Query 032796
Match_columns 133
No_of_seqs 103 out of 340
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_h 60S ribosomal protein L 100.0 6.4E-75 2.2E-79 437.7 4.5 133 1-133 1-133 (133)
2 3u5e_e 60S ribosomal protein L 100.0 2.1E-73 7.1E-78 428.1 11.3 130 1-131 1-130 (130)
3 4a17_X RPL32, 60S ribosomal pr 100.0 4.1E-73 1.4E-77 428.3 12.4 133 1-133 1-134 (134)
4 2zkr_y 60S ribosomal protein L 100.0 1.2E-72 4.1E-77 426.0 5.7 133 1-133 2-135 (135)
5 3j21_b PFEL32, 50S ribosomal p 100.0 2.8E-62 9.7E-67 367.6 8.2 114 9-124 14-129 (130)
6 1vq8_Y 50S ribosomal protein L 100.0 1.5E-43 5.1E-48 286.7 9.2 112 12-125 123-234 (241)
7 3nkl_A UDP-D-quinovosamine 4-d 38.6 40 0.0014 22.5 4.1 45 77-121 51-96 (141)
8 2dt5_A AT-rich DNA-binding pro 33.9 46 0.0016 25.3 4.2 46 75-123 125-171 (211)
9 1sb0_B Protein C-MYB; CREB-bin 31.9 15 0.00053 20.1 0.8 13 79-91 4-16 (26)
10 2p0v_A Hypothetical protein BT 27.8 5.9 0.0002 34.9 -2.1 68 43-116 233-308 (489)
11 3v7e_A Ribosome-associated pro 26.5 1E+02 0.0034 19.8 4.3 43 79-121 15-57 (82)
12 3keo_A Redox-sensing transcrip 21.7 75 0.0025 24.4 3.4 47 75-123 132-179 (212)
13 3h5t_A Transcriptional regulat 21.5 40 0.0014 26.0 1.8 29 99-127 34-62 (366)
No 1
>3iz5_h 60S ribosomal protein L32 (L32E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_h 2zkr_9
Probab=100.00 E-value=6.4e-75 Score=437.68 Aligned_cols=133 Identities=90% Similarity=1.343 Sum_probs=131.9
Q ss_pred CCCCCCcccccccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecc
Q 032796 1 MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNT 80 (133)
Q Consensus 1 m~~p~~~~kivKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nv 80 (133)
|+.|+++++||||+|++|+|||||+|++|++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+|||+
T Consensus 1 m~~~~~~~kivKKrtkkF~Rh~sdry~ri~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~kktr~l~PsGf~~~lV~Nv 80 (133)
T 3iz5_h 1 MAVPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNV 80 (133)
T ss_dssp CHHHHHHHHHTTCCCSCCCCTTGGGSSSSCSSCCCCCSTTCHHHHTCTTSCCCCCGGGCCCTTTTTBCTTSCEEEEESSH
T ss_pred CCcCCCCCcceeccCCCccccccccccccCCCCCCCCCcccchhccccCCcCCCccCCCCChhhcccCCCCCeEEEeCCH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCccccCCCCceeccccC
Q 032796 81 KELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133 (133)
Q Consensus 81 keLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~arl~~~e~~ 133 (133)
+|||+|+|||++|||||||+||++||++|+|+|+||||+|+||+|||++||||
T Consensus 81 keLe~L~m~n~~~aaeIAh~Vs~rkR~~IverA~qL~irV~Np~arl~~ee~e 133 (133)
T 3iz5_h 81 SELELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133 (133)
T ss_dssp HHHHHHHHHTTSEEEEECSSSCHHHHHHHHHHHHHHTCCSSHHHHHHHHHCCC
T ss_pred HHHHHHhcCCCccEEEEecCcccccHHHHHHHHHHhCCcccCCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999997
