +A+ WV+EL Q
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ 104
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 74/101 (73%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
+HSLAPMYYRG+AAA+IVYDIT Q SF KKWV+EL+ G
Sbjct: 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG 125
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 72/101 (71%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG 107
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 71/101 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS++ RFV+ F TIGA+F ++T+ + KF IWDTAG ER
Sbjct: 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G
Sbjct: 68 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG 108
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 76/105 (72%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G++ + K+VLLG+ GK+SLVLR+ + +F + +T+GA+F ++ L + V IW
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
DTAGQER+H+L P+YYR + AI+VYDIT++ SF++ K WV+EL+
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR 105
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 76/109 (69%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
+ G++ + K+VLLG+ GK+SLVLR+ + +F + +T+ A+F ++ L + V
Sbjct: 11 LVPRGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVN 70
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
IWDTAGQER+H+L P+YYR + AI+VYDIT++ SF++ K WV+EL+
Sbjct: 71 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR 119
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 69/98 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + + STIG F +T+++ + TVK +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRGA IIVYD+T++ SF+ K+W+QE+
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEID 108
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 75/105 (71%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G++ + K+VLLG+ GK+SLVLR+ + +F + +T+ A+F ++ L + V IW
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
DTAGQER+H+L P+YYR + AI+VYDIT++ SF++ K WV+EL+
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR 105
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 108 bits (271), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 68/97 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+S++ RF F +STIG F S+TL +++ V+ ++WDTAGQER
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+ SL P Y R +AAAI+VYDITN+ SFE KW+Q++
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDI 99
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 98
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 108 bits (270), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF K +F +STIG F ++TL + +K +IWDTAGQER
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A+IVYDI+ +S+E W+ EL+
Sbjct: 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELR 112
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 105
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 124
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 105
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 115
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 107
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 132
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 67/98 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GK+ L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 115
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 70/100 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D T++ ++WDTAGQER
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
+ SL P Y R +AAA++VYDITN SF++ KW+ +++ +
Sbjct: 68 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE 107
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%)
Query: 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72
L+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
++ YYRGA I+VYD+T+Q SF K+W+QE+
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 97
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 67/98 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRGA I+VYD+T+Q S+ K+W+QE+
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEID 108
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 67/98 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRGA I+VYD+T+Q S+ K+W+QE+
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEID 108
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 69/107 (64%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
DTAGQER+ SL P Y R + A++VYDITN SF + KW+ +++ +
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE 115
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE 70
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ + N+ +K +IWDTAGQE
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
RY ++ YYRGA A++VYDIT + SFE +KW++EL+
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELR 107
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 70/98 (71%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAGQER
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYDI ++E ++W++EL+
Sbjct: 82 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 119
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 68/100 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
+ SL P Y R + A++VYDITN SF++ KW+ +++ +
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE 103
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 68/100 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
+ SL P Y R + A++VYDITN SF++ KW+ +++ +
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE 102
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 70/98 (71%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAGQER
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYDI ++E ++W++EL+
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 128
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 69/98 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAGQER
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y + YYRGA A++VYDI ++E ++W++EL+
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 104
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 71/107 (66%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D T++ ++W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
DTAG ER+ SL P Y R +AAA++VYDITN SF++ KW+ +++ +
Sbjct: 68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE 114
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 69/107 (64%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 1 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
DTAG ER+ SL P Y R + A++VYDITN SF++ KW+ +++ +
Sbjct: 61 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE 107
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 102 bits (254), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 65/98 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ G GKS L+LRF + STIG F +T+ ++ TVK +IWDTAGQER
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRG+ IIVYD+T+Q SF K W+QE+
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID 107
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 102 bits (254), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 65/98 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ G GKS L+LRF + STIG F +T+ ++ TVK +IWDTAGQER
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRG+ IIVYD+T+Q SF K W+QE+
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID 107
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 69/107 (64%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 11 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
DTAG ER+ SL P Y R + A++VYDITN SF++ KW+ +++ +
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE 117
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 69/98 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYDI ++E ++W++EL+
Sbjct: 70 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 107
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 66/98 (67%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF +F +STIG F ++T+ V + +K +IWDTAG ER
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A+IVYDI+ +S+E W+ EL+
Sbjct: 72 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELR 109
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 69/98 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYDI ++E ++W++EL+
Sbjct: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 110
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 69/98 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYDI ++E ++W++EL+
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 128
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 102 bits (253), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 37/141 (26%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV----------------- 54
