Query 032797
Match_columns 133
No_of_seqs 170 out of 1272
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:05:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0512 PabA Anthranilate/para 100.0 6.1E-31 1.3E-35 194.6 12.8 109 24-132 1-109 (191)
2 PRK08007 para-aminobenzoate sy 100.0 2E-29 4.3E-34 187.3 12.4 106 26-131 1-106 (187)
3 PRK06774 para-aminobenzoate sy 100.0 2.3E-29 5.1E-34 186.9 12.4 107 26-132 1-107 (191)
4 PRK07649 para-aminobenzoate/an 100.0 2.1E-28 4.5E-33 183.0 12.5 105 26-130 1-105 (195)
5 TIGR00566 trpG_papA glutamine 100.0 5.1E-28 1.1E-32 179.7 13.0 105 26-130 1-105 (188)
6 PRK05670 anthranilate synthase 100.0 1.6E-27 3.5E-32 176.8 12.7 106 26-131 1-106 (189)
7 CHL00101 trpG anthranilate syn 100.0 1.7E-27 3.6E-32 177.2 12.4 107 26-132 1-107 (190)
8 PRK08857 para-aminobenzoate sy 99.9 3.8E-27 8.3E-32 175.5 12.7 105 26-130 1-105 (193)
9 PLN02335 anthranilate synthase 99.9 1.8E-26 3.8E-31 175.7 13.4 103 21-123 15-117 (222)
10 PRK06895 putative anthranilate 99.9 2E-26 4.4E-31 171.1 13.0 103 25-129 2-104 (190)
11 PRK05637 anthranilate synthase 99.9 5.1E-26 1.1E-30 171.7 12.3 103 25-129 2-104 (208)
12 PRK07765 para-aminobenzoate sy 99.9 1.2E-24 2.5E-29 164.8 12.7 108 25-132 1-111 (214)
13 PRK09522 bifunctional glutamin 99.9 2E-24 4.4E-29 181.8 12.5 108 25-132 2-112 (531)
14 cd01743 GATase1_Anthranilate_S 99.9 5.5E-24 1.2E-28 157.0 12.8 104 27-130 1-104 (184)
15 COG0518 GuaA GMP synthase - Gl 99.9 1.7E-23 3.6E-28 157.0 12.8 106 25-131 2-113 (198)
16 PLN02889 oxo-acid-lyase/anthra 99.9 1.5E-23 3.3E-28 184.1 13.7 107 25-132 82-197 (918)
17 KOG0026 Anthranilate synthase, 99.9 2.1E-23 4.6E-28 151.5 11.7 114 19-132 13-128 (223)
18 PRK14607 bifunctional glutamin 99.9 1.2E-23 2.6E-28 177.3 11.2 107 26-132 1-108 (534)
19 TIGR00888 guaA_Nterm GMP synth 99.9 6.6E-23 1.4E-27 151.8 12.4 103 27-131 1-104 (188)
20 PF00117 GATase: Glutamine ami 99.9 2E-23 4.4E-28 154.1 8.4 101 28-129 1-105 (192)
21 cd01742 GATase1_GMP_Synthase T 99.9 1.7E-22 3.6E-27 148.2 11.3 103 27-131 1-104 (181)
22 PRK00758 GMP synthase subunit 99.9 3E-22 6.4E-27 147.8 11.9 100 26-131 1-101 (184)
23 PLN02347 GMP synthetase 99.9 5.1E-22 1.1E-26 167.4 13.4 106 25-131 11-120 (536)
24 PLN02771 carbamoyl-phosphate s 99.9 5.4E-22 1.2E-26 162.2 12.9 104 25-131 241-344 (415)
25 cd01744 GATase1_CPSase Small c 99.9 4.6E-22 1E-26 146.4 11.1 99 27-128 1-100 (178)
26 COG0505 CarA Carbamoylphosphat 99.9 4.1E-22 8.9E-27 158.8 11.6 106 22-130 177-283 (368)
27 PRK13566 anthranilate synthase 99.9 6.2E-22 1.4E-26 171.4 13.6 110 19-130 521-631 (720)
28 TIGR01815 TrpE-clade3 anthrani 99.9 7.3E-22 1.6E-26 170.9 13.4 107 20-128 512-619 (717)
29 CHL00197 carA carbamoyl-phosph 99.9 1.1E-21 2.5E-26 159.3 13.1 101 24-127 192-293 (382)
30 PRK12838 carbamoyl phosphate s 99.9 1.7E-21 3.8E-26 157.1 12.5 104 23-130 166-270 (354)
31 PRK12564 carbamoyl phosphate s 99.9 1.5E-21 3.3E-26 157.7 12.2 104 24-130 177-281 (360)
32 TIGR01368 CPSaseIIsmall carbam 99.9 2.5E-21 5.3E-26 156.4 11.7 102 25-129 174-275 (358)
33 PRK00074 guaA GMP synthase; Re 99.9 3.3E-21 7.2E-26 161.8 12.8 106 24-131 3-109 (511)
34 PRK06490 glutamine amidotransf 99.9 6E-21 1.3E-25 146.7 12.2 99 22-122 5-111 (239)
35 TIGR01823 PabB-fungal aminodeo 99.9 7.7E-21 1.7E-25 165.3 13.2 110 22-131 3-120 (742)
36 PRK07053 glutamine amidotransf 99.8 3.2E-20 7E-25 142.3 12.4 108 24-131 2-117 (234)
37 PRK05665 amidotransferase; Pro 99.8 1.2E-18 2.7E-23 134.0 11.9 98 24-123 2-117 (240)
38 PRK09065 glutamine amidotransf 99.8 6.3E-19 1.4E-23 135.3 9.6 97 33-131 20-123 (237)
39 PRK08250 glutamine amidotransf 99.8 2E-18 4.4E-23 132.4 12.0 105 25-131 1-118 (235)
40 PRK07567 glutamine amidotransf 99.8 3E-18 6.5E-23 132.0 10.9 105 26-130 3-126 (242)
41 KOG1622 GMP synthase [Nucleoti 99.7 5.4E-18 1.2E-22 138.5 7.3 108 21-131 13-122 (552)
42 PRK13170 hisH imidazole glycer 99.7 2.1E-17 4.5E-22 123.6 9.8 81 25-114 1-87 (196)
43 cd01741 GATase1_1 Subgroup of 99.7 5E-17 1.1E-21 119.9 11.7 103 26-130 1-115 (188)
44 KOG1224 Para-aminobenzoate (PA 99.7 1.4E-17 3E-22 138.5 9.1 113 20-132 10-130 (767)
45 cd01748 GATase1_IGP_Synthase T 99.7 1.9E-17 4.1E-22 123.4 8.0 90 27-123 1-109 (198)
46 PRK13143 hisH imidazole glycer 99.7 1.1E-16 2.5E-21 119.8 10.0 90 25-121 1-107 (200)
47 PRK13146 hisH imidazole glycer 99.7 1.3E-16 2.9E-21 120.3 9.1 92 24-121 1-113 (209)
48 cd01745 GATase1_2 Subgroup of 99.7 1.2E-16 2.6E-21 118.7 8.2 88 33-121 17-124 (189)
49 PRK13181 hisH imidazole glycer 99.7 1.8E-16 4E-21 118.3 8.7 90 26-122 1-108 (199)
50 PRK13527 glutamine amidotransf 99.7 1.9E-16 4.1E-21 118.5 8.3 90 27-120 5-101 (200)
51 PRK13152 hisH imidazole glycer 99.7 5.8E-16 1.3E-20 116.0 10.2 81 26-113 1-89 (201)
52 PRK13141 hisH imidazole glycer 99.7 3E-16 6.5E-21 117.6 8.5 90 26-122 1-109 (205)
53 KOG0370 Multifunctional pyrimi 99.6 1E-15 2.2E-20 133.6 10.4 96 22-123 170-266 (1435)
54 KOG3179 Predicted glutamine sy 99.6 1.7E-15 3.8E-20 113.2 9.2 90 33-124 23-120 (245)
55 TIGR01855 IMP_synth_hisH imida 99.6 1.6E-15 3.5E-20 113.2 8.8 89 27-122 1-108 (196)
56 CHL00188 hisH imidazole glycer 99.6 2.7E-15 5.8E-20 113.5 10.0 90 25-121 2-109 (210)
57 PRK13525 glutamine amidotransf 99.6 6.7E-15 1.5E-19 109.5 9.8 85 25-116 2-91 (189)
58 COG0118 HisH Glutamine amidotr 99.6 4.9E-15 1.1E-19 110.7 9.0 82 24-112 1-89 (204)
59 PRK11366 puuD gamma-glutamyl-g 99.6 5.5E-15 1.2E-19 114.6 9.2 82 39-121 30-131 (254)
60 cd01746 GATase1_CTP_Synthase T 99.6 2.6E-15 5.7E-20 115.3 7.1 90 31-122 14-109 (235)
61 TIGR01737 FGAM_synth_I phospho 99.6 3.8E-14 8.2E-19 108.2 11.9 99 25-128 1-111 (227)
62 PF07722 Peptidase_C26: Peptid 99.5 2.6E-14 5.7E-19 108.4 9.1 84 38-122 27-131 (217)
63 COG2071 Predicted glutamine am 99.5 1.4E-14 2.9E-19 110.9 7.1 82 39-121 30-131 (243)
64 PRK13142 hisH imidazole glycer 99.5 2.6E-14 5.6E-19 106.9 8.4 81 26-114 1-87 (192)
65 PRK14004 hisH imidazole glycer 99.5 5.8E-14 1.3E-18 106.2 9.9 82 27-115 2-90 (210)
66 TIGR00337 PyrG CTP synthase. C 99.5 4.4E-14 9.4E-19 118.6 7.7 102 17-122 282-397 (525)
67 PRK05380 pyrG CTP synthetase; 99.5 9.4E-14 2E-18 116.7 7.1 102 15-119 279-394 (533)
68 PLN02617 imidazole glycerol ph 99.5 6.2E-13 1.3E-17 112.5 10.9 85 23-114 5-96 (538)
69 PRK03619 phosphoribosylformylg 99.4 1.4E-12 3E-17 99.2 11.7 97 25-126 1-110 (219)
70 TIGR03800 PLP_synth_Pdx2 pyrid 99.4 5.9E-13 1.3E-17 98.8 8.1 82 26-114 1-87 (184)
71 cd01749 GATase1_PB Glutamine A 99.4 7.1E-13 1.5E-17 98.0 7.8 81 27-116 3-88 (183)
72 cd01740 GATase1_FGAR_AT Type 1 99.4 1.3E-12 2.9E-17 100.3 9.5 101 27-127 1-114 (238)
73 PRK01175 phosphoribosylformylg 99.4 4.6E-12 1E-16 98.7 9.9 89 23-113 2-105 (261)
74 cd01747 GATase1_Glutamyl_Hydro 99.3 1E-11 2.2E-16 97.4 10.1 81 38-119 23-114 (273)
75 PRK05368 homoserine O-succinyl 99.3 2.7E-11 5.9E-16 96.1 12.6 106 24-129 35-168 (302)
76 PLN02327 CTP synthase 99.3 3.2E-12 6.9E-17 107.9 6.6 102 16-121 289-415 (557)
77 PRK13526 glutamine amidotransf 99.3 1.2E-11 2.6E-16 91.6 8.8 91 25-122 3-103 (179)
78 PRK06186 hypothetical protein; 99.3 4.8E-12 1E-16 96.9 6.6 90 25-118 2-103 (229)
79 PLN02832 glutamine amidotransf 99.3 1E-11 2.2E-16 96.1 7.8 83 25-114 2-89 (248)
80 COG0047 PurL Phosphoribosylfor 99.2 4.7E-11 1E-15 90.7 9.2 95 24-122 2-108 (231)
81 cd01750 GATase1_CobQ Type 1 gl 99.2 6.7E-11 1.5E-15 88.2 7.8 83 27-115 1-90 (194)
82 COG0504 PyrG CTP synthase (UTP 99.1 2.5E-10 5.3E-15 94.9 8.3 98 19-119 283-394 (533)
83 cd03130 GATase1_CobB Type 1 gl 98.9 3.6E-09 7.8E-14 79.2 6.8 72 39-114 15-92 (198)
84 PRK11780 isoprenoid biosynthes 98.9 2.5E-08 5.3E-13 75.9 10.5 91 25-115 2-146 (217)
85 PF13507 GATase_5: CobB/CobQ-l 98.9 2.2E-09 4.7E-14 83.7 4.7 93 24-116 1-111 (259)
86 KOG2387 CTP synthase (UTP-ammo 98.8 3.5E-08 7.5E-13 81.5 8.3 52 68-119 363-414 (585)
87 PRK06278 cobyrinic acid a,c-di 98.7 4.4E-08 9.5E-13 82.2 8.0 79 25-114 1-82 (476)
88 cd01653 GATase1 Type 1 glutami 98.7 1.1E-07 2.4E-12 61.2 8.2 73 38-110 15-92 (115)
89 cd03133 GATase1_ES1 Type 1 glu 98.7 1.2E-07 2.6E-12 72.1 9.4 76 40-115 22-143 (213)
90 cd03131 GATase1_HTS Type 1 glu 98.7 1.7E-08 3.8E-13 74.5 3.4 67 63-129 57-131 (175)
91 cd03169 GATase1_PfpI_1 Type 1 98.6 1.6E-07 3.5E-12 68.7 8.1 46 68-113 76-124 (180)
92 KOG0623 Glutamine amidotransfe 98.6 1.7E-07 3.6E-12 75.7 8.7 92 26-127 3-101 (541)
93 PRK00784 cobyric acid synthase 98.6 7.9E-08 1.7E-12 80.8 7.2 85 24-114 251-342 (488)
94 cd03128 GAT_1 Type 1 glutamine 98.6 3.6E-07 7.8E-12 56.3 6.9 73 38-110 15-92 (92)
95 TIGR01382 PfpI intracellular p 98.6 3.2E-07 6.8E-12 65.9 7.5 75 39-113 17-108 (166)
96 PLN03206 phosphoribosylformylg 98.5 5.4E-07 1.2E-11 83.0 10.1 90 22-113 1035-1142(1307)
97 TIGR01857 FGAM-synthase phosph 98.5 7.6E-07 1.6E-11 81.6 10.6 92 22-113 975-1090(1239)
98 PRK01077 cobyrinic acid a,c-di 98.5 5.6E-07 1.2E-11 75.0 8.8 86 24-114 245-339 (451)
99 TIGR01735 FGAM_synt phosphorib 98.5 7.1E-07 1.5E-11 82.4 9.6 92 22-113 1053-1160(1310)
100 PRK05297 phosphoribosylformylg 98.5 1E-06 2.2E-11 81.4 10.0 89 23-113 1034-1140(1290)
101 cd03134 GATase1_PfpI_like A ty 98.5 1.1E-06 2.3E-11 63.1 7.9 74 40-113 18-110 (165)
102 cd03147 GATase1_Ydr533c_like T 98.4 1.6E-06 3.6E-11 66.5 8.4 47 67-113 93-143 (231)
103 cd03132 GATase1_catalase Type 98.4 3E-06 6.6E-11 59.5 9.1 89 25-113 2-111 (142)
104 COG0693 ThiJ Putative intracel 98.4 2.3E-06 5E-11 62.8 8.1 91 24-114 2-116 (188)
105 PRK11574 oxidative-stress-resi 98.4 5.4E-06 1.2E-10 61.3 10.0 89 24-113 2-115 (196)
106 TIGR00379 cobB cobyrinic acid 98.3 1.9E-06 4E-11 71.9 7.4 86 24-114 244-338 (449)
107 cd03146 GAT1_Peptidase_E Type 98.3 1.4E-06 3E-11 65.8 6.0 88 22-113 29-130 (212)
108 TIGR00313 cobQ cobyric acid sy 98.2 1.4E-06 3E-11 73.2 4.6 83 25-114 248-336 (475)
109 PRK04155 chaperone protein Hch 98.2 5.3E-06 1.2E-10 65.6 7.7 48 66-113 145-196 (287)
110 cd03148 GATase1_EcHsp31_like T 98.2 8.5E-06 1.9E-10 62.6 8.5 47 67-113 95-145 (232)
111 cd03140 GATase1_PfpI_3 Type 1 98.2 8.1E-06 1.7E-10 59.2 7.8 75 39-113 16-107 (170)
112 cd03135 GATase1_DJ-1 Type 1 gl 98.2 9.2E-06 2E-10 57.8 8.0 75 39-113 16-109 (163)
113 PHA03366 FGAM-synthase; Provis 98.2 1.2E-05 2.6E-10 74.5 10.4 91 21-112 1025-1132(1304)
114 PF07685 GATase_3: CobB/CobQ-l 98.2 1.3E-06 2.9E-11 63.1 3.1 48 68-115 7-60 (158)
115 TIGR01739 tegu_FGAM_synt herpe 98.1 1.6E-05 3.5E-10 73.2 10.0 89 22-112 927-1033(1202)
116 cd03141 GATase1_Hsp31_like Typ 98.1 1.3E-05 2.9E-10 60.8 7.3 48 67-114 89-140 (221)
117 PRK13896 cobyrinic acid a,c-di 98.1 1.3E-05 2.7E-10 66.8 7.2 85 25-114 234-325 (433)
118 COG0311 PDX2 Predicted glutami 98.0 2.6E-05 5.6E-10 58.0 6.7 83 25-114 1-89 (194)
119 TIGR01383 not_thiJ DJ-1 family 98.0 3.8E-05 8.3E-10 55.6 7.2 74 40-113 18-112 (179)
120 COG1492 CobQ Cobyric acid synt 97.9 3.1E-05 6.8E-10 65.0 6.9 84 23-114 250-342 (486)
121 PF01965 DJ-1_PfpI: DJ-1/PfpI 97.9 4.9E-06 1.1E-10 59.0 1.2 54 60-113 29-87 (147)
122 cd03137 GATase1_AraC_1 AraC tr 97.9 8E-05 1.7E-09 54.3 7.6 47 67-113 63-112 (187)
123 cd03144 GATase1_ScBLP_like Typ 97.9 3.2E-05 6.9E-10 53.4 5.1 52 67-119 43-98 (114)
124 PF01174 SNO: SNO glutamine am 97.9 8.8E-06 1.9E-10 60.6 2.4 69 40-114 11-85 (188)
125 PRK11249 katE hydroperoxidase 97.8 6.5E-05 1.4E-09 66.2 7.9 92 22-113 595-707 (752)
126 PF04204 HTS: Homoserine O-suc 97.7 0.00012 2.6E-09 58.2 6.5 113 18-130 27-168 (298)
127 TIGR01001 metA homoserine O-su 97.6 0.00051 1.1E-08 54.6 8.9 112 18-129 28-168 (300)
128 cd03139 GATase1_PfpI_2 Type 1 97.6 0.00048 1E-08 49.9 8.1 46 68-113 62-110 (183)
129 PRK05282 (alpha)-aspartyl dipe 97.6 0.00015 3.3E-09 55.8 5.3 91 23-115 30-131 (233)
130 KOG2764 Putative transcription 97.5 0.00043 9.4E-09 53.2 6.8 72 40-111 24-114 (247)
131 COG3442 Predicted glutamine am 97.5 0.00012 2.5E-09 56.0 3.4 72 39-113 25-103 (250)
132 cd03138 GATase1_AraC_2 AraC tr 97.3 0.00056 1.2E-08 50.3 5.2 46 68-113 69-120 (195)
133 KOG3210 Imidazoleglycerol-phos 97.2 0.0019 4.2E-08 47.7 7.5 95 18-116 4-110 (226)
134 PRK09393 ftrA transcriptional 97.2 0.004 8.6E-08 49.4 9.2 47 67-113 74-122 (322)
135 COG1797 CobB Cobyrinic acid a, 97.1 0.0024 5.2E-08 53.2 7.3 96 15-114 236-340 (451)
136 PF13278 DUF4066: Putative ami 96.9 0.0013 2.8E-08 47.1 4.0 47 67-113 60-109 (166)
137 cd03136 GATase1_AraC_ArgR_like 96.9 0.0021 4.5E-08 46.9 5.1 46 68-113 64-111 (185)
138 KOG1559 Gamma-glutamyl hydrola 96.8 0.0037 8.1E-08 48.8 5.8 75 39-114 81-164 (340)
139 cd03129 GAT1_Peptidase_E_like 96.8 0.0063 1.4E-07 45.6 6.9 91 23-113 28-130 (210)
140 COG1897 MetA Homoserine trans- 95.8 0.06 1.3E-06 42.3 7.8 109 16-124 26-163 (307)
141 PRK04539 ppnK inorganic polyph 95.8 0.13 2.8E-06 41.0 9.9 76 25-107 6-102 (296)
142 COG3340 PepE Peptidase E [Amin 95.5 0.071 1.5E-06 40.7 7.0 83 24-108 32-129 (224)
143 PRK01911 ppnK inorganic polyph 95.4 0.14 3.1E-06 40.7 8.8 76 25-107 1-98 (292)
144 PRK03708 ppnK inorganic polyph 95.4 0.12 2.6E-06 40.8 8.3 77 25-107 1-90 (277)
145 PRK11104 hemG protoporphyrinog 95.4 0.21 4.6E-06 36.6 9.0 80 25-107 1-88 (177)
146 PRK02155 ppnK NAD(+)/NADH kina 95.3 0.25 5.4E-06 39.2 9.9 76 25-107 6-97 (291)
147 PF09825 BPL_N: Biotin-protein 95.3 0.055 1.2E-06 44.4 6.2 85 25-112 1-97 (367)
148 KOG1907 Phosphoribosylformylgl 95.1 0.076 1.6E-06 48.1 6.8 91 22-112 1056-1162(1320)
149 PRK03372 ppnK inorganic polyph 94.9 0.28 6E-06 39.3 9.1 76 25-107 6-106 (306)
150 PRK03378 ppnK inorganic polyph 94.8 0.39 8.5E-06 38.1 9.7 76 25-107 6-97 (292)
151 cd00886 MogA_MoaB MogA_MoaB fa 94.5 0.56 1.2E-05 33.4 9.0 47 33-79 18-72 (152)
152 TIGR02069 cyanophycinase cyano 94.3 0.17 3.7E-06 39.3 6.5 93 21-113 25-132 (250)
153 cd03145 GAT1_cyanophycinase Ty 94.0 0.36 7.8E-06 36.5 7.6 92 22-113 27-133 (217)
154 PRK02649 ppnK inorganic polyph 93.9 0.56 1.2E-05 37.6 8.7 75 26-107 3-102 (305)
155 PRK14077 pnk inorganic polypho 93.8 0.6 1.3E-05 37.1 8.8 77 24-107 10-98 (287)
156 TIGR02667 moaB_proteo molybden 93.7 0.9 1.9E-05 32.9 8.8 62 23-84 3-80 (163)
157 COG4635 HemG Flavodoxin [Energ 93.5 0.34 7.3E-06 35.6 6.2 80 25-107 1-89 (175)
158 PLN02929 NADH kinase 93.3 0.41 8.9E-06 38.3 7.0 59 39-106 38-96 (301)
159 smart00852 MoCF_biosynth Proba 92.8 0.59 1.3E-05 32.4 6.5 60 33-93 16-81 (135)
160 PF03575 Peptidase_S51: Peptid 92.7 0.067 1.5E-06 38.1 1.6 72 37-110 2-82 (154)
161 PF00072 Response_reg: Respons 92.6 0.26 5.7E-06 31.8 4.3 77 27-104 1-78 (112)
162 PRK01231 ppnK inorganic polyph 92.6 1.2 2.6E-05 35.4 8.8 75 26-107 6-96 (295)
163 PRK05569 flavodoxin; Provision 92.5 2.5 5.4E-05 29.1 10.3 76 26-104 3-90 (141)
164 COG4090 Uncharacterized protei 92.4 0.34 7.3E-06 34.5 4.8 37 68-105 85-124 (154)
165 PRK04885 ppnK inorganic polyph 92.4 0.7 1.5E-05 36.3 7.1 64 25-107 1-71 (265)
166 PRK02645 ppnK inorganic polyph 92.4 1.2 2.6E-05 35.6 8.5 75 25-105 4-89 (305)
167 PRK14076 pnk inorganic polypho 92.0 1.2 2.6E-05 38.5 8.7 80 22-107 288-382 (569)
168 PRK14075 pnk inorganic polypho 92.0 1.2 2.6E-05 34.6 7.9 70 25-107 1-72 (256)
169 PF09897 DUF2124: Uncharacteri 91.8 0.071 1.5E-06 38.4 0.9 82 23-105 18-119 (147)
170 COG3155 ElbB Uncharacterized p 91.0 0.4 8.6E-06 35.5 4.1 53 67-119 84-150 (217)
171 PRK02231 ppnK inorganic polyph 90.9 1.3 2.7E-05 35.0 7.1 62 38-106 3-75 (272)
172 COG4977 Transcriptional regula 90.5 0.57 1.2E-05 38.0 5.0 46 68-113 76-124 (328)
173 PRK00561 ppnK inorganic polyph 90.4 1.3 2.9E-05 34.7 6.8 66 25-107 1-67 (259)
174 PRK06703 flavodoxin; Provision 90.2 3.4 7.3E-05 28.9 8.3 48 25-74 2-54 (151)
175 PF06490 FleQ: Flagellar regul 90.0 0.6 1.3E-05 31.6 4.1 76 26-104 1-76 (109)
176 TIGR01754 flav_RNR ribonucleot 90.0 3.5 7.5E-05 28.6 8.1 77 25-104 1-90 (140)
177 PRK09468 ompR osmolarity respo 89.9 2.7 5.8E-05 30.8 7.9 82 22-105 3-85 (239)
178 PLN02935 Bifunctional NADH kin 89.4 3.5 7.5E-05 35.4 9.0 78 24-107 194-296 (508)
179 PRK10816 DNA-binding transcrip 89.0 2.7 5.8E-05 30.4 7.3 79 25-105 1-80 (223)
180 cd00758 MoCF_BD MoCF_BD: molyb 88.9 1.5 3.4E-05 30.3 5.6 46 34-79 18-69 (133)
181 PLN02727 NAD kinase 88.7 3.3 7.1E-05 38.1 8.7 79 22-107 676-777 (986)
182 PRK01185 ppnK inorganic polyph 88.6 3.1 6.7E-05 32.8 7.7 73 25-106 1-82 (271)
183 CHL00148 orf27 Ycf27; Reviewed 88.5 4 8.7E-05 29.7 7.9 82 21-105 3-85 (240)
184 PRK01372 ddl D-alanine--D-alan 88.2 4.6 0.0001 31.4 8.5 54 22-75 2-63 (304)
185 PF06283 ThuA: Trehalose utili 88.2 2 4.4E-05 32.0 6.2 78 40-120 24-111 (217)
186 TIGR00177 molyb_syn molybdenum 87.9 3.2 6.9E-05 29.2 6.8 46 34-79 26-77 (144)
187 cd00885 cinA Competence-damage 87.7 3.6 7.8E-05 30.0 7.1 46 34-79 18-69 (170)
188 PRK05568 flavodoxin; Provision 87.7 7 0.00015 26.8 10.5 77 26-105 3-90 (142)
189 PRK01215 competence damage-ind 87.6 4.8 0.0001 31.5 8.2 43 35-79 23-73 (264)
190 PRK10336 DNA-binding transcrip 87.1 4.3 9.4E-05 29.0 7.3 78 25-104 1-79 (219)
191 PRK14690 molybdopterin biosynt 86.5 6.5 0.00014 32.8 8.8 58 22-79 191-270 (419)
192 PRK11083 DNA-binding response 86.4 6.3 0.00014 28.2 7.8 80 24-105 3-83 (228)
193 PRK09836 DNA-binding transcrip 86.1 4.9 0.00011 29.1 7.2 78 25-104 1-79 (227)
194 PF01513 NAD_kinase: ATP-NAD k 86.0 1.9 4.1E-05 33.8 5.2 36 66-107 74-110 (285)
195 KOG1467 Translation initiation 85.7 4.6 9.9E-05 34.6 7.5 87 18-109 379-473 (556)
196 TIGR01755 flav_wrbA NAD(P)H:qu 85.1 13 0.00029 27.4 9.4 94 25-121 1-142 (197)
197 PRK03673 hypothetical protein; 84.6 6.4 0.00014 32.7 7.9 45 35-79 21-71 (396)
198 COG0303 MoeA Molybdopterin bio 84.3 3.8 8.2E-05 34.1 6.4 70 22-92 174-265 (404)
199 TIGR00200 cinA_nterm competenc 84.3 6.2 0.00013 32.9 7.7 46 34-79 19-70 (413)
200 PRK10161 transcriptional regul 84.2 7.5 0.00016 28.1 7.4 79 24-104 2-83 (229)
201 COG2185 Sbm Methylmalonyl-CoA 83.8 7.1 0.00015 28.0 6.8 72 22-94 10-90 (143)
202 COG0521 MoaB Molybdopterin bio 83.8 12 0.00026 27.6 8.2 47 38-84 30-84 (169)
203 PF03698 UPF0180: Uncharacteri 83.7 3.2 7E-05 26.8 4.6 45 26-80 3-47 (80)
204 PRK06242 flavodoxin; Provision 83.7 7.8 0.00017 26.8 7.0 75 25-104 1-81 (150)
205 PRK13435 response regulator; P 83.3 7.5 0.00016 26.2 6.7 87 21-108 2-89 (145)
206 PRK15029 arginine decarboxylas 82.6 7.2 0.00016 35.1 7.8 78 25-104 1-92 (755)
207 PRK00549 competence damage-ind 82.5 10 0.00022 31.6 8.2 44 34-79 19-70 (414)
208 PRK12359 flavodoxin FldB; Prov 82.5 12 0.00027 27.3 7.9 51 25-78 1-54 (172)
209 PRK09271 flavodoxin; Provision 82.4 15 0.00033 26.1 9.0 53 25-78 1-60 (160)
210 COG0429 Predicted hydrolase of 82.3 8.3 0.00018 31.5 7.4 80 32-117 88-169 (345)
211 PRK10643 DNA-binding transcrip 82.3 8.6 0.00019 27.4 7.0 78 25-104 1-79 (222)
212 smart00448 REC cheY-homologous 82.2 3.2 6.9E-05 21.0 3.7 50 25-74 1-50 (55)
213 cd03522 MoeA_like MoeA_like. T 82.2 19 0.0004 29.0 9.4 60 20-79 155-230 (312)
214 cd06284 PBP1_LacI_like_6 Ligan 82.0 7.1 0.00015 28.8 6.7 59 39-104 20-84 (267)
215 PRK10355 xylF D-xylose transpo 81.9 6.7 0.00015 31.0 6.8 76 22-103 23-112 (330)
216 PRK09267 flavodoxin FldA; Vali 81.8 16 0.00035 25.9 8.9 79 25-106 2-89 (169)
217 PRK03670 competence damage-ind 81.7 13 0.00028 29.0 8.1 45 35-79 20-71 (252)
218 cd06292 PBP1_LacI_like_10 Liga 81.6 11 0.00024 28.0 7.7 63 39-103 20-89 (273)
219 PRK09417 mogA molybdenum cofac 81.5 7 0.00015 29.2 6.4 50 35-84 23-83 (193)
220 PRK03501 ppnK inorganic polyph 81.2 12 0.00026 29.4 7.8 64 26-106 4-74 (264)
221 cd06305 PBP1_methylthioribose_ 80.7 7.8 0.00017 28.8 6.5 37 40-77 21-64 (273)
222 PRK10766 DNA-binding transcrip 80.6 15 0.00032 26.4 7.8 78 24-104 2-80 (221)
223 PRK03767 NAD(P)H:quinone oxido 80.5 20 0.00044 26.3 9.5 32 25-56 2-39 (200)
224 PF09075 STb_secrete: Heat-sta 80.4 0.34 7.4E-06 27.3 -0.8 17 99-115 31-47 (48)
225 PF00994 MoCF_biosynth: Probab 80.2 2.8 6E-05 29.3 3.6 43 34-79 16-67 (144)
226 PRK15479 transcriptional regul 80.2 15 0.00032 26.1 7.6 78 25-104 1-79 (221)
227 COG1058 CinA Predicted nucleot 80.1 12 0.00025 29.4 7.4 45 35-79 21-71 (255)
228 TIGR02154 PhoB phosphate regul 80.0 13 0.00028 26.4 7.3 79 24-104 2-83 (226)
229 COG4126 Hydantoin racemase [Am 79.8 4.7 0.0001 31.1 4.9 45 68-119 69-113 (230)
230 TIGR03787 marine_sort_RR prote 79.2 14 0.0003 26.6 7.3 79 26-104 2-81 (227)
231 PRK09390 fixJ response regulat 79.2 18 0.00039 24.9 7.9 80 24-104 3-82 (202)
232 PRK03094 hypothetical protein; 79.1 7.1 0.00015 25.3 4.9 37 38-80 11-47 (80)
233 COG4285 Uncharacterized conser 79.1 7.9 0.00017 30.0 5.9 47 68-119 49-99 (253)
234 TIGR00147 lipid kinase, YegS/R 79.0 25 0.00055 27.2 9.1 85 25-115 2-102 (293)
235 PF12724 Flavodoxin_5: Flavodo 79.0 5.9 0.00013 27.6 5.0 71 31-105 5-83 (143)
236 PRK13558 bacterio-opsin activa 79.0 11 0.00024 32.5 7.6 81 22-104 5-86 (665)
237 PRK04761 ppnK inorganic polyph 78.9 3.7 8E-05 31.9 4.2 34 68-107 25-59 (246)
238 cd06310 PBP1_ABC_sugar_binding 78.9 21 0.00046 26.5 8.4 38 40-77 21-66 (273)
239 PF02056 Glyco_hydro_4: Family 78.4 3.6 7.7E-05 30.6 3.9 26 89-114 152-177 (183)
240 PRK11914 diacylglycerol kinase 78.4 20 0.00043 28.1 8.4 59 23-81 7-77 (306)
241 COG0061 nadF NAD kinase [Coenz 78.3 20 0.00044 28.1 8.3 63 39-107 20-89 (281)
242 PRK10365 transcriptional regul 78.0 17 0.00036 29.7 8.1 80 23-104 4-84 (441)
243 PRK14498 putative molybdopteri 78.0 19 0.00042 31.3 8.9 58 22-79 184-263 (633)
244 PLN03029 type-a response regul 77.7 14 0.0003 27.7 7.0 34 21-54 5-38 (222)
245 PRK03604 moaC bifunctional mol 77.7 13 0.00028 30.0 7.1 51 34-84 174-232 (312)
246 cd06301 PBP1_rhizopine_binding 77.6 19 0.0004 26.8 7.7 37 40-77 21-65 (272)
247 COG0745 OmpR Response regulato 77.5 3.9 8.4E-05 31.2 4.0 79 25-106 1-81 (229)
248 PRK06756 flavodoxin; Provision 77.3 21 0.00046 24.7 8.9 78 25-105 2-91 (148)
249 PRK15408 autoinducer 2-binding 77.2 13 0.00028 29.7 7.1 55 22-76 21-88 (336)
250 KOG4180 Predicted kinase [Gene 77.2 3.6 7.8E-05 33.6 3.8 57 39-103 79-135 (395)
251 PF12641 Flavodoxin_3: Flavodo 77.2 18 0.0004 26.1 7.3 73 29-105 3-77 (160)
252 COG1184 GCD2 Translation initi 76.9 17 0.00038 29.2 7.6 89 15-108 136-232 (301)
253 PRK14491 putative bifunctional 76.8 27 0.00058 30.6 9.3 58 22-79 365-444 (597)
254 PF03358 FMN_red: NADPH-depend 76.7 6.9 0.00015 27.1 4.8 81 25-106 1-115 (152)
255 PRK10841 hybrid sensory kinase 76.7 13 0.00028 34.0 7.7 82 22-105 799-881 (924)
256 PRK10680 molybdopterin biosynt 76.3 13 0.00028 30.9 7.1 58 22-79 175-254 (411)
257 cd00887 MoeA MoeA family. Memb 76.1 12 0.00027 30.7 6.9 45 35-79 195-245 (394)
258 PRK14497 putative molybdopteri 76.1 7.1 0.00015 33.8 5.6 44 36-79 207-256 (546)
259 cd02067 B12-binding B12 bindin 76.1 15 0.00034 24.4 6.3 62 39-101 18-85 (119)
260 PRK13837 two-component VirA-li 76.0 16 0.00035 32.7 8.0 82 22-107 695-779 (828)
261 PRK10710 DNA-binding transcrip 75.9 26 0.00055 25.3 7.9 79 24-105 10-89 (240)
262 PRK09958 DNA-binding transcrip 75.8 15 0.00033 25.9 6.5 77 25-103 1-79 (204)
263 cd06320 PBP1_allose_binding Pe 75.8 28 0.00061 25.9 8.3 59 40-103 21-88 (275)
264 cd01425 RPS2 Ribosomal protein 75.7 25 0.00054 26.0 7.8 76 23-105 55-158 (193)
265 PRK11173 two-component respons 75.6 21 0.00046 26.0 7.5 78 24-104 3-81 (237)
266 cd06318 PBP1_ABC_sugar_binding 74.8 12 0.00026 28.0 6.0 37 39-76 20-63 (282)
267 PRK15115 response regulator Gl 74.6 24 0.00053 28.8 8.3 82 22-105 3-85 (444)
268 cd06312 PBP1_ABC_sugar_binding 74.2 22 0.00047 26.6 7.4 60 40-104 22-89 (271)
269 PRK13054 lipid kinase; Reviewe 74.1 21 0.00045 28.0 7.4 57 24-80 3-68 (300)
270 cd06309 PBP1_YtfQ_like Peripla 73.9 19 0.00042 26.8 7.0 40 38-77 19-64 (273)
271 cd06319 PBP1_ABC_sugar_binding 73.6 15 0.00033 27.3 6.3 37 40-77 21-64 (277)
272 COG1597 LCB5 Sphingosine kinas 73.6 28 0.00062 27.6 8.1 43 39-81 24-71 (301)
273 cd01541 PBP1_AraR Ligand-bindi 73.5 16 0.00035 27.2 6.5 40 39-78 20-65 (273)
274 cd01574 PBP1_LacI Ligand-bindi 73.5 29 0.00063 25.5 7.8 39 39-77 20-65 (264)
275 COG1609 PurR Transcriptional r 73.3 23 0.0005 28.2 7.6 37 39-76 79-122 (333)
276 cd06300 PBP1_ABC_sugar_binding 72.8 14 0.00031 27.4 6.1 37 40-77 21-69 (272)
277 PRK11361 acetoacetate metaboli 72.3 27 0.00059 28.6 8.0 79 24-104 4-83 (457)
278 PRK10923 glnG nitrogen regulat 72.1 28 0.00062 28.7 8.1 79 24-104 3-82 (469)