No 2
>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 4b6a_e 3jyw_0
Probab=100.00 E-value=2.1e-73 Score=428.09 Aligned_cols=130 Identities=55% Similarity=0.808 Sum_probs=126.4
Q ss_pred CCCCCCcccccccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecc
Q 032796 1 MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNT 80 (133)
Q Consensus 1 m~~p~~~~kivKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nv 80 (133)
|+ |+++++||||+|++|+|||||+|++|++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+||||
T Consensus 1 m~-~~~~~kivKkrtkkF~R~~sdry~ri~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~kktr~l~PsGf~~~lV~Nv 79 (130)
T 3u5e_e 1 MA-SLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANV 79 (130)
T ss_dssp -C-CCCCSCCCCSCCSCCCCTTTTTCTTSCSSCCCCCCSSCTTTTTCTTSCCCCCGGGCCCTTTTTBCTTSCEEEEESSH
T ss_pred CC-CCCCCceeeccCCCccccccccccccCCCCCCCCCcccchhccccCCcCCCcCCCCCChhhcccCCCCCceEEeCCH
Confidence 77 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCccccCCCCceeccc
Q 032796 81 KELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQE 131 (133)
Q Consensus 81 keLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~arl~~~e 131 (133)
+|||+|+|||++|||||||+||++||++|+|+|+||||+|+||+|||++||
T Consensus 80 keLe~Llm~n~~~~aeIAh~Vs~rkR~~IverA~ql~irV~Np~arl~~ee 130 (130)
T 3u5e_e 80 KDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRLALEA 130 (130)
T ss_dssp HHHGGGTTCTTTEEEEECTTCCHHHHHHHHHHHHHHTCCBSCTTTTCCC--
T ss_pred HHHHHHhcCCcccEEEEecccccccHHHHHHHHHHhCCcccCCCccccccC
Confidence 999999999999999999999999999999999999999999999999997
No 3
>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X
Probab=100.00 E-value=4.1e-73 Score=428.28 Aligned_cols=133 Identities=50% Similarity=0.884 Sum_probs=123.1
Q ss_pred CC-CCCCcccccccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEec
Q 032796 1 MA-VPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79 (133)
Q Consensus 1 m~-~p~~~~kivKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~n 79 (133)
|| .|+++++||||+|++|+|||||+|++|++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+|||
T Consensus 1 ~~~~~~~~~kivKkrtkkF~R~~sdry~ri~~~WRKPrGiDnrvRrrfKG~~~mp~iGYgS~kktR~l~PsGf~~~lV~N 80 (134)
T 4a17_X 1 MAIKPVAHKKIIKKRTKKFVRFESEDFAKLDSSWRRPRGIDNRVRRRFRGQRRMAKIGFASDAATKHLLPNGFKKFLIRN 80 (134)
T ss_dssp --CCCCCCCCCCCSCCSCCCCTTTTTCSSSCCSCCCCCCSSCTGGGTCTTSCCCCCSTTSCCTTTTTBCTTSCEEEEECS
T ss_pred CCccCCCCCcceeccCCCccccccccccccCCCCCCCCCcccchhhcccCccCCCccCcCCChhhcccCCCCCeEEEeCC
Confidence 55 39999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCccccCCCCceeccccC
Q 032796 80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133 (133)
Q Consensus 80 vkeLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~arl~~~e~~ 133 (133)
|+|||+|+|||++|||||||+||++||++|+|+|+||||+|+||+|||++|||.