K VLLG+ GKSS+VLR K F E +TIGA+F + + +
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 55 --------------------NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN 94
N +KF+IWDTAGQERY S+ P+YYRGA AI+V+DI+N
Sbjct: 69 NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 95 QASFERAKKWVQELQAQGIHI 115
+ +RAK WV +L+ +I
Sbjct: 129 SNTLDRAKTWVNQLKISSNYI 149
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 102 bits (253), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 69/98 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA A++VYDI ++E ++W++EL+
Sbjct: 67 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 104
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 65/98 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ G GKS L+LRF + STIG F +T+ ++ TVK +IWDTAGQER
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYRG+ IIVYD+T+Q SF K W+QE+
Sbjct: 83 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID 120
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 65/98 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+G+ G GK+ LV RF +G F Q +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ S+ YYR A A I+ YDIT + SF +W++E++
Sbjct: 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE 125
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+++GD G GKSSL+LRF F +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLL 119
+ ++ YYRG I+VYD+T+ SF K+W+ E+ + +L
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 118
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 64/99 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G+ G GKSSL+LRF F +TIG F +T++V+ K IWDTAGQER
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
+ +L P YYRGA I+VYD+T + +F + W+ EL+
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET 115
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKF 61
++ KNI K+++LGD G GK+SL+ R+V ++ + ++TIGA F ++ + V+ D
Sbjct: 2 SSRKKNI-LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE 107
++WDTAGQER+ SL +YRGA ++VYD+TN +SFE K W E
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDE 106
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 98.6 bits (244), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 63/98 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD GK+ +V RF G F E Q STIG F +TL + VK +IWDTAGQER
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ ++ YYR A AI+ YDIT ++SF W+++++
Sbjct: 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR 128
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW 104
+ ++ YYRGA I+VYDIT++ +F K+W
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQW 97
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW 104
+ ++ YYRGA I+VYDIT++ +F K+W
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQW 97
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 64/93 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK ++WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW 104
+ ++ YYRGA I+VYD+T++ +F K+W
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQW 97
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 64/93 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK ++WDTAGQER
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW 104
+ ++ YYRGA I+VYD+T++ +F K+W
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQW 101
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 64/93 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK ++WDTAGQER
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW 104
+ ++ YYRGA I+VYD+T++ +F K+W
Sbjct: 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQW 114
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 65/100 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GK+ ++ RF + F STIG F +T+ ++ +K +IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
+ ++ YYRGA ++VYDITN+ SF+ + W++ ++
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH 107
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 65/100 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GK+ ++ RF + F STIG F +T+ ++ +K +IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
+ ++ YYRGA ++VYDITN+ SF+ + W++ ++
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH 109
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
K++L+GD G GK+ L++RF G F+ ST+G F ++ L V+ VK ++WDTAGQE
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLL 119
R+ S+ YYR A A +++YD+TN+ASF+ + W+ E+ H +L+
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM 120
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 66/97 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+G+ G GK++L+ RF + +F +TIG F ++T+ + A VK +IWDTAG ER
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
Y ++ YYRGA A++V+D+T ++ ++W++EL
Sbjct: 87 YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL 123
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 66/97 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+G+ G GK++L+ RF + +F +TIG F ++T+ + A VK +IWDTAG ER
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
Y ++ YYRGA A++V+D+T ++ ++W++EL
Sbjct: 72 YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL 108
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
WDTAGQER+ SL +YRGA ++V+D+T +F+ W E Q
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
WDTAGQER+ SL +YRGA ++V+D+T +F+ W E Q
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
WDTAGQER+ SL +YRGA ++V+D+T +F+ W E Q
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 62/96 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD G GKS L+L+F +F + TIG F ++ + ++ +K +IWDTAGQE
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE 107
+ S+ YYRGAA A++VYDIT + +F W+++
Sbjct: 72 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLED 107
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 92.4 bits (228), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 62/96 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD G GKS L+L+F +F + TIG F ++ + ++ +K +IWDTAGQE
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE 107
+ S+ YYRGAA A++VYDIT + +F W+++
Sbjct: 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED 118
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 63/96 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G G GKS L+ +F++ +F + TIG F S+ + V TVK +IWDTAGQER
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE 107
+ S+ YYRGAA A++VYDIT++ ++ W+ +
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTD 122
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
+ G+++ K++++GD GK+ L RF G+F + E+TIG F + + ++ +K
Sbjct: 11 LVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK 70
Query: 61 FEIWDTAGQERYH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
++WDTAGQER+ S+ YYR A + VYD+TN ASF W++E +
Sbjct: 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK 120
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++GD GK+ L RF G+F + E+TIG F + + ++ +K ++WDTAGQER
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 72 YH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ S+ YYR A + VYD TN ASF W++E +
Sbjct: 91 FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECK 129
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 67/108 (62%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+V++G+ GKSS++ R+ KG F + + TIG F + + VND V+ +WDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQSLL 119
+ ++ YYRGA A ++V+ T++ SFE W +++ A+ I + L
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTAL 114
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 66/109 (60%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
WDTAG ER+ SL +YRGA ++V+D+T +F+ W E Q
Sbjct: 62 WDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 61/99 (61%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G+ GK+S + R+ F ST+G F +T+ ND +K +IWDTAGQER
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
Y ++ YYRGA I++YDITN+ SF + W +++
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 105
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G+ G GKS L+ +F++ +F + TIG F S+ + V VK +IWDTAGQER
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE---LQAQGIHI 115
+ S+ YYRGAA A++VYDIT++ ++ W+ + L +Q I I
Sbjct: 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 118
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 62/95 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G G GK+SL+ RF F E +ST+G F +T+ + ++ +IWDTAGQER
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ 106
++S+ YYR A I+VYDIT + +F+ KW++
Sbjct: 88 FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMK 122