279 cd03142 GATase1_ThuA Type 1 gl 72.0 41 0.00089 25.6 8.4 82 34-117 22-110 (215)
280 PRK11517 transcriptional regul 71.8 7.3 0.00016 27.9 4.1 77 25-104 1-78 (223)
281 cd06316 PBP1_ABC_sugar_binding 71.8 20 0.00042 27.3 6.7 37 40-76 21-64 (294)
282 cd01538 PBP1_ABC_xylose_bindin 71.6 35 0.00076 25.9 8.1 59 39-103 20-86 (288)
283 PRK07239 bifunctional uroporph 71.2 34 0.00075 27.7 8.3 97 19-121 6-122 (381)
284 cd05014 SIS_Kpsf KpsF-like pro 70.9 23 0.0005 23.5 6.2 79 26-107 2-84 (128)
285 TIGR02634 xylF D-xylose ABC tr 70.9 18 0.00039 27.9 6.4 40 37-76 17-62 (302)
286 PRK06849 hypothetical protein; 70.8 33 0.00071 27.8 8.1 55 23-78 3-57 (389)
287 cd06299 PBP1_LacI_like_13 Liga 70.7 21 0.00047 26.3 6.6 39 39-77 20-64 (265)
288 PRK15347 two component system 70.3 24 0.00053 31.4 7.8 81 23-105 689-774 (921)
289 cd01540 PBP1_arabinose_binding 70.1 15 0.00032 27.7 5.6 39 39-77 20-63 (289)
290 KOG1838 Alpha/beta hydrolase [ 70.0 24 0.00051 29.6 7.0 102 10-117 107-219 (409)
291 cd06273 PBP1_GntR_like_1 This 70.0 27 0.00059 25.7 7.0 57 39-103 20-84 (268)
292 PF13407 Peripla_BP_4: Peripla 69.9 30 0.00065 25.5 7.2 61 40-106 20-89 (257)
293 cd01545 PBP1_SalR Ligand-bindi 69.6 17 0.00038 26.8 5.9 39 39-77 20-65 (270)
294 cd01451 vWA_Magnesium_chelatas 69.6 25 0.00054 25.1 6.5 54 70-123 101-166 (178)
295 TIGR01753 flav_short flavodoxi 69.5 31 0.00068 23.1 9.6 45 31-78 6-54 (140)
296 PRK14569 D-alanyl-alanine synt 69.4 52 0.0011 25.7 9.2 51 24-74 3-62 (296)
297 PRK09191 two-component respons 69.4 31 0.00068 25.6 7.2 81 22-105 135-218 (261)
298 PRK00421 murC UDP-N-acetylmura 68.8 61 0.0013 26.9 9.4 57 22-78 5-76 (461)
299 PRK11091 aerobic respiration c 68.3 26 0.00056 30.9 7.4 83 22-106 523-609 (779)
300 PRK13055 putative lipid kinase 68.2 60 0.0013 25.9 9.4 57 25-81 3-72 (334)
301 PRK04020 rps2P 30S ribosomal p 68.0 25 0.00054 26.7 6.3 74 24-104 67-144 (204)
302 cd06295 PBP1_CelR Ligand bindi 67.8 21 0.00047 26.5 6.1 57 40-103 32-93 (275)
303 PRK10701 DNA-binding transcrip 67.5 36 0.00078 24.8 7.1 77 25-104 2-79 (240)
304 TIGR01012 Sa_S2_E_A ribosomal 67.5 23 0.00049 26.7 6.0 75 24-105 61-139 (196)
305 COG0771 MurD UDP-N-acetylmuram 67.4 52 0.0011 27.9 8.7 33 22-55 5-37 (448)
306 PF09822 ABC_transp_aux: ABC-t 67.3 35 0.00075 26.2 7.2 71 22-99 144-227 (271)
307 PF00455 DeoRC: DeoR C termina 66.8 18 0.00038 25.9 5.2 79 24-104 19-101 (161)
308 COG1454 EutG Alcohol dehydroge 66.7 35 0.00076 28.2 7.4 62 25-87 30-104 (377)
309 COG2204 AtoC Response regulato 66.6 28 0.0006 29.7 6.9 79 24-104 4-83 (464)
310 cd03332 LMO_FMN L-Lactate 2-mo 66.6 72 0.0016 26.5 9.2 84 35-120 239-335 (383)
311 PF02310 B12-binding: B12 bind 66.6 27 0.00059 22.9 5.8 50 26-76 2-59 (121)
312 PRK10423 transcriptional repre 66.5 33 0.00071 26.4 7.0 38 40-77 78-121 (327)
313 cd06321 PBP1_ABC_sugar_binding 66.3 43 0.00093 24.8 7.4 58 40-103 21-88 (271)
314 cd01575 PBP1_GntR Ligand-bindi 66.1 38 0.00082 24.8 7.1 59 39-103 20-84 (268)
315 cd06277 PBP1_LacI_like_1 Ligan 66.0 19 0.00041 26.7 5.4 38 40-77 24-67 (268)
316 PLN02493 probable peroxisomal 65.8 76 0.0016 26.2 9.5 83 36-120 211-306 (367)
317 cd06296 PBP1_CatR_like Ligand- 65.8 44 0.00094 24.7 7.4 58 39-103 20-84 (270)
318 TIGR00640 acid_CoA_mut_C methy 65.3 37 0.00079 23.7 6.4 41 37-78 19-63 (132)
319 cd06279 PBP1_LacI_like_3 Ligan 65.1 20 0.00044 27.0 5.5 38 40-77 26-65 (283)
320 cd06287 PBP1_LacI_like_8 Ligan 65.1 28 0.00062 26.3 6.3 37 39-76 28-64 (269)
321 COG1031 Uncharacterized Fe-S o 65.0 29 0.00063 29.8 6.6 76 25-102 1-103 (560)
322 cd06298 PBP1_CcpA_like Ligand- 65.0 29 0.00063 25.5 6.2 38 40-77 21-64 (268)
323 cd06322 PBP1_ABC_sugar_binding 64.9 24 0.00053 26.1 5.8 38 39-77 20-64 (267)
324 PRK01390 murD UDP-N-acetylmura 64.6 56 0.0012 27.1 8.4 56 23-79 8-76 (460)
325 PRK07308 flavodoxin; Validated 64.4 44 0.00096 23.0 8.2 50 26-78 3-57 (146)
326 PRK10529 DNA-binding transcrip 64.3 12 0.00027 26.8 4.0 51 25-75 2-52 (225)
327 COG0426 FpaA Uncharacterized f 64.1 75 0.0016 26.5 8.8 59 18-78 241-306 (388)
328 PF02882 THF_DHG_CYH_C: Tetrah 63.7 54 0.0012 23.8 7.4 57 20-77 32-88 (160)
329 cd06274 PBP1_FruR Ligand bindi 63.2 38 0.00082 25.0 6.6 39 39-77 20-64 (264)
330 TIGR02990 ectoine_eutA ectoine 63.2 52 0.0011 25.3 7.4 76 22-103 118-212 (239)
331 PRK11921 metallo-beta-lactamas 63.2 29 0.00062 28.4 6.3 54 24-78 247-309 (394)
332 cd06323 PBP1_ribose_binding Pe 63.2 23 0.00049 26.1 5.4 58 40-103 21-86 (268)
333 cd06314 PBP1_tmGBP Periplasmic 63.1 40 0.00087 25.1 6.8 38 40-77 20-64 (271)
334 PRK11107 hybrid sensory histid 63.1 40 0.00086 30.0 7.7 81 22-104 665-748 (919)
335 cd06306 PBP1_TorT-like TorT-li 63.0 61 0.0013 24.2 8.5 58 40-103 21-87 (268)
336 PRK10703 DNA-binding transcrip 62.9 49 0.0011 25.6 7.4 54 23-77 58-124 (341)
337 cd06281 PBP1_LacI_like_5 Ligan 62.8 47 0.001 24.6 7.1 39 39-77 20-64 (269)
338 PF10087 DUF2325: Uncharacteri 62.7 39 0.00085 21.9 8.6 84 26-113 1-92 (97)
339 PRK14571 D-alanyl-alanine synt 62.7 64 0.0014 25.0 8.0 50 25-74 1-59 (299)
340 TIGR01387 cztR_silR_copR heavy 62.7 40 0.00087 23.7 6.5 76 27-104 1-77 (218)
341 PF02601 Exonuc_VII_L: Exonucl 62.4 67 0.0014 25.3 8.2 80 22-101 12-111 (319)
342 cd08185 Fe-ADH1 Iron-containin 62.2 51 0.0011 26.8 7.6 61 25-86 26-100 (380)
343 cd06297 PBP1_LacI_like_12 Liga 62.0 34 0.00074 25.5 6.2 39 39-77 20-64 (269)
344 PRK09701 D-allose transporter 62.0 71 0.0015 24.7 8.2 52 26-77 26-91 (311)
345 TIGR02956 TMAO_torS TMAO reduc 62.0 35 0.00077 30.6 7.2 81 23-105 701-785 (968)
346 PRK10610 chemotaxis regulatory 61.5 19 0.0004 22.3 4.1 82 22-105 3-88 (129)
347 PRK09483 response regulator; P 61.2 50 0.0011 23.4 6.7 78 25-104 2-82 (217)
348 cd05212 NAD_bind_m-THF_DH_Cycl 61.1 53 0.0011 23.2 6.6 57 20-77 24-80 (140)
349 cd08183 Fe-ADH2 Iron-containin 60.9 51 0.0011 26.7 7.4 62 24-86 22-92 (374)
350 cd06315 PBP1_ABC_sugar_binding 60.5 54 0.0012 24.7 7.1 37 40-77 22-65 (280)
351 cd01539 PBP1_GGBP Periplasmic 60.1 33 0.00072 26.3 6.0 59 40-103 21-88 (303)
352 cd06313 PBP1_ABC_sugar_binding 60.1 63 0.0014 24.2 7.4 37 39-76 20-63 (272)
353 cd08179 NADPH_BDH NADPH-depend 59.4 72 0.0016 25.9 8.0 62 25-87 24-99 (375)
354 cd01536 PBP1_ABC_sugar_binding 59.4 46 0.00099 24.2 6.4 38 40-77 21-64 (267)
355 cd06282 PBP1_GntR_like_2 Ligan 59.2 38 0.00083 24.8 6.0 60 39-104 20-86 (266)
356 cd01542 PBP1_TreR_like Ligand- 59.1 44 0.00096 24.4 6.3 38 40-77 21-64 (259)
357 PRK01368 murD UDP-N-acetylmura 58.6 1.1E+02 0.0023 25.7 9.0 54 23-78 5-73 (454)
358 PF13649 Methyltransf_25: Meth 58.5 28 0.00061 22.2 4.6 70 23-93 23-92 (101)
359 TIGR02638 lactal_redase lactal 58.4 74 0.0016 25.9 7.9 61 25-86 30-103 (379)
360 COG4607 CeuA ABC-type enteroch 58.2 27 0.00058 28.3 5.1 51 21-77 55-127 (320)
361 PRK14987 gluconate operon tran 58.2 64 0.0014 24.9 7.3 37 40-76 85-127 (331)
362 PF03060 NMO: Nitronate monoox 57.5 46 0.001 26.6 6.5 94 25-120 114-217 (330)
363 COG1214 Inactive homolog of me 57.4 16 0.00034 27.7 3.6 38 68-105 58-97 (220)
364 cd05298 GH4_GlvA_pagL_like Gly 57.4 26 0.00057 29.4 5.2 21 96-116 158-182 (437)
365 PRK10653 D-ribose transporter 57.3 83 0.0018 23.9 9.2 52 24-76 26-90 (295)
366 cd06324 PBP1_ABC_sugar_binding 57.3 40 0.00087 25.9 6.0 39 39-77 21-67 (305)
367 PRK09959 hybrid sensory histid 57.1 44 0.00096 31.0 7.1 80 23-104 957-1037(1197)
368 cd06283 PBP1_RegR_EndR_KdgR_li 57.1 53 0.0012 24.0 6.5 38 40-77 21-64 (267)
369 cd08187 BDH Butanol dehydrogen 57.0 79 0.0017 25.7 7.9 63 24-87 28-104 (382)
370 PRK09461 ansA cytoplasmic aspa 56.9 24 0.00052 28.5 4.8 37 67-103 232-270 (335)
371 PTZ00254 40S ribosomal protein 56.8 84 0.0018 24.6 7.5 74 24-104 71-148 (249)
372 PRK09581 pleD response regulat 56.6 61 0.0013 25.9 7.1 77 25-103 3-82 (457)
373 PRK10840 transcriptional regul 56.6 73 0.0016 23.0 7.2 80 24-105 3-88 (216)
374 TIGR01752 flav_long flavodoxin 56.5 70 0.0015 22.8 8.8 78 27-106 2-87 (167)
375 cd06293 PBP1_LacI_like_11 Liga 56.2 78 0.0017 23.4 7.3 39 39-77 20-64 (269)
376 cd06270 PBP1_GalS_like Ligand 56.1 80 0.0017 23.3 7.7 39 39-77 20-64 (268)
377 cd06271 PBP1_AglR_RafR_like Li 55.8 53 0.0012 24.0 6.3 39 39-77 24-68 (268)
378 cd06317 PBP1_ABC_sugar_binding 55.8 77 0.0017 23.3 7.2 58 40-103 22-87 (275)
379 cd06290 PBP1_LacI_like_9 Ligan 55.5 79 0.0017 23.2 7.2 38 40-77 21-64 (265)
380 PRK00141 murD UDP-N-acetylmura 55.4 74 0.0016 26.7 7.6 34 21-55 12-45 (473)
381 PRK05928 hemD uroporphyrinogen 55.3 47 0.001 24.4 5.9 90 25-119 2-103 (249)
382 cd08193 HVD 5-hydroxyvalerate 55.2 1.1E+02 0.0023 24.9 8.3 62 25-87 27-101 (376)
383 TIGR01839 PHA_synth_II poly(R) 55.2 18 0.0004 31.5 4.0 66 38-112 237-304 (560)
384 cd01080 NAD_bind_m-THF_DH_Cycl 55.0 54 0.0012 23.8 6.0 55 22-77 42-96 (168)
385 PRK13337 putative lipid kinase 54.7 1E+02 0.0022 24.1 9.7 42 40-81 24-70 (304)
386 PRK10499 PTS system N,N'-diace 54.6 62 0.0013 21.6 7.0 70 25-103 4-79 (106)
387 cd08170 GlyDH Glycerol dehydro 54.6 54 0.0012 26.2 6.5 74 25-104 23-108 (351)
388 cd02071 MM_CoA_mut_B12_BD meth 54.2 65 0.0014 21.7 7.8 39 39-78 18-60 (122)
389 cd02070 corrinoid_protein_B12- 53.8 87 0.0019 23.0 7.1 80 38-119 100-188 (201)
390 cd00532 MGS-like MGS-like doma 53.7 63 0.0014 21.4 5.8 60 40-101 34-103 (112)
391 PRK13856 two-component respons 53.6 22 0.00047 26.1 3.8 77 26-105 3-80 (241)
392 COG1587 HemD Uroporphyrinogen- 53.6 96 0.0021 23.5 7.5 95 24-123 1-105 (248)
393 PRK04308 murD UDP-N-acetylmura 53.5 1.2E+02 0.0026 24.9 8.5 32 24-56 5-36 (445)
394 PRK02261 methylaspartate mutas 53.4 75 0.0016 22.2 7.8 40 38-78 21-64 (137)
395 TIGR01481 ccpA catabolite cont 53.4 95 0.0021 23.8 7.6 55 23-77 58-124 (329)
396 PRK10651 transcriptional regul 53.3 75 0.0016 22.1 7.1 84 21-105 3-88 (216)
397 cd06278 PBP1_LacI_like_2 Ligan 53.3 62 0.0013 23.7 6.3 38 40-77 21-63 (266)
398 PLN02979 glycolate oxidase 53.0 1.3E+02 0.0029 24.9 9.5 83 36-120 210-305 (366)
399 cd06289 PBP1_MalI_like Ligand- 52.8 84 0.0018 23.0 6.9 38 40-77 21-64 (268)
400 COG5426 Uncharacterized membra 52.7 22 0.00048 27.1 3.6 70 39-110 36-125 (254)
401 COG2242 CobL Precorrin-6B meth 52.5 74 0.0016 23.8 6.4 54 22-77 56-111 (187)
402 PRK09935 transcriptional regul 52.5 77 0.0017 22.1 7.3 79 24-104 3-84 (210)
403 COG3706 PleD Response regulato 52.4 61 0.0013 27.4 6.6 93 23-117 131-230 (435)
404 TIGR03436 acidobact_VWFA VWFA- 52.3 37 0.00079 26.3 5.0 50 71-121 168-238 (296)
405 cd08178 AAD_C C-terminal alcoh 52.1 1.2E+02 0.0026 24.8 8.2 61 25-86 22-95 (398)
406 PRK13557 histidine kinase; Pro 52.1 86 0.0019 25.6 7.4 81 22-104 413-496 (540)
407 PLN02884 6-phosphofructokinase 51.9 14 0.00029 31.0 2.6 46 67-112 142-200 (411)
408 cd06308 PBP1_sensor_kinase_lik 51.4 47 0.001 24.6 5.4 60 40-104 21-88 (270)
409 TIGR00333 nrdI ribonucleoside- 51.3 80 0.0017 21.9 6.7 65 35-104 5-69 (125)
410 COG3199 Predicted inorganic po 51.1 28 0.0006 28.6 4.2 35 67-107 99-133 (355)
411 PLN02699 Bifunctional molybdop 50.9 97 0.0021 27.6 7.9 43 37-79 211-260 (659)
412 PRK00286 xseA exodeoxyribonucl 50.6 1.2E+02 0.0026 25.2 8.1 78 24-101 135-228 (438)
413 COG3947 Response regulator con 50.6 39 0.00084 27.6 4.9 78 25-104 1-79 (361)
414 cd08551 Fe-ADH iron-containing 50.5 1.3E+02 0.0029 24.2 8.3 62 25-87 24-98 (370)
415 PRK10936 TMAO reductase system 50.4 97 0.0021 24.4 7.3 75 24-103 46-134 (343)
416 cd06267 PBP1_LacI_sugar_bindin 50.3 57 0.0012 23.5 5.6 56 40-103 21-84 (264)
417 PRK11303 DNA-binding transcrip 50.2 1.1E+02 0.0025 23.4 7.9 54 24-77 61-126 (328)
418 COG0420 SbcD DNA repair exonuc 50.2 32 0.00069 27.9 4.6 36 66-104 38-82 (390)
419 PF01070 FMN_dh: FMN-dependent 50.2 1E+02 0.0023 25.1 7.5 79 41-121 217-308 (356)
420 PRK10014 DNA-binding transcrip 50.0 1.2E+02 0.0025 23.4 8.3 37 40-77 86-129 (342)
421 PRK11466 hybrid sensory histid 49.6 83 0.0018 28.2 7.4 80 23-104 680-761 (914)
422 PLN02958 diacylglycerol kinase 49.6 70 0.0015 27.2 6.6 60 22-81 109-181 (481)
423 PRK15399 lysine decarboxylase 49.5 88 0.0019 28.2 7.4 74 25-103 1-82 (713)
424 cd00363 PFK Phosphofructokinas 49.4 13 0.00029 30.0 2.2 39 65-103 89-127 (338)
425 cd06294 PBP1_ycjW_transcriptio 49.1 82 0.0018 23.1 6.4 39 39-77 25-69 (270)
426 cd01543 PBP1_XylR Ligand-bindi 49.0 98 0.0021 22.9 6.8 38 39-76 19-58 (265)
427 PRK10403 transcriptional regul 48.9 88 0.0019 21.7 7.0 82 22-104 4-87 (215)
428 cd05565 PTS_IIB_lactose PTS_II 48.5 79 0.0017 21.0 6.0 57 40-103 20-78 (99)
429 cd08194 Fe-ADH6 Iron-containin 48.0 1.2E+02 0.0027 24.5 7.6 61 25-86 24-97 (375)
430 TIGR01818 ntrC nitrogen regula 48.0 80 0.0017 25.9 6.7 76 27-104 1-77 (463)
431 PRK11041 DNA-binding transcrip 48.0 55 0.0012 24.8 5.4 56 22-77 33-100 (309)
432 PRK08227 autoinducer 2 aldolas 47.8 42 0.0009 26.4 4.7 58 45-106 168-226 (264)
433 cd00156 REC Signal receiver do 47.6 54 0.0012 18.8 6.3 75 29-104 2-76 (113)
434 PRK09526 lacI lac repressor; R 47.5 1.3E+02 0.0028 23.2 8.3 36 40-75 85-127 (342)
435 smart00870 Asparaginase Aspara 47.4 1E+02 0.0022 24.7 6.9 35 67-103 234-270 (323)
436 PRK05452 anaerobic nitric oxid 47.2 83 0.0018 26.7 6.7 54 24-78 251-313 (479)
437 PRK00742 chemotaxis-specific m 47.1 1.2E+02 0.0026 24.1 7.4 79 24-105 3-84 (354)
438 COG0784 CheY FOG: CheY-like re 47.1 56 0.0012 21.1 4.7 86 22-110 3-91 (130)
439 TIGR02637 RhaS rhamnose ABC tr 47.0 61 0.0013 24.7 5.5 38 39-76 19-64 (302)
440 PRK10046 dpiA two-component re 46.8 1.1E+02 0.0025 22.3 7.3 52 23-74 3-56 (225)
441 PF13380 CoA_binding_2: CoA bi 46.8 87 0.0019 21.0 6.1 50 26-76 2-63 (116)
442 cd06285 PBP1_LacI_like_7 Ligan 46.6 89 0.0019 23.0 6.2 38 39-76 20-63 (265)
443 KOG4435 Predicted lipid kinase 46.4 27 0.00058 29.6 3.5 57 24-81 60-129 (535)
444 KOG0538 Glycolate oxidase [Ene 46.2 1.5E+02 0.0033 24.3 7.6 92 35-127 209-313 (363)
445 cd08191 HHD 6-hydroxyhexanoate 46.1 1.3E+02 0.0028 24.6 7.5 62 25-87 23-97 (386)
446 TIGR00853 pts-lac PTS system, 45.7 84 0.0018 20.5 8.1 71 25-103 4-81 (95)
447 PRK06555 pyrophosphate--fructo 45.7 21 0.00045 29.9 2.8 49 64-112 108-169 (403)
448 TIGR03702 lip_kinase_YegS lipi 45.6 87 0.0019 24.3 6.2 42 39-80 18-64 (293)
449 PRK09423 gldA glycerol dehydro 45.5 74 0.0016 25.7 6.0 76 25-105 30-116 (366)
450 PRK05299 rpsB 30S ribosomal pr 45.5 93 0.002 24.3 6.3 31 68-105 157-188 (258)
451 PRK14072 6-phosphofructokinase 45.4 17 0.00038 30.3 2.3 38 66-103 101-138 (416)
452 PRK10624 L-1,2-propanediol oxi 45.4 1.4E+02 0.0031 24.2 7.7 61 25-86 31-104 (382)
453 cd06302 PBP1_LsrB_Quorum_Sensi 45.4 1.4E+02 0.0029 22.8 9.2 36 40-76 21-64 (298)
454 TIGR00511 ribulose_e2b2 ribose 45.0 95 0.0021 24.7 6.4 85 19-108 136-228 (301)
455 PTZ00286 6-phospho-1-fructokin 44.9 21 0.00045 30.4 2.7 47 66-112 174-233 (459)
456 cd05564 PTS_IIB_chitobiose_lic 44.6 86 0.0019 20.3 7.5 57 40-103 19-77 (96)
457 TIGR00524 eIF-2B_rel eIF-2B al 44.5 78 0.0017 25.3 5.8 83 18-105 146-239 (303)
458 PRK12419 riboflavin synthase s 44.2 1.1E+02 0.0024 22.3 6.1 78 23-101 9-110 (158)
459 PRK07085 diphosphate--fructose 44.1 22 0.00047 31.0 2.8 37 67-103 163-199 (555)
460 PF01008 IF-2B: Initiation fac 44.0 37 0.0008 26.2 3.9 87 18-109 127-222 (282)
461 TIGR02417 fruct_sucro_rep D-fr 44.0 1.5E+02 0.0032 22.8 8.4 54 24-77 60-125 (327)
462 PF00532 Peripla_BP_1: Peripla 43.9 1.2E+02 0.0025 23.4 6.6 39 39-77 22-65 (279)
463 COG2247 LytB Putative cell wal 43.8 82 0.0018 25.7 5.8 55 27-82 30-89 (337)
464 PRK15454 ethanol dehydrogenase 43.7 1.5E+02 0.0033 24.4 7.6 61 25-86 50-123 (395)
465 cd06272 PBP1_hexuronate_repres 43.3 85 0.0018 23.0 5.7 38 40-77 21-60 (261)
466 PRK12555 chemotaxis-specific m 43.3 1.4E+02 0.003 23.6 7.1 79 25-106 1-82 (337)
467 cd06311 PBP1_ABC_sugar_binding 42.7 75 0.0016 23.6 5.3 38 40-77 21-69 (274)
468 cd01544 PBP1_GalR Ligand-bindi 42.5 1E+02 0.0022 22.9 6.0 36 39-76 25-60 (270)
469 cd06280 PBP1_LacI_like_4 Ligan 42.5 61 0.0013 23.9 4.8 39 39-77 20-64 (263)
470 PTZ00445 p36-lilke protein; Pr 42.3 1.5E+02 0.0033 22.8 6.8 64 37-110 31-104 (219)
471 PF05582 Peptidase_U57: YabG p 42.3 67 0.0014 25.7 5.0 105 19-123 100-228 (287)
472 PLN02699 Bifunctional molybdop 42.3 2.4E+02 0.0052 25.2 9.0 68 17-84 451-541 (659)
473 PRK13059 putative lipid kinase 42.1 1.4E+02 0.0031 23.2 7.0 42 40-81 24-69 (295)
474 PRK08335 translation initiatio 42.1 1.5E+02 0.0032 23.5 7.0 87 19-109 130-223 (275)
475 PRK11197 lldD L-lactate dehydr 41.9 2E+02 0.0044 23.8 9.2 78 41-120 237-327 (381)
476 cd08182 HEPD Hydroxyethylphosp 41.9 1.3E+02 0.0027 24.3 6.8 62 25-87 24-95 (367)
477 TIGR02477 PFKA_PPi diphosphate 41.7 24 0.00052 30.6 2.7 37 67-103 160-196 (539)
478 PRK06425 histidinol-phosphate 41.7 1.7E+02 0.0037 22.9 8.2 54 26-83 81-136 (332)
479 PRK08535 translation initiatio 41.7 1.2E+02 0.0026 24.2 6.5 84 19-108 141-233 (310)
480 cd08171 GlyDH-like2 Glycerol d 41.7 1.6E+02 0.0035 23.5 7.3 76 25-105 23-110 (345)
481 TIGR02955 TMAO_TorT TMAO reduc 41.6 1.1E+02 0.0023 23.3 6.1 59 40-103 21-87 (295)
482 cd08186 Fe-ADH8 Iron-containin 41.1 2E+02 0.0042 23.4 8.3 62 25-87 27-102 (383)
483 PRK10955 DNA-binding transcrip 41.0 1.3E+02 0.0028 21.4 7.6 76 25-104 2-78 (232)
484 cd01461 vWA_interalpha_trypsin 41.0 1.2E+02 0.0025 20.8 6.0 52 69-122 101-160 (171)
485 PF14403 CP_ATPgrasp_2: Circul 40.9 48 0.001 28.1 4.3 50 21-77 182-235 (445)
486 cd08176 LPO Lactadehyde:propan 40.7 1.4E+02 0.003 24.2 6.9 61 25-86 29-102 (377)
487 PRK09860 putative alcohol dehy 40.7 2E+02 0.0044 23.5 8.1 61 25-86 32-105 (383)
488 TIGR01849 PHB_depoly_PhaZ poly 40.4 83 0.0018 26.3 5.6 75 25-110 103-182 (406)
489 TIGR01011 rpsB_bact ribosomal 40.3 1E+02 0.0022 23.5 5.7 31 68-105 155-186 (225)
490 PRK06444 prephenate dehydrogen 40.2 1E+02 0.0022 23.0 5.6 28 25-52 1-28 (197)
491 TIGR00237 xseA exodeoxyribonuc 40.1 2.2E+02 0.0048 23.8 8.4 89 13-101 116-223 (432)
492 PRK09492 treR trehalose repres 39.9 96 0.0021 23.6 5.6 38 39-76 83-126 (315)
493 PF13941 MutL: MutL protein 39.3 2.4E+02 0.0053 24.0 9.6 61 19-79 71-135 (457)
494 PRK06830 diphosphate--fructose 38.8 29 0.00063 29.4 2.7 45 67-111 171-228 (443)
495 PF04007 DUF354: Protein of un 38.8 1.6E+02 0.0034 23.9 6.9 77 38-116 17-102 (335)
496 COG0655 WrbA Multimeric flavod 38.8 1.2E+02 0.0027 22.2 5.9 24 34-57 13-40 (207)
497 PRK05567 inosine 5'-monophosph 37.7 2.5E+02 0.0055 23.8 8.3 96 22-119 238-357 (486)
498 PF04321 RmlD_sub_bind: RmlD s 37.7 43 0.00093 26.0 3.4 58 25-82 1-65 (286)
499 PRK10360 DNA-binding transcrip 37.5 1.4E+02 0.003 20.6 6.3 76 25-104 2-79 (196)
500 PRK00726 murG undecaprenyldiph 37.4 1.6E+02 0.0035 23.0 6.7 29 68-105 252-280 (357)
No 1
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=6.1e-31 Score=194.56 Aligned_cols=109 Identities=45% Similarity=0.781 Sum_probs=100.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (133)
+++|++|||+|||+++++++|++.|.++.+++++..+.+.+...++|+||||+|||+|.|.+...+.|+++..++|+|||
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGV 80 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGV 80 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE
Confidence 36899999999999999999999999999999875666666666899999999999999999888999998778999999
Q ss_pred echHHHHHHHhCCeeeeccCCcceeeeee
Q 032797 104 CMGLQCIGEAFGDCAFSAWCHAWKKFSCV 132 (133)
Q Consensus 104 ClG~QlLa~a~GG~v~~~~~~~~g~~~~~ 132 (133)
|+|||.|+++|||+|.+++++.||++|.|
T Consensus 81 CLGHQai~~~fGg~V~~a~~~~HGK~s~i 109 (191)
T COG0512 81 CLGHQAIAEAFGGKVVRAKEPMHGKTSII 109 (191)
T ss_pred CccHHHHHHHhCCEEEecCCCcCCeeeee
Confidence 99999999999999999999999999965
No 2
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.96 E-value=2e-29 Score=187.25 Aligned_cols=106 Identities=42% Similarity=0.712 Sum_probs=94.1
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl 105 (133)
||++|||+|||++++.++|++.|+++.++++++.+.+++...++|+|||+|||++|.+.....++++.+..++|+||||+
T Consensus 1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGICl 80 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCL 80 (187)
T ss_pred CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECH
Confidence 48999999999999999999999999999987666777765689999999999999988777777777778899999999
Q ss_pred hHHHHHHHhCCeeeeccCCcceeeee
Q 032797 106 GLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 106 G~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
|||+||.++||+|.+.+..++|.++-
T Consensus 81 G~Q~la~a~Gg~v~~~~~~~~g~~~~ 106 (187)
T PRK08007 81 GHQAMAQAFGGKVVRAAKVMHGKTSP 106 (187)
T ss_pred HHHHHHHHcCCEEEeCCCcccCCceE
Confidence 99999999999999998877876543
No 3
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.96 E-value=2.3e-29 Score=186.95 Aligned_cols=107 Identities=43% Similarity=0.769 Sum_probs=95.3
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl 105 (133)
||++|||+|||++++++.|++.|+++++++++..+.+++...++|+||++|||++|.+.+...++++.++.++|+||||+
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~ 80 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCL 80 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECH
Confidence 48999999999999999999999999999987566777766689999999999999988776777777778899999999
Q ss_pred hHHHHHHHhCCeeeeccCCcceeeeee
Q 032797 106 GLQCIGEAFGDCAFSAWCHAWKKFSCV 132 (133)
Q Consensus 106 G~QlLa~a~GG~v~~~~~~~~g~~~~~ 132 (133)
|||+||.++||+|.+.++.++|+++++
T Consensus 81 G~Qlla~~~GG~v~~~~~~~~G~~~~~ 107 (191)
T PRK06774 81 GHQALGQAFGARVVRARQVMHGKTSAI 107 (191)
T ss_pred HHHHHHHHhCCEEEeCCcceecceEEE
Confidence 999999999999999887788877654
No 4
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.96 E-value=2.1e-28 Score=182.99 Aligned_cols=105 Identities=43% Similarity=0.775 Sum_probs=93.0
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl 105 (133)
||+||||+|||++++.++|++.|+++.+++.++.+.+++...++|+|||+|||++|++.+...+.++.+..++|+||||+
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGICl 80 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCL 80 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcH
Confidence 58999999999999999999999999999987556666655689999999999999988766677777777899999999
Q ss_pred hHHHHHHHhCCeeeeccCCcceeee
Q 032797 106 GLQCIGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 106 G~QlLa~a~GG~v~~~~~~~~g~~~ 130 (133)
|||+|+.++||+|.+.+..++|..+
T Consensus 81 G~Qlla~~lGg~V~~~~~~~~G~~~ 105 (195)
T PRK07649 81 GHQSIAQVFGGEVVRAERLMHGKTS 105 (195)
T ss_pred HHHHHHHHcCCEEeeCCCcccCCeE
Confidence 9999999999999998877777765
No 5
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.96 E-value=5.1e-28 Score=179.70 Aligned_cols=105 Identities=45% Similarity=0.755 Sum_probs=91.7
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl 105 (133)
+|++|||+|||++++.++|++.|+++.+++++..+.+++...++|+|||+|||++|.+.....++++++.+++|+||||+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~ 80 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCL 80 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECH
Confidence 48999999999999999999999999999976556777766679999999999999876666678887777899999999
Q ss_pred hHHHHHHHhCCeeeeccCCcceeee
Q 032797 106 GLQCIGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 106 G~QlLa~a~GG~v~~~~~~~~g~~~ 130 (133)
|||+|+.++||+|.+.+...+|.++
T Consensus 81 G~Qll~~~~GG~v~~~~~~~~g~~~ 105 (188)
T TIGR00566 81 GHQAMGQAFGGDVVRANTVMHGKTS 105 (188)
T ss_pred HHHHHHHHcCCEEeeCCCccccceE
Confidence 9999999999999998876677443
No 6
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.95 E-value=1.6e-27 Score=176.79 Aligned_cols=106 Identities=53% Similarity=0.892 Sum_probs=91.1
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl 105 (133)
||+|||++|+|++++.++|+++|+++++++++....+++...++||||++|||++|.+.....++++++..++|+||||+
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl 80 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL 80 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH
Confidence 58999999999999999999999999999986444555554569999999999999877666677777777899999999
Q ss_pred hHHHHHHHhCCeeeeccCCcceeeee
Q 032797 106 GLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 106 G~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
|||+|+.++||+|.+.+..++|..+.