T Consensus 81 vkeLe~Llm~n~~~aaeIAh~Vs~rkR~~IverA~qL~irV~Np~arl~~ee~~ 134 (134)
T 4a17_X 81 PADLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVRLTNANAKVKVQESA 134 (134)
T ss_dssp SHHHHHHHHHTTTEEEEECTTSCHHHHHHHHHHHHHHTCCBSSCCCC-------
T ss_pred HHHHHHHhcCCcccEEEEecCcccccHHHHHHHHHHhCCcccCCcccceecccC
Confidence 999999999999999999999999999999999999999999999999999983
No 4
>2zkr_y 60S ribosomal protein L32; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.2e-72 Score=426.02 Aligned_cols=133 Identities=68% Similarity=1.093 Sum_probs=58.5
Q ss_pred CCC-CCCcccccccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEec
Q 032796 1 MAV-PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79 (133)
Q Consensus 1 m~~-p~~~~kivKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~n 79 (133)
|+. |+++++|+||+|++|+|||||+|+||++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+|||
T Consensus 2 m~~~~~~~~kivKkr~~kF~R~~sdry~rl~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~k~tR~l~PsGf~~~lV~N 81 (135)
T 2zkr_y 2 AALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHN 81 (135)
T ss_dssp ---CTTTTTSSSSSCCCC-CCTTTTTCTTSCC-CCCCCCSSCTTTCC-CCSCCCSCTTSCCCTTCC--------------
T ss_pred CCCcCCCCccccccCCCcccCcchhhccccCccccCCCCCcccceeeccCCCCCCcccCCCChhhcccCCCCCeEEEeCC
Confidence 453 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCccccCCCCceeccccC
Q 032796 80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133 (133)
Q Consensus 80 vkeLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~arl~~~e~~ 133 (133)
++|||+|+|||++|||||||+||++||++|+|+|+||||+|+||+|||++||+|
T Consensus 82 vkeLe~Llm~n~~~aaeIah~Vs~kKR~~IverA~eL~IkV~N~~arl~~~e~e 135 (135)
T 2zkr_y 82 VKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135 (135)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHhcCCCceEEEEecccccccHHHHHHHHHHhCCeeeCCccccchhccC
Confidence 999999999999999999999999999999999999999999999999999987
No 5
>3j21_b PFEL32, 50S ribosomal protein L32E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.8e-62 Score=367.62 Aligned_cols=114 Identities=43% Similarity=0.655 Sum_probs=111.4
Q ss_pred cccccCCCCccCCCCCCcccccC--cccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecchhhHHH
Q 032796 9 KIVKKRLKKFKRPQSDRKISVKE--NWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELL 86 (133)
Q Consensus 9 kivKkr~~kF~R~~sdr~~ri~~--sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nvkeLe~L 86 (133)
..+|+++|+|+|||||+|++|++ |||||+||||+||++|+|+++||+||||||++|||||||||++|+||||+|||+|
T Consensus 14 ~~~k~k~pkF~R~~sdr~~ri~~~~~WRKPrGiDnrvRrrfKG~~~mp~iGYgS~kktR~l~PsGf~~~lV~NvkeLe~L 93 (130)
T 3j21_b 14 ARLKRKKPRFLRQEWWRYPKFKNDPKWRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL 93 (130)
T ss_dssp HHHHHCCCCCCCSCCSSCSSSCSSCCCCCCCCSSCHHHHTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEECSTTTTTTC
T ss_pred HHHhhcCCCeeccccccceecCCCCCCCCCCCcccchhccccCCCCCCccCCCCcccccccCCCCCceEEecCHHHHHhh
Confidence 46788999999999999999999 9999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCccceEEeeccCccccHHHHHHHHHhcCccccCCC
Q 032796 87 MMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKL 124 (133)
Q Consensus 87 ~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~ 124 (133)
||++|||||||+||++||++|+|+|+||||+|+||+
T Consensus 94 --~~~~~~aeIAh~Vs~rkR~~IverA~qL~ikV~Np~ 129 (130)
T 3j21_b 94 --DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLNPR 129 (130)
T ss_dssp --CTTTEEEEECTTCCHHHHHHHHHHHHHHTCCCCCCC
T ss_pred --CCCCceEEEecCcccccHHHHHHHHHHhCCcccCCC
Confidence 899999999999999999999999999999999997
No 6
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=100.00 E-value=1.5e-43 Score=286.68 Aligned_cols=112 Identities=33% Similarity=0.474 Sum_probs=109.8
Q ss_pred ccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecchhhHHHhhcCc
Q 032796 12 KKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 91 (133)
Q Consensus 12 Kkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nvkeLe~L~~~~~ 91 (133)
++++|+|+|||||+|+||+++||+|+||||+||++|+|+++||+||||||++||++|||||+.|+|||++||+.| +|+
T Consensus 123 ~~~~~efvr~d~d~~~~~~~~wrkP~g~d~~vr~~f~g~~~~~~ig~~s~~k~r~~lp~G~~~~~v~n~~dL~~l--~~~ 200 (241)
T 1vq8_Y 123 RVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGV--DGD 200 (241)
T ss_dssp HHCCCCCCCTTGGGCTTSCSSCCCCCCTTCTTTTTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEESSGGGGTTC--CTT
T ss_pred ccCCCCeeccchhheeecccCcCCCCCccHHHHHHHhCCCCCCccccCCCCceEEECCCCCEeeeccCHhHhhcc--CcH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999998 699
Q ss_pred cceEEeeccCccccHHHHHHHHHhcCccccCCCC
Q 032796 92 TYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLA 125 (133)
Q Consensus 92 ~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~a 125 (133)
+||++|+|+||+++|.+|+++|+|+||+|+||++
T Consensus 201 ~~~a~i~~~tGskkh~~i~~~A~~~gikv~n~~~ 234 (241)
T 1vq8_Y 201 TEAVRIASKVGARKRERIEEEAEDAGIRVLNPTY 234 (241)
T ss_dssp TEEEEECTTSCHHHHHHHHHHHHHTTCCBSSCCE
T ss_pred HHHHHHHHHhccHhHHHHHHHHHHcCCcccCCCc
Confidence 9999999999999999999999999999999987
No 7
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=38.64 E-value=40 Score=22.52 Aligned_cols=45 Identities=27% Similarity=0.264 Sum_probs=31.1
Q ss_pred EecchhhHHHhhcCccceEEeecc-CccccHHHHHHHHHhcCcccc
Q 032796 77 VHNTKELELLMMHNRTYCAEIAHD-VSTRKRKEIVERAAQLDIVVT 121 (133)
Q Consensus 77 V~nvkeLe~L~~~~~~~~a~Ia~~-Vg~kkr~~I~erA~el~ikV~ 121 (133)
|...+||+.+.....-..+-||-. .....+.+|++.+.++|+.|.
T Consensus 51 V~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~ 96 (141)
T 3nkl_A 51 IYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVL 96 (141)
T ss_dssp EECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred EECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 334888887764334456666643 334567899999999999875
No 8
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=33.95 E-value=46 Score=25.28 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=33.0
Q ss_pred EEEecchhhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCcc-ccCC
Q 032796 75 FVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIV-VTNK 123 (133)
Q Consensus 75 ~lV~nvkeLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ik-V~N~ 123 (133)
+.|....||+.+... .-.++-||- ++-.+.+|++.+.+.|++ |+|-
T Consensus 125 v~V~~~~dl~ell~~-~ID~ViIA~--Ps~~~~ei~~~l~~aGi~~Ilnf 171 (211)
T 2dt5_A 125 GVIEHVDLLPQRVPG-RIEIALLTV--PREAAQKAADLLVAAGIKGILNF 171 (211)
T ss_dssp EEEEEGGGHHHHSTT-TCCEEEECS--CHHHHHHHHHHHHHHTCCEEEEC
T ss_pred CeeecHHhHHHHHHc-CCCEEEEeC--CchhHHHHHHHHHHcCCCEEEEC
Confidence 345568899988744 455555554 445677999999999998 7773
No 9
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=31.95 E-value=15 Score=20.06 Aligned_cols=13 Identities=54% Similarity=0.767 Sum_probs=10.1
Q ss_pred cchhhHHHhhcCc
Q 032796 79 NTKELELLMMHNR 91 (133)
Q Consensus 79 nvkeLe~L~~~~~ 91 (133)
.++|||.|+|..+
T Consensus 4 riKElELLLMS~E 16 (26)
T 1sb0_B 4 RIKELELLLMSTE 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH
Confidence 3789999998643
No 10
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=27.81 E-value=5.9 Score=34.88 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=42.6
Q ss_pred hhccccCCCCCCCCCCCCCccccccCCCCceEE--------EEecchhhHHHhhcCccceEEeeccCccccHHHHHHHHH
Q 032796 43 VRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKF--------VVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAA 114 (133)
Q Consensus 43 vRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~--------lV~nvkeLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~ 114 (133)
+|.--.+.--.++=|+|+|-+.=||.-|||++. +|++--=.-+-+ .++++|+..++.. .++.+++.