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G+ G GKS L+ +F++ +F + TIG F S+ + V VK +IWDTAGQER
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE---LQAQGIHI 115
+ S+ YYRGAA A++VYDIT++ ++ W+ + L +Q I I
Sbjct: 73 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 119
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 64/96 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD+G GKS L+ +F + +F+ TIG F ++ + V+ +K +IWDTAGQER
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE 107
+ ++ YYRGAA A++VYDIT ++++ W+ +
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD 112
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 64/106 (60%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN + KL+++G+ GK+S + R+ F ST+G F +T+ ++ VK +IW
Sbjct: 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
DTAGQERY ++ YYRGA I++YDITN+ SF + W +++
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT 123
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%), Gaps = 3/107 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G+ G GKS L+ +F++ +F + TIG F S+ + V VK +IWDTAG ER
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE---LQAQGIHI 115
+ S+ YYRGAA A++VYDIT++ ++ W+ + L +Q I I
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 116
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 60/98 (61%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ GK+S + R+ F ST+G F +T+ +D +K +IWDTAGQER
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ YYRGA +++YDI NQ SF + W +++
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIK 121
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 63/96 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD+G GKS L+ +F + +F+ TIG F ++ + V+ +K +IWDTAGQ R
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE 107
+ ++ YYRGAA A++VYDIT ++++ W+ +
Sbjct: 92 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD 127
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL GD GKSS ++R K +F E +T+G F +TL V+ ++WDTAGQER
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
+ S+A Y+R A +++YD+T + SF ++WV ++
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIE 127
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 62/102 (60%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K++ K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDT
Sbjct: 4 KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
AGQER+ SL +YRGA ++ + + ++ SFE W +E
Sbjct: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEF 105
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G+ GK+S + R+ F ST+G F +T+ ND +K +IWDTAG ER
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
Y ++ YYRGA I+ YDITN+ SF + W +++
Sbjct: 70 YRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKT 108
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
F +WDTAGQE+Y L YY A AII++D+T++ +++ W ++L
Sbjct: 61 FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L
Sbjct: 61 FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDTAGQER
Sbjct: 13 KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+ SL +YRG+ ++ + + + SF+ W +E
Sbjct: 73 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 109
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
F +WDTAGQE++ L YY A AII +D+T++ +++ W ++L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL 108
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDTAGQER
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+ SL +YRG+ ++ + + + SF+ W +E
Sbjct: 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 105
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDTAGQER
Sbjct: 11 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+ SL +YRG+ ++ + + + SF+ W +E
Sbjct: 71 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 107
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
A G + KLVL+GD G GK++ V R + G+F + +T+G N +KF
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+WDTAGQE++ L YY A AII++D+T++ +++ W ++L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 3 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
F +WDTAG E++ L YY A AII++D+T++ +++ W ++L
Sbjct: 63 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 110
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
F +WDTAG E++ L YY A AII++D+T++ +++ W ++L
Sbjct: 61 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 58/97 (59%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GK++ V R + G+F + +T+G N +KF +WDTAGQE+
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+ L YY A AII++D+T++ +++ W ++L
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 101
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV-KFEIWD 65
+ + K+ L+GD G GK++ + R + G+F + +T+GA T + V KF +WD
Sbjct: 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
TAGQE+ L +YY GA+ AI+ +D+T++ + + +WV+E QA
Sbjct: 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQA 112
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
A G + KLVL+GD G GK++ V R + G+ + +T+G N +KF
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+WDTAGQE++ L YY A AII++D+T++ +++ W ++L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G + KLVL+GD G GK++ V R + G+F + +T+G N +KF +W
Sbjct: 1 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
DTAG E++ L YY A AII++D+T++ +++ W ++L
Sbjct: 61 DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 104
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 59/97 (60%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GK++ V R + G+F + +TIG + N +KF++WDTAG E+
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+ L YY A AII++D+T++ +++ W ++L
Sbjct: 67 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 103
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 59/97 (60%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GK++ V R + G+F + +TIG + N +KF++WDTAG E+
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+ L YY A AII++D+T++ +++ W ++L
Sbjct: 66 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 102
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V +GD GK+ L++ + F T+ F S + VN ATV +WDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQED 68
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ--AQGIHI 115
Y+ L P+ YRGA I+ + + ++AS+E +KKW+ EL+ A G+ I
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI 115
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 59/97 (60%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GK++ V R + G+F + +TIG + N +KF++WDTAG E+
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+ L YY A AII++D+T++ +++ W ++L
Sbjct: 74 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 110
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V +GD GK+ +++ + F T+ F S + V+ TV +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ--AQGIHI 115
Y+ L P+ YRGA I+ + + ++AS+E AKKW+ EL+ A G+ I
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 113
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
A G +++ K+VL+GD G GK+SL++ F G F E T+ + L V V
Sbjct: 28 APPGVRSV--KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHL 84
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQ 109
IWDTAGQ+ Y L P++Y A+ ++ +D+T+ SF+ +W E+
Sbjct: 85 HIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN 133
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA------ 57
+G+ + KL+ LGD G GK++ + R+ +F +T+G F + + N
Sbjct: 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78
Query: 58 ----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
V ++WDTAGQER+ SL ++R A ++++D+T+Q SF + W+ +LQA
Sbjct: 79 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 135
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V +GD GK+ +++ + F T+ F S + V+ +TV +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ--AQGIHI 115
Y+ L P+ YRGA ++ + + ++AS+E KKW+ EL+ A GI I
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPI 113
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GDV GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 5 IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 63
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 64 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 105
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + + +
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
V ++WDTAG ER+ SL ++R A ++++D+T+Q SF + W+ +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 121
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ-----TLAVNDA 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + T + A
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 T-----VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
+ V ++WDTAG ER+ SL ++R A ++++D+T+Q SF + W+ +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 121