T Consensus 81 G~Qlla~alGg~v~~~~~~~~g~~~~ 106 (189)
T PRK05670 81 GHQAIGEAFGGKVVRAKEIMHGKTSP 106 (189)
T ss_pred HHHHHHHHhCCEEEecCCcccCceeE
Confidence 99999999999999988777776543
No 7
>CHL00101 trpG anthranilate synthase component 2
Probab=99.95 E-value=1.7e-27 Score=177.15 Aligned_cols=107 Identities=48% Similarity=0.774 Sum_probs=91.5
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl 105 (133)
||+||||+|+|++++.++|++.|.++.+++.+..+.+++...++||||++|||++|++.....++++.++.++|+||||+
T Consensus 1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGICl 80 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCL 80 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEch
Confidence 48999999999999999999999999999876556666654579999999999999876655555655678899999999
Q ss_pred hHHHHHHHhCCeeeeccCCcceeeeee
Q 032797 106 GLQCIGEAFGDCAFSAWCHAWKKFSCV 132 (133)
Q Consensus 106 G~QlLa~a~GG~v~~~~~~~~g~~~~~ 132 (133)
|||+||.++||+|.+.+..++|.++.+
T Consensus 81 G~Qlla~~~Gg~V~~~~~~~~g~~~~~ 107 (190)
T CHL00101 81 GHQSIGYLFGGKIIKAPKPMHGKTSKI 107 (190)
T ss_pred hHHHHHHHhCCEEEECCCcccCceeeE
Confidence 999999999999999987777776543
No 8
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.95 E-value=3.8e-27 Score=175.49 Aligned_cols=105 Identities=44% Similarity=0.775 Sum_probs=91.2
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl 105 (133)
||++|||+|||++++.++|++.|+++++++++..+.+++...++|++|++|||++|++.....++++.++.++|+||||+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGICl 80 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCL 80 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcH
Confidence 48999999999999999999999999999986445555554579999999999999977666677777778999999999
Q ss_pred hHHHHHHHhCCeeeeccCCcceeee
Q 032797 106 GLQCIGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 106 G~QlLa~a~GG~v~~~~~~~~g~~~ 130 (133)
|||+||.++||+|.+.+..++|.+.
T Consensus 81 G~Qlia~a~Gg~v~~~~~~~~G~~~ 105 (193)
T PRK08857 81 GHQAIAQVFGGQVVRARQVMHGKTS 105 (193)
T ss_pred HHHHHHHHhCCEEEeCCCceeCceE
Confidence 9999999999999999877777643
No 9
>PLN02335 anthranilate synthase
Probab=99.94 E-value=1.8e-26 Score=175.67 Aligned_cols=103 Identities=84% Similarity=1.371 Sum_probs=89.9
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (133)
..++.+|+|||++|+|++++.++|+++|+++++++++..+.+++...++|+|||+|||++|+|.+...+.++++..++|+
T Consensus 15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~Pi 94 (222)
T PLN02335 15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPL 94 (222)
T ss_pred cCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCE
Confidence 35677999999999999999999999999999999865566666555799999999999999877666677777778999
Q ss_pred EEEechHHHHHHHhCCeeeeccC
Q 032797 101 FGVCMGLQCIGEAFGDCAFSAWC 123 (133)
Q Consensus 101 LGIClG~QlLa~a~GG~v~~~~~ 123 (133)
||||+|||+|+.++||+|.+.+.
T Consensus 95 LGIClG~QlLa~alGg~v~~~~~ 117 (222)
T PLN02335 95 FGVCMGLQCIGEAFGGKIVRSPF 117 (222)
T ss_pred EEecHHHHHHHHHhCCEEEeCCC
Confidence 99999999999999999998763
No 10
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.94 E-value=2e-26 Score=171.12 Aligned_cols=103 Identities=28% Similarity=0.505 Sum_probs=86.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
|||+||||+|+|++++.++|++.|.++++++++..+.+++. .+|+||++|||++|.+.....++|++++.++|+||||
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~--~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIC 79 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVC 79 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc--cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEc
Confidence 79999999999999999999999999999987544445554 7999999999998765555567777777889999999
Q ss_pred chHHHHHHHhCCeeeeccCCcceee
Q 032797 105 MGLQCIGEAFGDCAFSAWCHAWKKF 129 (133)
Q Consensus 105 lG~QlLa~a~GG~v~~~~~~~~g~~ 129 (133)
+|||+|+.++||+|.+.+...+|..
T Consensus 80 lG~Qlla~~~Gg~V~~~~~~~~g~~ 104 (190)
T PRK06895 80 LGHQTLCEFFGGELYNLNNVRHGQQ 104 (190)
T ss_pred HHHHHHHHHhCCeEeecCCCccCce
Confidence 9999999999999998765555543
No 11
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.94 E-value=5.1e-26 Score=171.70 Aligned_cols=103 Identities=34% Similarity=0.601 Sum_probs=88.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
.||++||++|+|++++.+.|++.|+.+++++++ .+.+++...++|+|||+|||++|+|.....++++....++|+||||
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIC 80 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGIC 80 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEc
Confidence 479999999999999999999999999999986 4567776568999999999999988766666776554579999999
Q ss_pred chHHHHHHHhCCeeeeccCCcceee
Q 032797 105 MGLQCIGEAFGDCAFSAWCHAWKKF 129 (133)
Q Consensus 105 lG~QlLa~a~GG~v~~~~~~~~g~~ 129 (133)
+|||+|+.++||+|.+.. .++|..
T Consensus 81 lG~Qlla~alGG~V~~~~-~~~G~~ 104 (208)
T PRK05637 81 LGFQALLEHHGGKVEPCG-PVHGTT 104 (208)
T ss_pred HHHHHHHHHcCCeeccCC-cccceE
Confidence 999999999999999765 355544
No 12
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.92 E-value=1.2e-24 Score=164.84 Aligned_cols=108 Identities=44% Similarity=0.721 Sum_probs=89.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc--cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF 101 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~--~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvL 101 (133)
|||+++|++++|+.++.++|++.|+.+++++++....++.. ...+|||||+|||++|.+.....++++++ ++++|+|
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL 80 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL 80 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence 68999999999999999999999999999988632222222 13799999999999988776667788885 6789999
Q ss_pred EEechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797 102 GVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV 132 (133)
Q Consensus 102 GIClG~QlLa~a~GG~v~~~~~~~~g~~~~~ 132 (133)
|||+|||+|+.++||+|.+.+..++|.++.|
T Consensus 81 GIC~G~Qlla~a~GG~v~~~~~~~~g~~~~v 111 (214)
T PRK07765 81 GVCLGHQAIGVAFGATVDRAPELLHGKTSSV 111 (214)
T ss_pred EEccCHHHHHHHhCCEEeeCCCCccCceeEE
Confidence 9999999999999999999887666765543
No 13
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=2e-24 Score=181.81 Aligned_cols=108 Identities=33% Similarity=0.556 Sum_probs=91.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~---~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvL 101 (133)
+||++|||+|||++++++.|++.|.++.+++.+.. ..+++...++|+|||||||++|+|.+...++++.+..++|+|
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPIL 81 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII 81 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEE
Confidence 58999999999999999999999999999886421 245554457899999999999988765555555566689999
Q ss_pred EEechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797 102 GVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV 132 (133)
Q Consensus 102 GIClG~QlLa~a~GG~v~~~~~~~~g~~~~~ 132 (133)
|||+|||+|+.++||+|.+.++.+||+++.+
T Consensus 82 GIClG~QlLa~a~GG~V~~~~~~~~G~~~~i 112 (531)
T PRK09522 82 GICLGHQAIVEAYGGYVGQAGEILHGKASSI 112 (531)
T ss_pred EEcHHHHHHHHhcCCEEEeCCceeeeeEEEE
Confidence 9999999999999999999988888887643
No 14
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.91 E-value=5.5e-24 Score=156.95 Aligned_cols=104 Identities=54% Similarity=0.860 Sum_probs=84.5
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEech
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIClG 106 (133)
|+|+|++++|++++.++|++.|+++++++++..........++||+|++|||+++.+......+++.+.+++|+||||+|
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 80 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLG 80 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHh
Confidence 68999999999999999999999999999864322211224799999999999988776544444445678999999999
Q ss_pred HHHHHHHhCCeeeeccCCcceeee
Q 032797 107 LQCIGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 107 ~QlLa~a~GG~v~~~~~~~~g~~~ 130 (133)
||+|+.++||+|.+.+..++|..+
T Consensus 81 ~Qlla~~~Gg~v~~~~~~~~g~~~ 104 (184)
T cd01743 81 HQAIAEAFGGKVVRAPEPMHGKTS 104 (184)
T ss_pred HHHHHHHhCCEEEeCCCCCcCcee
Confidence 999999999999998876666544
No 15
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.91 E-value=1.7e-23 Score=157.00 Aligned_cols=106 Identities=23% Similarity=0.319 Sum_probs=89.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTV 98 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G-~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~~ 98 (133)
.+|+|+|++.+|++.+.+++++.| ...++++++ .+.+++...++||+||+|||.++++++ ...++|++. ..++
T Consensus 2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~-~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~ 80 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYT-GDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGK 80 (198)
T ss_pred cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCC-CCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCC
Confidence 478999999999999999999999 777777775 455666656789999999999998766 346778775 5678
Q ss_pred CEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 99 PLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 99 PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
|+||||+|||+||.++||+|.+++..|+|++.+
T Consensus 81 pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G~~~v 113 (198)
T COG0518 81 PVLGICLGHQLLAKALGGKVERGPKREIGWTPV 113 (198)
T ss_pred CEEEEChhHHHHHHHhCCEEeccCCCccceEEE
Confidence 899999999999999999999998778877654
No 16
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.91 E-value=1.5e-23 Score=184.10 Aligned_cols=107 Identities=39% Similarity=0.620 Sum_probs=91.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCCHHHHcc-----CCCCEEEECCCCCCcCCc---hHHHHHHHHhC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDS---GISLQTVLELG 95 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~~~~~l~~-----~~~DgvIl~GG~~~~~d~---~~~~~~i~~~~ 95 (133)
|||++|||||||++++++.|++. |.++.++++++.+.+++.. ..+|+|||+||||+|... +...++|++.
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~- 160 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC- 160 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-
Confidence 68999999999999999999997 9999999988667766532 379999999999999644 3345666654
Q ss_pred CCCCEEEEechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797 96 PTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV 132 (133)
Q Consensus 96 ~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~~ 132 (133)
.++||||||+|||+|+.++||+|.+++.+.||+++-|
T Consensus 161 ~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~HG~~s~I 197 (918)
T PLN02889 161 RDIPILGVCLGHQALGYVHGARIVHAPEPVHGRLSEI 197 (918)
T ss_pred CCCcEEEEcHHHHHHHHhcCceEEeCCCceeeeeeeE
Confidence 4699999999999999999999999999999998754
No 17
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.90 E-value=2.1e-23 Score=151.53 Aligned_cols=114 Identities=78% Similarity=1.237 Sum_probs=103.7
Q ss_pred ccCCCCCeEEEEECCCCchHHHHHHH-HhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCC
Q 032797 19 KSKNNKNPIIVIDNYDSFTYNLCQYM-GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPT 97 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~~~i~~~l-~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~ 97 (133)
-+...+..|++|||||+|++++.++| -+.|+.+.++++|+.+.+++...++++++|++|||+|.|.+-..+.|+++...
T Consensus 13 ~~~~~n~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~ 92 (223)
T KOG0026|consen 13 NSSKQNGPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPL 92 (223)
T ss_pred ccccccCCEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCC
Confidence 33455678999999999999999999 67899999999999999999888999999999999999888888999999889
Q ss_pred CCEEEEechHHHHHHHhCCeeeecc-CCcceeeeee
Q 032797 98 VPLFGVCMGLQCIGEAFGDCAFSAW-CHAWKKFSCV 132 (133)
Q Consensus 98 ~PvLGIClG~QlLa~a~GG~v~~~~-~~~~g~~~~~ 132 (133)
+|+||||.|.|.|.++|||+|.+++ +.-+|++|-|
T Consensus 93 iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i 128 (223)
T KOG0026|consen 93 VPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMV 128 (223)
T ss_pred CceeeeehhhhhhhhhhCcEEeccCcceeecccccc
Confidence 9999999999999999999999998 8899998754
No 18
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.90 E-value=1.2e-23 Score=177.32 Aligned_cols=107 Identities=50% Similarity=0.850 Sum_probs=91.3
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~-~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
||++|||+|||++++.+.|++.|.+ +.+++++..+.+++...++|+||++|||++|++.+...++++.+..++|+||||
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIC 80 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVC 80 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEc
Confidence 5899999999999999999999986 666655545677776567999999999999998776677777777789999999
Q ss_pred chHHHHHHHhCCeeeeccCCcceeeeee
Q 032797 105 MGLQCIGEAFGDCAFSAWCHAWKKFSCV 132 (133)
Q Consensus 105 lG~QlLa~a~GG~v~~~~~~~~g~~~~~ 132 (133)
+|||+|+.++||+|.+.+..++|.++.|
T Consensus 81 lG~QlLa~a~Gg~V~~~~~~~~G~~~~v 108 (534)
T PRK14607 81 LGHQAIGYAFGGKIVHAKRILHGKTSPI 108 (534)
T ss_pred HHHHHHHHHcCCeEecCCccccCCceeE
Confidence 9999999999999999987777775543
No 19
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.90 E-value=6.6e-23 Score=151.76 Aligned_cols=103 Identities=26% Similarity=0.439 Sum_probs=85.5
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEec
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCM 105 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGICl 105 (133)
|+|||++++|++++.++|++.|+++++++++ .+.+++...++|||||+||++++++... .++++. ++.++|+||||+
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~glii~Gg~~~~~~~~~-~~~i~~~~~~~~PilGIC~ 78 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNT-TPLEEIREKNPKGIILSGGPSSVYAENA-PRADEKIFELGVPVLGICY 78 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCC-CCHHHHhhcCCCEEEECCCCCCcCcCCc-hHHHHHHHhCCCCEEEECH
Confidence 5899999999999999999999999999986 3566665445779999999998887543 356666 478899999999
Q ss_pred hHHHHHHHhCCeeeeccCCcceeeee
Q 032797 106 GLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 106 G~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
|||+|+.++||+|.+.+..+.|+..+
T Consensus 79 G~Qll~~~lgg~v~~~~~~~~g~~~v 104 (188)
T TIGR00888 79 GMQLMAKQLGGEVGRAEKREYGKAEL 104 (188)
T ss_pred HHHHHHHhcCceEecCCCccceeEEE
Confidence 99999999999999887666666543
No 20
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.89 E-value=2e-23 Score=154.08 Aligned_cols=101 Identities=34% Similarity=0.508 Sum_probs=84.0
Q ss_pred EEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH--ccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 28 ~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l--~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
+|||+|++|++++.+++++.|.++++++.+. +.++. ...++|++||+||+++++|.....++++++ +.++|+||||
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~-~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC 79 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDS-DFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGIC 79 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTG-GHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEET
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCC-chhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEe
Confidence 6899999999999999999999999999863 32222 235899999999999999966666777775 6799999999
Q ss_pred chHHHHHHHhCCeeeecc-CCcceee
Q 032797 105 MGLQCIGEAFGDCAFSAW-CHAWKKF 129 (133)
Q Consensus 105 lG~QlLa~a~GG~v~~~~-~~~~g~~ 129 (133)
+|||+|+.++||+|.+.+ ....|.+
T Consensus 80 ~G~Q~la~~~G~~v~~~~~~~~~g~~ 105 (192)
T PF00117_consen 80 LGHQILAHALGGKVVPSPEKPHHGGN 105 (192)
T ss_dssp HHHHHHHHHTTHEEEEEESEEEEEEE
T ss_pred ehhhhhHHhcCCcccccccccccccc
Confidence 999999999999999887 4444443
No 21
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.89 E-value=1.7e-22 Score=148.22 Aligned_cols=103 Identities=28% Similarity=0.472 Sum_probs=82.1
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEec
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCM 105 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGICl 105 (133)
|++||++++|+.++.++|++.|+++++++++. +.++....++|+||++||++++++.... .+.+. .+.++|+||||+
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dgvIl~Gg~~~~~~~~~~-~~~~~~~~~~~PilGIC~ 78 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSVYEEDAP-RVDPEIFELGVPVLGICY 78 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCC-ChhhhcccCCCEEEECCCcccccccccc-hhhHHHHhcCCCEEEEcH
Confidence 57999999999999999999999999998763 3333333489999999999988765321 22233 245899999999
Q ss_pred hHHHHHHHhCCeeeeccCCcceeeee
Q 032797 106 GLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 106 G~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
|||+|+.++||+|.+.+.+++|+.++
T Consensus 79 G~Qll~~~~gg~v~~~~~~~~G~~~v 104 (181)
T cd01742 79 GMQLIAKALGGKVERGDKREYGKAEI 104 (181)
T ss_pred HHHHHHHhcCCeEEeCCCCcceEEEE
Confidence 99999999999999987777776654
No 22
>PRK00758 GMP synthase subunit A; Validated
Probab=99.88 E-value=3e-22 Score=147.82 Aligned_cols=100 Identities=26% Similarity=0.419 Sum_probs=80.8
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCC-CEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNP-RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~-DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
||+|||++++|++++.++|++.|.++.+++++ .+.+++. ++ ||+|++||| +..+.....++++ +.++|+||||
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~-~~~~~l~--~~~dgivi~Gg~-~~~~~~~~~~~l~--~~~~PilGIC 74 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNT-TPVEEIK--AFEDGLILSGGP-DIERAGNCPEYLK--ELDVPILGIC 74 (184)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCcEEEEECC-CCHHHHh--hcCCEEEECCCC-ChhhccccHHHHH--hCCCCEEEEe
Confidence 48999999999999999999999999998875 3556664 56 999999998 3322222334454 4579999999
Q ss_pred chHHHHHHHhCCeeeeccCCcceeeee
Q 032797 105 MGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 105 lG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
+|||+|+.++||+|.+.+..++|.+.+
T Consensus 75 ~G~Q~L~~a~Gg~v~~~~~~~~g~~~i 101 (184)
T PRK00758 75 LGHQLIAKAFGGEVGRGEYGEYALVEV 101 (184)
T ss_pred HHHHHHHHhcCcEEecCCCceeeeEEE
Confidence 999999999999999988778887665
No 23
>PLN02347 GMP synthetase
Probab=99.88 E-value=5.1e-22 Score=167.36 Aligned_cols=106 Identities=20% Similarity=0.327 Sum_probs=88.4
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH--HH-HHHHHh-CCCCCE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SL-QTVLEL-GPTVPL 100 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~--~~-~~i~~~-~~~~Pv 100 (133)
.+|+|||++++|++++.+++++.|+.++++|++ .+.+++...++|||||||||+++++.+. .. .+++.+ +.++|+
T Consensus 11 ~~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~-~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPI 89 (536)
T PLN02347 11 DVVLILDYGSQYTHLITRRVRELGVYSLLLSGT-ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPV 89 (536)
T ss_pred CEEEEEECCCcHHHHHHHHHHHCCCeEEEEECC-CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcE
Confidence 479999999999999999999999999999986 5677776557999999999999886532 22 233333 568999
Q ss_pred EEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 101 FGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 101 LGIClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
||||+|||+|+.++||+|.+.+..++|+.++
T Consensus 90 LGIClG~QlLa~alGG~V~~~~~~e~G~~~v 120 (536)
T PLN02347 90 LGICYGMQLIVQKLGGEVKPGEKQEYGRMEI 120 (536)
T ss_pred EEECHHHHHHHHHcCCEEEecCCcccceEEE
Confidence 9999999999999999999987777777764
No 24
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.88 E-value=5.4e-22 Score=162.19 Aligned_cols=104 Identities=30% Similarity=0.467 Sum_probs=89.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
.+|+++|+ +.++++.++|++.|++++++|++ .+.+++...++|||||||||++|.+.....+.++++..++|+||||
T Consensus 241 ~~IvviD~--G~K~nIlr~L~~~G~~v~VvP~~-~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGIC 317 (415)
T PLN02771 241 YHVIAYDF--GIKHNILRRLASYGCKITVVPST-WPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGIC 317 (415)
T ss_pred CEEEEECC--ChHHHHHHHHHHcCCeEEEECCC-CCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEc
Confidence 68999999 66899999999999999999986 4666766568999999999999987776677777754579999999
Q ss_pred chHHHHHHHhCCeeeeccCCcceeeee
Q 032797 105 MGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 105 lG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
+|||+|+.|+||++.+++...+|..+-
T Consensus 318 LGhQlLa~AlGGkv~K~~~Gh~G~n~p 344 (415)
T PLN02771 318 MGHQLLGQALGGKTFKMKFGHHGGNHP 344 (415)
T ss_pred HHHHHHHHhcCCeEEECCCCcccceEE
Confidence 999999999999999988766766553
No 25
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.88 E-value=4.6e-22 Score=146.37 Aligned_cols=99 Identities=27% Similarity=0.490 Sum_probs=81.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEec
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGICl 105 (133)
|+|+|+++.| +++++|++.|+.+++++++ .+.+++...++|+||++|||+++.+.....++++++ ++++|+||||+
T Consensus 1 i~i~d~g~~~--~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~ 77 (178)
T cd01744 1 VVVIDFGVKH--NILRELLKRGCEVTVVPYN-TDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICL 77 (178)
T ss_pred CEEEecCcHH--HHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECH
Confidence 5799998775 6899999999999999986 345555445799999999999888766667788875 77899999999
Q ss_pred hHHHHHHHhCCeeeeccCCccee
Q 032797 106 GLQCIGEAFGDCAFSAWCHAWKK 128 (133)
Q Consensus 106 G~QlLa~a~GG~v~~~~~~~~g~ 128 (133)
|||+|+.++||+|.+.+...+|.
T Consensus 78 G~Q~l~~~~Gg~v~~~~~~~~g~ 100 (178)
T cd01744 78 GHQLLALALGAKTYKMKFGHRGS 100 (178)
T ss_pred HHHHHHHHcCCceecCCCCCCCC
Confidence 99999999999999865444443
No 26
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.88 E-value=4.1e-22 Score=158.82 Aligned_cols=106 Identities=27% Similarity=0.501 Sum_probs=93.1
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCE
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL 100 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~Pv 100 (133)
..+.+|+++|+ +.++++.+.|.++|++++++|++ .+.+++...++|||+||.|||+|......++.|+++ +..+|+
T Consensus 177 ~~~~~Vv~iD~--GvK~nIlr~L~~rg~~vtVVP~~-t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPi 253 (368)
T COG0505 177 EPGKHVVVIDF--GVKRNILRELVKRGCRVTVVPAD-TSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPI 253 (368)
T ss_pred CCCcEEEEEEc--CccHHHHHHHHHCCCeEEEEcCC-CCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCe
Confidence 34679999999 78899999999999999999986 678888777999999999999998888888899986 667799
Q ss_pred EEEechHHHHHHHhCCeeeeccCCcceeee
Q 032797 101 FGVCMGLQCIGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 101 LGIClG~QlLa~a~GG~v~~~~~~~~g~~~ 130 (133)
||||+|||+|+.|+|++.+|++...+|.-+
T Consensus 254 fGICLGHQllalA~Ga~T~KmkFGHrG~Nh 283 (368)
T COG0505 254 FGICLGHQLLALALGAKTYKMKFGHRGANH 283 (368)
T ss_pred EEEcHHHHHHHHhcCCceeecccCCCCCCc
Confidence 999999999999999999999765555433
No 27
>PRK13566 anthranilate synthase; Provisional
Probab=99.88 E-value=6.2e-22 Score=171.45 Aligned_cols=110 Identities=34% Similarity=0.498 Sum_probs=91.5
Q ss_pred ccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCC
Q 032797 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPT 97 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~ 97 (133)
..+..+++|+||||+++|.+++.++|++.|+++++++++. +.+.+...++|+|||+|||++|.|.. ..++++++ +++
T Consensus 521 ~~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~-~~~~~~~~~~DgVVLsgGpgsp~d~~-~~~lI~~a~~~~ 598 (720)
T PRK13566 521 AAVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF-AEEMLDRVNPDLVVLSPGPGRPSDFD-CKATIDAALARN 598 (720)
T ss_pred CCCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC-ChhHhhhcCCCEEEECCCCCChhhCC-cHHHHHHHHHCC
Confidence 3567789999999999999999999999999999999863 33344445799999999999997654 35677774 778
Q ss_pred CCEEEEechHHHHHHHhCCeeeeccCCcceeee
Q 032797 98 VPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 98 ~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~ 130 (133)
+|+||||+|||+|+.++||+|.+.+.+++|+.+
T Consensus 599 iPILGIClG~QlLa~alGG~V~~~~~~~~G~~~ 631 (720)
T PRK13566 599 LPIFGVCLGLQAIVEAFGGELGQLAYPMHGKPS 631 (720)
T ss_pred CcEEEEehhHHHHHHHcCCEEEECCCCccCCce
Confidence 999999999999999999999988766666533
No 28
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.88 E-value=7.3e-22 Score=170.89 Aligned_cols=107 Identities=31% Similarity=0.528 Sum_probs=88.0
Q ss_pred cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCC
Q 032797 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTV 98 (133)
Q Consensus 20 ~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~ 98 (133)
.+..+++|+|||++++|++++.++|++.|+++.+++++. ..+.+...++|+|||+|||++|.+.+. .++|++ ++.++
T Consensus 512 ~~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~~~~DgLILsgGPGsp~d~~~-~~~I~~~~~~~i 589 (717)
T TIGR01815 512 RGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDERRPDLVVLSPGPGRPADFDV-AGTIDAALARGL 589 (717)
T ss_pred CCCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-ChhhhhhcCCCEEEEcCCCCCchhccc-HHHHHHHHHCCC
Confidence 446778999999999999999999999999999988652 222223347999999999999987643 456666 47889
Q ss_pred CEEEEechHHHHHHHhCCeeeeccCCccee
Q 032797 99 PLFGVCMGLQCIGEAFGDCAFSAWCHAWKK 128 (133)
Q Consensus 99 PvLGIClG~QlLa~a~GG~v~~~~~~~~g~ 128 (133)
|+||||+|||+|+.++||+|.+.+.+++|+
T Consensus 590 PvLGICLG~QlLa~a~GG~V~~~~~p~~G~ 619 (717)
T TIGR01815 590 PVFGVCLGLQGMVEAFGGALDVLPEPVHGK 619 (717)
T ss_pred CEEEECHHHHHHhhhhCCEEEECCCCeeCc
Confidence 999999999999999999999987666664
No 29
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.87 E-value=1.1e-21 Score=159.33 Aligned_cols=101 Identities=29% Similarity=0.496 Sum_probs=85.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG 102 (133)
++||++||+ ++++++.++|++.|+++.++|++ .+.+++...++|||||+|||++|.+...+.+.++++ +.++|+||
T Consensus 192 ~~~I~viD~--g~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilG 268 (382)
T CHL00197 192 QLKIIVIDF--GVKYNILRRLKSFGCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFG 268 (382)
T ss_pred CCEEEEEEC--CcHHHHHHHHHHCCCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEE
Confidence 579999999 78889999999999999999886 466666656899999999999998776666777764 56899999
Q ss_pred EechHHHHHHHhCCeeeeccCCcce
Q 032797 103 VCMGLQCIGEAFGDCAFSAWCHAWK 127 (133)
Q Consensus 103 IClG~QlLa~a~GG~v~~~~~~~~g 127 (133)
||+|||+|+.++||++.+.+....|
T Consensus 269 IClGhQlLa~a~Gg~v~k~~~Gh~g 293 (382)
T CHL00197 269 ICMGHQILSLALEAKTFKLKFGHRG 293 (382)
T ss_pred EcHHHHHHHHHhCCEEeccCCCCCC
Confidence 9999999999999999987643333
No 30
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.87 E-value=1.7e-21 Score=157.07 Aligned_cols=104 Identities=25% Similarity=0.436 Sum_probs=87.3
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF 101 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvL 101 (133)
.+.+|+++|+ ++++++.++|++.|+.++++|++ .+.+++...++|||||+|||++|.+.....++++++ ++ +|+|
T Consensus 166 ~~~~V~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~Pvl 241 (354)
T PRK12838 166 GGKHVALIDF--GYKKSILRSLSKRGCKVTVLPYD-TSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPIL 241 (354)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEE
Confidence 3579999999 68999999999999999999986 456666555899999999999998776667778775 44 9999
Q ss_pred EEechHHHHHHHhCCeeeeccCCcceeee
Q 032797 102 GVCMGLQCIGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 102 GIClG~QlLa~a~GG~v~~~~~~~~g~~~ 130 (133)
|||+|||+|+.++||++.+.+...+|..+
T Consensus 242 GIClG~QlLa~a~Gg~v~kl~~gh~G~~h 270 (354)
T PRK12838 242 GICLGHQLIALALGADTEKLPFGHRGANH 270 (354)
T ss_pred EECHHHHHHHHHhCCEEecCCCCccCCce
Confidence 99999999999999999988755555544
No 31
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.87 E-value=1.5e-21 Score=157.70 Aligned_cols=104 Identities=28% Similarity=0.482 Sum_probs=87.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG 102 (133)
+.+|++||+ +..+++.++|++.|+.+.++|++ .+.+++...++|||||+|||++|.+.....++++++ +.++|+||
T Consensus 177 ~~~I~viD~--G~k~nivr~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilG 253 (360)
T PRK12564 177 KYKVVAIDF--GVKRNILRELAERGCRVTVVPAT-TTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFG 253 (360)
T ss_pred CCEEEEEeC--CcHHHHHHHHHHCCCEEEEEeCC-CCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 579999999 57789999999999999999986 456666545799999999999997766666778875 67899999
Q ss_pred EechHHHHHHHhCCeeeeccCCcceeee
Q 032797 103 VCMGLQCIGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 103 IClG~QlLa~a~GG~v~~~~~~~~g~~~ 130 (133)
||+|||+|+.++||++.+.+...+|..+
T Consensus 254 IClG~QlLa~a~Gg~v~kl~~gh~G~~~ 281 (360)
T PRK12564 254 ICLGHQLLALALGAKTYKMKFGHRGANH 281 (360)
T ss_pred ECHHHHHHHHHhCCcEeccCCCccCCce
Confidence 9999999999999999988754555433
No 32
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.86 E-value=2.5e-21 Score=156.38 Aligned_cols=102 Identities=28% Similarity=0.511 Sum_probs=85.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
.+|+++|+ +..+++.++|++.|+.++++|++ .+.+++....+|||||+|||++|.+.....++++++-.++|+||||
T Consensus 174 ~~i~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIC 250 (358)
T TIGR01368 174 KRVVVIDF--GVKQNILRRLVKRGCEVTVVPYD-TDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGIC 250 (358)
T ss_pred cEEEEEeC--CcHHHHHHHHHHCCCEEEEEcCC-CCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 58999999 67789999999999999999986 4566665446799999999999977666677787752389999999
Q ss_pred chHHHHHHHhCCeeeeccCCcceee
Q 032797 105 MGLQCIGEAFGDCAFSAWCHAWKKF 129 (133)
Q Consensus 105 lG~QlLa~a~GG~v~~~~~~~~g~~ 129 (133)
+|||+|+.++||++.+.+...+|..