T Consensus 233 ~r~t~~~~dtl~~~G~G~pv~~tGLi~S~fRPSDDa~~yg~~ipSN~~a~v~L----~~aaeia~~v~~d--~~la~~~~ 306 (489)
T 2p0v_A 233 QRKTERALDTMTNDGWGNPVKPVGLIASAFRPSDDATTFQFLVPSNFFAVTSL----RKAAEILNTVNRK--PALAKECT 306 (489)
T ss_dssp CCCBSCGGGSCHHHHTCSCCCCSSCCCCSBCTTSCBCSSSEEHHHHHHHHHHH----HHHHHHHHHTSCC--HHHHHHHH
T ss_pred eecCCCcccccccCCCCCccCCCCceeCCCCCCCcchhcCcchHHHHHHHHHH----HHHHHHHHHhccC--HHHHHHHH
Confidence 333344566688889999998889988888764 444332222222 5678888888832 34445544
Q ss_pred hc
Q 032796 115 QL 116 (133)
Q Consensus 115 el 116 (133)
++
T Consensus 307 ~l 308 (489)
T 2p0v_A 307 AL 308 (489)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 11
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=26.52 E-value=1e+02 Score=19.83 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=33.8
Q ss_pred cchhhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCcccc
Q 032796 79 NTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVT 121 (133)
Q Consensus 79 nvkeLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~ 121 (133)
=.++....+...+...+-||++++..-...|...|.+.+|.+.
T Consensus 15 G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~ 57 (82)
T 3v7e_A 15 GTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVS 57 (82)
T ss_dssp SHHHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEE
T ss_pred cHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3444445555677888999999999888899999999999765
No 12
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=21.68 E-value=75 Score=24.43 Aligned_cols=47 Identities=11% Similarity=0.132 Sum_probs=32.0
Q ss_pred EEEecchhhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCcc-ccCC
Q 032796 75 FVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIV-VTNK 123 (133)
Q Consensus 75 ~lV~nvkeLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ik-V~N~ 123 (133)
+.|..++||+.+.....-..+-| ++.+....++.+++.+.||+ |+|-
T Consensus 132 vpV~~~~dL~~~v~~~~Id~vII--AvPs~~aq~v~d~lv~~GIk~I~nF 179 (212)
T 3keo_A 132 IPVYGISTINDHLIDSDIETAIL--TVPSTEAQEVADILVKAGIKGILSF 179 (212)
T ss_dssp CBEEEGGGHHHHC-CCSCCEEEE--CSCGGGHHHHHHHHHHHTCCEEEEC
T ss_pred eEEeCHHHHHHHHHHcCCCEEEE--ecCchhHHHHHHHHHHcCCCEEEEc
Confidence 44556899999874333444444 45666788999999999995 4554
No 13
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.45 E-value=40 Score=25.96 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=18.4
Q ss_pred ccCccccHHHHHHHHHhcCccccCCCCce
Q 032796 99 HDVSTRKRKEIVERAAQLDIVVTNKLARL 127 (133)
Q Consensus 99 ~~Vg~kkr~~I~erA~el~ikV~N~~arl 127 (133)
..|+...|+.|.+-|+|||...-|+.||-
T Consensus 34 ~~Vs~~tr~rV~~~a~~lgY~~pn~~a~~ 62 (366)
T 3h5t_A 34 EQLSAELRQRILDTAEDMGYLGPDPVARS 62 (366)
T ss_dssp GGSCHHHHHHHHHHHHHTTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 35899999999999999998546777763
Done!