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + + +
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
V ++WDTAG ER+ SL ++R A ++ +D+T+Q SF + W +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQA 121
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ-----TLAVNDA 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + T + A
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 T-----VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
+ V ++WDTAG ER+ SL ++R A ++ +D+T+Q SF + W +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQA 121
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V +GD GK+ +++ + +F I F FS +AV+ V +WDTAGQ
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ 67
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQ 109
E Y L P+ YRGA ++ + + ++AS+E KKW+ EL+
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR 108
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G+ I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +W
Sbjct: 4 GSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALW 62
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
DTAGQE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 63 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 108
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 10/117 (8%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQF---------IEFQESTIGAAFFSQTLA 53
+ G+ + K + LGD G GK+S++ ++ G+F I+F+E + A
Sbjct: 4 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 54 VNDA-TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
V + ++WDTAG ER+ SL ++R A ++++D+TN+ SF + W+ +LQ
Sbjct: 64 VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG VG GKS+L ++FV+G F+E + TI ++ Q + V+ EI DTAG E+
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTEQ 65
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQS 117
+ ++ +Y + +VY IT Q++F +Q+L+ Q + ++
Sbjct: 66 FTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQILRVKD 107
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 124
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 124
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 106
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 5 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 63
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 64 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 105
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 65
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 66 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 107
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
M+ +I KLV++GD GK+ L++ KGQF E T+ + + + V+ V+
Sbjct: 1 MSQQVGNSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVE 59
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQ--AQGIHI 115
+WDTAGQE Y L P+ Y + +I + I S E +KW+ E+ QG+ I
Sbjct: 60 LALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPI 117
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 106
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 106
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K +F E T+ + + + V+ V+ +WDTAG
Sbjct: 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + + + S E +KWV E++
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK 124
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
N+N+ K+V++GD GK++L+ F K F E T+ + + + ++ ++ +W
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGIHIQSLL 119
DT+G Y ++ P+ Y + A +I +DI+ + + KKW E+Q + + LL
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 116
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
N+N+ K+V++GD GK++L+ F K F E T+ + + + ++ ++ +WD
Sbjct: 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 82
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGIHIQSLL 119
T+G Y ++ P+ Y + A +I +DI+ + + KKW E+Q + + LL
Sbjct: 83 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 137
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
N+N+ K+V++GD GK++L+ F K F E T+ + + + ++ ++ +WD
Sbjct: 19 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 77
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGIHIQSLL 119
T+G Y ++ P+ Y + A +I +DI+ + + KKW E+Q + + LL
Sbjct: 78 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 132
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE 70
K+V+LGD +GK+SL F + F + + TIG FF + + + + V +IWD GQ
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW 104
+ Y GA ++VYDITN SFE + W
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDW 101
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GDV GK+ L++ F K QF T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y P+ Y ++ + I + S E +KW E++
Sbjct: 63 QEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG G GKS+L ++FV+G F+E + TI ++ Q + V+ EI DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQS 117
+ ++ +Y + +VY IT Q++F +Q+L+ Q + ++
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQILRVKD 105
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG G GKS+L ++FV+G F+E + TI ++ Q + V+ EI DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQS 117
+ ++ +Y + +VY IT Q++F +Q+L+ Q + ++
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQILRVKD 105
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 60
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 102
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 60
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 102
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
QE Y L P+ Y ++ + I + S E +KW E++
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG G GKS+L ++FV+G F++ + TI ++ Q + V+ EI DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIHIQS 117
+ ++ +Y + +VY IT Q++F +Q+L+ Q + ++
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQILRVKD 105
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ Y R + V+ I N SFE ++ ++++
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ Y R + V+ I N SFE ++ ++++
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K+V++GD GK+ L+L F KG E + + F FS + + +WDTAGQ
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKG---EIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
E Y L P+ Y + ++ + + N+ SF+ + KW E++
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK 122
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K+V++GD GK+ L+L F KG E + + F FS + + +WDTAGQ
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKG---EIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
E Y L P+ Y + ++ + + N+ SF+ + KW E++
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK 121
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLL 119
E Y L P+ Y +I + + + ASFE + KW E++ H LL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILL 112
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ Y R + V+ I N SFE ++ ++++
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ Y R + V+ I N SFE ++ ++++
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ Y R + V+ I N SFE + ++++
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLL 119
E Y L P+ Y +I + + + ASFE + KW E++ H LL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILL 113
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLL 119
E Y L P+ Y +I + + + ASFE + KW E++ H LL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILL 113
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y ++ Y R + V+ I N SFE + ++++
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K+ KL + G G GKS+LV+RF+ +FI + T+ + + Q ++D V EI DT
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDT 83
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFE 99
AGQE + R ++VYDIT++ SFE
Sbjct: 84 AGQEDTIQREG-HMRWGEGFVLVYDITDRGSFE 115
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFV-KGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAG 68
K VL+GD GK+SLV+ + G E+ I AF FS ++V+ V+ ++ DTAG
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEY----IPTAFDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQ 111
Q+ + L P+ Y ++ + + + +SF+ ++KWV E++
Sbjct: 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH 121
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 65
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQ 109
E Y L P+ Y ++ + I + S E +KW E++
Sbjct: 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 107
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GDV GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + AS+E + KW E++
Sbjct: 68 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 108
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
KLVL+GDV GK++++ K + E T+ + + L + V+ +WDT+G
Sbjct: 11 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGS 69
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQEL 108