T Consensus 251 lG~QlLa~a~Gg~v~kl~~gh~G~n 275 (358)
T TIGR01368 251 LGHQLLALAFGAKTYKMKFGHRGGN 275 (358)
T ss_pred HHHHHHHHHhCCceeccCcCcCCCc
Confidence 9999999999999998765455543
No 33
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.86 E-value=3.3e-21 Score=161.84 Aligned_cols=106 Identities=25% Similarity=0.468 Sum_probs=87.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLG 102 (133)
..+|+|||++++|++.+.++|++.|+.+++++++ .+.+++...++|||||+|||.++++.... ...+. ++.++|+||
T Consensus 3 ~~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~-~~~~~l~~~~~dgIIlsGGp~sv~~~~~p-~~~~~i~~~~~PvLG 80 (511)
T PRK00074 3 HDKILILDFGSQYTQLIARRVRELGVYSEIVPYD-ISAEEIRAFNPKGIILSGGPASVYEEGAP-RADPEIFELGVPVLG 80 (511)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHCCCeEEEEECC-CCHHHHhccCCCEEEECCCCcccccCCCc-cccHHHHhCCCCEEE
Confidence 3579999999999999999999999999999876 45677765567999999999988865431 11222 356899999
Q ss_pred EechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 103 VCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 103 IClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
||+|||+|+.++||+|.+.+..++|.+.+
T Consensus 81 IC~G~QlLa~~lGG~V~~~~~~e~G~~~i 109 (511)
T PRK00074 81 ICYGMQLMAHQLGGKVERAGKREYGRAEL 109 (511)
T ss_pred ECHHHHHHHHHhCCeEEecCCcccceEEE
Confidence 99999999999999999988777777665
No 34
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.86 E-value=6e-21 Score=146.74 Aligned_cols=99 Identities=21% Similarity=0.375 Sum_probs=79.8
Q ss_pred CCCCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCCCCCcCCchHH----HHHHHH-
Q 032797 22 NNKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGIS----LQTVLE- 93 (133)
Q Consensus 22 ~~~~~i~vid~~~-~~~~~i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG~~~~~d~~~~----~~~i~~- 93 (133)
..+++|+||++.+ ++...+.++|++.|.+++++++... .++++ .+||++||+|||++++|...+ .++|++
T Consensus 5 ~~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l--~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~ 82 (239)
T PRK06490 5 RDKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTL--EDHAGAVIFGGPMSANDPDDFIRREIDWISVP 82 (239)
T ss_pred CCCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcc--cccCEEEEECCCCCCCCCchHHHHHHHHHHHH
Confidence 3568999997766 7788999999999999998865311 12233 379999999999999876643 466776
Q ss_pred hCCCCCEEEEechHHHHHHHhCCeeeecc
Q 032797 94 LGPTVPLFGVCMGLQCIGEAFGDCAFSAW 122 (133)
Q Consensus 94 ~~~~~PvLGIClG~QlLa~a~GG~v~~~~ 122 (133)
++.++|+||||+|||+|+.++||+|.+.+
T Consensus 83 ~~~~~PvLGIC~G~Qlla~alGG~V~~~~ 111 (239)
T PRK06490 83 LKENKPFLGICLGAQMLARHLGARVAPHP 111 (239)
T ss_pred HHCCCCEEEECHhHHHHHHHcCCEeecCC
Confidence 47889999999999999999999999875
No 35
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.85 E-value=7.7e-21 Score=165.28 Aligned_cols=110 Identities=25% Similarity=0.433 Sum_probs=83.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhC-C--CeEEEEeCCCCCHHHHc-cCCCCEEEECCCCCCcCCchH--HHHHHHHh-
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGEL-G--YHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQDSGI--SLQTVLEL- 94 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~-G--~~~~v~~~~~~~~~~l~-~~~~DgvIl~GG~~~~~d~~~--~~~~i~~~- 94 (133)
...+||++|||+|||++++++.|++. | +++++++++....+.+. ...+|+|||+||||+|.+... +...+.+.
T Consensus 3 ~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~ 82 (742)
T TIGR01823 3 QQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWELA 82 (742)
T ss_pred CCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHHhc
Confidence 35679999999999999999999985 3 56788887643322222 137999999999999975443 22222222
Q ss_pred -CCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 95 -GPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 95 -~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
..++||||||+|||+|+.++||+|.+.+..++|.++.
T Consensus 83 ~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~~hG~~~~ 120 (742)
T TIGR01823 83 NLDEVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYE 120 (742)
T ss_pred ccCCCcEEEEchhhHHHHhhcCCEEEECCCCCcCeEEE
Confidence 2469999999999999999999999998777877553
No 36
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.84 E-value=3.2e-20 Score=142.29 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=82.1
Q ss_pred CCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHHh-C
Q 032797 24 KNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-G 95 (133)
Q Consensus 24 ~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~~-~ 95 (133)
.++|+||+|-... ...+.++|++.|.++++++.+..........++|++|++|||.++++.. .+.++|+++ +
T Consensus 2 m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~ 81 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLA 81 (234)
T ss_pred CceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHH
Confidence 5689999886543 4679999999999999987642211111123799999999999887653 245777774 7
Q ss_pred CCCCEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 96 PTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 96 ~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
.++|+||||+|||+|+.++||+|.+.+..+.|...+
T Consensus 82 ~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~i 117 (234)
T PRK07053 82 AGLPTLGICLGAQLIARALGARVYPGGQKEIGWAPL 117 (234)
T ss_pred CCCCEEEECccHHHHHHHcCCcEecCCCCeEeEEEE
Confidence 789999999999999999999999876556665543
No 37
>PRK05665 amidotransferase; Provisional
Probab=99.79 E-value=1.2e-18 Score=134.03 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=69.3
Q ss_pred CCeEEEEECCC----------CchHHHHHHHHhCCC--eEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCchHH---
Q 032797 24 KNPIIVIDNYD----------SFTYNLCQYMGELGY--HFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSGIS--- 87 (133)
Q Consensus 24 ~~~i~vid~~~----------~~~~~i~~~l~~~G~--~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~~~--- 87 (133)
.|||+|+..+. +|...+.+.|...+. ++.++...... +.+ ..+|||+||+||+.++++...+
T Consensus 2 ~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~--~~~~dgiiitGs~~~v~~~~pwi~~ 79 (240)
T PRK05665 2 SLRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPAD--DEKFDAYLVTGSKADSFGTDPWIQT 79 (240)
T ss_pred ceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCC--cccCCEEEECCCCCCccccchHHHH
Confidence 45788885543 344446666776664 34444432111 112 2379999999999999876543
Q ss_pred -HHHHHHh-CCCCCEEEEechHHHHHHHhCCeeeeccC
Q 032797 88 -LQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWC 123 (133)
Q Consensus 88 -~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~ 123 (133)
.++|+++ ++++|+||||+|||+||.|+||+|.+.+.
T Consensus 80 l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~ 117 (240)
T PRK05665 80 LKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQ 117 (240)
T ss_pred HHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCC
Confidence 4667774 77899999999999999999999998763
No 38
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.79 E-value=6.3e-19 Score=135.30 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=72.1
Q ss_pred CCCchHHHHHHHHhCCCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCchH----HHHHHHHh-CCCCCEEEEech
Q 032797 33 YDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLEL-GPTVPLFGVCMG 106 (133)
Q Consensus 33 ~~~~~~~i~~~l~~~G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~~----~~~~i~~~-~~~~PvLGIClG 106 (133)
++.|...+.+.+...|.++.+++..... .+++ .+|||+||+|||.++++... +.++|+++ +.++|+||||+|
T Consensus 20 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G 97 (237)
T PRK09065 20 YGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAP--DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYG 97 (237)
T ss_pred cCCHHHHHHHHhccCCceEEEEeccCCCCCCCh--hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChh
Confidence 4556666777777789998887764321 2223 37999999999998887543 35677774 678999999999
Q ss_pred HHHHHHHhCCeeeeccC-Ccceeeee
Q 032797 107 LQCIGEAFGDCAFSAWC-HAWKKFSC 131 (133)
Q Consensus 107 ~QlLa~a~GG~v~~~~~-~~~g~~~~ 131 (133)
||+|+.++||+|.+.+. .+.|...+
T Consensus 98 ~Qlla~alGg~V~~~~~g~e~G~~~v 123 (237)
T PRK09065 98 HQLLAHALGGEVGYNPAGRESGTVTV 123 (237)
T ss_pred HHHHHHHcCCccccCCCCCccceEEE
Confidence 99999999999998753 45555544
No 39
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.78 E-value=2e-18 Score=132.37 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=77.3
Q ss_pred CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHc--cCCCCEEEECCCCCCcCCc---------hHHHHHHH
Q 032797 25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDS---------GISLQTVL 92 (133)
Q Consensus 25 ~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~--~~~~DgvIl~GG~~~~~d~---------~~~~~~i~ 92 (133)
|||+||.+..-. ...+..++++.|+++.++..... +.++ ..+||++|++|||+++.+. ....++|+
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g--~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~ 78 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAG--EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLIN 78 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCC--CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHH
Confidence 688999764333 34577888999999988765321 1222 2479999999999986531 12356777
Q ss_pred Hh-CCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 93 EL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 93 ~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
++ +.++|+||||+|+|+|+.++||+|.+.+..+.|+..+
T Consensus 79 ~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~v 118 (235)
T PRK08250 79 QAIKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIGYFPI 118 (235)
T ss_pred HHHHcCCCEEEEChhHHHHHHHhCceeccCCCCceeEEEE
Confidence 74 7899999999999999999999999887555665543
No 40
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.77 E-value=3e-18 Score=131.99 Aligned_cols=105 Identities=15% Similarity=0.275 Sum_probs=71.0
Q ss_pred eEEEEECCCCch---HHHHHHHHhCCCe---EEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc----hHH----H---
Q 032797 26 PIIVIDNYDSFT---YNLCQYMGELGYH---FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GIS----L--- 88 (133)
Q Consensus 26 ~i~vid~~~~~~---~~i~~~l~~~G~~---~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~----~~~----~--- 88 (133)
+|+|+++..... ..+.+++++.|.. +.+++.+..........+|||+||+||+++++|. ..+ .
T Consensus 3 ~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i 82 (242)
T PRK07567 3 PFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAEL 82 (242)
T ss_pred cEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHH
Confidence 388888766533 4577888887765 5555543221111112379999999999999875 222 1
Q ss_pred -HHHHHh-CCCCCEEEEechHHHHHHHhCCeeeeccCCcceeee
Q 032797 89 -QTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 89 -~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~ 130 (133)
++++.. +.++|+||||+|||+|+.++||+|.+....+.|...
T Consensus 83 ~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~g~e~G~~~ 126 (242)
T PRK07567 83 SGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTYGEPVGAVT 126 (242)
T ss_pred HHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCCCCcCccEE
Confidence 233332 688999999999999999999999985444444433
No 41
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.73 E-value=5.4e-18 Score=138.49 Aligned_cols=108 Identities=20% Similarity=0.331 Sum_probs=90.5
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch--HHHHHHHHhCCCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTV 98 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~--~~~~~i~~~~~~~ 98 (133)
....-+|+|+|++.+|.+.+.+.+|+..+..+++|.+ .+...+....|.||||||||.++++.+ .+...+.++ ++
T Consensus 13 ~~~~d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~-t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~--~v 89 (552)
T KOG1622|consen 13 SSYFDTILILDFGAQYGKVIDRRVRELNVQSEILPLT-TPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFEL--GV 89 (552)
T ss_pred cccCceEEEEeccchhhHHHHHHHHHHhhhhhhccCC-ChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhcc--CC
Confidence 3455689999999999999999999999999999875 455667667899999999999998554 334455544 49
Q ss_pred CEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 99 PLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 99 PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
|+||||+|||+|+..+||+|.+....++|...+
T Consensus 90 pvLGICYGmQ~i~~~~Gg~V~~~~~RE~G~~eI 122 (552)
T KOG1622|consen 90 PVLGICYGMQLINKLNGGTVVKGMVREDGEDEI 122 (552)
T ss_pred cceeehhHHHHHHHHhCCccccccccCCCCceE
Confidence 999999999999999999999998888887665
No 42
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.73 E-value=2.1e-17 Score=123.56 Aligned_cols=81 Identities=23% Similarity=0.404 Sum_probs=64.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHHhCCCC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTV 98 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~~~~~~ 98 (133)
|+|+|||+++++.+++.++|++.|+++++++. .+++. ++|+||+ +|+|++.+... +.+.++ +.++
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~----~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~--~~~~ 71 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRD----PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIK--ACTQ 71 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECC----HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHH--HcCC
Confidence 68999999999999999999999999988864 24554 6899999 66677665432 223333 3469
Q ss_pred CEEEEechHHHHHHHh
Q 032797 99 PLFGVCMGLQCIGEAF 114 (133)
Q Consensus 99 PvLGIClG~QlLa~a~ 114 (133)
|+||||+|||+|+.++
T Consensus 72 PilGIClG~Qll~~~~ 87 (196)
T PRK13170 72 PVLGICLGMQLLGERS 87 (196)
T ss_pred CEEEECHHHHHHhhhc
Confidence 9999999999999998
No 43
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.73 E-value=5e-17 Score=119.90 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=75.7
Q ss_pred eEEEEECCCCc-hHHHHHHHHhCC---CeEEEEeCCCCCH-HHHccCCCCEEEECCCCCCc-CCch----HHHHHHHHh-
Q 032797 26 PIIVIDNYDSF-TYNLCQYMGELG---YHFEVYRNDELTV-EELKRKNPRGVLISPGPGAP-QDSG----ISLQTVLEL- 94 (133)
Q Consensus 26 ~i~vid~~~~~-~~~i~~~l~~~G---~~~~v~~~~~~~~-~~l~~~~~DgvIl~GG~~~~-~d~~----~~~~~i~~~- 94 (133)
||+|+++.... ...+.+++++.| .++++++...... .++ .++||+|++||+.++ .+.. ...++++.+
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~ 78 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDL--DDYDGLVILGGPMSVDEDDYPWLKKLKELIRQAL 78 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCc--ccCCEEEECCCCccCCccCChHHHHHHHHHHHHH
Confidence 57888765443 457889999988 6888877653222 122 489999999999887 3332 245677764
Q ss_pred CCCCCEEEEechHHHHHHHhCCeeeeccCC-cceeee
Q 032797 95 GPTVPLFGVCMGLQCIGEAFGDCAFSAWCH-AWKKFS 130 (133)
Q Consensus 95 ~~~~PvLGIClG~QlLa~a~GG~v~~~~~~-~~g~~~ 130 (133)
++++|+||||+|||+|+.++||+|.+.+.. +.|...
T Consensus 79 ~~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~~~ 115 (188)
T cd01741 79 AAGKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFP 115 (188)
T ss_pred HCCCCEEEECccHHHHHHHhCCEEecCCCcceeEEEE
Confidence 778999999999999999999999998754 445443
No 44
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.4e-17 Score=138.50 Aligned_cols=113 Identities=27% Similarity=0.453 Sum_probs=83.6
Q ss_pred cCCCCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHH----Hcc-CCCCEEEECCCCCCcCCchH--HHHHH
Q 032797 20 SKNNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEE----LKR-KNPRGVLISPGPGAPQDSGI--SLQTV 91 (133)
Q Consensus 20 ~~~~~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~----l~~-~~~DgvIl~GG~~~~~d~~~--~~~~i 91 (133)
.+.+..++++||+||+|+.++.+.|.. .|..++++..++...++ +.. --||+||+++|||+|.-... ...-+
T Consensus 10 ~~~~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl 89 (767)
T KOG1224|consen 10 KSLPRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRL 89 (767)
T ss_pred hhhhheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHH
Confidence 345558999999999999999999977 46655555443343333 221 25999999999999943222 12222
Q ss_pred HHhCCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797 92 LELGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV 132 (133)
Q Consensus 92 ~~~~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~~ 132 (133)
....+++|+||||+|+|.|+.+.|+.|...+++.||.++-+
T Consensus 90 ~~~~~~iPilGICLGfQal~l~hGA~v~~~n~p~HGrvs~i 130 (767)
T KOG1224|consen 90 LLECRDIPILGICLGFQALGLVHGAHVVHANEPVHGRVSGI 130 (767)
T ss_pred HHhcCCCceeeeehhhHhHhhhcccceecCCCcccceeeeE
Confidence 22356899999999999999999999999999999988743
No 45
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.72 E-value=1.9e-17 Score=123.41 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=71.5
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc------hHHHHHHHHh-CCCCC
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GPTVP 99 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~------~~~~~~i~~~-~~~~P 99 (133)
|+|||++.++...+.+.|++.|+++++++.. +++. ++|+||++|| +++.+. ....+.++++ ++++|
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~----~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~p 73 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDP----EEIL--SADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKP 73 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcCh----HHhc--cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCc
Confidence 5899999999999999999999999988742 3454 6999999664 443321 1135677774 67999
Q ss_pred EEEEechHHHHHHH------------hCCeeeeccC
Q 032797 100 LFGVCMGLQCIGEA------------FGDCAFSAWC 123 (133)
Q Consensus 100 vLGIClG~QlLa~a------------~GG~v~~~~~ 123 (133)
+||||+|+|+|+.+ ++|++.+.+.
T Consensus 74 ilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~ 109 (198)
T cd01748 74 FLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPA 109 (198)
T ss_pred EEEECHHHHHhccccccCCCCCCCCCcceEEEECCC
Confidence 99999999999998 8899998653
No 46
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.70 E-value=1.1e-16 Score=119.75 Aligned_cols=90 Identities=20% Similarity=0.294 Sum_probs=71.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCCC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTVP 99 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~~P 99 (133)
|||+|||+++++...+.++|+++|+++++++. .+++. ++|++|++|| +.+.+.. ...+.++++ ++++|
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~----~~~~~--~~d~iii~G~-~~~~~~~~~~~~~~~~i~~~~~~~~P 73 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD----PEEIL--DADGIVLPGV-GAFGAAMENLSPLRDVILEAARSGKP 73 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECC----HHHHc--cCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999988753 24453 7999999774 3332221 235667764 78899
Q ss_pred EEEEechHHHHHHH------------hCCeeeec
Q 032797 100 LFGVCMGLQCIGEA------------FGDCAFSA 121 (133)
Q Consensus 100 vLGIClG~QlLa~a------------~GG~v~~~ 121 (133)
+||||+|+|+|+.+ +||++.+.
T Consensus 74 ilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~ 107 (200)
T PRK13143 74 FLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRF 107 (200)
T ss_pred EEEECHHHHHHhhhhccCCCCCCcceeeEEEEEc
Confidence 99999999999986 78998875
No 47
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.69 E-value=1.3e-16 Score=120.34 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=69.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHHh-
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLEL- 94 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~~- 94 (133)
.|||.|||++.++..++.++|++.|. ++.+++ +.+++. ++|+|||+|+.....+... ..++++..
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~----~~~~l~--~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~ 74 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTA----DPDAVA--AADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVL 74 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEEC----CHHHhc--CCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHH
Confidence 36899999999999999999999998 444432 345664 8999999886332211111 12334444
Q ss_pred CCCCCEEEEechHHHHHHH------------hCCeeeec
Q 032797 95 GPTVPLFGVCMGLQCIGEA------------FGDCAFSA 121 (133)
Q Consensus 95 ~~~~PvLGIClG~QlLa~a------------~GG~v~~~ 121 (133)
+.++|+||||+|||+|+.+ ++|+|.+.
T Consensus 75 ~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~ 113 (209)
T PRK13146 75 AAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRF 113 (209)
T ss_pred hCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEc
Confidence 5889999999999999999 89999886
No 48
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.68 E-value=1.2e-16 Score=118.71 Aligned_cols=88 Identities=17% Similarity=0.287 Sum_probs=66.1
Q ss_pred CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCC--------------ch---HHHHHHHH
Q 032797 33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQD--------------SG---ISLQTVLE 93 (133)
Q Consensus 33 ~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d--------------~~---~~~~~i~~ 93 (133)
++++++++.++|+..|+.+.+++.+. +.++++. ..+|||||+||+....+ .. ...+++++
T Consensus 17 ~~~~~~~~~~~l~~~G~~~~iv~~~~-~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 95 (189)
T cd01745 17 RDYLNQYYVDAVRKAGGLPVLLPPVD-DEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRA 95 (189)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCCCC-ChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHH
Confidence 45667889999999999999988752 3333221 37999999999864211 11 12566776
Q ss_pred h-CCCCCEEEEechHHHHHHHhCCeeeec
Q 032797 94 L-GPTVPLFGVCMGLQCIGEAFGDCAFSA 121 (133)
Q Consensus 94 ~-~~~~PvLGIClG~QlLa~a~GG~v~~~ 121 (133)
+ +.++|+||||+|||+|+.++||+|.+.
T Consensus 96 ~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~ 124 (189)
T cd01745 96 ALERGKPILGICRGMQLLNVALGGTLYQD 124 (189)
T ss_pred HHHCCCCEEEEcchHHHHHHHhCCeEEcC
Confidence 4 778999999999999999999999875
No 49
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.68 E-value=1.8e-16 Score=118.34 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=70.2
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCCC
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTV 98 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~-~~~~~ 98 (133)
||+|||++.++..++.++|++.|++++++.. .+++. ++|+||++|+ +++.+.. ...+.+++ .+.++
T Consensus 1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~----~~~l~--~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~ 73 (199)
T PRK13181 1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSD----PEEIA--GADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQ 73 (199)
T ss_pred CEEEEeCCCChHHHHHHHHHHCCCcEEEEcC----hHHhc--cCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCC
Confidence 3899999999999999999999999888743 34554 7999999664 4443211 12455665 47889
Q ss_pred CEEEEechHHHHHHH-----------hCCeeeecc
Q 032797 99 PLFGVCMGLQCIGEA-----------FGDCAFSAW 122 (133)
Q Consensus 99 PvLGIClG~QlLa~a-----------~GG~v~~~~ 122 (133)
|+||||+|+|+|+.+ +|++|.+.+
T Consensus 74 PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~ 108 (199)
T PRK13181 74 PVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFR 108 (199)
T ss_pred CEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcC
Confidence 999999999999999 789998864
No 50
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.67 E-value=1.9e-16 Score=118.47 Aligned_cols=90 Identities=20% Similarity=0.312 Sum_probs=64.8
Q ss_pred EEEEEC-CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCCCE
Q 032797 27 IIVIDN-YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTVPL 100 (133)
Q Consensus 27 i~vid~-~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~~Pv 100 (133)
|+++++ ...+...+.+++++.|.+++++... +.+++. ++|+|||+||++++.+.. ...++|+++ +.++|+
T Consensus 5 vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~--~~~~l~--~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pi 80 (200)
T PRK13527 5 VLALQGDVEEHIDALKRALDELGIDGEVVEVR--RPGDLP--DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPI 80 (200)
T ss_pred EEEECCccHHHHHHHHHHHHhcCCCeEEEEeC--ChHHhc--cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeE
Confidence 344443 2233456788999999988887764 234554 799999999988664221 235677774 788999
Q ss_pred EEEechHHHHHHHhCC-eeee
Q 032797 101 FGVCMGLQCIGEAFGD-CAFS 120 (133)
Q Consensus 101 LGIClG~QlLa~a~GG-~v~~ 120 (133)
||||+|+|+|+.++|| ++..
T Consensus 81 lGIC~G~Qll~~~~gg~~v~~ 101 (200)
T PRK13527 81 LGTCAGLILLAKEVGDDRVTK 101 (200)
T ss_pred EEECHHHHHHHhhhcCCccCC
Confidence 9999999999999998 4433
No 51
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.67 E-value=5.8e-16 Score=115.97 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=63.4
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHH--hCCC
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE--LGPT 97 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~--~~~~ 97 (133)
||+|||++.++.+++.++|++.|.++.+++. .+++. .+|+||| +|++++.+... +.+.+++ ++.+
T Consensus 1 ~i~iid~g~~n~~~v~~~l~~~g~~~~~~~~----~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~ 73 (201)
T PRK13152 1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKN----PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQK 73 (201)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCeEEEECC----HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCC
Confidence 3899999999999999999999998887654 24554 6999999 66677654422 1244444 3679
Q ss_pred CCEEEEechHHHHHHH
Q 032797 98 VPLFGVCMGLQCIGEA 113 (133)
Q Consensus 98 ~PvLGIClG~QlLa~a 113 (133)
+|+||||+|||+|+.+
T Consensus 74 ~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 74 KPILGICLGMQLFLER 89 (201)
T ss_pred CcEEEECHhHHHHhhc
Confidence 9999999999999997
No 52
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.66 E-value=3e-16 Score=117.63 Aligned_cols=90 Identities=22% Similarity=0.234 Sum_probs=70.8
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHHh-CCCC
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-GPTV 98 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~~-~~~~ 98 (133)
+|+|||++.++...+.+.|++.|+++++++. .+++. ++|+||++|| +.+.+.. ...++|+++ +.++
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~ 73 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSD----PEEIL--AADGVILPGV-GAFPDAMANLRERGLDEVIKEAVASGK 73 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcChHHHHHHHHHCCC
Confidence 5899999999999999999999999998753 34554 7999999775 3322211 134667664 7889
Q ss_pred CEEEEechHHHHHHH------------hCCeeeecc
Q 032797 99 PLFGVCMGLQCIGEA------------FGDCAFSAW 122 (133)
Q Consensus 99 PvLGIClG~QlLa~a------------~GG~v~~~~ 122 (133)
|+||||+|+|+|+.+ +||++.+.+
T Consensus 74 pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~ 109 (205)
T PRK13141 74 PLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFP 109 (205)
T ss_pred cEEEECHHHHHhhhccccCCCCCccceEEEEEEEcC
Confidence 999999999999997 778988765
No 53
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.64 E-value=1e-15 Score=133.64 Aligned_cols=96 Identities=28% Similarity=0.486 Sum_probs=80.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCE
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL 100 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~Pv 100 (133)
+...+|+.+|+ +...+..|+|...|+++.++|++. ... ..+|||+++++|||+|.-.....+-++++ +.++|+
T Consensus 170 Gk~~~I~aiDc--G~K~N~IRcL~~RGa~vtVvPw~~-~i~---~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~Pv 243 (1435)
T KOG0370|consen 170 GKSLRILAIDC--GLKYNQIRCLVKRGAEVTVVPWDY-PIA---KEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPV 243 (1435)
T ss_pred CcccEEEEccc--CchHHHHHHHHHhCceEEEecCCc-ccc---ccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCe
Confidence 44568999998 678899999999999999999862 222 23799999999999999887777777774 556999
Q ss_pred EEEechHHHHHHHhCCeeeeccC
Q 032797 101 FGVCMGLQCIGEAFGDCAFSAWC 123 (133)
Q Consensus 101 LGIClG~QlLa~a~GG~v~~~~~ 123 (133)
+|||+|||+||.|.|++..+++.
T Consensus 244 fGIClGHQllA~AaGakT~KmKy 266 (1435)
T KOG0370|consen 244 FGICLGHQLLALAAGAKTYKMKY 266 (1435)
T ss_pred EEEehhhHHHHHhhCCceEEeec
Confidence 99999999999999999998754
No 54
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.63 E-value=1.7e-15 Score=113.22 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=69.1
Q ss_pred CCCchHHHHHHHHhCCCeEEEEeCCC---CCHHHHccCCCCEEEECCCCCCcCCchHHH----HHHHHh-CCCCCEEEEe
Q 032797 33 YDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISL----QTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 33 ~~~~~~~i~~~l~~~G~~~~v~~~~~---~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~----~~i~~~-~~~~PvLGIC 104 (133)
|++|.+.++..|.+.|.++++++.-. +..+|++ +|||++|||+..++.++..|+ .+++.+ ..++||+|||
T Consensus 23 yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGIC 100 (245)
T KOG3179|consen 23 YGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGIC 100 (245)
T ss_pred hcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEe
Confidence 56677778888888898888776421 2234554 699999999998887665543 344554 4679999999
Q ss_pred chHHHHHHHhCCeeeeccCC
Q 032797 105 MGLQCIGEAFGDCAFSAWCH 124 (133)
Q Consensus 105 lG~QlLa~a~GG~v~~~~~~ 124 (133)
+|||++|++.||+|.+++..
T Consensus 101 FGHQiiara~Gg~Vgra~KG 120 (245)
T KOG3179|consen 101 FGHQIIARAKGGKVGRAPKG 120 (245)
T ss_pred ccHHHHHHhhCCccccCCCC
Confidence 99999999999999998753
No 55
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.63 E-value=1.6e-15 Score=113.24 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=68.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHH-hCCCCC
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVP 99 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~-~~~~~P 99 (133)
|+|||++.++...+.++|+..|+++++++.+ +++. ++|+||++| ++++.+... ...++++ ++.++|
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~----~~l~--~~d~lii~G-~~~~~~~~~~l~~~~~~~l~~~~~~~~~p 73 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDS----KEAE--LADKLILPG-VGAFGAAMARLRENGLDLFVELVVRLGKP 73 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCH----HHhc--cCCEEEECC-CCCHHHHHHHHHHcCcHHHHHHHHhCCCC
Confidence 5799999999999999999999999998743 3443 799999955 444432211 1233354 478899
Q ss_pred EEEEechHHHHHHH------------hCCeeeecc
Q 032797 100 LFGVCMGLQCIGEA------------FGDCAFSAW 122 (133)
Q Consensus 100 vLGIClG~QlLa~a------------~GG~v~~~~ 122 (133)
+||||+|+|+|+.+ +||+|.+.+
T Consensus 74 vlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~ 108 (196)
T TIGR01855 74 VLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLE 108 (196)
T ss_pred EEEECHHHHHhhhccccCCCCCCcceeeEEEEECC
Confidence 99999999999999 789998763
No 56
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.63 E-value=2.7e-15 Score=113.49 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=68.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPT 97 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~-~~~~ 97 (133)
|+|.|||++.++..++.++|+..|+++.+++.+ +++. ++|+||+ ||++++.... .+.+.|++ ++++
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~----~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~ 74 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSE----SELA--QVHALVL-PGVGSFDLAMKKLEKKGLITPIKKWIAEG 74 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCH----HHhh--hCCEEEE-CCCCchHHHHHHHHHCCHHHHHHHHHHcC
Confidence 579999999999999999999999999988642 3453 6899887 6667764221 12344555 4678
Q ss_pred CCEEEEechHHHHHHH-----------hCCeeeec
Q 032797 98 VPLFGVCMGLQCIGEA-----------FGDCAFSA 121 (133)
Q Consensus 98 ~PvLGIClG~QlLa~a-----------~GG~v~~~ 121 (133)
+|+||||+|||+|++. ++|+|.+.
