BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032797
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Query: 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP---QDS 84
++IDNYDSF YN+ Q +GELG + V RNDE++++ ++R +P ++ISPGPG P +D
Sbjct: 5 LIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDI 64
Query: 85 GISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCVL 133
G+SL + LG P+ GVC+G Q IG AFG A K S ++
Sbjct: 65 GVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNII 113
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
I+++DN DSFTYNL + G+ +YRN E+ +E L+ +++SPGPG P +
Sbjct: 4 ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE 63
Query: 84 SGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
+G + + L +P+ G+C+G Q I EA+G
Sbjct: 64 AGCMPELLQRLRGQLPIIGICLGHQAIVEAYG 95
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKR-KNPRGVLISPGPGAPQ 82
I+++DN DSFT+NL + G++ +YRN + ++ L KNP +++SPGPG P
Sbjct: 3 ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPV-LMLSPGPGVPS 61
Query: 83 DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
++G + + L +P+ G+C+G Q I EA+G
Sbjct: 62 EAGCMPELLTRLRGKLPIIGICLGHQAIVEAYG 94
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP- 81
+K+ I+++D +T + + + ELG + E++ D +T +++ NP G+++S GP +
Sbjct: 6 HKHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTT 64
Query: 82 -QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
++S + Q V E G VP+FGVC G+Q + G
Sbjct: 65 EENSPRAPQYVFEAG--VPVFGVCYGMQTMAMQLG 97
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
I+++DN + + + + + LG ++ N +EE+K NP+G++ S GP +++G
Sbjct: 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 59
Query: 87 SLQTVLELGP--TVPLFGVCMGLQCIGEAFG 115
+ + VLE VP+ G+C+G Q I + FG
Sbjct: 60 NCEKVLEHYDEFNVPILGICLGHQLIAKFFG 90
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
I+++DN + + + + + LG ++ N +EE+K NP+G++ S GP +++G
Sbjct: 23 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 79
Query: 87 SLQTVLELGP--TVPLFGVCMGLQCIGEAFG 115
+ + VLE VP+ G+C+G Q I + FG
Sbjct: 80 NCEKVLEHYDEFNVPILGICLGHQLIAKFFG 110
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPDDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 G 115
G
Sbjct: 280 G 280
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 G 115
G
Sbjct: 280 G 280
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 382
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 G 115
G
Sbjct: 280 G 280
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGISLGHQLLALAS 279
Query: 115 G 115
G
Sbjct: 280 G 280
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALAS 279
Query: 115 G 115
G
Sbjct: 280 G 280
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 221 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALAS 278
Query: 115 G 115
G
Sbjct: 279 G 279
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
++V+D +T + + + EL F + + +EE+ + P+ +++S GP + D
Sbjct: 2 VLVLDFGSQYTRLIARRLREL-RAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA 60
Query: 87 SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
+PL G+C G+Q + + G
Sbjct: 61 PRPDPRLFSSGLPLLGICYGMQLLAQELG 89
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 33.5 bits (75), Expect = 0.038, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 61 VEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIG 111
++++K N +GV++S GP G+P + LE +P+FG+C G+Q I
Sbjct: 43 LKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLE--KKIPIFGICYGMQEIA 97
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 33.1 bits (74), Expect = 0.047, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS 87
+++D D FT + Q + LG EV + +L R + V++ PGPG P D+G
Sbjct: 450 LIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAV--DLARYDV--VVMGPGPGDPSDAGDP 505
Query: 88 --------LQTVLELGPTVPLFGVCMGLQCIGEAFG 115
L+ +++ G P VC+ Q + G
Sbjct: 506 RIARLYAWLRHLIDEGK--PFMAVCLSHQILNAILG 539
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 33.1 bits (74), Expect = 0.049, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
++V+D +T + + + EL F + + +EE+ + P+ +++S GP + D
Sbjct: 2 VLVLDFGSQYTRLIARRLREL-RAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA 60
Query: 87 SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
+PL G+C G Q + + G
Sbjct: 61 PRPDPRLFSSGLPLLGICYGXQLLAQELG 89
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ 82
+++ I+++D + + + + E+G + E+ D + E ++ NP G+++S GP
Sbjct: 9 HQHRILILDFGSQYAQLIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVT 67
Query: 83 DSGISLQT---VLELGPTVPLFGVCMGLQCIGEAFG 115
S +L+ + E+G P+ G+C G+Q + G
Sbjct: 68 LSH-TLRAPAFIFEIG--CPVLGICYGMQTMAYQLG 100
>pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R75|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R76|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
pdb|3R76|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
Length = 645
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
+++D D FT + Q + LG EV + +L R + V++ PGPG P D+G
Sbjct: 450 LIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAV--DLARYDV--VVMGPGPGDPSDAG 503
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
N+ I+V+D++ L +G LGY + ND + + KN +++S P
Sbjct: 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTA-NDGVDALNVLSKNHIDIVLS-DVNMP 184
Query: 82 QDSGISL-QTVLELGPTVPLFGV 103
G L Q + +LG T+P+ GV
Sbjct: 185 NMDGYRLTQRIRQLGLTLPVIGV 207
>pdb|2CR5|A Chain A, Solution Structure Of The Ubx Domain Of D0h8s2298e
Protein
Length = 109
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92
L +M ++GYH +YR L PR L G + +D GI++ TVL
Sbjct: 49 LLDWMMKVGYHKSLYR--------LSTSFPRRALEVEGGSSLEDIGITVDTVL 93
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
I V+DN +T+ + + ELG ++ ND ++ + G+++S G +
Sbjct: 16 IYVVDNGGQWTHREWRVLRELGVDTKIVPND---IDSSELDGLDGLVLSGGAPNIDEELD 72
Query: 87 SLQTVLEL--GPTVPLFGVCMGLQCIGEAFGDCAFSA 121
L +V + P+ G+C+G Q I FG A
Sbjct: 73 KLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKA 109
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
N+ I+V+D++ L +G LGY + ND + + KN +++S P