Y ++ P+ Y + A ++ +DI+ + + A KKW E+
Sbjct: 70 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 109
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
KLVL+GDV GK++++ K + E T+ + + L + V+ +WDT+G
Sbjct: 10 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGS 68
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQEL 108
Y ++ P+ Y + A ++ +DI+ + + A KKW E+
Sbjct: 69 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 108
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
KLVL+GDV GK++++ K + E T+ + + L + V+ +WDT+G
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGS 85
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQEL 108
Y ++ P+ Y + A ++ +DI+ + + A KKW E+
Sbjct: 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 125
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 5 GNKNINA-KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKF 61
G+K + A K V++GD GK+ L++ + F I F +S + V+ V
Sbjct: 1 GSKLMQAIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNL 57
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
+WDTAGQE Y L P+ Y ++I + + + ASFE + KW E++
Sbjct: 58 GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 106
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GDV GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 12 KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + AS+E + KW E++
Sbjct: 69 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 109
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 1 MATTGNKNINA----KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND 56
MA K N+ K++++G G GKS+L L+F+ +F+E E T A + + + ++
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDG 59
Query: 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF 98
V+ +I DTAGQE Y ++ Y+R + V+ IT SF
Sbjct: 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESF 101
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLL 119
E Y L P+ Y ++I + + + ASFE + KW E++ + +L
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAF--FSQTLAVNDATVKFEIWDTAG 68
K V++GD GK+ L++ + F E+ I F +S + V+ V +WDTAG
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
QE Y L P+ Y ++I + + + ASFE + KW E++
Sbjct: 61 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 102
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAF--FSQTLAVNDATVKFEIWDTAG 68
K V++GD GK+ L++ + F E+ I F +S + V+ V +WDTAG
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDGKPVNLGLWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
QE Y L P+ Y ++I + + + ASFE + KW E++
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 104
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASF 98
Y ++ Y+R + V+ IT SF
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESF 105
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASF 98
Y ++ Y+R + V+ IT SF
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESF 93
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASF 98
Y ++ Y+R + V+ IT SF
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESF 91
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F++ + VN ++ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK 102
Y Y I+VY +T+ SFE K
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIK 95
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F++ + VN ++ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK 102
Y Y I+VY +T+ SFE K
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIK 97
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F++ + VN ++ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK 102
Y Y I+VY +T+ SFE K
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIK 97
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F++ + VN ++ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 61
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK 102
Y Y I+VY +T+ SFE K
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIK 92
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + F E T+ ++ ++ V ++DTAGQE
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLL 119
Y L P+ Y +I + + N ASF+ K +WV EL+ ++ LL
Sbjct: 79 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL 127
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++FV G FIE + TI F+ + + V+ + EI DTAG E++ S+ +Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 83 AAAAIIVYDITNQASFERAK 102
I+VY + NQ SF+ K
Sbjct: 75 GQGFILVYSLVNQQSFQDIK 94
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLL 119
E Y L P+ Y +I + + + ASFE + KW E++ + +L
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLL 119
E Y L P+ Y +I + + + ASFE + KW E++ + +L
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + ASFE + KW E++
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + ASFE + KW E++
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + ASFE + KW E++
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 121
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLL 119
E Y L P+ Y +I + + + ASFE + KW E++ + +L
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + ASFE + KW E++
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + ASFE + KW E++
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAF---SGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + ASFE + KW E++
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 112
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 2 ATTGNKNINA-KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDAT 58
++G+ + A K V++GD GK+ L++ + F I F +S + V+
Sbjct: 1 GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKP 57
Query: 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
V +WDTAGQE Y L P+ Y +I + + + ASFE + KW E++
Sbjct: 58 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 109
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASF 98
Y ++ Y+R ++V+ IT SF
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESF 90
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAG E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASF 98
Y ++ Y+R ++V+ IT SF
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESF 94
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAF--FSQTLAVNDATVKFEIWDTAG 68
K V++GD GK+ L++ + F E+ I F +S + V+ V +WDTAG
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDSKPVNLGLWDTAG 60
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
QE Y L P+ Y +I + + + AS+E + KW E++
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 102
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRF----VKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
K V++GD GK+ L++ + + G++I +S + V+ V +WDTA
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDN-----YSANVMVDGKPVNLGLWDTA 86
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
GQE Y L P+ Y +I + + + ASFE + KW E++
Sbjct: 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GDV GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
E Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++ + G G GKSSLVLRFVKG F E T+ + Q ++ + + +I DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+ ++ + A I+VY IT++ S E K +++
Sbjct: 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQI 100
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASF 98
Y ++ Y+R + V+ IT SF
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESF 93
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFV-KG-QFIEFQESTIGAAFFSQTLAVNDATVKFEIW- 64
+ K+ ++G+ GKS+L+ F KG +F++ T G + + D TV E++
Sbjct: 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFL 77
Query: 65 -DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
DTAG + Y Y+ G AI+V+D+++ SFE K W + L++
Sbjct: 78 LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKS 124
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLL 119
E Y L P+ Y +I + + + ASFE + KW E++ + +L
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + ASFE + KW E++
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGIHIQSLL 119
E Y L P+ Y +I + + + ASFE + KW E++ + +L
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + ASFE + KW E++
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 105
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + A F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
E Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 5 GNKNINA----KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
G+K I+A K V++GD GK+ L++ + +F T+ + + T+ +
Sbjct: 1 GSKIISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYT 59
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
++DTAGQE Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 60 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 108
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 65
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 103