T Consensus 75 ~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~ 109 (210)
T CHL00188 75 NPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRL 109 (210)
T ss_pred CCEEEECHHHHHHhhccccCCcCCccceeEEEEEC
Confidence 9999999999999987 56667655
No 57
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.60 E-value=6.7e-15 Score=109.47 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=65.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCCC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTVP 99 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~~P 99 (133)
|+|.|+++...+... .++|+..|+++..++. .+++. ++|++|++||+.+..+.. .+.++++++ ++++|
T Consensus 2 m~~~i~~~~g~~~~~-~~~l~~~g~~~~~~~~----~~~l~--~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~P 74 (189)
T PRK13525 2 MKIGVLALQGAVREH-LAALEALGAEAVEVRR----PEDLD--EIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLP 74 (189)
T ss_pred CEEEEEEcccCHHHH-HHHHHHCCCEEEEeCC----hhHhc--cCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCe
Confidence 678999887666644 5778899999888763 24443 799999999987554321 234677775 78999
Q ss_pred EEEEechHHHHHHHhCC
Q 032797 100 LFGVCMGLQCIGEAFGD 116 (133)
Q Consensus 100 vLGIClG~QlLa~a~GG 116 (133)
+||||+|+|+|+.++||
T Consensus 75 ilGIC~G~QlL~~~~gg 91 (189)
T PRK13525 75 VFGTCAGMILLAKEIEG 91 (189)
T ss_pred EEEECHHHHHHHhhccc
Confidence 99999999999999999
No 58
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.60 E-value=4.9e-15 Score=110.73 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=65.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHH-hCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGP 96 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~-~~~ 96 (133)
.++|+|||++.++.+++.++|++.|+++.+.. +++++. .+|+||+ +|.|+..+... +.+.|++ ...
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~----d~~~i~--~AD~liL-PGVGaf~~am~~L~~~gl~~~i~~~~~~ 73 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSR----DPEEIL--KADKLIL-PGVGAFGAAMANLRERGLIEAIKEAVES 73 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEec----CHHHHh--hCCEEEe-cCCCCHHHHHHHHHhcchHHHHHHHHhc
Confidence 37899999999999999999999999988764 245664 7999999 66776654432 3566766 467
Q ss_pred CCCEEEEechHHHHHH
Q 032797 97 TVPLFGVCMGLQCIGE 112 (133)
Q Consensus 97 ~~PvLGIClG~QlLa~ 112 (133)
++|+||||+|||+|.+
T Consensus 74 ~kP~LGIClGMQlLfe 89 (204)
T COG0118 74 GKPFLGICLGMQLLFE 89 (204)
T ss_pred CCCEEEEeHhHHhhhh
Confidence 7999999999999976
No 59
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.59 E-value=5.5e-15 Score=114.58 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=59.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC---HHHHccCCCCEEEECCCCCCcC--------Cc--------hHHHHHHHH-hCCCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQ--------DS--------GISLQTVLE-LGPTV 98 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~---~~~l~~~~~DgvIl~GG~~~~~--------d~--------~~~~~~i~~-~~~~~ 98 (133)
.+.+++..+|..+.+++....+ .+++. ..+||+|++||+.+.. +. ....++++. +++++
T Consensus 30 ~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l-~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~ 108 (254)
T PRK11366 30 KYLNAIIHAGGLPIALPHALAEPSLLEQLL-PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRI 108 (254)
T ss_pred HHHHHHHHCCCEEEEecCCCCCHHHHHHHH-HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCC
Confidence 4667788889888888753222 22222 3699999999976441 10 113567777 47899
Q ss_pred CEEEEechHHHHHHHhCCeeeec
Q 032797 99 PLFGVCMGLQCIGEAFGDCAFSA 121 (133)
Q Consensus 99 PvLGIClG~QlLa~a~GG~v~~~ 121 (133)
|+||||+|||+|+.++||+|.+.
T Consensus 109 PILGICrG~Qllnva~GGtl~~~ 131 (254)
T PRK11366 109 PIFAICRGLQELVVATGGSLHRK 131 (254)
T ss_pred CEEEECHhHHHHHHHhCCeEeec
Confidence 99999999999999999999975
No 60
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.59 E-value=2.6e-15 Score=115.28 Aligned_cols=90 Identities=24% Similarity=0.319 Sum_probs=61.9
Q ss_pred ECCCCchHHHHHHHHhCCCeEEEEeCCCCC--HH---HHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEe
Q 032797 31 DNYDSFTYNLCQYMGELGYHFEVYRNDELT--VE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC 104 (133)
Q Consensus 31 d~~~~~~~~i~~~l~~~G~~~~v~~~~~~~--~~---~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC 104 (133)
|+|+++...+..+..+.+..+.+...+... .. +.. .++||||++||++.+.... ..++++. ++.++|+||||
T Consensus 14 day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l-~~~dgivl~GG~~~~~~~~-~~~~i~~~~~~~~PvlGIC 91 (235)
T cd01746 14 DAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEAL-KGADGILVPGGFGIRGVEG-KILAIKYARENNIPFLGIC 91 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhh-ccCCEEEECCCCCCcchhh-HHHHHHHHHHCCceEEEEE
Confidence 444455555666666666666665433111 11 111 3799999999998776543 3456666 47899999999
Q ss_pred chHHHHHHHhCCeeeecc
Q 032797 105 MGLQCIGEAFGDCAFSAW 122 (133)
Q Consensus 105 lG~QlLa~a~GG~v~~~~ 122 (133)
+|||+|+.++||++.+.+
T Consensus 92 lG~Q~l~~~~g~~~~~~~ 109 (235)
T cd01746 92 LGMQLAVIEFARNVLGLP 109 (235)
T ss_pred hHHHHHHHHHHHHhcCCc
Confidence 999999999999988654
No 61
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.57 E-value=3.8e-14 Score=108.16 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=74.7
Q ss_pred CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC--------CchHHHHHHHHh-
Q 032797 25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--------DSGISLQTVLEL- 94 (133)
Q Consensus 25 ~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~--------d~~~~~~~i~~~- 94 (133)
|||+|+++..++ ...+.++|++.|+++++++.... ++ .++|+|||+||+..-. ......++++++
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~---~l--~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~ 75 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG---SL--PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFA 75 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCC---CC--CCCCEEEECCCCcccccccccchhcchHHHHHHHHHH
Confidence 589999998776 46788999999999988876421 23 3799999999864211 012245667764
Q ss_pred CCCCCEEEEechHHHHHHH--hCCeeeeccCCccee
Q 032797 95 GPTVPLFGVCMGLQCIGEA--FGDCAFSAWCHAWKK 128 (133)
Q Consensus 95 ~~~~PvLGIClG~QlLa~a--~GG~v~~~~~~~~g~ 128 (133)
+.++|++|||.|+|+|+.+ ++|++.+....+|+.
T Consensus 76 ~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~ 111 (227)
T TIGR01737 76 EKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFIC 111 (227)
T ss_pred HcCCEEEEECHHHHHHHHcCCCCCceeecCCCceEE
Confidence 7899999999999999996 999998876555543
No 62
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.55 E-value=2.6e-14 Score=108.42 Aligned_cols=84 Identities=25% Similarity=0.398 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCC--cCC--------chH--------HHHHHHHh-CC
Q 032797 38 YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGA--PQD--------SGI--------SLQTVLEL-GP 96 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~--~~d--------~~~--------~~~~i~~~-~~ 96 (133)
..+.+++..+|+.+.++|+. .+.+++.. ..+||||++||.-+ |.. ... ..++++.. ++
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~-~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~ 105 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYD-ADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGR 105 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS---HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHcCCEEEEEccC-CCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhc
Confidence 46888999999999999986 23333321 38999999999832 211 110 23455553 78
Q ss_pred CCCEEEEechHHHHHHHhCCeeeecc
Q 032797 97 TVPLFGVCMGLQCIGEAFGDCAFSAW 122 (133)
Q Consensus 97 ~~PvLGIClG~QlLa~a~GG~v~~~~ 122 (133)
++|+||||+|||+|+.++||++.+.-
T Consensus 106 ~~PilGICrG~Q~lnv~~GGtl~q~~ 131 (217)
T PF07722_consen 106 GKPILGICRGMQLLNVAFGGTLYQDI 131 (217)
T ss_dssp T--EEEETHHHHHHHHHCCSSEESCC
T ss_pred CCCEEEEcHHHHHHHHHhCCCceeec
Confidence 99999999999999999999998653
No 63
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.54 E-value=1.4e-14 Score=110.86 Aligned_cols=82 Identities=17% Similarity=0.306 Sum_probs=58.5
Q ss_pred HHHHHHHhCCCeEEEEeCC--CCCHHHHccCCCCEEEECCCCC-CcCC----------------chHHHHHHHH-hCCCC
Q 032797 39 NLCQYMGELGYHFEVYRND--ELTVEELKRKNPRGVLISPGPG-APQD----------------SGISLQTVLE-LGPTV 98 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~--~~~~~~l~~~~~DgvIl~GG~~-~~~d----------------~~~~~~~i~~-~~~~~ 98 (133)
.+.++...+|.-+.++|.. ..+..++. ...||+|+|||.. +|.- +..++.+|++ +++++
T Consensus 30 ~yv~ai~~aGg~pillP~~~d~~~~~~~l-~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~i 108 (243)
T COG2071 30 DYVDAIIKAGGIPILLPALEDPEDARQYL-DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGI 108 (243)
T ss_pred HHHHHHHHcCCceEEecCCCCHHHHHHHH-hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCC
Confidence 3566666688888888842 11233333 3799999999932 2211 1124678887 48999
Q ss_pred CEEEEechHHHHHHHhCCeeeec
Q 032797 99 PLFGVCMGLQCIGEAFGDCAFSA 121 (133)
Q Consensus 99 PvLGIClG~QlLa~a~GG~v~~~ 121 (133)
|+||||+|+|+|+.||||++++-
T Consensus 109 PILgICRG~QllNVa~GGtL~q~ 131 (243)
T COG2071 109 PILGICRGLQLLNVALGGTLYQD 131 (243)
T ss_pred CEEEEccchHHHHHHhcCeeehh
Confidence 99999999999999999999863
No 64
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.54 E-value=2.6e-14 Score=106.87 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=63.5
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHHHHHhCCCCC
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTVP 99 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~i~~~~~~~P 99 (133)
||+|||++.++..++.++|++.|+++.+++. .+++. ++|+||++|+ +++.+... +.+.|++ ..++|
T Consensus 1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~----~~~l~--~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~-~~g~P 72 (192)
T PRK13142 1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNT----SKIID--QAETIILPGV-GHFKDAMSEIKRLNLNAILAK-NTDKK 72 (192)
T ss_pred CEEEEEcCCccHHHHHHHHHHcCCCEEEEeC----HHHhc--cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH-hCCCe
Confidence 3899999999999999999999999988753 35664 6999988554 66543322 3455655 56899
Q ss_pred EEEEechHHHHHHHh
Q 032797 100 LFGVCMGLQCIGEAF 114 (133)
Q Consensus 100 vLGIClG~QlLa~a~ 114 (133)
+||||+|||+|++..
T Consensus 73 vlGIClGmQlL~~~~ 87 (192)
T PRK13142 73 MIGICLGMQLMYEHS 87 (192)
T ss_pred EEEECHHHHHHhhhc
Confidence 999999999999976
No 65
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.53 E-value=5.8e-14 Score=106.20 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=63.4
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCCCC
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVP 99 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~-~~~~~P 99 (133)
|+|||++.++..++.++++..+.++.+++. .+++. ++|+||++|+ +++.+.. .+.+.|++ ..+++|
T Consensus 2 i~iidyg~gNl~s~~~al~~~~~~~~~~~~----~~~l~--~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~p 74 (210)
T PRK14004 2 IAILDYGMGNIHSCLKAVSLYTKDFVFTSD----PETIE--NSKALILPGD-GHFDKAMENLNSTGLRSTIDKHVESGKP 74 (210)
T ss_pred EEEEECCCchHHHHHHHHHHcCCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHcCCC
Confidence 899999999999999999999988876642 45564 7999998665 5543321 13455555 478999
Q ss_pred EEEEechHHHHHHHhC
Q 032797 100 LFGVCMGLQCIGEAFG 115 (133)
Q Consensus 100 vLGIClG~QlLa~a~G 115 (133)
+||||+|||+|+.+++
T Consensus 75 ilGiC~G~Q~l~~~~~ 90 (210)
T PRK14004 75 LFGICIGFQILFESSE 90 (210)
T ss_pred EEEECHhHHHHHHhcc
Confidence 9999999999999865
No 66
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.50 E-value=4.4e-14 Score=118.62 Aligned_cols=102 Identities=18% Similarity=0.306 Sum_probs=71.3
Q ss_pred ccccCCCCCeEEEEECCCCch---HHHHHHHHhCCC----eEEEEeCCCCCHHHHc------cCCCCEEEECCCCCCcCC
Q 032797 17 DKKSKNNKNPIIVIDNYDSFT---YNLCQYMGELGY----HFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQD 83 (133)
Q Consensus 17 ~~~~~~~~~~i~vid~~~~~~---~~i~~~l~~~G~----~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~~~~d 83 (133)
.-..+....+|+++.-|.... .++.++|..+|+ .+.+.+.+ .+++. -.++|||+++||++++.+
T Consensus 282 ~~~~~~~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~---se~i~~~~~~~L~~~dGIiLpGG~G~~~~ 358 (525)
T TIGR00337 282 KFINPKHEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWID---SEDLEEEGAEFLKGVDGILVPGGFGERGV 358 (525)
T ss_pred HhhCCCCCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEec---HHHhhhhhhhhhcCCCEEEeCCCCCChhh
Confidence 334455568999995553332 468888988876 33333322 22221 136999999999998876
Q ss_pred chHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeeeecc
Q 032797 84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSAW 122 (133)
Q Consensus 84 ~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~ 122 (133)
.+.. +.++.+ ++++|+||||+|||+|+.++|+++...+
T Consensus 359 ~g~i-~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~ 397 (525)
T TIGR00337 359 EGKI-LAIKYARENNIPFLGICLGMQLAVIEFARNVLGLK 397 (525)
T ss_pred cChH-HHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCC
Confidence 5543 466664 7889999999999999999999988753
No 67
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.47 E-value=9.4e-14 Score=116.73 Aligned_cols=102 Identities=18% Similarity=0.331 Sum_probs=70.6
Q ss_pred ccccccCCCCCeEEEEECCCCch---HHHHHHHHhC----CCeEEEEeCCCCCH------HHHccCCCCEEEECCCCCCc
Q 032797 15 LDDKKSKNNKNPIIVIDNYDSFT---YNLCQYMGEL----GYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAP 81 (133)
Q Consensus 15 ~~~~~~~~~~~~i~vid~~~~~~---~~i~~~l~~~----G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG~~~~ 81 (133)
.++-+.+....+|+++.-|.... .++.++|+.+ +.++.+.+.+.... +.+ .++||||++||++++
T Consensus 279 ~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L--~~~DGIIlpGGfG~~ 356 (533)
T PRK05380 279 VERLKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELL--KGVDGILVPGGFGER 356 (533)
T ss_pred HHHHhCCCCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHh--hcCCEEEecCCCCcc
Confidence 34445556678999996554332 3566777664 45556555432221 122 379999999999876
Q ss_pred CCchHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeee
Q 032797 82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 82 ~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
...+. .++++.+ ++++|+||||+|||+|+.++||++.
T Consensus 357 ~~~g~-i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~ 394 (533)
T PRK05380 357 GIEGK-ILAIRYARENNIPFLGICLGMQLAVIEFARNVL 394 (533)
T ss_pred ccccH-HHHHHHHHHCCCcEEEEchHHHHHHHHhccccc
Confidence 65543 4566664 7899999999999999999999984
No 68
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.45 E-value=6.2e-13 Score=112.52 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=65.5
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHHh-C
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-G 95 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~~-~ 95 (133)
...+|+|||++.++..++.++|++.|+++.+++. .+++. .+|++||+|+ +++.+.. .+.+.|+++ +
T Consensus 5 ~~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~----~~~l~--~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~ 77 (538)
T PLN02617 5 ADSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQT----PEDIL--NADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQ 77 (538)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHCCCeEEEECC----hhhhc--cCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHH
Confidence 3468999999999999999999999999887753 34553 7999999664 4443211 134566664 7
Q ss_pred CCCCEEEEechHHHHHHHh
Q 032797 96 PTVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 96 ~~~PvLGIClG~QlLa~a~ 114 (133)
.++|+||||+|||+|++++
T Consensus 78 ~g~PvLGIC~G~QlLa~~~ 96 (538)
T PLN02617 78 NDRPFLGICLGLQLLFESS 96 (538)
T ss_pred cCCCEEEECHHHHHHhhhh
Confidence 7899999999999999973
No 69
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.45 E-value=1.4e-12 Score=99.16 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=74.1
Q ss_pred CeEEEEECCCCch-HHHHHHHH-hCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC--------CchHHHHHHHHh
Q 032797 25 NPIIVIDNYDSFT-YNLCQYMG-ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--------DSGISLQTVLEL 94 (133)
Q Consensus 25 ~~i~vid~~~~~~-~~i~~~l~-~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~--------d~~~~~~~i~~~ 94 (133)
|||+||.+.+++. ..+.++|+ ..|+++..++..+ .++. ++|+|||+||+..-. ....+.++++++
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~---~~l~--~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~ 75 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE---TDLD--GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEF 75 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc---CCCC--CCCEEEECCCCchhhhhccchhhhchHHHHHHHHH
Confidence 5899999988884 56889998 8999988776532 2333 799999999864211 112345677764
Q ss_pred -CCCCCEEEEechHHHHHHH--hCCeeeeccCCcc
Q 032797 95 -GPTVPLFGVCMGLQCIGEA--FGDCAFSAWCHAW 126 (133)
Q Consensus 95 -~~~~PvLGIClG~QlLa~a--~GG~v~~~~~~~~ 126 (133)
++++|++|||.|+|+|+.+ ++|++.+.....|
T Consensus 76 ~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~ 110 (219)
T PRK03619 76 AEKGKPVLGICNGFQILTEAGLLPGALTRNASLKF 110 (219)
T ss_pred HHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcE
Confidence 7899999999999999998 9999998876555
No 70
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.43 E-value=5.9e-13 Score=98.77 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=59.7
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC----chHHHHHHHHh-CCCCCE
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTVPL 100 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d----~~~~~~~i~~~-~~~~Pv 100 (133)
||.|+.....+. +..++|++.|+++.+++. .+++. ++|++||+||+++..+ ...+.+.|+++ ++++|+
T Consensus 1 ~igvl~~qg~~~-e~~~~l~~~g~~~~~v~~----~~~l~--~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pi 73 (184)
T TIGR03800 1 KIGVLALQGAVR-EHARALEALGVEGVEVKR----PEQLD--EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPV 73 (184)
T ss_pred CEEEEEccCCHH-HHHHHHHHCCCEEEEECC----hHHhc--cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcE
Confidence 355554433443 466899999999988764 34453 7999999999765422 12245667774 789999
Q ss_pred EEEechHHHHHHHh
Q 032797 101 FGVCMGLQCIGEAF 114 (133)
Q Consensus 101 LGIClG~QlLa~a~ 114 (133)
+|||.|+|+|++++
T Consensus 74 lGIC~G~qlL~~~~ 87 (184)
T TIGR03800 74 FGTCAGLIMLAKEI 87 (184)
T ss_pred EEECHHHHHHHhhh
Confidence 99999999999997
No 71
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.41 E-value=7.1e-13 Score=97.99 Aligned_cols=81 Identities=22% Similarity=0.438 Sum_probs=59.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CCCCCEE
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVPLF 101 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~----~~~~~~i~~~-~~~~PvL 101 (133)
|+++++ .+...+ ++|++.|+++..++.. +++. ++|++|++||+.+..+. ....+.|+++ ++++|+|
T Consensus 3 vl~~qg--~~~e~~-~~l~~~g~~v~~v~~~----~~l~--~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~Pvl 73 (183)
T cd01749 3 VLALQG--DFREHI-RALERLGVEVIEVRTP----EDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVF 73 (183)
T ss_pred EEEecC--CcHHHH-HHHHHCCCeEEEECCH----HHhc--cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEE
Confidence 455554 333333 8899999999887652 3443 79999999997644432 1235667764 7899999
Q ss_pred EEechHHHHHHHhCC
Q 032797 102 GVCMGLQCIGEAFGD 116 (133)
Q Consensus 102 GIClG~QlLa~a~GG 116 (133)
|||+|+|+|+.++|+
T Consensus 74 GiC~G~qlL~~~~~~ 88 (183)
T cd01749 74 GTCAGLILLAKEVED 88 (183)
T ss_pred EECHHHHHHHHHhcc
Confidence 999999999999998
No 72
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.41 E-value=1.3e-12 Score=100.28 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=69.5
Q ss_pred EEEEECCCC-chHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC--C------chH-HHHHHHHh-C
Q 032797 27 IIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--D------SGI-SLQTVLEL-G 95 (133)
Q Consensus 27 i~vid~~~~-~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~--d------~~~-~~~~i~~~-~ 95 (133)
|+|+-+..+ ....+.++|++.|+++++++..+....+....+||+|||+||+.... . ... ..++++++ +
T Consensus 1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~ 80 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAE 80 (238)
T ss_pred CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHh
Confidence 355654444 45678899999999999887643211111113799999999964211 1 111 45677775 7
Q ss_pred CCCCEEEEechHHHHHHH--hCCeeeeccCCcce
Q 032797 96 PTVPLFGVCMGLQCIGEA--FGDCAFSAWCHAWK 127 (133)
Q Consensus 96 ~~~PvLGIClG~QlLa~a--~GG~v~~~~~~~~g 127 (133)
+++|+||||.|+|+|+++ ++|++.+.+..++.
T Consensus 81 ~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~ 114 (238)
T cd01740 81 RGGLVLGICNGFQILVELGLLPGALIRNKGLKFI 114 (238)
T ss_pred CCCeEEEECcHHHHHHHcCCCccccccCCCCcee
Confidence 899999999999999998 99998776654443
No 73
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.37 E-value=4.6e-12 Score=98.75 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=63.0
Q ss_pred CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCH--HHHccCCCCEEEECCCCC--CcCCch-----H----HH
Q 032797 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV--EELKRKNPRGVLISPGPG--APQDSG-----I----SL 88 (133)
Q Consensus 23 ~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~--~~l~~~~~DgvIl~GG~~--~~~d~~-----~----~~ 88 (133)
+.+||+|+.+.+++ .....++|+++|+++++++..+... .++ .+||+|||+||.. +....+ . ..
T Consensus 2 ~~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l--~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~ 79 (261)
T PRK01175 2 ESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSV--SDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLR 79 (261)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccch--hhCCEEEECCCCCcccccccchhhHHHHHHHHH
Confidence 45799999886554 5677899999999999887532111 122 3799999999953 221211 1 22
Q ss_pred HHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 89 QTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 89 ~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+.|+++ ++++|+||||+|+|+|+++
T Consensus 80 ~~Ik~f~~~gkpVLGICnG~QlLa~~ 105 (261)
T PRK01175 80 KDIEEFIDEGYPIIGICNGFQVLVEL 105 (261)
T ss_pred HHHHHHHHCCCeEEEECHHHHHHHHC
Confidence 556664 7899999999999999983
No 74
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.33 E-value=1e-11 Score=97.37 Aligned_cols=81 Identities=15% Similarity=0.234 Sum_probs=55.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCc--h-HHHHHHHHh----CC--CCCEEEEech
Q 032797 38 YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS--G-ISLQTVLEL----GP--TVPLFGVCMG 106 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~--~-~~~~~i~~~----~~--~~PvLGIClG 106 (133)
.+++++++++|+.+..++.+. +.++++. ..+||||++||+.+.... . ....+++.+ ++ .+|+||||+|
T Consensus 23 ~~Yv~~l~~aG~~vvpi~~~~-~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG 101 (273)
T cd01747 23 ASYVKFLESAGARVVPIWINE-SEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLG 101 (273)
T ss_pred HHHHHHHHHCCCeEEEEEeCC-cHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHH
Confidence 357889999999977776652 2333322 379999999998765321 1 122333332 22 3899999999
Q ss_pred HHHHHHHhCCeee
Q 032797 107 LQCIGEAFGDCAF 119 (133)
Q Consensus 107 ~QlLa~a~GG~v~ 119 (133)
+|+|+.++||++.
T Consensus 102 ~QlL~~~~gg~~~ 114 (273)
T cd01747 102 FELLTYLTSGETL 114 (273)
T ss_pred HHHHHHHhCCCcc
Confidence 9999999999754
No 75
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.33 E-value=2.7e-11 Score=96.12 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=67.2
Q ss_pred CCeEEEEECCCCch---HHHHHHHHhCCCe--EEEEeCCC---------------CCHHHHccCCCCEEEECCCCCC--c
Q 032797 24 KNPIIVIDNYDSFT---YNLCQYMGELGYH--FEVYRNDE---------------LTVEELKRKNPRGVLISPGPGA--P 81 (133)
Q Consensus 24 ~~~i~vid~~~~~~---~~i~~~l~~~G~~--~~v~~~~~---------------~~~~~l~~~~~DgvIl~GG~~~--~ 81 (133)
+.+|+|++.-..-. ..+.+.|.....+ ++...... .+.+++...+|||+||||+|-+ +
T Consensus 35 pl~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~ 114 (302)
T PRK05368 35 PLKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLP 114 (302)
T ss_pred CccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCcc
Confidence 47899998643221 2356666543333 44433221 2345565568999999999987 5
Q ss_pred CCchH-H---HHHHHHh-CCCCCEEEEechHHHHHHHhCCeee-eccCCcceee
Q 032797 82 QDSGI-S---LQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF-SAWCHAWKKF 129 (133)
Q Consensus 82 ~d~~~-~---~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~-~~~~~~~g~~ 129 (133)
+++.. + .++++.. +..+|+||||+|||+++.++||... ..++.++|..
T Consensus 115 fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~ 168 (302)
T PRK05368 115 FEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVF 168 (302)
T ss_pred CCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEE
Confidence 54432 2 2233322 4679999999999999999999622 3345677754
No 76
>PLN02327 CTP synthase
Probab=99.31 E-value=3.2e-12 Score=107.89 Aligned_cols=102 Identities=18% Similarity=0.288 Sum_probs=69.0
Q ss_pred cccccCCCCCeEEEEECC----CCchHHHHHHHHh----CCCeEEEEeCCCCCH----------------HHHccCCCCE
Q 032797 16 DDKKSKNNKNPIIVIDNY----DSFTYNLCQYMGE----LGYHFEVYRNDELTV----------------EELKRKNPRG 71 (133)
Q Consensus 16 ~~~~~~~~~~~i~vid~~----~~~~~~i~~~l~~----~G~~~~v~~~~~~~~----------------~~l~~~~~Dg 71 (133)
++.+.+....+|+++.-| |+|. ++.++|+. .+.++++...+.... +.+ .++||
T Consensus 289 ~~~~~~~~~v~IalVGKY~~l~DAY~-Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L--~~~DG 365 (557)
T PLN02327 289 ESCDNLTEPVRIAMVGKYTGLSDSYL-SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLL--KGADG 365 (557)
T ss_pred HHHhCCCCceEEEEEecccCCcHhHH-HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhh--ccCCE
Confidence 333455566899999544 3332 46666665 455666554321111 112 37999
Q ss_pred EEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeeeec
Q 032797 72 VLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSA 121 (133)
Q Consensus 72 vIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~ 121 (133)
|+++||++++...+.. ..++.. ++++|+||||+|||+++.+|+..|...
T Consensus 366 IvvpGGfG~~~~~G~i-~ai~~are~~iP~LGIClGmQl~viefaRnvlG~ 415 (557)
T PLN02327 366 ILVPGGFGDRGVEGKI-LAAKYARENKVPYLGICLGMQIAVIEFARSVLGL 415 (557)
T ss_pred EEeCCCCCCcccccHH-HHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCC
Confidence 9999999887666553 455554 789999999999999999999987653
No 77
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.31 E-value=1.2e-11 Score=91.56 Aligned_cols=91 Identities=11% Similarity=0.220 Sum_probs=65.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCc--C--CchHHHHHHHHhCCCCCE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP--Q--DSGISLQTVLELGPTVPL 100 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~--~--d~~~~~~~i~~~~~~~Pv 100 (133)
+||.|+..++.+.. -.++|++.|+++.+++. .+++. ++|++||+||++.. . +...+.+.|+++.+++|+
T Consensus 3 ~~igVLalqG~~~E-h~~al~~lG~~v~~v~~----~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kpi 75 (179)
T PRK13526 3 QKVGVLAIQGGYQK-HADMFKSLGVEVKLVKF----NNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPV 75 (179)
T ss_pred cEEEEEECCccHHH-HHHHHHHcCCcEEEECC----HHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCcE
Confidence 78999988777654 66789999998777653 45554 79999999985533 1 112256777775347899
Q ss_pred EEEechHHHHHH---HhC---Ceeeecc
Q 032797 101 FGVCMGLQCIGE---AFG---DCAFSAW 122 (133)
Q Consensus 101 LGIClG~QlLa~---a~G---G~v~~~~ 122 (133)
+|||.|+|+|+. -|| ++|.+..
T Consensus 76 lGICaG~qlL~~~s~~Lg~idg~V~Rn~ 103 (179)
T PRK13526 76 FGTCAGSIILSKGEGYLNLLDLEVQRNA 103 (179)
T ss_pred EEEcHHHHHHHccCCCCCCccEEEEEcC
Confidence 999999999998 344 5665543
No 78
>PRK06186 hypothetical protein; Validated
Probab=99.30 E-value=4.8e-12 Score=96.86 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=60.8
Q ss_pred CeEEEEECC----CCchHHHHHHHHh----CCCeEEEEeCCCCCHH---HHccCCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797 25 NPIIVIDNY----DSFTYNLCQYMGE----LGYHFEVYRNDELTVE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (133)
Q Consensus 25 ~~i~vid~~----~~~~~~i~~~l~~----~G~~~~v~~~~~~~~~---~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~ 93 (133)
.+|+++.-| |+|. ++.++|+. .+.++++...+....+ .+ .++|||+++||.|....++.. .+++.
T Consensus 2 v~IalVGKY~~~~daY~-Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l--~~~dgilvpgGfg~rg~~Gki-~ai~~ 77 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQ-AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDL--AGFDGIWCVPGSPYRNDDGAL-TAIRF 77 (229)
T ss_pred cEEEEEECCcCCcHHHH-HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhH--hhCCeeEeCCCCCcccHhHHH-HHHHH
Confidence 578888544 4443 46666765 4566666544322221 23 379999999998865555554 56766
Q ss_pred h-CCCCCEEEEechHHHHHHHhCCee
Q 032797 94 L-GPTVPLFGVCMGLQCIGEAFGDCA 118 (133)
Q Consensus 94 ~-~~~~PvLGIClG~QlLa~a~GG~v 118 (133)
. ++++|+||||+|||++...++..+
T Consensus 78 Are~~iP~LGIClGmQ~avIe~arnv 103 (229)
T PRK06186 78 ARENGIPFLGTCGGFQHALLEYARNV 103 (229)
T ss_pred HHHcCCCeEeechhhHHHHHHHHhhh
Confidence 4 889999999999998777666655
No 79
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.29 E-value=1e-11 Score=96.11 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=61.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC----chHHHHHHHHh-CCCCC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTVP 99 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d----~~~~~~~i~~~-~~~~P 99 (133)
|+|.|+.+++++.. ..++|++.|+++.+++. .+++. ++|+|||+||...... ...+.+.|+++ ++++|
T Consensus 2 m~igVLa~qG~~~e-~~~aL~~lG~ev~~v~~----~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~P 74 (248)
T PLN02832 2 MAIGVLALQGSFNE-HIAALRRLGVEAVEVRK----PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKP 74 (248)
T ss_pred cEEEEEeCCCchHH-HHHHHHHCCCcEEEeCC----HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCC
Confidence 58999998877754 46899999998877754 35664 7999999997543211 11245566664 67999
Q ss_pred EEEEechHHHHHHHh
Q 032797 100 LFGVCMGLQCIGEAF 114 (133)
Q Consensus 100 vLGIClG~QlLa~a~ 114 (133)
+||||.|||+|++..
T Consensus 75 vLGiC~GmqlLa~~~ 89 (248)
T PLN02832 75 VWGTCAGLIFLAERA 89 (248)
T ss_pred EEEEChhHHHHHHHh
Confidence 999999999999865
No 80
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.25 E-value=4.7e-11 Score=90.74 Aligned_cols=95 Identities=18% Similarity=0.320 Sum_probs=67.7
Q ss_pred CCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC--CcCCchH------HHHHHHHh
Q 032797 24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI------SLQTVLEL 94 (133)
Q Consensus 24 ~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~--~~~d~~~------~~~~i~~~ 94 (133)
.||++||-+..++- .....+++.+|.+++.++..+... . .+||++|++||.. +....+. .++.++++
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~---~-~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~ 77 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLL---G-RDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREF 77 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeeccc---C-CCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHH
Confidence 57999998877664 457888999999999887642211 1 1699999999953 3333332 34556664
Q ss_pred -CCCCCEEEEechHHHHHH--HhCCeeeecc
Q 032797 95 -GPTVPLFGVCMGLQCIGE--AFGDCAFSAW 122 (133)
Q Consensus 95 -~~~~PvLGIClG~QlLa~--a~GG~v~~~~ 122 (133)
++++|+||||-|+|+|.+ .+-|.+.++.