Sbjct: 6 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTA-NDGVDALNVLSKNHIDIVLS-DVNMP 63
Query: 82 QDSGISL-QTVLELGPTVPLFGV 103
G L Q + +LG T+P+ GV
Sbjct: 64 NMDGYRLTQRIRQLGLTLPVIGV 86
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 64 LKRKNPRGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
+K + R ++IS GP + +D+ + +G P+ G+C G+Q + + FG
Sbjct: 63 IKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFG 114
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 64 LKRKNPRGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
+K + R ++IS GP + +D+ + +G P+ G+C G+Q + + FG
Sbjct: 68 IKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFG 119
>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3KGF|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3NUD|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUD|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUE|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NUE|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NV8|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3NV8|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3PFP|A Chain A, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
pdb|3PFP|B Chain B, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
Length = 464
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 78 PGAPQDSGISLQTVLELGPTVPLFGVCMGLQ------CIGEAF----GDCA 118
P P D ++++TVLE P V + + LQ GEAF GDCA
Sbjct: 40 PTWPADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCA 90
>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W19|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W1A|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
pdb|2W1A|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
Length = 472
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 78 PGAPQDSGISLQTVLELGPTVPLFGVCMGLQ------CIGEAF----GDCA 118
P P D ++++TVLE P V + + LQ GEAF GDCA
Sbjct: 48 PTWPADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCA 98
>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|3RZI|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|2YPO|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPO|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPP|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPP|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPQ|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
pdb|2YPQ|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
Length = 462
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 78 PGAPQDSGISLQTVLELGPTVPLFGVCMGLQ------CIGEAF----GDCA 118
P P D ++++TVLE P V + + LQ GEAF GDCA
Sbjct: 38 PTWPADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCA 88
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 92 LELGPTVPLFGVCMGLQCIGEAFGDCAFS 120
+ GPT P G C G+QC G+C S
Sbjct: 109 MSFGPTKPGPGKCHGIQCTANINGECPGS 137
>pdb|4GUD|A Chain A, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
pdb|4GUD|B Chain B, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
Length = 211
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
+++ID + ++ + LGY + R+ ++ + K L PG G ++
Sbjct: 5 VVIIDTGCANISSVKFAIERLGYAVTISRDPQVVLAADK-------LFLPGVGTASEAXK 57
Query: 87 SL--QTVLELGPTV--PLFGVCMGLQCIGE 112
+L + ++EL V PL G+C+G Q +G+
Sbjct: 58 NLTERDLIELVKRVEKPLLGICLGXQLLGK 87
>pdb|1KA9|H Chain H, Imidazole Glycerol Phosphate Synthase
Length = 200
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 72 VLISPGPG-------APQDSGISLQTVLELGPTVPLFGVCMGLQCIGE 112
+L+ PG G A Q+SG + L +P G+C+G+Q + E
Sbjct: 43 LLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYE 90
>pdb|3M3P|A Chain A, Crystal Structure Of Glutamine Amido Transferase From
Methylobacillus Flagellatus
Length = 250
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 51 FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-----GPTVPLFGVCM 105
F+V R D + ++ G+ GP + D T+L L VP+ G C+
Sbjct: 31 FQVLRXDRSDPLPAEIRDCSGLAXXGGPXSANDDLPWXPTLLALIRDAVAQRVPVIGHCL 90
Query: 106 GLQCIGEAFGD------CAFSAWCHAWKK 128
G Q + +A G A W AW +
Sbjct: 91 GGQLLAKAXGGEVTDSPHAEIGWVRAWPQ 119
>pdb|1J0A|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0B|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|D Chain D, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|E Chain E, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|F Chain F, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|G Chain G, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|H Chain H, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|I Chain I, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|J Chain J, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|K Chain K, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|L Chain L, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|M Chain M, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|N Chain N, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|O Chain O, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|P Chain P, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|Q Chain Q, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|R Chain R, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|S Chain S, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|T Chain T, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|U Chain U, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|V Chain V, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|W Chain W, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|X Chain X, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
Length = 325
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 51 FEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
FE+ + E EELKR+ + +I PG +P
Sbjct: 131 FELMKYAEEIAEELKREGRKPYVIPPGGASP 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,110,939
Number of Sequences: 62578
Number of extensions: 168798
Number of successful extensions: 554
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 41
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)