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVXIGGEPYTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 105
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 111
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 102
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 104
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 65
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 103
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++F++ F+ + TI ++ Q + ++D + +I DTAGQE + ++ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL 108
++V+ +T++ SFE K+ +++
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQI 102
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 104
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + ASF + KW E++
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 108
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 1 MATTGNKNINA---KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA 57
MAT+ + N KLV++GD G GKS+L ++F + F++ + TI ++ T N
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQW 65
Query: 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ 106
+ ++ DTAGQE + ++ Y R +IVY +T++ASFE ++ Q
Sbjct: 66 AI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ 113
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + ASF + KW E++
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F+E + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y +I + + + ASF + KW E++
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L L+G +GK++ V GQF E T+G F + + + T+K +WD GQ R
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 79
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGIHI 115
+ S+ Y RG +A + + D +Q E +K + L Q QGI +
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV 127
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + + DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLRDTAGQED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L L+G +GK++ V GQF E T+G F + + + T+K +WD GQ R
Sbjct: 33 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 88
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGIHI 115
+ S+ Y RG +A + + D +Q E +K + L Q QGI +
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV 136
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 1 MATTGNKNINA---KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA 57
MAT+ + N KLV++GD G GKS+L ++F + F+ + TI ++ T N
Sbjct: 1 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQW 60
Query: 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ 106
+ ++ DTAGQE + ++ Y R +IVY +T++ASFE ++ Q
Sbjct: 61 AI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ 108
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 1 MATTGNKNINA---KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA 57
MAT+ + N KLV++GD G GKS+L ++F + F+ + TI ++ T N
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQW 65
Query: 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ 106
+ ++ DTAGQE + ++ Y R +IVY +T++ASFE ++ Q
Sbjct: 66 AI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ 113
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIK 108
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+V+LG GK+SL +FV+G+F E + T+ + S+ + + + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
Y L + G ++VY +T+ SF+ + Q+L
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIK 106
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIK 106
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + + T+ + + T+ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 1 MATTGNKNINA---KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA 57
MAT+ + N KLV++GD G GKS+L ++F + F++ + TI ++ T N
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQW 65
Query: 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ 106
+ ++ DTAGQE + ++ Y R +IVY +T++ASFE ++ Q
Sbjct: 66 AI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ 113
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE + ++++
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIK 102
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE + ++++
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIK 102
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + +++++G GAGK++++ + G+ I +TI F+ V + F +W
Sbjct: 14 GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFN-VETVQYKNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
D GQ+R SL YYR I V D +++ A++ +Q +
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRM 110
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 25/120 (20%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70 ERYHSLAPMYY--------------RGAAAAI-----IVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y RG I I + + + ASFE + KW E++
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + +++++G GAGK++++ + G+ I +TI F+ V + F +W
Sbjct: 14 GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFN-VETVQYKNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
D GQ+R SL YYR I V D +++ A++ +Q +
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRM 110
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAG E
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLED 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 105
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQEL 108
Y L P+ Y ++ + + + +SFE K KWV E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF--QESTIGAAFFSQTLAVNDATVK---FEIWDT 66
KL ++G+ G+GK++L+ + K + + Q +T+G + + D + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITN-QASFERAKKWVQELQAQG 112
AG+E ++S P + A + VYD++ QA + K W+ ++A+
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARA 110
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF--QESTIGAAFFSQTLAVNDATVK---FEIWDT 66
KL ++G+ G+GK++L+ + K + + Q +T+G + + D + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITN-QASFERAKKWVQELQAQG 112
AG+E ++S P + A + VYD++ QA + K W+ ++A+
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARA 108
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + +I ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIK 107
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + +I ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L L+G +GK++ V GQF E T+G F + + + T+K IWD GQ R
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQPR 79
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGIHI 115
+ S+ Y RG A + + D ++ E ++ + L Q QGI +
Sbjct: 80 FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPV 127
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG+E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 10 GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 62
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
D GQ++ L YY G I V D ++ + A+ QEL
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELH 104
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 9 GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 61
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
D GQ++ L YY G I V D ++ + A+ QEL
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELH 103
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE + ++++
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIK 119
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G GAGK++++ + G+ I +TI F+ V + F +WD GQ+R
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFN-VETVQYKNISFTVWDVGGQDR 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
SL YYR I V D +++ A++ +Q +
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRM 93
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 83 AAAAIIVYDITNQASF 98
+ V+ I N SF
Sbjct: 93 GEGFLCVFAINNSKSF 108
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIK 106
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + +++++G GAGK++++ + G+ I +TI F+ V + F +W
Sbjct: 14 GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFN-VECVQYCNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
D GQ+R SL YY I V D +++ A++ +Q +
Sbjct: 67 DVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRM 110
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G N ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 371
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
D GQ++ L YY G I V D ++ + A+ QEL
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELH 413
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG AGK++++ + GQ + +TI F+ V VKF +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
L YY G I V D ++ + A+ QEL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELH 91
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG AGK++++ + GQ + +TI F+ V VKF +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