T Consensus 78 a~~g~~vLGICNGfQiL~e~gLlPGal~~N~ 108 (231)
T COG0047 78 AEKGKPVLGICNGFQILSEAGLLPGALTRNE 108 (231)
T ss_pred HHCCCeEEEEcchhHHHHHcCcCCcceecCC
Confidence 799999999999999986 3445555543
No 81
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.20 E-value=6.7e-11 Score=88.20 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=61.3
Q ss_pred EEEEECC-CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-----hHHHHHHHHh-CCCCC
Q 032797 27 IIVIDNY-DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLEL-GPTVP 99 (133)
Q Consensus 27 i~vid~~-~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-----~~~~~~i~~~-~~~~P 99 (133)
|+++++. .++..++.+.++..|+++++++... ++ .++|+|||+||.....+. ..+.+.|+++ ++++|
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~----~~--~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~p 74 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPE----GL--GDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGP 74 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCC----CC--CCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCc
Confidence 4677764 4677789999999999999887642 22 378999998887322111 1245567664 78999
Q ss_pred EEEEechHHHHHHHhC
Q 032797 100 LFGVCMGLQCIGEAFG 115 (133)
Q Consensus 100 vLGIClG~QlLa~a~G 115 (133)
+||||.|+|+|++.+.
T Consensus 75 vlgiC~G~qlL~~~~~ 90 (194)
T cd01750 75 VLGICGGYQMLGKYIV 90 (194)
T ss_pred EEEECHHHHHhhhhcc
Confidence 9999999999999884
No 82
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.12 E-value=2.5e-10 Score=94.90 Aligned_cols=98 Identities=19% Similarity=0.376 Sum_probs=64.4
Q ss_pred ccCCCCCeEEEEECCC----CchHHHHHHHHhCC----CeEEEEeCCCCCHH-----HHccCCCCEEEECCCCCCcCCch
Q 032797 19 KSKNNKNPIIVIDNYD----SFTYNLCQYMGELG----YHFEVYRNDELTVE-----ELKRKNPRGVLISPGPGAPQDSG 85 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~----~~~~~i~~~l~~~G----~~~~v~~~~~~~~~-----~l~~~~~DgvIl~GG~~~~~d~~ 85 (133)
+++....+|+++.-|. +|. ++.++|+.+| .++.+.+.+....+ .+.. .+|||+++||.|.-..++
T Consensus 283 ~~~~~~v~IalVGKYv~l~DaY~-Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~dgIlVPGGFG~RG~eG 360 (533)
T COG0504 283 KNPKKEVTIALVGKYVELPDAYK-SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVDGILVPGGFGYRGVEG 360 (533)
T ss_pred cCCCCceEEEEEECCcCchhHHH-HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCCEEEeCCCCCcCchHH
Confidence 3344447899995443 443 5677787654 45555544322211 2221 399999999998665666
Q ss_pred HHHHHHHH-hCCCCCEEEEechHHHHHHHhCCeee
Q 032797 86 ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 86 ~~~~~i~~-~~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
.. ..++. .++++|+||||+|||+....|--.|.
T Consensus 361 kI-~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~ 394 (533)
T COG0504 361 KI-AAIRYARENNIPFLGICLGMQLAVIEFARNVL 394 (533)
T ss_pred HH-HHHHHHHhcCCCEEEEchhHHHHHHHHHHHhc
Confidence 54 45665 48899999999999999887655444
No 83
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.91 E-value=3.6e-09 Score=79.19 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=49.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-----CchHHHHHHHHh-CCCCCEEEEechHHHHHH
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL-GPTVPLFGVCMGLQCIGE 112 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-----d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~ 112 (133)
.-.+.|++.|+++.+++.. ..++++ ++|+|||+||..... +...+.+.|+++ ++++|++|||.|+|+|++
T Consensus 15 e~~~~l~~~G~~v~~~s~~--~~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~ 90 (198)
T cd03130 15 ENLELLEAAGAELVPFSPL--KDEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGE 90 (198)
T ss_pred HHHHHHHHCCCEEEEECCC--CCCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHH
Confidence 3456788999998887542 112343 499999999743211 111245667764 778999999999999998
Q ss_pred Hh
Q 032797 113 AF 114 (133)
Q Consensus 113 a~ 114 (133)
.+
T Consensus 91 ~~ 92 (198)
T cd03130 91 SL 92 (198)
T ss_pred Hh
Confidence 76
No 84
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=98.88 E-value=2.5e-08 Score=75.93 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=62.1
Q ss_pred CeEEEEEC----CCCch----HHHHHHHHhCCCeEEEEeCCC--------------------------------CCHHHH
Q 032797 25 NPIIVIDN----YDSFT----YNLCQYMGELGYHFEVYRNDE--------------------------------LTVEEL 64 (133)
Q Consensus 25 ~~i~vid~----~~~~~----~~i~~~l~~~G~~~~v~~~~~--------------------------------~~~~~l 64 (133)
+||+|+-. .+++. -...+.|++.|++++++.+.. .+++++
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v 81 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEA 81 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHC
Confidence 46777642 23332 235678999999998875321 112233
Q ss_pred ccCCCCEEEECCCCCCcC---C----------chHHHHHHHHh-CCCCCEEEEechHHHHHHHhC
Q 032797 65 KRKNPRGVLISPGPGAPQ---D----------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (133)
Q Consensus 65 ~~~~~DgvIl~GG~~~~~---d----------~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~G 115 (133)
...+||+|+|+||.+... | .....++++++ ++++|+.+||+|-|+|+.++|
T Consensus 82 ~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~ 146 (217)
T PRK11780 82 DAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG 146 (217)
T ss_pred ChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc
Confidence 335799999999966421 1 33467888885 889999999999999999873
No 85
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.88 E-value=2.2e-09 Score=83.72 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=58.0
Q ss_pred CCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC--CcCCchH-----------HHH
Q 032797 24 KNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI-----------SLQ 89 (133)
Q Consensus 24 ~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~--~~~d~~~-----------~~~ 89 (133)
++||+|+-+.++. ......+|+..|++++.+...+....+....+||+++|+||.. +....+. +.+
T Consensus 1 kpkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~ 80 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMD 80 (259)
T ss_dssp --EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHH
Confidence 3689999876665 5678899999999999887542100111124899999999964 2222221 245
Q ss_pred HHHHh-CC-CCCEEEEechHHHHHHH--hCC
Q 032797 90 TVLEL-GP-TVPLFGVCMGLQCIGEA--FGD 116 (133)
Q Consensus 90 ~i~~~-~~-~~PvLGIClG~QlLa~a--~GG 116 (133)
.|+++ ++ ++|+||||-|+|+|.+. +.+
T Consensus 81 ~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~ 111 (259)
T PF13507_consen 81 AIREFLERPGGFVLGICNGFQILVELGLLPG 111 (259)
T ss_dssp HHHHHHHCTT-EEEEECHHHHHHCCCCCSTT
T ss_pred HHHHHHhcCCCeEEEEchHhHHHHHhCcCCC
Confidence 56664 55 99999999999999875 666
No 86
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.77 E-value=3.5e-08 Score=81.52 Aligned_cols=52 Identities=23% Similarity=0.462 Sum_probs=40.6
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEechHHHHHHHhCCeee
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
..|||+++||.|+..-.+...+.-++.++++|+||||+|||+....|--++.
T Consensus 363 ~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvL 414 (585)
T KOG2387|consen 363 SADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGMQLAVIEFARNVL 414 (585)
T ss_pred cCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhh
Confidence 6899999999987766666543333348899999999999999887765544
No 87
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.73 E-value=4.4e-08 Score=82.21 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=51.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHccCCCCEEEECCCCCC-cCCc-hHHHHHHHHhCCCCCEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGA-PQDS-GISLQTVLELGPTVPLF 101 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~-~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~-~~d~-~~~~~~i~~~~~~~PvL 101 (133)
|+|-|+.-. +..++++..|. +++++..+ +.+++. ++|+|||+||... ..+. ..+.+.|+++ ++|+|
T Consensus 1 m~iGvlal~-----sv~~al~~lg~~~~~vv~~~--~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvl 69 (476)
T PRK06278 1 MEIGLLDIK-----GSLPCFENFGNLPTKIIDEN--NIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYII 69 (476)
T ss_pred CEEEEEehh-----hHHHHHHHhcCCCcEEEEeC--ChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEE
Confidence 467777653 44566777765 56665543 346665 7999999997421 1111 1233444444 79999
Q ss_pred EEechHHHHHHHh
Q 032797 102 GVCMGLQCIGEAF 114 (133)
Q Consensus 102 GIClG~QlLa~a~ 114 (133)
|||.|+|||++..
T Consensus 70 GICgG~QmLg~~~ 82 (476)
T PRK06278 70 GICSGFQILSEKI 82 (476)
T ss_pred EEcHHHHhccccc
Confidence 9999999999875
No 88
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.72 E-value=1.1e-07 Score=61.16 Aligned_cols=73 Identities=26% Similarity=0.481 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHH-HHccCCCCEEEECCCCCCcCCc---hHHHHHHHHh-CCCCCEEEEechHHHH
Q 032797 38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLEL-GPTVPLFGVCMGLQCI 110 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~~~~-~l~~~~~DgvIl~GG~~~~~d~---~~~~~~i~~~-~~~~PvLGIClG~QlL 110 (133)
..+.+.++..++++++++....... .....++|+++++||...+... ....+.+++. .+++|++|+|.|+|++
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 4577889999999998876532111 0112479999999998765543 4456777764 7789999999999999
No 89
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=98.71 E-value=1.2e-07 Score=72.05 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=54.9
Q ss_pred HHHHHHhCCCeEEEEeCCC--------------------------------CCHHHHccCCCCEEEECCCCCCc---CC-
Q 032797 40 LCQYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAP---QD- 83 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~--------------------------------~~~~~l~~~~~DgvIl~GG~~~~---~d- 83 (133)
..+.|++.|+++++..+.. .+.+++...+||+|+|+||.+.. .|
T Consensus 22 p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~ 101 (213)
T cd03133 22 TLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDF 101 (213)
T ss_pred HHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhh
Confidence 5678899999998875421 11233333479999999996532 12
Q ss_pred ---------chHHHHHHHHh-CCCCCEEEEechHHHHHHHhC
Q 032797 84 ---------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (133)
Q Consensus 84 ---------~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~G 115 (133)
...+.++++++ ++++|+.+||.|.++|+.+.+
T Consensus 102 ~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 102 AVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred cccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 33467788875 889999999999999999884
No 90
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.66 E-value=1.7e-08 Score=74.49 Aligned_cols=67 Identities=7% Similarity=-0.010 Sum_probs=47.5
Q ss_pred HHccCCCCEEEECCCCCCcCCch---H---HHHHHHHh-CCCCCEEEEechHHHHHHHhCCee-eeccCCcceee
Q 032797 63 ELKRKNPRGVLISPGPGAPQDSG---I---SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCA-FSAWCHAWKKF 129 (133)
Q Consensus 63 ~l~~~~~DgvIl~GG~~~~~d~~---~---~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v-~~~~~~~~g~~ 129 (133)
++....|||+||||.|-.-.+.. . +.+++.-. ++..|+|+||+|+|+...++||.. .+.++..+|..
T Consensus 57 ~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~Gvf 131 (175)
T cd03131 57 DIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFGVF 131 (175)
T ss_pred HccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEEEE
Confidence 34456899999999987433222 1 22233222 577999999999999999999975 66777777654
No 91
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.65 E-value=1.6e-07 Score=68.70 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=36.7
Q ss_pred CCCEEEECCCCCCcC--CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 68 NPRGVLISPGPGAPQ--DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~--d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+||+++++||++... ......++++++ ++++|+.+||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 689999999975221 234467788874 7899999999999999986
No 92
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=98.65 E-value=1.7e-07 Score=75.70 Aligned_cols=92 Identities=14% Similarity=0.251 Sum_probs=66.8
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCCC
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTV 98 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~-~~~~~ 98 (133)
-|.++|++.+..+++..+|+.+|+++..+.. +.++. +.|.+|+ +|.|+..... -+.+.+++ .+.++
T Consensus 3 vv~~ld~~agn~~si~nal~hlg~~i~~v~~----P~DI~--~a~rLIf-PGVGnfg~~~D~L~~~Gf~eplr~Yiesgk 75 (541)
T KOG0623|consen 3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQT----PGDIL--NADRLIF-PGVGNFGPAMDVLNRTGFAEPLRKYIESGK 75 (541)
T ss_pred eEEEEecCCccHHHHHHHHHhcCceeeeccC----chhhc--cCceEee-cCcccchHHHHHHhhhhhHHHHHHHHhcCC
Confidence 4678999999999999999999999887654 34564 7899999 4555433111 13456666 48999
Q ss_pred CEEEEechHHHHHHHhCCeeeeccCCcce
Q 032797 99 PLFGVCMGLQCIGEAFGDCAFSAWCHAWK 127 (133)
Q Consensus 99 PvLGIClG~QlLa~a~GG~v~~~~~~~~g 127 (133)
|++|||.|.|+|. -|+++..+..+.|
T Consensus 76 PfmgicvGlQaLF---~gSvE~p~skGLg 101 (541)
T KOG0623|consen 76 PFMGICVGLQALF---DGSVENPPSKGLG 101 (541)
T ss_pred CeEeehhhHHHHh---cccccCCCcCccc
Confidence 9999999999985 5666655444443
No 93
>PRK00784 cobyric acid synthase; Provisional
Probab=98.64 E-value=7.9e-08 Score=80.78 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=58.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-----HHHHHHHHh-CC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLEL-GP 96 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-----~~~~~i~~~-~~ 96 (133)
..+|+|+.+...|...=.+.|++ .|++++.++.. ++++ ++|+|+|+||.....+.. .+.+.|+++ ++
T Consensus 251 ~~~i~v~~~~~a~~f~nl~~l~~~~g~~v~~~s~~----~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~ 324 (488)
T PRK00784 251 ALRIAVIRLPRISNFTDFDPLRAEPGVDVRYVRPG----EPLP--DADLVILPGSKNTIADLAWLRESGWDEAIRAHARR 324 (488)
T ss_pred ceEEEEEeCCCcCCccChHHHhhcCCCeEEEECCc----cccc--cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHc
Confidence 36899997433332222345665 89998877642 2454 799999999864322211 134566664 78
Q ss_pred CCCEEEEechHHHHHHHh
Q 032797 97 TVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 97 ~~PvLGIClG~QlLa~a~ 114 (133)
++|+||||.|+|+|++.+
T Consensus 325 g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 325 GGPVLGICGGYQMLGRRI 342 (488)
T ss_pred CCeEEEECHHHHHHhhhc
Confidence 999999999999999987
No 94
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.56 E-value=3.6e-07 Score=56.30 Aligned_cols=73 Identities=26% Similarity=0.477 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHH-HHccCCCCEEEECCCCCCcCCc---hHHHHHHHH-hCCCCCEEEEechHHHH
Q 032797 38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 110 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~~~~-~l~~~~~DgvIl~GG~~~~~d~---~~~~~~i~~-~~~~~PvLGIClG~QlL 110 (133)
..+.+.+++.++.+.+++....... .....++|++|++||+..+... ....+++.+ ..+++|++|+|.|+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 4677888889999988876432211 1123489999999998866543 445566655 46789999999999874
No 95
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=98.56 E-value=3.2e-07 Score=65.95 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=52.3
Q ss_pred HHHHHHHhCCCeEEEEeCCC--------------CCHHHHccCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEE
Q 032797 39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF 101 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvL 101 (133)
.+.+.|++.|+++.++.... .+.++....+||+++++||++.- .......++++++ ++++|+.
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~ 96 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVA 96 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEE
Confidence 35677888898887764321 11222222369999999996521 1234567888885 7899999
Q ss_pred EEechHHHHHHH
Q 032797 102 GVCMGLQCIGEA 113 (133)
Q Consensus 102 GIClG~QlLa~a 113 (133)
+||.|.++|+.+
T Consensus 97 ~ic~G~~~La~a 108 (166)
T TIGR01382 97 AICHGPQLLISA 108 (166)
T ss_pred EEChHHHHHHhc
Confidence 999999999985
No 96
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.54 E-value=5.4e-07 Score=82.98 Aligned_cols=90 Identities=22% Similarity=0.236 Sum_probs=63.7
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCC--HHHHccCCCCEEEECCCCC--CcCCchH----------
Q 032797 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPG--APQDSGI---------- 86 (133)
Q Consensus 22 ~~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~--~~~l~~~~~DgvIl~GG~~--~~~d~~~---------- 86 (133)
...+||+|+-+.+++ .....++|+.+|++++.+...+.. ...+ .+|++++++||.. +..+.+.
T Consensus 1035 ~~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L--~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~ 1112 (1307)
T PLN03206 1035 TSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISL--DDFRGIVFVGGFSYADVLDSAKGWAGSIRFNE 1112 (1307)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccc--cceeEEEEcCcCCCccccchHHHHHHHHHhCh
Confidence 456899999876665 456888999999998777653211 1123 3799999999963 4444331
Q ss_pred -HHHHHHHh--CCCCCEEEEechHHHHHHH
Q 032797 87 -SLQTVLEL--GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 87 -~~~~i~~~--~~~~PvLGIClG~QlLa~a 113 (133)
..+.++++ ..+.++||||.|+|+|...
T Consensus 1113 ~~~~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1113 PLLQQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHHHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence 23445553 4699999999999999884
No 97
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.52 E-value=7.6e-07 Score=81.61 Aligned_cols=92 Identities=13% Similarity=0.200 Sum_probs=63.3
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCC-------CHHHHc--cCCCCEEEECCCCC--CcCCch----
Q 032797 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDEL-------TVEELK--RKNPRGVLISPGPG--APQDSG---- 85 (133)
Q Consensus 22 ~~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~-------~~~~l~--~~~~DgvIl~GG~~--~~~d~~---- 85 (133)
...+||+|+-+.+++ .....++|+++|++++.+...+. +.+.+. -.++++++++||.. +..+..
T Consensus 975 ~~kpkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~ 1054 (1239)
T TIGR01857 975 VEKPRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFI 1054 (1239)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHH
Confidence 356899999887666 45688899999999877764322 112221 14799999999964 322221
Q ss_pred -------HHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 86 -------ISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 86 -------~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
...+.+.++ +++.++||||.|+|+|...
T Consensus 1055 aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1055 AAILRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred HHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence 123445453 7899999999999999884
No 98
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.52 E-value=5.6e-07 Score=74.98 Aligned_cols=86 Identities=16% Similarity=0.262 Sum_probs=58.5
Q ss_pred CCeEEEEECCCCchHH---HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-----CchHHHHHHHHh-
Q 032797 24 KNPIIVIDNYDSFTYN---LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL- 94 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~---i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-----d~~~~~~~i~~~- 94 (133)
+.+|+|+-.. .|... =.+.|++.|+++..++.. ..++++ ++|+|+|+||....+ ....+.+.|+++
T Consensus 245 ~~~iava~d~-af~f~y~e~~~~L~~~g~~~~~~~~~--~~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~ 319 (451)
T PRK01077 245 GVRIAVARDA-AFNFYYPENLELLRAAGAELVFFSPL--ADEALP--DCDGLYLGGGYPELFAAELAANTSMRASIRAAA 319 (451)
T ss_pred CceEEEEecC-cccccHHHHHHHHHHCCCEEEEeCCc--CCCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHH
Confidence 3688888422 33222 346688899988877542 122343 799999999963221 112246777775
Q ss_pred CCCCCEEEEechHHHHHHHh
Q 032797 95 GPTVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 95 ~~~~PvLGIClG~QlLa~a~ 114 (133)
++++|++|||-|+|+|++.+
T Consensus 320 ~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 320 AAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HcCCCEEEEcHHHHHHHhhh
Confidence 78899999999999999987
No 99
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.49 E-value=7.1e-07 Score=82.42 Aligned_cols=92 Identities=13% Similarity=0.185 Sum_probs=62.8
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC--CcCCchH-----------H
Q 032797 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI-----------S 87 (133)
Q Consensus 22 ~~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~--~~~d~~~-----------~ 87 (133)
.+.+||+|+-+.+.+ ......+|+.+|+++..+...+.......-.+|++++++||.. +....+. .
T Consensus 1053 ~~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~ 1132 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRL 1132 (1310)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHH
Confidence 456899999876665 4568889999999888776533221121113799999999953 3322222 2
Q ss_pred HHHHHH-h-CCCCCEEEEechHHHHHHH
Q 032797 88 LQTVLE-L-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 88 ~~~i~~-~-~~~~PvLGIClG~QlLa~a 113 (133)
.+.+++ + ..+.++||||.|+|+|...
T Consensus 1133 ~~~~~~f~~~~d~~~LGiCNGfQ~L~~~ 1160 (1310)
T TIGR01735 1133 RDQFQAFFKRPDTFSLGVCNGCQMLSNL 1160 (1310)
T ss_pred HHHHHHHHhCCCceEEEecHHHHHHHHH
Confidence 344545 3 6899999999999999943
No 100
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.47 E-value=1e-06 Score=81.39 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=62.9
Q ss_pred CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCH--HHHccCCCCEEEECCCCC--CcCCchH-----------
Q 032797 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV--EELKRKNPRGVLISPGPG--APQDSGI----------- 86 (133)
Q Consensus 23 ~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~--~~l~~~~~DgvIl~GG~~--~~~d~~~----------- 86 (133)
..+||+|+-+.+++ ......+|+.+|++++.+...+... ..+ .++++++++||.. +....+.
T Consensus 1034 ~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l--~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~ 1111 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTL--EDFKGLVACGGFSYGDVLGAGEGWAKSILFNPR 1111 (1290)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCCh--hhCcEEEECCccCCcccchHHHHHHHHhhccHH
Confidence 56899999876665 4568889999999987776432221 123 3799999999953 3222221
Q ss_pred HHHHHHH-h-CCCCCEEEEechHHHHHHH
Q 032797 87 SLQTVLE-L-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 87 ~~~~i~~-~-~~~~PvLGIClG~QlLa~a 113 (133)
..+.+++ + ..+.++||||.|+|+|...
T Consensus 1112 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1112 LRDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence 2344555 3 6799999999999999985
No 101
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=98.45 E-value=1.1e-06 Score=63.12 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=52.2
Q ss_pred HHHHHHhCCCeEEEEeCC-CC---------------CHHHHccCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCE
Q 032797 40 LCQYMGELGYHFEVYRND-EL---------------TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPL 100 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~-~~---------------~~~~l~~~~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~Pv 100 (133)
+.+.|+..|++++++..+ .. +.++....+||+++++||++.. .+.....++|+++ .+++|+
T Consensus 18 ~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i 97 (165)
T cd03134 18 PLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPV 97 (165)
T ss_pred HHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeE
Confidence 566788889988887544 11 1122222368999999997422 1334567888875 789999
Q ss_pred EEEechHHHHHHH
Q 032797 101 FGVCMGLQCIGEA 113 (133)
Q Consensus 101 LGIClG~QlLa~a 113 (133)
.+||.|.++|+.+
T Consensus 98 ~~ic~G~~~La~a 110 (165)
T cd03134 98 AAICHGPWVLISA 110 (165)
T ss_pred EEEchHHHHHHhc
Confidence 9999999999874
No 102
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=98.41 E-value=1.6e-06 Score=66.48 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=38.2
Q ss_pred CCCCEEEECCCCCCcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 67 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.+||+|+|+||.+... +...+.++++++ ++++|+.+||+|-++|+.+
T Consensus 93 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 4799999999976433 334567888885 7899999999999999886
No 103
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=98.41 E-value=3e-06 Score=59.52 Aligned_cols=89 Identities=18% Similarity=0.076 Sum_probs=60.1
Q ss_pred CeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc---CCc
Q 032797 25 NPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP---QDS 84 (133)
Q Consensus 25 ~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~---~d~ 84 (133)
+||+++-+.+... ..+.+.|+..|+++.++..+.. +.++....+||.++++||.+.. .+.
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~ 81 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPS 81 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccC
Confidence 4677664432222 2366788889999988754311 1112222258999999987643 234
Q ss_pred hHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 85 ~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
....+++++. .+++|+.+||.|..+|+.+
T Consensus 82 ~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 82 GRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred hHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 5577888884 7899999999999999985
No 104
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=98.37 E-value=2.3e-06 Score=62.83 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=59.4
Q ss_pred CCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCC-----------------CCHHHHccCCCCEEEECCCCCCcC-
Q 032797 24 KNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAPQ- 82 (133)
Q Consensus 24 ~~~i~vid~~~~~---~~~i~~~l~~~G~~~~v~~~~~-----------------~~~~~l~~~~~DgvIl~GG~~~~~- 82 (133)
.++++++-+.+-. .....+.|++.|.++++..... ...++....+||+++++||...+.
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~ 81 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY 81 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence 3566666432221 2245678999999877654321 011112224899999999944433
Q ss_pred Cc--hHHHHHHHHh-CCCCCEEEEechHHHHHHHh
Q 032797 83 DS--GISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 83 d~--~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~ 114 (133)
.. ....++++++ +.++||.+||.|-|+|+.+-
T Consensus 82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 82 LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 22 4577888886 78999999999999998764
No 105
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=98.36 E-value=5.4e-06 Score=61.29 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=57.7
Q ss_pred CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-----------------CCHHHHccCCCCEEEECCCCCCcC
Q 032797 24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAPQ 82 (133)
Q Consensus 24 ~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~-----------------~~~~~l~~~~~DgvIl~GG~~~~~ 82 (133)
.+||+|+-. ++|. ....+.|++.|+++.+..... .+.+++...++|.|+++||++.+.
T Consensus 2 ~~~~~il~~-~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~ 80 (196)
T PRK11574 2 SASALVCLA-PGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAE 80 (196)
T ss_pred CceEEEEeC-CCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhh
Confidence 467777743 2332 235677888888877654210 112233223699999999865332
Q ss_pred ---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 83 ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 83 ---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+...+.++++++ ++++++.+||.|..+|...
T Consensus 81 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~ 115 (196)
T PRK11574 81 CFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVP 115 (196)
T ss_pred hhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHh
Confidence 334567888885 7899999999999976543
No 106
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.32 E-value=1.9e-06 Score=71.89 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=57.2
Q ss_pred CCeEEEEECCCCchH---HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-----hHHHHHHHHh-
Q 032797 24 KNPIIVIDNYDSFTY---NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLEL- 94 (133)
Q Consensus 24 ~~~i~vid~~~~~~~---~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-----~~~~~~i~~~- 94 (133)
+.||+|+-.. .|.. .=.+.|++.|+++..+++. ..++++ ++|+|+|+||.....+. ..+.+.|+++
T Consensus 244 ~~~Iava~d~-afnFy~~~~~~~L~~~g~~~~~~~~~--~d~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~ 318 (449)
T TIGR00379 244 YVRIAVAQDQ-AFNFYYQDNLDALTHNAAELVPFSPL--EDTELP--DVDAVYIGGGFPELFAEELSQNQALRDSIKTFI 318 (449)
T ss_pred CcEEEEEech-hhceeHHHHHHHHHHCCCEEEEECCc--cCCCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3688888321 2222 2345688889988877542 112343 79999999986322211 1235667664
Q ss_pred CCCCCEEEEechHHHHHHHh
Q 032797 95 GPTVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 95 ~~~~PvLGIClG~QlLa~a~ 114 (133)
+++.|++|+|-|+|+|++.+
T Consensus 319 ~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 319 HQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HcCCCEEEEcHHHHHHHhhh
Confidence 78899999999999999987
No 107
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.32 E-value=1.4e-06 Score=65.79 Aligned_cols=88 Identities=13% Similarity=0.133 Sum_probs=60.4
Q ss_pred CCCCeEEEEECC----CCchHHHHHHHHhC-CCeEEEEeCCC-CC-HHHHccCCCCEEEECCCCCCcCCch------HHH
Q 032797 22 NNKNPIIVIDNY----DSFTYNLCQYMGEL-GYHFEVYRNDE-LT-VEELKRKNPRGVLISPGPGAPQDSG------ISL 88 (133)
Q Consensus 22 ~~~~~i~vid~~----~~~~~~i~~~l~~~-G~~~~v~~~~~-~~-~~~l~~~~~DgvIl~GG~~~~~d~~------~~~ 88 (133)
....+|++|-.- +.|..++.+++++. |++++.+.... .. .+.+. .+|+|+++|| +..... .+.
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~--~ad~I~l~GG--~~~~~~~~l~~~~l~ 104 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALL--EADVIYVGGG--NTFNLLAQWREHGLD 104 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHh--cCCEEEECCc--hHHHHHHHHHHcCHH
Confidence 456899999443 24455677888899 99888775321 11 23343 7999999886 433221 134
Q ss_pred HHHHH-hCCCCCEEEEechHHHHHHH
Q 032797 89 QTVLE-LGPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 89 ~~i~~-~~~~~PvLGIClG~QlLa~a 113 (133)
+.|++ +++++|++|+|.|+|++...
T Consensus 105 ~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 105 AILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 55665 47889999999999999985
No 108
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.23 E-value=1.4e-06 Score=73.19 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=50.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-----HHHHHHHHh-CCCC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLEL-GPTV 98 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-----~~~~~i~~~-~~~~ 98 (133)
.+|+|+.....+...=.+.|+..- .+...+. .++++ ++|+|+|+||.....+.. .+.+.|+++ +++.
T Consensus 248 ~~Iav~~~~~~~nf~~~~~L~~~~-~~~f~~~----~~~l~--~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~ 320 (475)
T TIGR00313 248 IRIGVVRLPRISNFTDFEPLRYEA-FVKFLDL----DDSLT--GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGG 320 (475)
T ss_pred cEEEEEcCCcccCccChHHHhhCC-CeEEeCC----ccccc--cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCC
Confidence 789888632222222234555441 2222222 23454 789999999863222211 134567664 7899
Q ss_pred CEEEEechHHHHHHHh
Q 032797 99 PLFGVCMGLQCIGEAF 114 (133)
Q Consensus 99 PvLGIClG~QlLa~a~ 114 (133)
|++|||-|+|+|++.+
T Consensus 321 pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 321 IVIGICGGYQMLGKEL 336 (475)
T ss_pred cEEEEcHHHHHhhhhh
Confidence 9999999999999965
No 109
>PRK04155 chaperone protein HchA; Provisional
Probab=98.23 E-value=5.3e-06 Score=65.64 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=37.5
Q ss_pred cCCCCEEEECCCCCCcCC---chHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 66 RKNPRGVLISPGPGAPQD---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 66 ~~~~DgvIl~GG~~~~~d---~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
..+||+|+|+||.+...+ ...+.++++.+ ++++||.+||+|-++|..+
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 358999999999775443 33466788875 8899999999999977663
No 110
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=98.22 E-value=8.5e-06 Score=62.56 Aligned_cols=47 Identities=19% Similarity=0.117 Sum_probs=37.3
Q ss_pred CCCCEEEECCCCCCcCC---chHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 67 KNPRGVLISPGPGAPQD---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~d---~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.+||+|+++||.+...+ ...+.++++++ ++++||-.||+|-++|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 47999999999765443 34466788875 8899999999999987664
No 111
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.21 E-value=8.1e-06 Score=59.20 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=51.0
Q ss_pred HHHHHHHhC-CCeEEEEeCCC--------------CCHHHHccCCCCEEEECCCCCC-cCCchHHHHHHHHh-CCCCCEE
Q 032797 39 NLCQYMGEL-GYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGA-PQDSGISLQTVLEL-GPTVPLF 101 (133)
Q Consensus 39 ~i~~~l~~~-G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~GG~~~-~~d~~~~~~~i~~~-~~~~PvL 101 (133)
...+.|++. ++++.++..+. .+.++....++|.++|+||+.. ........++|+++ ++++++.
T Consensus 16 ~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~ 95 (170)
T cd03140 16 YLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVA 95 (170)
T ss_pred HHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEE
Confidence 345666665 67777664331 1233332236999999999652 22334567888885 7889999
Q ss_pred EEechHHHHHHH
Q 032797 102 GVCMGLQCIGEA 113 (133)
Q Consensus 102 GIClG~QlLa~a 113 (133)
+||-|.++|+.+
T Consensus 96 aic~G~~~La~a 107 (170)
T cd03140 96 AICGATLALARA 107 (170)
T ss_pred EEChHHHHHHHC
Confidence 999999999985
No 112
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=98.21 E-value=9.2e-06 Score=57.79 Aligned_cols=75 Identities=11% Similarity=0.196 Sum_probs=53.2
Q ss_pred HHHHHHHhCCCeEEEEeCCC---------------CCHHHHccCCCCEEEECCCCCCc---CCchHHHHHHHHh-CCCCC
Q 032797 39 NLCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPTVP 99 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~---------------~~~~~l~~~~~DgvIl~GG~~~~---~d~~~~~~~i~~~-~~~~P 99 (133)
.+.+.|+..|+++.++..+. .+.++....+||.++++||++.+ .+.....++++++ +++++
T Consensus 16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~ 95 (163)
T cd03135 16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKL 95 (163)
T ss_pred HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCE
Confidence 45677888888887764321 11222222479999999997322 2345577888875 78999
Q ss_pred EEEEechHHHHHHH
Q 032797 100 LFGVCMGLQCIGEA 113 (133)
Q Consensus 100 vLGIClG~QlLa~a 113 (133)
+.+||.|..+|+.+
T Consensus 96 i~~ic~g~~~La~a 109 (163)
T cd03135 96 IAAICAAPAVLAKA 109 (163)
T ss_pred EEEEchhHHHHHHc
Confidence 99999999999997
No 113
>PHA03366 FGAM-synthase; Provisional
Probab=98.20 E-value=1.2e-05 Score=74.47 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC--CcCCchH-----------
Q 032797 21 KNNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI----------- 86 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~--~~~d~~~----------- 86 (133)
+...+||+|+-+.+.+ .....++|..+|+++..+...+...... -.+|++++++||.. +..+.+.
T Consensus 1025 ~~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~-l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~ 1103 (1304)
T PHA03366 1025 PDKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTF-LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPA 1103 (1304)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCc-cccceEEEEcCCCCCcccccHHHHHHHHhhhchH
Confidence 4567899999776665 4568889999999988776533222221 13799999999965 2222221
Q ss_pred HHHHHHHh--CCCCCEEEEec-hHHHHHH
Q 032797 87 SLQTVLEL--GPTVPLFGVCM-GLQCIGE 112 (133)
Q Consensus 87 ~~~~i~~~--~~~~PvLGICl-G~QlLa~ 112 (133)
..+.++++ ..+.++||||- |+|+|+.
T Consensus 1104 ~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~ 1132 (1304)
T PHA03366 1104 VRDALLRFLNRPDTFSLGCGELGCQILFA 1132 (1304)
T ss_pred HHHHHHHHHhCCCCeEEEeCcHHHHHHHH
Confidence 23555553 46999999998 9999987
No 114
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.18 E-value=1.3e-06 Score=63.09 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=36.8
Q ss_pred CCCEEEECCCCCCcCCch-----HHHHHHHHh-CCCCCEEEEechHHHHHHHhC
Q 032797 68 NPRGVLISPGPGAPQDSG-----ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~-----~~~~~i~~~-~~~~PvLGIClG~QlLa~a~G 115 (133)
++|+|+|+||.-..++.. .+.+.|+++ ++++||+|||-|+|+|.+.+=
T Consensus 7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 799999998854333222 245677774 789999999999999999774
No 115
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.14 E-value=1.6e-05 Score=73.22 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=61.7
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCH-HHHccCCCCEEEECCCCC--CcCCchH-----------
Q 032797 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV-EELKRKNPRGVLISPGPG--APQDSGI----------- 86 (133)
Q Consensus 22 ~~~~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~-~~l~~~~~DgvIl~GG~~--~~~d~~~----------- 86 (133)
...+||+|+-+.+.. .....++|+.+|+++..+...+... ..+ .+|+|++++||.+ ++...+.
T Consensus 927 ~~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l--~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~ 1004 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFL--DTFSGLIIGGASGTLDSEVGARALAAALLRNQA 1004 (1202)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCch--hheEEEEEcCcCCCCccchHHHHHHHHhhcchH
Confidence 345789999776655 4568889999999988776543221 223 3799999988864 3322221
Q ss_pred HHHHHHHh--CCCCCEEEEec-hHHHHHH
Q 032797 87 SLQTVLEL--GPTVPLFGVCM-GLQCIGE 112 (133)
Q Consensus 87 ~~~~i~~~--~~~~PvLGICl-G~QlLa~ 112 (133)
..+.++++ ..+.++||||- |+|+|+.
T Consensus 1005 ~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~ 1033 (1202)
T TIGR01739 1005 FLRDLLTFLNRPDTFSLGFGELGCQLLLA 1033 (1202)
T ss_pred HHHHHHHHHhCCCceEEEeCcHHHHHHHH
Confidence 23445553 56999999998 9999987
No 116
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=98.10 E-value=1.3e-05 Score=60.83 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=38.5
Q ss_pred CCCCEEEECCCCCCcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHHh
Q 032797 67 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~ 114 (133)
.+||+|+|+||++... +.....++++++ ++++++.+||.|.++|+.+-
T Consensus 89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag 140 (221)
T cd03141 89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVK 140 (221)
T ss_pred hHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhcc
Confidence 3799999999976432 344577888885 78999999999999999863
No 117
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.07 E-value=1.3e-05 Score=66.81 Aligned_cols=85 Identities=18% Similarity=0.259 Sum_probs=53.6
Q ss_pred CeEEEE-ECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCC
Q 032797 25 NPIIVI-DNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPT 97 (133)
Q Consensus 25 ~~i~vi-d~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~ 97 (133)
.||+|- |---+| ...=.+.|++. +++..+.+- ..++++ ++|+|+|+||.....+.. ...+.|+++ +++
T Consensus 234 ~~iavA~D~AF~FyY~enl~~L~~~-aelv~fSPl--~~~~lp--~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~G 308 (433)
T PRK13896 234 PTVAVARDAAFCFRYPATIERLRER-ADVVTFSPV--AGDPLP--DCDGVYLPGGYPELHADALADSPALDELADRAADG 308 (433)
T ss_pred CeEEEEEcCccceeCHHHHHHHHhc-CcEEEEcCC--CCCCCC--CCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHCC
Confidence 688887 321122 12233567777 766655441 223444 789999999874322210 123556664 789
Q ss_pred CCEEEEechHHHHHHHh
Q 032797 98 VPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 98 ~PvLGIClG~QlLa~a~ 114 (133)
+|++|||-|+|+|++.+
T Consensus 309 ~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 309 LPVLGECGGLMALAESL 325 (433)
T ss_pred CcEEEEehHHHHhhccc
Confidence 99999999999999987
No 118
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.99 E-value=2.6e-05 Score=58.00 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=55.4
Q ss_pred CeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC----CchHHHHHHHH-hCCCC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTV 98 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G-~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~----d~~~~~~~i~~-~~~~~ 98 (133)
|+|-|+-..+.+. .=.+.+++++ .++..++. ++++. ..||+||+||..+.- ....+.+.+++ ..+++
T Consensus 1 m~IGVLalQG~v~-EH~~~l~~~~~~e~~~Vk~----~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~ 73 (194)
T COG0311 1 MKIGVLALQGAVE-EHLEALEKAGGAEVVEVKR----PEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGL 73 (194)
T ss_pred CeEEEEEecccHH-HHHHHHHhhcCCceEEEcC----HHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCC
Confidence 5677776544443 3345677774 77665543 56775 799999999964321 11113455665 47899
Q ss_pred CEEEEechHHHHHHHh
Q 032797 99 PLFGVCMGLQCIGEAF 114 (133)
Q Consensus 99 PvLGIClG~QlLa~a~ 114 (133)
|++|-|-|+-+||...
T Consensus 74 Pv~GTCAGlIlLakei 89 (194)
T COG0311 74 PVFGTCAGLILLAKEI 89 (194)
T ss_pred ceEEechhhhhhhhhh
Confidence 9999999999999643
No 119
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=97.95 E-value=3.8e-05 Score=55.60 Aligned_cols=74 Identities=11% Similarity=0.177 Sum_probs=50.2
Q ss_pred HHHHHHhCCCeEEE--EeCCC---------------CCHHHHccCCCCEEEECCCCCCc---CCchHHHHHHHHh-CCCC
Q 032797 40 LCQYMGELGYHFEV--YRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPTV 98 (133)
Q Consensus 40 i~~~l~~~G~~~~v--~~~~~---------------~~~~~l~~~~~DgvIl~GG~~~~---~d~~~~~~~i~~~-~~~~ 98 (133)
+.+.|+..|.++++ +..+. .+.++....+||.++|+||...+ .+...+.++++++ .+++
T Consensus 18 ~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~ 97 (179)
T TIGR01383 18 TVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGK 97 (179)
T ss_pred HHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCC
Confidence 56678878876664 43220 11222222479999999986422 2344567888885 7899
Q ss_pred CEEEEechHHHHHHH
Q 032797 99 PLFGVCMGLQCIGEA 113 (133)
Q Consensus 99 PvLGIClG~QlLa~a 113 (133)
++.+||-|..+|+.+
T Consensus 98 ~i~~ic~G~~~La~a 112 (179)
T TIGR01383 98 LVAAICAAPAVLLAA 112 (179)
T ss_pred EEEEEChhHHHHHhc
Confidence 999999999999986
No 120
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.92 E-value=3.1e-05 Score=64.98 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=52.5
Q ss_pred CCCeEEEEEC--CCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH-----HHHHHHH-
Q 032797 23 NKNPIIVIDN--YDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE- 93 (133)
Q Consensus 23 ~~~~i~vid~--~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~-----~~~~i~~- 93 (133)
...+|+|+.. ...|+ -.+.|+. .++.+.+++.. +++. ++|.+||+|+.....|... +.+.+.+
T Consensus 250 ~~i~Iav~~lp~isNFt--D~dpL~~~~~v~v~~v~~~----~~l~--~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~ 321 (486)
T COG1492 250 RAIRIAVIRLPRISNFT--DFDPLRAEPDVRVRFVKPG----SDLR--DADLVILPGSKNTIADLKILREGGMDEKILEY 321 (486)
T ss_pred CceEEEEecCCCccccc--cchhhhcCCCeEEEEeccC----CCCC--CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHH
Confidence 4468888843 22232 1233443 47777777653 3454 5899999777554444322 2233444
Q ss_pred hCCCCCEEEEechHHHHHHHh
Q 032797 94 LGPTVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 94 ~~~~~PvLGIClG~QlLa~a~ 114 (133)
...+.||+|||-|+|||...+
T Consensus 322 ~~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 322 ARKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred HhCCCCEEEEcchHHhhhhhh
Confidence 466899999999999997754
No 121
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=97.87 E-value=4.9e-06 Score=59.05 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=40.9
Q ss_pred CHHHHccCCCCEEEECCCCCCcC----CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 60 TVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 60 ~~~~l~~~~~DgvIl~GG~~~~~----d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+.+++...+||+||++||.+.+. +...+.++++++ ++++|+.+||.|-.+|+.+
T Consensus 29 ~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 29 TLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp EGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred cHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 45666656899999999987332 335577888886 7899999999999999886
No 122
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.87 E-value=8e-05 Score=54.34 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=38.3
Q ss_pred CCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 67 KNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.++|.++++||.... .+...+.++++++ .+++++.+||-|.++|+.+
T Consensus 63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 379999999986643 2345577889885 7899999999999999986
No 123
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.87 E-value=3.2e-05 Score=53.44 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=33.4
Q ss_pred CCCCEEEECCCCCCcCCc---hHHHHHHHH-hCCCCCEEEEechHHHHHHHhCCeee
Q 032797 67 KNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~d~---~~~~~~i~~-~~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
.++|.+|++||.....-. ..-.+.|++ .++++|+||||+|.-+. ..-||-..
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a-~~~~G~~~ 98 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALNGKGNRRIRNFVRNGGNYLGICAGAYLA-YFNGGPVF 98 (114)
T ss_pred hCCCEEEECCCChHHHHHHHHhhCcHHHHHHHHCCCcEEEEecCccce-EEcCCeee
Confidence 379999998864422100 001456666 47889999999999776 44444333
No 124
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.86 E-value=8.8e-06 Score=60.61 Aligned_cols=69 Identities=20% Similarity=0.356 Sum_probs=44.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC----CchHHHHHHHHh-CCC-CCEEEEechHHHHHHH
Q 032797 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPT-VPLFGVCMGLQCIGEA 113 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~----d~~~~~~~i~~~-~~~-~PvLGIClG~QlLa~a 113 (133)
=.+.|+++|.+...++. .+++. +.||+||+||-.+.- +...+.+.|+++ ..+ +|+||.|-|+-+||..
T Consensus 11 H~~~l~~lg~~~~~Vr~----~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~ 84 (188)
T PF01174_consen 11 HIRMLERLGAEVVEVRT----PEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE 84 (188)
T ss_dssp HHHHHHHTTSEEEEE-S----GGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE
T ss_pred HHHHHHHcCCCeEEeCC----HHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh
Confidence 35678889998876654 46775 799999999954211 111245667764 444 9999999999999984
Q ss_pred h
Q 032797 114 F 114 (133)
Q Consensus 114 ~ 114 (133)
.
T Consensus 85 v 85 (188)
T PF01174_consen 85 V 85 (188)
T ss_dssp E
T ss_pred h
Confidence 3
No 125
>PRK11249 katE hydroperoxidase II; Provisional
Probab=97.85 E-value=6.5e-05 Score=66.21 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=63.1
Q ss_pred CCCCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCC--------------CCHHHHccCCCCEEEECCCCCCcC--
Q 032797 22 NNKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAPQ-- 82 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~GG~~~~~-- 82 (133)
..+++|+||-..+... ..+.+.|++.|+.+.++.... .+.++.+...||+|+|+||..++.
T Consensus 595 ~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L 674 (752)
T PRK11249 595 IKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADL 674 (752)
T ss_pred ccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHH
Confidence 4567888885432222 246778888999988875421 011122223699999999865432
Q ss_pred -CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 83 -DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 83 -d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.....+.+|+++ .+.++|.+||-|.++|+.+
T Consensus 675 ~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 675 ADNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred hhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 344577888884 8899999999999999974
No 126
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=97.69 E-value=0.00012 Score=58.21 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=54.4
Q ss_pred cccCC-CCCeEEEEECCCCchH---HHHHHHHhCCCeEE--EEeCCC---------------CCHHHHccCCCCEEEECC
Q 032797 18 KKSKN-NKNPIIVIDNYDSFTY---NLCQYMGELGYHFE--VYRNDE---------------LTVEELKRKNPRGVLISP 76 (133)
Q Consensus 18 ~~~~~-~~~~i~vid~~~~~~~---~i~~~l~~~G~~~~--v~~~~~---------------~~~~~l~~~~~DgvIl~G 76 (133)
++.|. ...+|+||+.-..-.. -+.+.|.....+++ .+.... .+.+++....|||+||+|
T Consensus 27 a~~qdirpL~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITG 106 (298)
T PF04204_consen 27 AMHQDIRPLKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITG 106 (298)
T ss_dssp ---TTS--EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE--
T ss_pred cccccccceEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeC
Confidence 44553 3368999987433222 24444444444443 332211 123445556899999999
Q ss_pred CCCCcCC---chH---HHHHHHHh-CCCCCEEEEechHHH-HHHHhCCeeeeccCCcceeee
Q 032797 77 GPGAPQD---SGI---SLQTVLEL-GPTVPLFGVCMGLQC-IGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 77 G~~~~~d---~~~---~~~~i~~~-~~~~PvLGIClG~Ql-La~a~GG~v~~~~~~~~g~~~ 130 (133)
.|-.-.+ .+. +.+++... .+-.+.|.||+|.|. |...+|-.-...++.-+|...
T Consensus 107 APvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~ 168 (298)
T PF04204_consen 107 APVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFE 168 (298)
T ss_dssp -TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEE
T ss_pred CCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcceecee
Confidence 9864322 222 22233222 456899999999999 888899887777776666543
No 127
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.61 E-value=0.00051 Score=54.62 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=67.6
Q ss_pred cccCC-CCCeEEEEECCCCc---hHHHHHHHHhCCCe--EEEEeCCC---------------CCHHHHccCCCCEEEECC
Q 032797 18 KKSKN-NKNPIIVIDNYDSF---TYNLCQYMGELGYH--FEVYRNDE---------------LTVEELKRKNPRGVLISP 76 (133)
Q Consensus 18 ~~~~~-~~~~i~vid~~~~~---~~~i~~~l~~~G~~--~~v~~~~~---------------~~~~~l~~~~~DgvIl~G 76 (133)
+.+|. .+.+|+|++.-..- ...+.+.|.....+ ++.+.... .+.+++....+||+||+|
T Consensus 28 a~~qdirpL~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITG 107 (300)
T TIGR01001 28 ASHQDIRPLEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITG 107 (300)
T ss_pred hccccccceeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcC
Confidence 34443 34789999764322 12366666554444 44433211 234556567899999999
Q ss_pred CCCC--cC-CchHH---HHHHHHh-CCCCCEEEEechHHH-HHHHhCCeeeeccCCcceee
Q 032797 77 GPGA--PQ-DSGIS---LQTVLEL-GPTVPLFGVCMGLQC-IGEAFGDCAFSAWCHAWKKF 129 (133)
Q Consensus 77 G~~~--~~-d~~~~---~~~i~~~-~~~~PvLGIClG~Ql-La~a~GG~v~~~~~~~~g~~ 129 (133)
.|-. ++ +.+.+ .+++.-. .+-...|.||+|.|. |...+|-.=...++.-+|..
T Consensus 108 APvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfGVf 168 (300)
T TIGR01001 108 APVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSGVY 168 (300)
T ss_pred CCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCceEEee
Confidence 9863 22 22222 2233222 467899999999999 67777777667777777643
No 128
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.60 E-value=0.00048 Score=49.92 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=37.0
Q ss_pred CCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 68 NPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 68 ~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.||.++++||++.. .......+++++. ++++++.+||-|..+|+.+
T Consensus 62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 79999999996532 2344577888885 7899999999999999874
No 129
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.56 E-value=0.00015 Score=55.82 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=59.9
Q ss_pred CCCeEEEEECC------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC----CchHHHHHHH
Q 032797 23 NKNPIIVIDNY------DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVL 92 (133)
Q Consensus 23 ~~~~i~vid~~------~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~----d~~~~~~~i~ 92 (133)
.+++|++|-.- +.|...+.+.+++.|+++..++..+...+.+. ..|+|+++||..... ....+.+.|+
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~--~ad~I~v~GGnt~~l~~~l~~~gl~~~l~ 107 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE--NAEAIFVGGGNTFQLLKQLYERGLLAPIR 107 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh--cCCEEEECCccHHHHHHHHHHCCcHHHHH
Confidence 46789999432 23455677788899999877754321122243 799999999843111 1111345666
Q ss_pred H-hCCCCCEEEEechHHHHHHHhC
Q 032797 93 E-LGPTVPLFGVCMGLQCIGEAFG 115 (133)
Q Consensus 93 ~-~~~~~PvLGIClG~QlLa~a~G 115 (133)
+ +++++|+.|.|-|+-+++...+
T Consensus 108 ~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 108 EAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HHHHCCCEEEEECHHHHhhhccce
Confidence 5 5788999999999988877554
No 130
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=97.49 E-value=0.00043 Score=53.18 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=49.4
Q ss_pred HHHHHHhCCCeEEEEeCCC---------------CCHHHHccCCCCEEEECCC-CCCcC--CchHHHHHHHHh-CCCCCE
Q 032797 40 LCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPG-PGAPQ--DSGISLQTVLEL-GPTVPL 100 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~---------------~~~~~l~~~~~DgvIl~GG-~~~~~--d~~~~~~~i~~~-~~~~Pv 100 (133)
..+.|++.|+++++...+. ....|.....||.+||+|| ++.-. +.....+++++. +.++++
T Consensus 24 p~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLI 103 (247)
T KOG2764|consen 24 PIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLI 103 (247)
T ss_pred eHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeE
Confidence 3678899999988764321 1122222358999999999 76543 334456788875 789999
Q ss_pred EEEechHHHHH
Q 032797 101 FGVCMGLQCIG 111 (133)
Q Consensus 101 LGIClG~QlLa 111 (133)
..||.|--++.
T Consensus 104 aaICaap~~al 114 (247)
T KOG2764|consen 104 AAICAAPLTAL 114 (247)
T ss_pred EEeecchHHHH
Confidence 99999864443
No 131
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.46 E-value=0.00012 Score=56.00 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-----Cc-hHHHHHHHH-hCCCCCEEEEechHHHHH
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DS-GISLQTVLE-LGPTVPLFGVCMGLQCIG 111 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-----d~-~~~~~~i~~-~~~~~PvLGIClG~QlLa 111 (133)
.+.+..+.+|+.+++++.... +..+...+|.+++.||.. .. +. ..-.+-++. +++++|+|.||-|.|+|.
T Consensus 25 ~Lr~ra~~rgi~v~i~~vsl~--d~~~~~~~Dl~~~GGgqD-~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG 101 (250)
T COG3442 25 VLRQRAEKRGIKVEIVEVSLT--DTFPDDSYDLYFLGGGQD-YEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLG 101 (250)
T ss_pred eehHHHHhcCCceEEEEeecC--CCCCcccccEEEecCchH-HHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhcc
Confidence 356777889999998876422 223334799888866632 11 11 111244555 488999999999999998
Q ss_pred HH
Q 032797 112 EA 113 (133)
Q Consensus 112 ~a 113 (133)
+.
T Consensus 102 ~y 103 (250)
T COG3442 102 QY 103 (250)
T ss_pred ce
Confidence 74
No 132
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.28 E-value=0.00056 Score=50.26 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=36.8
Q ss_pred CCCEEEECCCCCCcC-----CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 68 NPRGVLISPGPGAPQ-----DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~-----d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+||.|+|+||.+... ....+.+++++. ++++++.+||-|.++|+.+
T Consensus 69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 799999999865432 334567888875 7899999999999999874
No 133
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=97.24 E-value=0.0019 Score=47.75 Aligned_cols=95 Identities=14% Similarity=0.241 Sum_probs=57.0
Q ss_pred cccCCCCCeE-EEEECCCCchH---HHHHHHHhC--CCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC----CchHH
Q 032797 18 KKSKNNKNPI-IVIDNYDSFTY---NLCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGIS 87 (133)
Q Consensus 18 ~~~~~~~~~i-~vid~~~~~~~---~i~~~l~~~--G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~----d~~~~ 87 (133)
+.+.++.+.| -|+-..+.|.. -+.+.+-+. ++...+.+. .+.+|+. .+|++||+||....- ....+
T Consensus 4 asM~GKtn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tV--KT~~D~a--q~DaLIIPGGEST~mslia~~tgL 79 (226)
T KOG3210|consen 4 ASMTGKTNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTV--KTKNDLA--QCDALIIPGGESTAMSLIAERTGL 79 (226)
T ss_pred ccccCCcceEEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEee--cCHHHHh--hCCEEEecCCchhHHHHHHhhhhh
Confidence 3444444443 45555455533 244455554 556666665 4677775 799999999965321 11113
Q ss_pred HHHHHHh--CCCCCEEEEechHHHHHHHhCC
Q 032797 88 LQTVLEL--GPTVPLFGVCMGLQCIGEAFGD 116 (133)
Q Consensus 88 ~~~i~~~--~~~~PvLGIClG~QlLa~a~GG 116 (133)
.+-+.++ +..+|++|-|-||-.|..-+-+
T Consensus 80 ~d~L~~fVhn~~k~~WGTCAGmI~LS~ql~n 110 (226)
T KOG3210|consen 80 YDDLYAFVHNPSKVTWGTCAGMIYLSQQLSN 110 (226)
T ss_pred HHHHHHHhcCCCccceeechhhhhhhhhhcC
Confidence 3444443 4559999999999999775544
No 134
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=97.15 E-value=0.004 Score=49.37 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=36.3
Q ss_pred CCCCEEEECCCCCCc-CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 67 KNPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~-~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.++|.||++||.+.. .....+.++|++. .+++++.+||-|..+|+.+
T Consensus 74 ~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 74 DRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 379999998885422 2344567888885 6889999999999999874
No 135
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.06 E-value=0.0024 Score=53.23 Aligned_cols=96 Identities=17% Similarity=0.252 Sum_probs=63.9
Q ss_pred ccccccCCCCCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-----CchH
Q 032797 15 LDDKKSKNNKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGI 86 (133)
Q Consensus 15 ~~~~~~~~~~~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-----d~~~ 86 (133)
.++........||+|..- ..|. ..-.+.|++.|++++.+.+- .-++++ .+.|++.|+||.-..+ +...
T Consensus 236 ~~~~~~~~~~~rIAVA~D-~AF~FyY~~nl~~Lr~~GAelv~FSPL--~D~~lP-~~~D~vYlgGGYPElfA~~L~~n~~ 311 (451)
T COG1797 236 PEPERGNPLGVRIAVARD-AAFNFYYPENLELLREAGAELVFFSPL--ADEELP-PDVDAVYLGGGYPELFAEELSANES 311 (451)
T ss_pred ccccccCCcCceEEEEec-chhccccHHHHHHHHHCCCEEEEeCCc--CCCCCC-CCCCEEEeCCCChHHHHHHHhhCHH
Confidence 333444455578988831 1332 23456789999999877652 123444 3699999999853222 2223
Q ss_pred HHHHHHHh-CCCCCEEEEechHHHHHHHh
Q 032797 87 SLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 87 ~~~~i~~~-~~~~PvLGIClG~QlLa~a~ 114 (133)
.++.|+++ +.++|++|=|-|+--|++.+
T Consensus 312 ~~~~i~~~~~~G~piyaECGGlMYL~~~l 340 (451)
T COG1797 312 MRRAIKAFAAAGKPIYAECGGLMYLGESL 340 (451)
T ss_pred HHHHHHHHHHcCCceEEecccceeehhhe
Confidence 56778775 78999999999999888766
No 136
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=96.91 E-value=0.0013 Score=47.13 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=36.6
Q ss_pred CCCCEEEECCCCC--CcCCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 67 KNPRGVLISPGPG--APQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 67 ~~~DgvIl~GG~~--~~~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.++|.+|++||+. .......+.+++++. .+++++.+||-|..+|+++
T Consensus 60 ~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 60 PDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp SCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred ccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 4799999999987 223345567888775 7889999999999999996
No 137
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=96.90 E-value=0.0021 Score=46.87 Aligned_cols=46 Identities=20% Similarity=0.111 Sum_probs=36.9
Q ss_pred CCCEEEECCCCCCc-CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 68 NPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 68 ~~DgvIl~GG~~~~-~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
++|.|+++||.+.. .......+++++. ++++.+.+||-|..+|+.+
T Consensus 64 ~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 64 PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 79999999986533 2344567888885 7889999999999999874
No 138
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=96.79 E-value=0.0037 Score=48.78 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHc--cCCCCEEEECCCCCCcCCchHHHHH-----HHHh--CCCCCEEEEechHHH
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQT-----VLEL--GPTVPLFGVCMGLQC 109 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~--~~~~DgvIl~GG~~~~~d~~~~~~~-----i~~~--~~~~PvLGIClG~Ql 109 (133)
++++.++..|+.+..+.+++ +.+.+. -+-..|||++||-..-.|.-+..+. +.+. ..--||.|||+|+.+
T Consensus 81 SYVK~aEsgGARViPli~ne-pEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~ 159 (340)
T KOG1559|consen 81 SYVKLAESGGARVIPLIYNE-PEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFEL 159 (340)
T ss_pred HHHHHHHcCCceEEEEecCC-cHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHH
Confidence 46777777899988777763 333332 1368999999994333343333222 2232 357899999999999
Q ss_pred HHHHh
Q 032797 110 IGEAF 114 (133)
Q Consensus 110 La~a~ 114 (133)
|..-.
T Consensus 160 lsmiI 164 (340)
T KOG1559|consen 160 LSMII 164 (340)
T ss_pred HHHHH
Confidence 87643
No 139
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=96.77 E-value=0.0063 Score=45.57 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=58.3
Q ss_pred CCCeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCCC-CCHHHHc--cCCCCEEEECCCCCCcC----CchHHHHHH
Q 032797 23 NKNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE-LTVEELK--RKNPRGVLISPGPGAPQ----DSGISLQTV 91 (133)
Q Consensus 23 ~~~~i~vid~~~----~~~~~i~~~l~~~G~~~~v~~~~~-~~~~~l~--~~~~DgvIl~GG~~~~~----d~~~~~~~i 91 (133)
...+|++|.... .+...+.+.+++.|++...+.... .+.++.. -...|+|+++||...-. ......+.|
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 578999996543 345567788899999877655321 1111211 13799999999732110 011123344
Q ss_pred HH-hCCCCCEEEEechHHHHHHH
Q 032797 92 LE-LGPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 92 ~~-~~~~~PvLGIClG~QlLa~a 113 (133)
++ +.++.|+.|.|-|+.++...
T Consensus 108 ~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 108 LKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHcCCeEEEcCHHHHHhhhc
Confidence 43 46899999999999999986
No 140
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=95.85 E-value=0.06 Score=42.32 Aligned_cols=109 Identities=18% Similarity=0.266 Sum_probs=58.6
Q ss_pred cccccCCCC-CeEEEEECCCCchH---HHHHHHHh--CCCeEEEEeCCC---------------CCHHHHccCCCCEEEE
Q 032797 16 DDKKSKNNK-NPIIVIDNYDSFTY---NLCQYMGE--LGYHFEVYRNDE---------------LTVEELKRKNPRGVLI 74 (133)
Q Consensus 16 ~~~~~~~~~-~~i~vid~~~~~~~---~i~~~l~~--~G~~~~v~~~~~---------------~~~~~l~~~~~DgvIl 74 (133)
++++.|... .+|+|++.-..-.. -+.+.|.. +.++++.++.+. .+.+++....|||+||
T Consensus 26 ~rA~~QdIRPL~IlilNLMP~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~Ii 105 (307)
T COG1897 26 SRAKHQDIRPLKILILNLMPKKIETETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLII 105 (307)
T ss_pred hhhhhcCCccceeeeeecCchhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEE
Confidence 345666444 57888876332111 24444433 234444443321 2355666678999999
Q ss_pred CCCCCCcC---CchHH--HHHHHHh--CCCCCEEEEechHHHHHHHh-CCeeeeccCC
Q 032797 75 SPGPGAPQ---DSGIS--LQTVLEL--GPTVPLFGVCMGLQCIGEAF-GDCAFSAWCH 124 (133)
Q Consensus 75 ~GG~~~~~---d~~~~--~~~i~~~--~~~~PvLGIClG~QlLa~a~-GG~v~~~~~~ 124 (133)
+|.|-.-. +...+ +..|.++ .+-.-.|-||.|.|.--.++ |-.=...++.
T Consensus 106 TGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~K 163 (307)
T COG1897 106 TGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEK 163 (307)
T ss_pred eCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchh
Confidence 99986422 22222 1222222 34457799999999865544 4443344443
No 141
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.83 E-value=0.13 Score=41.01 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=48.8
Q ss_pred CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCC---------------CHHHHccCCCCEEEECCCCCCcCCc
Q 032797 25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGAPQDS 84 (133)
Q Consensus 25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~~---------------~~~~l~~~~~DgvIl~GG~~~~~d~ 84 (133)
++|+++-+.+.- ...+.++|++.|+++.+.+.... +..++. ..+|.+|..||-|
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDG----- 79 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGDG----- 79 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCcH-----
Confidence 458888654332 23466788889998876532100 011221 2589999999944
Q ss_pred hHHHHHHHHh-CCCCCEEEEechH
Q 032797 85 GISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 85 ~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
.++...+.+ ..++|+|||=.|.
T Consensus 80 -T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 -TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred -HHHHHHHHhcccCCCEEEEecCC
Confidence 455666665 5689999999987
No 142
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=95.53 E-value=0.071 Score=40.75 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=55.3
Q ss_pred CCeEEEEEC------CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCch------HHHH
Q 032797 24 KNPIIVIDN------YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG------ISLQ 89 (133)
Q Consensus 24 ~~~i~vid~------~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~~------~~~~ 89 (133)
+.+|+.|-. .+.|.....++|++.|+.+.-++....+.+++.. .+.|.|.++||. -...- -..+
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGN--TF~LL~~lke~gld~ 109 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGN--TFNLLQELKETGLDD 109 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCch--HHHHHHHHHHhCcHH
Confidence 458999822 2234555677899999999877765455666653 368999998873 11111 1356
Q ss_pred HHHH-hCCCCCEEEEechHH
Q 032797 90 TVLE-LGPTVPLFGVCMGLQ 108 (133)
Q Consensus 90 ~i~~-~~~~~PvLGIClG~Q 108 (133)
.|++ +++++|..|+--|.-
T Consensus 110 iIr~~vk~G~~YiG~SAGA~ 129 (224)
T COG3340 110 IIRERVKAGTPYIGWSAGAN 129 (224)
T ss_pred HHHHHHHcCCceEEeccCce
Confidence 6776 589999999876653
No 143
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.43 E-value=0.14 Score=40.69 Aligned_cols=76 Identities=20% Similarity=0.195 Sum_probs=48.6
Q ss_pred CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCC----------------CHHHHccCCCCEEEECCCCCCcCC
Q 032797 25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL----------------TVEELKRKNPRGVLISPGPGAPQD 83 (133)
Q Consensus 25 ~~i~vid~~~~-~----~~~i~~~l~~~G~~~~v~~~~~~----------------~~~~l~~~~~DgvIl~GG~~~~~d 83 (133)
|+|.++-+.+. . ...+.++|++.|+++.+.+.... +.+++. ..+|.+|..||-|
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDG---- 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGDG---- 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCcH----
Confidence 57888855432 1 23466788889998876432100 011222 2589999999944
Q ss_pred chHHHHHHHHh-CCCCCEEEEechH
Q 032797 84 SGISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 84 ~~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
.++...+.+ ..++|+|||=.|.
T Consensus 76 --T~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 76 --TFLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred --HHHHHHHHhcCCCCCEEEEecCC
Confidence 455666665 5689999999986
No 144
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.42 E-value=0.12 Score=40.77 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=49.2
Q ss_pred CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCC--CC-H-----HHHccCCCCEEEECCCCCCcCCchHHHHHH
Q 032797 25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDE--LT-V-----EELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (133)
Q Consensus 25 ~~i~vid~~~~-~----~~~i~~~l~~~G~~~~v~~~~~--~~-~-----~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i 91 (133)
|||.|+-+.+. . ...+.++|++.|.++.+.+... .. . .+....++|.+|..||-| .+.+.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------TlL~a~ 74 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG------TILRIE 74 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH------HHHHHH
Confidence 67888866433 2 2346778888999888753210 00 0 112223689999999954 345566
Q ss_pred HHhCCCCCEEEEechH
Q 032797 92 LELGPTVPLFGVCMGL 107 (133)
Q Consensus 92 ~~~~~~~PvLGIClG~ 107 (133)
+....++|++||=.|.