L YY G I V D ++ + A+ QEL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELH 91
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ 109
+ V+ I N SFE ++ ++++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KSSLVLRFVKG F + TI + Q ++ + + +I DT G ++ ++ +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDT-YRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 83 AAAAIIVYDITNQASFE 99
A I+V+ +T++ S E
Sbjct: 80 GHAFILVFSVTSKQSLE 96
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++VLLGD G GK+SL F Q + E +G + +TL V+ + DT E+
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 72 YHS--LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA--QGIHIQSLL 119
+G +A +IVY I ++ SFE A + +L+ Q H+ +L
Sbjct: 65 LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL 116
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 10 GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 62
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
D G ++ L YY G I V D ++ + A+ QEL
Sbjct: 63 DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELH 104
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
N ++++LG GAGK++++ R G+ + + TIG F +TL+ + +K +WD
Sbjct: 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSYKN--LKLNVWDLG 70
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKK 103
GQ YY AA I V D T++ A K
Sbjct: 71 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASK 106
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++ LG AGK++++ + GQ + +TI F+ V VKF +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
L YY G I V D ++ + A+ QEL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELH 91
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++F++ F+ + TI ++ ++ +V+ + +I DTAGQE + ++ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 83 AAAAIIVYDITNQASFERAKK 103
++V+ I ++ SF K
Sbjct: 81 GHGFLLVFAINDRQSFNEVGK 101
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ ++++LG AGK++++ + GQ + +TI F+ V VKF +WD G
Sbjct: 1 MEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGG 55
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
++ L YY G I V D ++ + A+ QEL
Sbjct: 56 LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELH 93
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ ++++LG AGK++++ + GQ + +TI F+ V VKF +WD G
Sbjct: 2 MEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGG 56
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
++ L YY G I V D ++ + A+ QEL
Sbjct: 57 LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELH 94
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VK 60
G+ N ++VL+G+ G GKS+L F ++ +G + +TL V+ + +
Sbjct: 1 GSGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKK 103
++W+ G+ + L + A +IVY IT++ASFE+A +
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE 101
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 12 KLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEIWDTA 67
++VL+G+ G GKS+L F ++ +G + +TL V+ + + ++W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKK 103
G+ + L + A +IVY IT++ASFE+A +
Sbjct: 68 GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASE 101
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 12 KLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEIWDTA 67
++VL+G+ G GKS+L F ++ +G + +TL V+ + + ++W+
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKK 103
G+ + L + A +IVY IT++ASFE+A +
Sbjct: 99 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE 132
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 12 KLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEIWDTA 67
++VL+G+ G GKS+L F ++ +G + +TL V+ + + ++W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKK 103
G+ + L + A +IVY IT++ASFE+A +
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE 101
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
S YY I+V D T++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDR 96
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
S YY I+V D T++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDR 96
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK+S++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 19 RILMVGLDAAGKTSILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDK 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKK 103
L YY+ A I V D ++ A++
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRDRIGEARE 105
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 77
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
S YY I+V D T++
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDR 101
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 78
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
S YY I+V D T++
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDR 102
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG GAGK++++ R G+ + +TI F+ V +KF++WD GQ
Sbjct: 4 RILILGLDGAGKTTILYRLQVGEVV----TTIPTIGFN-VETVTYKNLKFQVWDLGGQTS 58
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
YY A I V D ++
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDR 82
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ+R
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNICFTVWDVGGQDR 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
L Y++ I V D ++ ER ++ ELQ
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDR---ERIQEVADELQ 108
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
+ +++++G AGK++++ + G+ + +TI F+ V + F +WD GQ
Sbjct: 17 DVRILMVGLDAAGKTTILYKVKLGEVV----TTIPTIGFN-VETVEFRNISFTVWDVGGQ 71
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKK 103
++ L YY I V D ++ + A++
Sbjct: 72 DKIRPLWRHYYSNTDGLIFVVDSNDRERIDDARE 105
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDK 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
L Y++ I V D ++ A++ + + A+
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 113
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDK 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
L Y++ I V D ++ A++ + + A+
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 112
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K +L++LG AGK++++ +F G+ I+ T+G F +TL K IWD
Sbjct: 13 KERELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLG--FNIKTL--EHRGFKLNIWDV 67
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
GQ+ S Y+ I V D ++ + ++ +Q L
Sbjct: 68 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 109
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
L Y++ I V D ++ A++ + + A+
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 96
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLG G GKS+L F G + E+ + +++ V+ ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
L A +IVY +T++ SFE+A + +L+
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 99
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 31 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNICFTVWDVGGQDK 85
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
L Y++ I V D ++ ER ++ ELQ
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQ 120
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLG G GKS+L F G + E+ + +++ V+ ++D Q+
Sbjct: 9 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
L A +IVY +T++ SFE+A + +L+
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 104
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ L +LG GAGKS+L ++F+ +FI + + + S+ V+ V + DTA
Sbjct: 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTAD 78
Query: 69 QERYHSLAPMYYRGAAAAIIVYDI 92
+ + Y A A ++VY +
Sbjct: 79 LDTPRN-CERYLNWAHAFLVVYSV 101
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLG G GKS+L F G + E+ + +++ V+ ++D Q+
Sbjct: 9 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ 109
L A +IVY +T++ SFE+A + +L+
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 104
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K +L++LG AGK++++ +F G+ ++ T+G F +TL K IWD
Sbjct: 15 KERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDV 69
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
GQ+ S Y+ I V D ++ + ++ +Q L
Sbjct: 70 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDK 221
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
L Y++ I V D ++ A++ + + A+
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 261
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K +L++LG AGK++++ +F G+ ++ T+G F +TL K IWD
Sbjct: 15 KERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDV 69
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
GQ+ S Y+ I V D ++ + ++ +Q L
Sbjct: 70 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG GAGK++++ R G+ + +TI F+ V +KF++WD G
Sbjct: 6 RILILGLDGAGKTTILYRLQVGEVV----TTIPTIGFN-VETVTYKNLKFQVWDLGGLTS 60
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
YY A I V D ++
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDR 84
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG GAGK++++ R G+ + +TI F+ V +KF++WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVV----TTIPTIGFN-VETVTYKNLKFQVWDLGGLTS 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
YY A I V D ++
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDR 87
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---FEIW 64
N K++++G AGK++++ +F+ + + TIG+ V + VK F +W
Sbjct: 14 NQEHKVIIVGLDNAGKTTILYQFLMNEVVH-TSPTIGSN-------VEEIVVKNTHFLMW 65
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYD 91
D GQE S YY I+V D
Sbjct: 66 DIGGQESLRSSWNTYYSNTEFIILVVD 92
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---F 61
G K+ K++L+G+ G GKS+L F Q E + + + V+ V +
Sbjct: 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77
Query: 62 EIW---DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIH 114
+IW D G R H L A +IV+ +T++ SF + + + L+A H
Sbjct: 78 DIWEQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH 128
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 22 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDK 76
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK 102
L Y++ I V D ++ A+
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR 107
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD G ++
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGLDK 58
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
L Y++ I V D ++ A++ + + A+
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 98
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL 108
+++ F ++D +GQ RY +L YY+ A I V D +++ AK+ + L
Sbjct: 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTL 116
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---FEIW---D 65
K++LLG+ G GKS+L F Q E + + + V+ V ++IW D
Sbjct: 14 KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIH 114
G + H L A +IV+ +T++ SF + + + L+A H
Sbjct: 74 AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH 117
>pdb|3OLH|A Chain A, Human 3-Mercaptopyruvate Sulfurtransferase
Length = 302
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 37 EFQESTI-GAAFFSQTLAVNDATVKFEIWDT--AGQERYHSLAPMYYRGAAAAIIVYDIT 93
EF+E I GAAFF ++ + + +D G E + A GAA +++YD +
Sbjct: 61 EFEERHIPGAAFFD----IDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDAS 116
Query: 94 NQASFERAKKWVQELQAQGIHIQSLLQ 120
+Q + + W +A G H SLL
Sbjct: 117 DQGLYSAPRVWWM-FRAFGHHAVSLLD 142
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
+L +LGD +GKSSL+ RF+ G Q +E ES + + + V+ T I + AG
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ----YKKEMLVDGQTHLVLIREEAG- 63
Query: 70 ERYHSLAP-MYYRGAAAAII-VYDITNQASFE 99
AP + G A A+I V+ + ++ SF+
Sbjct: 64 ------APDAKFSGWADAVIFVFSLEDENSFQ 89
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLA-----VNDATVK---FEI 63
K+ L+GD AGK+SL+ + + F + T G ++ ND +K F
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
WD GQE H+ + ++ +++ D ++ W++ ++ G
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSN---KHYWLRHIEKYG 148
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---FEIW---D 65
K++L+G+ G GKS+L F Q E + + + V+ V ++IW D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGIH 114
G + H L A +IV+ +T++ SF + + + L+A H
Sbjct: 64 AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH 107
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
+L +LGD +GKSSL+ RF+ G Q +E ES + + + V+ T I + AG
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ----YKKEMLVDGQTHLVLIREEAG- 63
Query: 70 ERYHSLAP-MYYRGAAAAII-VYDITNQASFE 99
AP + G A A+I V+ + ++ SF+
Sbjct: 64 ------APDAKFSGWADAVIFVFSLEDENSFQ 89
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 21 AGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80
AGK++++ +F G+ ++ T+G F +TL K IWD GQ+ S Y+
Sbjct: 29 AGKTTILKKF-NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQKSLRSYWRNYF 83
Query: 81 RGAAAAIIVYDITNQASFERAKKWVQELQA 110
I V D A +R + +ELQ+
Sbjct: 84 ESTDGLIWVVD---SADRQRXQDCQRELQS 110
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++LLG AGK++L L+ + + I T G S V K +WD GQ +
Sbjct: 19 RILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGQRK 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFE 99
Y+ I V D ++ FE
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++LLG AGK++L L+ + + I T G S V K +WD GQ +
Sbjct: 18 RILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGQRK 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFE 99
Y+ I V D ++ FE
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|1AVB|A Chain A, Arcelin-1 From Phaseolus Vulgaris L
pdb|1AVB|B Chain B, Arcelin-1 From Phaseolus Vulgaris L
Length = 226
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 12 KLVLLGDVG-AGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV 59
L+L GD + + L+L VKG +E ++G AF+S + +ND T+
Sbjct: 15 NLILQGDATVSSEGHLLLTNVKGN----EEDSMGRAFYSAPIQINDRTI 59
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++LLG AGK++L L+ + + I T G S V K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGQRK 60
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFE 99
Y+ I V D ++ FE
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG AGK+S++ R G + + +TL + + FE+WD GQ
Sbjct: 24 RVLMLGLDNAGKTSILYRLHLG---DVVTTVPTVGVNLETLQYKN--ISFEVWDLGGQTG 78
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK 102
Y+ A I V D T++ AK
Sbjct: 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK 109
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 3 TTGNKNI-----NAKLVLLGDVGAGKSSL---VLRFVKGQFIEFQESTIGAAFFSQTLAV 54
++G +N+ +++L+G +GKSS+ V + F EST + ++
Sbjct: 8 SSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLEST--NKIYKDDIS- 64
Query: 55 NDATVKFEIWDTAGQERYHSLA---PMYYRGAAAAIIVYD 91
N + V F+IWD GQ + M +RG A I V D
Sbjct: 65 NSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVID 104
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF------ 61
N KL+L+G G+GKSS+ + + F +GA T+ V + ++F
Sbjct: 4 NNRKKLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGA-----TIDVEHSHLRFLGNMTL 57
Query: 62 EIWDTAGQERY 72
+WD GQ+ +
Sbjct: 58 NLWDCGGQDVF 68
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
Length = 181
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTL-------AVNDATVKF 61
+ +++L G +GKSS+ Q + F + + F ++ N + V F
Sbjct: 3 VKPRILLXGLRRSGKSSI-------QKVVFHKXSPNETLFLESTNKICREDVSNSSFVNF 55
Query: 62 EIWDTAGQERYHSLAPMY---YRGAAAAIIVYD 91
+IWD GQ + Y +RG A I V D
Sbjct: 56 QIWDFPGQIDFFDPTFDYEXIFRGTGALIFVID 88
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++LLG AGK++L L+ + + I T G S V K +WD G +
Sbjct: 6 RILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGLRK 60
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFE 99
Y+ I V D ++ FE
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 49 SQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84
S LA D + IW+ + E H AP+ GAA
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAA 1180
>pdb|1LUL|A Chain A, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|B Chain B, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|C Chain C, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|D Chain D, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|E Chain E, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1LUL|F Chain F, Db58, A Legume Lectin From Dolichos Biflorus
pdb|1G7Y|A Chain A, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|B Chain B, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|C Chain C, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|D Chain D, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|E Chain E, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
pdb|1G7Y|F Chain F, The Crystal Structure Of The 58kd Vegetative Lectin From
The Tropical Legume Dolichos Biflorus
Length = 253
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 7 KNINAK-LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND 56
KN N+ +L GD S L L VKG + S++G AF+S + + D
Sbjct: 9 KNFNSSSFILQGDATVSSSKLRLTKVKGNGLP-TLSSLGRAFYSSPIQIYD 58
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++ +G +GK+ L +R + GQ+ + Q S T +A + N+ + D G E
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN---NNRGNSLTLIDLPGHES 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE 107
++ +A A++ + + A+F+R K V E
Sbjct: 67 LRFQLLDRFKSSARAVVF--VVDSAAFQREVKDVAE 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,391,663
Number of Sequences: 62578
Number of extensions: 107413
Number of successful extensions: 987
Number of sequences better than 100.0: 350
Number of HSP's better than 100.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 351
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)