T Consensus 75 ~~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 75 HKTKKDIPILGINMGT 90 (277)
T ss_pred HhcCCCCeEEEEeCCC
Confidence 6336689999999987
No 145
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=95.38 E-value=0.21 Score=36.58 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=45.8
Q ss_pred CeEEEE-ECCCCchHHHHHHHHh-C--CCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHh---CC
Q 032797 25 NPIIVI-DNYDSFTYNLCQYMGE-L--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL---GP 96 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~~l~~-~--G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~---~~ 96 (133)
|+++|+ ....+.|..+.+++.+ . |.++++++..+....++. +||.||+ |+|-... -...+.+++++. -+
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l~--~yD~vIl-Gspi~~G~~~~~~~~fl~~~~~~l~ 77 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEEPDLS--DYDRVVI-GASIRYGHFHSALYKFVKKHATQLN 77 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCHH--HCCEEEE-ECccccCCcCHHHHHHHHHHHHHhC
Confidence 456555 5555777777666543 1 667887776433223343 7999988 5443211 123344555442 35
Q ss_pred CCCEEEEechH
Q 032797 97 TVPLFGVCMGL 107 (133)
Q Consensus 97 ~~PvLGIClG~ 107 (133)
++|+.-.|-|+
T Consensus 78 ~K~v~~F~v~l 88 (177)
T PRK11104 78 QMPSAFFSVNL 88 (177)
T ss_pred CCeEEEEEech
Confidence 78888777773
No 146
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=95.35 E-value=0.25 Score=39.23 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=49.1
Q ss_pred CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCC----------CCHHHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~----------~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
++|.++-+.+.- ...+.++|++.|+++.+..... .+.+++. ..+|.+|..||-| .+.+
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDG------t~l~ 78 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIG-ARADLAVVLGGDG------TMLG 78 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhc-cCCCEEEEECCcH------HHHH
Confidence 458888654332 2346778888898876643210 0112222 3689999999844 4566
Q ss_pred HHHHh-CCCCCEEEEechH
Q 032797 90 TVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 90 ~i~~~-~~~~PvLGIClG~ 107 (133)
.++.+ ..++|+|||=.|.
T Consensus 79 ~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 79 IGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred HHHHhcCCCCCEEEEcCCC
Confidence 77765 5789999999987
No 147
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=95.31 E-value=0.055 Score=44.43 Aligned_cols=85 Identities=14% Similarity=0.214 Sum_probs=50.5
Q ss_pred CeEEEEECCCCchHH---HHHHHHh-CCCeEEEEeCCCCCHHHHc----cCCCCEEEECCCCCCcCCc---hHHHHHHHH
Q 032797 25 NPIIVIDNYDSFTYN---LCQYMGE-LGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQDS---GISLQTVLE 93 (133)
Q Consensus 25 ~~i~vid~~~~~~~~---i~~~l~~-~G~~~~v~~~~~~~~~~l~----~~~~DgvIl~GG~~~~~d~---~~~~~~i~~ 93 (133)
|+|+|-.-.+.-... ..+.|++ ..-...+.+.+ .+.+. ...++.+|++||...++-. +.-.+.||+
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~---~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~ 77 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVT---ADELLNEPWQSKCALLVMPGGADLPYCRSLNGEGNRRIRQ 77 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeC---HHHhhcCccccCCcEEEECCCcchHHHHhhChHHHHHHHH
Confidence 577777543333333 3445554 22233333332 22331 1368999999998766532 223567888
Q ss_pred h-CCCCCEEEEechHHHHHH
Q 032797 94 L-GPTVPLFGVCMGLQCIGE 112 (133)
Q Consensus 94 ~-~~~~PvLGIClG~QlLa~ 112 (133)
+ .++.-.||||-|.-.-..
T Consensus 78 fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 78 FVENGGGYLGICAGAYYASS 97 (367)
T ss_pred HHHcCCcEEEECcchhhhcc
Confidence 5 778999999999876654
No 148
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.076 Score=48.14 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=53.8
Q ss_pred CCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC--CcCCch-----------HH
Q 032797 22 NNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSG-----------IS 87 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~--~~~d~~-----------~~ 87 (133)
.+.+||+||--.+.+. ..+..++..+|+++.=+.-.+.-.....-.+|-|++++||.. ++.... ..
T Consensus 1056 s~~PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v 1135 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESV 1135 (1320)
T ss_pred cCCCceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhH
Confidence 3456999996555543 457778888998764332211111111113799999999964 222111 11
Q ss_pred HHHHHHh--CCCCCEEEEechHHHHHH
Q 032797 88 LQTVLEL--GPTVPLFGVCMGLQCIGE 112 (133)
Q Consensus 88 ~~~i~~~--~~~~PvLGIClG~QlLa~ 112 (133)
.....++ ..+.=-||||.|.|+|+.
T Consensus 1136 ~~QF~~F~~R~DtFslGiCNGCQlms~ 1162 (1320)
T KOG1907|consen 1136 RSQFEAFFNRQDTFSLGICNGCQLMSR 1162 (1320)
T ss_pred HHHHHHHhcCCCceeeecccHhHHHHH
Confidence 2222232 356677999999999987
No 149
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.91 E-value=0.28 Score=39.32 Aligned_cols=76 Identities=17% Similarity=0.299 Sum_probs=48.5
Q ss_pred CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCC------------------C-HHHHccCCCCEEEECCCCCC
Q 032797 25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDEL------------------T-VEELKRKNPRGVLISPGPGA 80 (133)
Q Consensus 25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~~------------------~-~~~l~~~~~DgvIl~GG~~~ 80 (133)
++|+++-+.+.- ...+.++|++.|+++.+...... + .+++ ...+|.+|..||-|
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDG- 83 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGGDG- 83 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEEEcCCH-
Confidence 458888664332 23467788889998876542100 0 0111 12589999999944
Q ss_pred cCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797 81 PQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 81 ~~d~~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
.++...+.+ ..++|+|||=.|.
T Consensus 84 -----T~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 84 -----TILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred -----HHHHHHHHhccCCCcEEEEecCC
Confidence 455666664 6789999999884
No 150
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.84 E-value=0.39 Score=38.15 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=48.5
Q ss_pred CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCC--C--------CHHHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDE--L--------TVEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~--~--------~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
++|.++-+.+.- ...+.++|++.|+++.+.+... . +.+++. .++|.+|..||-| .++.
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~lGGDG------T~L~ 78 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIG-QQADLAIVVGGDG------NMLG 78 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcC-CCCCEEEEECCcH------HHHH
Confidence 458888654332 2346678888998887643210 0 011221 2589999999944 4556
Q ss_pred HHHHh-CCCCCEEEEechH
Q 032797 90 TVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 90 ~i~~~-~~~~PvLGIClG~ 107 (133)
..+.+ ..++|+|||-.|.
T Consensus 79 aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 79 AARVLARYDIKVIGINRGN 97 (292)
T ss_pred HHHHhcCCCCeEEEEECCC
Confidence 66665 4589999999998
No 151
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=94.50 E-value=0.56 Score=33.41 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=30.3
Q ss_pred CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc------cC--CCCEEEECCCCC
Q 032797 33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RK--NPRGVLISPGPG 79 (133)
Q Consensus 33 ~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~------~~--~~DgvIl~GG~~ 79 (133)
+|++...+.+.|++.|+++.....-..+.+++. .. .+|.||.+||.+
T Consensus 18 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 18 EDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred ccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 456666788899999998765432111233221 12 699999999965
No 152
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=94.32 E-value=0.17 Score=39.25 Aligned_cols=93 Identities=13% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCCCCeEEEEECCCC----chHHHHHHHHhCCCe-EEEEeCCCC----CHHHHc-cCCCCEEEECCCCCCc----CCchH
Q 032797 21 KNNKNPIIVIDNYDS----FTYNLCQYMGELGYH-FEVYRNDEL----TVEELK-RKNPRGVLISPGPGAP----QDSGI 86 (133)
Q Consensus 21 ~~~~~~i~vid~~~~----~~~~i~~~l~~~G~~-~~v~~~~~~----~~~~l~-~~~~DgvIl~GG~~~~----~d~~~ 86 (133)
.....||++|-.-+. +...+.+.+++.|++ +.++..... +.+... -...|+|+++||...- .....
T Consensus 25 g~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~ 104 (250)
T TIGR02069 25 GGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTP 104 (250)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCc
Confidence 345579999954332 233566778889984 565554211 111111 1379999999984311 11122
Q ss_pred HHHHHHH-hCCCCCEEEEechHHHHHHH
Q 032797 87 SLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 87 ~~~~i~~-~~~~~PvLGIClG~QlLa~a 113 (133)
+.+.|++ +.++.|+.|.--|.-+|+..
T Consensus 105 l~~~l~~~~~~G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 105 LLDRLRKRVHEGIILGGTSAGAAVMSDT 132 (250)
T ss_pred HHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence 3456765 57789999999999988653
No 153
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=94.01 E-value=0.36 Score=36.45 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=57.7
Q ss_pred CCCCeEEEEECCC----CchHHHHHHHHhCCCe-EEEEeCCC----CCHHHHc-cCCCCEEEECCCCCCcC----CchHH
Q 032797 22 NNKNPIIVIDNYD----SFTYNLCQYMGELGYH-FEVYRNDE----LTVEELK-RKNPRGVLISPGPGAPQ----DSGIS 87 (133)
Q Consensus 22 ~~~~~i~vid~~~----~~~~~i~~~l~~~G~~-~~v~~~~~----~~~~~l~-~~~~DgvIl~GG~~~~~----d~~~~ 87 (133)
..+.+|++|..-. .+...+.+++++.|+. ++++..+. .+.+... -.+.|+|+++||...-. ....+
T Consensus 27 ~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l 106 (217)
T cd03145 27 GAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPL 106 (217)
T ss_pred CCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChH
Confidence 3568999997643 3455577788888985 44443321 1111111 13799999999843111 11123
Q ss_pred HHHHHH-hCCCCCEEEEechHHHHHHH
Q 032797 88 LQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 88 ~~~i~~-~~~~~PvLGIClG~QlLa~a 113 (133)
.+.|++ ++++.|+.|.--|.-+++..
T Consensus 107 ~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 107 LDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 456666 47899999999999998765
No 154
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.90 E-value=0.56 Score=37.56 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=47.4
Q ss_pred eEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCC-------------------CHHHHccCCCCEEEECCCCCCc
Q 032797 26 PIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPGAP 81 (133)
Q Consensus 26 ~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~~-------------------~~~~l~~~~~DgvIl~GG~~~~ 81 (133)
+|.|+-+.+.- ...+.++|++.|+++.+.+.... ...++. .++|.+|.-||-|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDG-- 79 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLGGDG-- 79 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc-cCcCEEEEEeCcH--
Confidence 57888664331 23466788889998876432100 011221 2589999999944
Q ss_pred CCchHHHHHHHHh-CCCCCEEEEechH
Q 032797 82 QDSGISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 82 ~d~~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
.++...+.+ ..++|+|||=.|.
T Consensus 80 ----TlL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 80 ----TVLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred ----HHHHHHHHhcCCCCcEEEEeCCC
Confidence 456666665 5789999998874
No 155
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.83 E-value=0.6 Score=37.05 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=49.1
Q ss_pred CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC-------CHHHHccCCCCEEEECCCCCCcCCchHHHHHHH
Q 032797 24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL-------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (133)
Q Consensus 24 ~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~-------~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~ 92 (133)
.++|.++-+.+... ..+.++|++.|+++.+.+.... ..+++. .++|.+|.-||-| .++...+
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDG------T~L~aa~ 82 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELF-KISDFLISLGGDG------TLISLCR 82 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcc-cCCCEEEEECCCH------HHHHHHH
Confidence 34688886644322 2356678888988876432100 112222 2689999889844 4566666
Q ss_pred Hh-CCCCCEEEEechH
Q 032797 93 EL-GPTVPLFGVCMGL 107 (133)
Q Consensus 93 ~~-~~~~PvLGIClG~ 107 (133)
.+ ..++|+|||=.|.
T Consensus 83 ~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 83 KAAEYDKFVLGIHAGH 98 (287)
T ss_pred HhcCCCCcEEEEeCCC
Confidence 65 5689999999997
No 156
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=93.67 E-value=0.9 Score=32.92 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=37.0
Q ss_pred CCCeEEEE---E----CCCCchHHHHHHHHhCCCeEEEEeCCCCCHHH----Hc----cCCCCEEEECCCCC-CcCCc
Q 032797 23 NKNPIIVI---D----NYDSFTYNLCQYMGELGYHFEVYRNDELTVEE----LK----RKNPRGVLISPGPG-APQDS 84 (133)
Q Consensus 23 ~~~~i~vi---d----~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~----l~----~~~~DgvIl~GG~~-~~~d~ 84 (133)
...++.|| | -+|++...+..+|++.|+++..+..-..+.++ +. ..++|.||.+||.+ ++.|.
T Consensus 3 ~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~ 80 (163)
T TIGR02667 3 IPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDV 80 (163)
T ss_pred CccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCC
Confidence 34566655 2 24556667888899999987654321012222 11 13699999999976 44443
No 157
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=93.47 E-value=0.34 Score=35.61 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=47.4
Q ss_pred CeEEEE-ECCCCchHHHHH----HHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHh---C
Q 032797 25 NPIIVI-DNYDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL---G 95 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~----~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~---~ 95 (133)
||+||+ ...++.+..+.+ -|++.|.++++.+.... .++...+||.||| |.+-... .......++++. -
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~--~~~~l~~ydavVI-gAsI~~~h~~~~~~~Fv~k~~e~L 77 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV--EEPALEDYDAVVI-GASIRYGHFHEAVQSFVKKHAEAL 77 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh--hccChhhCceEEE-ecchhhhhhHHHHHHHHHHHHHHH
Confidence 567766 556677776554 46788999999886532 2222248999999 4322111 112233455432 3
Q ss_pred CCCCEEEEechH
Q 032797 96 PTVPLFGVCMGL 107 (133)
Q Consensus 96 ~~~PvLGIClG~ 107 (133)
..+|.--+|.+.
T Consensus 78 ~~kP~A~f~vnl 89 (175)
T COG4635 78 STKPSAFFSVNL 89 (175)
T ss_pred hcCCceEEEeeh
Confidence 567888777664
No 158
>PLN02929 NADH kinase
Probab=93.31 E-value=0.41 Score=38.33 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEech
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIClG 106 (133)
.+.++|++.|+++..+...+. .+. ..++|.+|.-||-| .++...+.+..++|++||=.|
T Consensus 38 ~~~~~L~~~gi~~~~v~r~~~--~~~-~~~~Dlvi~lGGDG------T~L~aa~~~~~~iPvlGIN~G 96 (301)
T PLN02929 38 FCKDILQQKSVDWECVLRNEL--SQP-IRDVDLVVAVGGDG------TLLQASHFLDDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHHcCCEEEEeecccc--ccc-cCCCCEEEEECCcH------HHHHHHHHcCCCCcEEEEECC
Confidence 466788899998865532211 111 13789999999954 345555556678999999998
No 159
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=92.79 E-value=0.59 Score=32.38 Aligned_cols=60 Identities=28% Similarity=0.451 Sum_probs=33.9
Q ss_pred CCCchHHHHHHHHhCCCeEEEEe--CCCCC-H-HHHc--cCCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797 33 YDSFTYNLCQYMGELGYHFEVYR--NDELT-V-EELK--RKNPRGVLISPGPGAPQDSGISLQTVLE 93 (133)
Q Consensus 33 ~~~~~~~i~~~l~~~G~~~~v~~--~~~~~-~-~~l~--~~~~DgvIl~GG~~~~~d~~~~~~~i~~ 93 (133)
+|.....+.++|++.|+++.... .|+.. . +.+. ...+|.||.+||-+ +...+...+.+++
T Consensus 16 ~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g-~g~~D~t~~~l~~ 81 (135)
T smart00852 16 YDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG-PGPDDVTPEAVAE 81 (135)
T ss_pred ccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCcCcHHHHHH
Confidence 35666678899999998764332 12211 1 1121 13699999999976 3333333344444
No 160
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=92.65 E-value=0.067 Score=38.12 Aligned_cols=72 Identities=8% Similarity=0.138 Sum_probs=45.1
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCc------hHHHHHHHHh-CCCCCEEEEechH
Q 032797 37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS------GISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 37 ~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~------~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
...+.+.|++.|++++.++....+.++... ..+|+|+++||. +... ..+.+.|++. .+++|+.|.--|.
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~--~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA 79 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGD--TFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGA 79 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCC--HHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHH
Confidence 445678899999998877664322223221 379999999983 2211 1235677764 7789999999998
Q ss_pred HHH
Q 032797 108 QCI 110 (133)
Q Consensus 108 QlL 110 (133)
-++
T Consensus 80 ~i~ 82 (154)
T PF03575_consen 80 MIL 82 (154)
T ss_dssp HCT
T ss_pred hhc
Confidence 664
No 161
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=92.63 E-value=0.26 Score=31.84 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=48.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~-~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
|+|+|........+.+.|+..|+ .+............+....+|.+++--...+ .+.....+.|++...+.|++.++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEec
Confidence 67888766667778888998888 6655432111122334457999988433211 22334556676656789999988
No 162
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.55 E-value=1.2 Score=35.40 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=46.9
Q ss_pred eEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCC----------CHHHHccCCCCEEEECCCCCCcCCchHHHHH
Q 032797 26 PIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQT 90 (133)
Q Consensus 26 ~i~vid~~~~-~----~~~i~~~l~~~G~~~~v~~~~~~----------~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~ 90 (133)
+|.|+-+.+. . ...+.++|++.|+++.+.+.... ...++ ...+|.+|..||-| .+...
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDG------t~l~~ 78 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLL-GEVCDLVIVVGGDG------SLLGA 78 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-ccCCCEEEEEeCcH------HHHHH
Confidence 5888865333 2 22466778888998877542100 01112 13589999989844 34455
Q ss_pred HHHh-CCCCCEEEEechH
Q 032797 91 VLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 91 i~~~-~~~~PvLGIClG~ 107 (133)
.+.+ ..++|++||=.|.
T Consensus 79 ~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 79 ARALARHNVPVLGINRGR 96 (295)
T ss_pred HHHhcCCCCCEEEEeCCc
Confidence 5655 5789999999875
No 163
>PRK05569 flavodoxin; Provisional
Probab=92.47 E-value=2.5 Score=29.12 Aligned_cols=76 Identities=11% Similarity=0.049 Sum_probs=42.6
Q ss_pred eEEEE-ECCCCchHHHHHHH----HhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCC---cCCchHHHHHHHHh---
Q 032797 26 PIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA---PQDSGISLQTVLEL--- 94 (133)
Q Consensus 26 ~i~vi-d~~~~~~~~i~~~l----~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~---~~d~~~~~~~i~~~--- 94 (133)
+|+|+ ....+++..+.+.+ ++.|.++++.+....+..++. ++|+|++ |.|-- ......+..++..+
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsPty~~~~~~~~~~~~~~~~l~~~ 79 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVL--EADAVAF-GSPSMDNNNIEQEEMAPFLDQFKLT 79 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHh--hCCEEEE-ECCCcCCCcCChHHHHHHHHHhhcc
Confidence 55555 44445666666554 446888888776544455554 7999999 55421 11112334444443
Q ss_pred C-CCCCEEEEe
Q 032797 95 G-PTVPLFGVC 104 (133)
Q Consensus 95 ~-~~~PvLGIC 104 (133)
. .++++.-++
T Consensus 80 ~~~~K~v~~f~ 90 (141)
T PRK05569 80 PNENKKCILFG 90 (141)
T ss_pred CcCCCEEEEEe
Confidence 2 467765554
No 164
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.41 E-value=0.34 Score=34.47 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=27.0
Q ss_pred CCCEEEECCCCCCcC---CchHHHHHHHHhCCCCCEEEEec
Q 032797 68 NPRGVLISPGPGAPQ---DSGISLQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~---d~~~~~~~i~~~~~~~PvLGICl 105 (133)
..|.+|+.||-..|. +.+...+++.+. .++|+.|+|+
T Consensus 85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~-~~kkliGvCf 124 (154)
T COG4090 85 SADVVVLLGGLAMPKIGVTPDDAKELLEEL-GNKKLIGVCF 124 (154)
T ss_pred cccEEEEEcccccCcCCCCHHHHHHHHHhc-CCCceEEeeH
Confidence 599999999977665 334456666654 3459999995
No 165
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.38 E-value=0.7 Score=36.25 Aligned_cols=64 Identities=28% Similarity=0.441 Sum_probs=41.6
Q ss_pred CeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-C--CC
Q 032797 25 NPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G--PT 97 (133)
Q Consensus 25 ~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~--~~ 97 (133)
|++.++.+...... .+.++|++.|+++ + ..++|.+|.-||-| .++...+.+ . .+
T Consensus 1 M~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~-----~--------~~~~Dlvi~iGGDG------T~L~a~~~~~~~~~~ 61 (265)
T PRK04885 1 MKVAIISNGDPKSKRVASKLKKYLKDFGFIL-----D--------EKNPDIVISVGGDG------TLLSAFHRYENQLDK 61 (265)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHcCCcc-----C--------CcCCCEEEEECCcH------HHHHHHHHhcccCCC
Confidence 46788866332222 2455666677752 1 02579999999944 455666665 3 58
Q ss_pred CCEEEEechH
Q 032797 98 VPLFGVCMGL 107 (133)
Q Consensus 98 ~PvLGIClG~ 107 (133)
+|++||=.|.
T Consensus 62 iPilGIN~G~ 71 (265)
T PRK04885 62 VRFVGVHTGH 71 (265)
T ss_pred CeEEEEeCCC
Confidence 9999999885
No 166
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.36 E-value=1.2 Score=35.55 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=46.0
Q ss_pred CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCC--CHH---HHccCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 032797 25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL--TVE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (133)
Q Consensus 25 ~~i~vid~~~~-~----~~~i~~~l~~~G~~~~v~~~~~~--~~~---~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~ 94 (133)
++++++-+.+. . ...+.++|++.|+++.+.+.... ... ......+|.+|..||-| .+.+.++.+
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------T~l~~~~~~ 77 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG------TVLAAARHL 77 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH------HHHHHHHHh
Confidence 45777755332 2 12356678888998876543211 000 11123689999999844 355666665
Q ss_pred -CCCCCEEEEec
Q 032797 95 -GPTVPLFGVCM 105 (133)
Q Consensus 95 -~~~~PvLGICl 105 (133)
..++|++||=.
T Consensus 78 ~~~~~pv~gin~ 89 (305)
T PRK02645 78 APHDIPILSVNV 89 (305)
T ss_pred ccCCCCEEEEec
Confidence 57899999998
No 167
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.03 E-value=1.2 Score=38.54 Aligned_cols=80 Identities=15% Similarity=0.265 Sum_probs=49.6
Q ss_pred CCCCeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCCCHH----H----H-ccCCCCEEEECCCCCCcCCchHH
Q 032797 22 NNKNPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDELTVE----E----L-KRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 22 ~~~~~i~vid~~~~-~----~~~i~~~l~~~G~~~~v~~~~~~~~~----~----l-~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
..+++|.|+-+... . ...+.++|++.|+++.+.+....... + . ...++|.+|..||-| .+
T Consensus 288 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG------T~ 361 (569)
T PRK14076 288 IKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDG------TV 361 (569)
T ss_pred cCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcH------HH
Confidence 45568988866332 2 22466778888988776432100000 0 0 012579999999944 45
Q ss_pred HHHHHHh-CCCCCEEEEechH
Q 032797 88 LQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 88 ~~~i~~~-~~~~PvLGIClG~ 107 (133)
+...+.+ ..++|+|||=.|.
T Consensus 362 L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 362 LRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred HHHHHHhcCCCCCEEEEcCCC
Confidence 5666665 5689999999885
No 168
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.98 E-value=1.2 Score=34.65 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=43.9
Q ss_pred CeEEEEECCCCc--hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 032797 25 NPIIVIDNYDSF--TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (133)
Q Consensus 25 ~~i~vid~~~~~--~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (133)
|++.++...++. ...+.++|.+.|.++...... . + ...++|.+|.-||-| .++...+.+ ++|++|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~-~~~~~d~vi~iGGDG------T~L~a~~~~--~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEAS-A---S-GKVTADLIIVVGGDG------TVLKAAKKV--GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeeccc-c---c-ccCCCCEEEEECCcH------HHHHHHHHc--CCCEEE
Confidence 567777543322 234666777788766543221 1 1 123789999999954 344555555 799999
Q ss_pred EechH
Q 032797 103 VCMGL 107 (133)
Q Consensus 103 IClG~ 107 (133)
|=.|.
T Consensus 68 in~G~ 72 (256)
T PRK14075 68 FKAGR 72 (256)
T ss_pred EeCCC
Confidence 99886
No 169
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=91.82 E-value=0.071 Score=38.35 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=46.6
Q ss_pred CCCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCCCC--------------HHHHccCCCCEEEECCCCCCcC---
Q 032797 23 NKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGPGAPQ--- 82 (133)
Q Consensus 23 ~~~~i~vid~~~~~---~~~i~~~l~~~G~~~~v~~~~~~~--------------~~~l~~~~~DgvIl~GG~~~~~--- 82 (133)
...+|+.+..-+-. ...+...+|..+.+...+|..+.. .++..+.++|.+||.||-..|.
T Consensus 18 ~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~~~~~~~~~~D~vVlmGGLAMP~~~v 97 (147)
T PF09897_consen 18 DGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDADLEKARKLEVTDIGMQVLGEKKDPHPDVVVLMGGLAMPKSGV 97 (147)
T ss_dssp T-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT-GGG-EEEEEETTEEE-EEEE--S-EEEEEEEGGGGSTTTS-
T ss_pred CCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCChhhhheeeccCcccccccccCCCCCCEEEEEcccccCCCCC
Confidence 34578888765433 334555677777777777764211 0111112589999999966665
Q ss_pred CchHHHHHHHHhCCCCCEEEEec
Q 032797 83 DSGISLQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 83 d~~~~~~~i~~~~~~~PvLGICl 105 (133)
+.+...++|.++..+ .+.|||+
T Consensus 98 ~~e~v~~li~ki~~~-~iiGiCF 119 (147)
T PF09897_consen 98 TPEDVNELIKKISPK-KIIGICF 119 (147)
T ss_dssp -HHHHHHHHHHHEEE-EEEEEEE
T ss_pred CHHHHHHHHHHhCcC-CEEEEeh
Confidence 445567778876322 2999997
No 170
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.04 E-value=0.4 Score=35.47 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=40.5
Q ss_pred CCCCEEEECCCCCCcCCc-------------hHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeee
Q 032797 67 KNPRGVLISPGPGAPQDS-------------GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~d~-------------~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
..+|++|++||.|..... .....+.+.+ +.++|+--||..--++..-||-.+.
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~~ 150 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPLR 150 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCcee
Confidence 478999999999865421 1234555555 7899999999999999999987543
No 171
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.92 E-value=1.3 Score=34.99 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCCC----------CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEech
Q 032797 38 YNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~----------~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG 106 (133)
..+.++|++.|+++.+.+.... +.+++. ..+|.+|.-||-| .++...+.+ ..++|+|||=.|
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGDG------T~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIG-QRAQLAIVIGGDG------NMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhC-cCCCEEEEECCcH------HHHHHHHHhccCCCcEEEEeCC
Confidence 3467788889988876432100 112222 2589999999944 455666665 568999999988
No 172
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=90.54 E-value=0.57 Score=37.97 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=35.8
Q ss_pred CCCEEEECCCCCCcCCc--hHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 68 NPRGVLISPGPGAPQDS--GISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~--~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.+|-+++++|.+..... ....+++++. .++.++-|||-|.-+||++
T Consensus 76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 48888887775533322 4477889885 7899999999999999985
No 173
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.40 E-value=1.3 Score=34.65 Aligned_cols=66 Identities=9% Similarity=0.035 Sum_probs=42.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
||..++.+.+.....+.+.|++.=-.. . . ...++|.+|.-||-| .++...+.+ ..++|++||
T Consensus 1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~-----~-~-----~~~~~D~vi~iGGDG------T~L~a~~~~~~~~iPilGI 63 (259)
T PRK00561 1 MKYKIFASTTPQTEPVLPKLKKVLKKK-----L-A-----VEDGADYLFVLGGDG------FFVSTAANYNCAGCKVVGI 63 (259)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhhC-----C-C-----ccCCCCEEEEECCcH------HHHHHHHHhcCCCCcEEEE
Confidence 467888877666666666665510000 0 0 113689999999944 456666665 678999999
Q ss_pred echH
Q 032797 104 CMGL 107 (133)
Q Consensus 104 ClG~ 107 (133)
=.|.
T Consensus 64 N~G~ 67 (259)
T PRK00561 64 NTGH 67 (259)
T ss_pred ecCC
Confidence 9884
No 174
>PRK06703 flavodoxin; Provisional
Probab=90.22 E-value=3.4 Score=28.94 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=29.6
Q ss_pred CeEEEE-ECCCCchHHHHHH----HHhCCCeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797 25 NPIIVI-DNYDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~~----l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl 74 (133)
++++|+ ....+.+..+.+. ++..|.++++.+..+....++. ++|.|++
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vii 54 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELL--AYDGIIL 54 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHh--cCCcEEE
Confidence 355555 4444556655544 5557888887776544444554 7899988
No 175
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=90.04 E-value=0.6 Score=31.57 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=45.0
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
||+|||....-.+.+.-.|...|.+++.+...+.. ........+++++..|..+ ......+.+.+.....|++-+-
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~-~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlllg 76 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWS-QADWSSPWEACAVILGSCS--KLAELLKELLKWAPHIPVLLLG 76 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHH-HhhhhcCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEEC
Confidence 68999876555667777888899999887653221 1112235777766555333 2222233333335578998653
No 176
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=89.99 E-value=3.5 Score=28.63 Aligned_cols=77 Identities=14% Similarity=0.058 Sum_probs=37.4
Q ss_pred CeEEEE-ECCCCchHHHHHHH----HhCCCeEE-EEeCCCC--CHHHHccCCCCEEEECCCCC-CcCCc-hHHHHHHHHh
Q 032797 25 NPIIVI-DNYDSFTYNLCQYM----GELGYHFE-VYRNDEL--TVEELKRKNPRGVLISPGPG-APQDS-GISLQTVLEL 94 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~~l----~~~G~~~~-v~~~~~~--~~~~l~~~~~DgvIl~GG~~-~~~d~-~~~~~~i~~~ 94 (133)
|+++|+ ....+.+..+.+.+ ...|.+++ +.+..+. ...++ .++|.+|+ |.|- .-... ..+..+++.+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~--~~~d~iil-gs~t~~~g~~p~~~~~fl~~l 77 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDP--ENYDLVFL-GTWTWERGRTPDEMKDFIAEL 77 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCCh--hhCCEEEE-EcCeeCCCcCCHHHHHHHHHh
Confidence 466655 44445666666554 44577765 2222211 11122 26899888 4432 11122 2345566654
Q ss_pred -CCCCCE--EEEe
Q 032797 95 -GPTVPL--FGVC 104 (133)
Q Consensus 95 -~~~~Pv--LGIC 104 (133)
.+++.+ ||.|
T Consensus 78 ~~~~k~~avfgtg 90 (140)
T TIGR01754 78 GYKPSNVAIFGTG 90 (140)
T ss_pred cccCCEEEEEEcC
Confidence 345555 4444
No 177
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=89.91 E-value=2.7 Score=30.81 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=48.0
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
....+|++++........+...|+..|+++..........+.+....+|.+|+--. .+...+ ...+.++......|+
T Consensus 3 ~~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~~~~~pi 80 (239)
T PRK09468 3 QENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLM--LPGEDGLSICRRLRSQNNPTPI 80 (239)
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCE
Confidence 34568999987666666788888888988765432111111223346898887322 122222 234445543356899
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-++-
T Consensus 81 i~ls~ 85 (239)
T PRK09468 81 IMLTA 85 (239)
T ss_pred EEEEC
Confidence 88864
No 178
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=89.44 E-value=3.5 Score=35.42 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=46.9
Q ss_pred CCeEEEEECCCCc-----hHHHHHHHH-hCCCeEEEEeCCCC----------------CHHHH--ccCCCCEEEECCCCC
Q 032797 24 KNPIIVIDNYDSF-----TYNLCQYMG-ELGYHFEVYRNDEL----------------TVEEL--KRKNPRGVLISPGPG 79 (133)
Q Consensus 24 ~~~i~vid~~~~~-----~~~i~~~l~-~~G~~~~v~~~~~~----------------~~~~l--~~~~~DgvIl~GG~~ 79 (133)
..+|+|+-+...- ...+.++|+ ..|+++.+.+.... +..++ ....+|.+|..||-|
T Consensus 194 p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDG 273 (508)
T PLN02935 194 PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDG 273 (508)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcH
Confidence 5578888654331 234667787 47887766432100 00111 012589999999944
Q ss_pred CcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797 80 APQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 80 ~~~d~~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
.++...+.+ ..++|||||=.|.
T Consensus 274 ------TlL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 274 ------TVLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred ------HHHHHHHHhccCCCcEEEEeCCC
Confidence 455666665 5679999999873
No 179
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=89.01 E-value=2.7 Score=30.42 Aligned_cols=79 Identities=11% Similarity=0.209 Sum_probs=45.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
|+|++++........+...|+..|+.+............+....+|.+++--. .|...+ ...+.++......|++-+
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47899987666666788888888987764432111112233347898887322 222222 233444443456898887
Q ss_pred ec
Q 032797 104 CM 105 (133)
Q Consensus 104 Cl 105 (133)
.-
T Consensus 79 s~ 80 (223)
T PRK10816 79 TA 80 (223)
T ss_pred Ec
Confidence 54
No 180
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=88.93 E-value=1.5 Score=30.32 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=29.1
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----cc--CCCCEEEECCCCC
Q 032797 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG 79 (133)
Q Consensus 34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~--~~~DgvIl~GG~~ 79 (133)
|++...+.+++++.|+++.....-..+.+++ .. .++|.||.+||-+
T Consensus 18 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g 69 (133)
T cd00758 18 DTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG 69 (133)
T ss_pred EchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 3556678888999999876543211122222 11 2599999999965
No 181
>PLN02727 NAD kinase
Probab=88.72 E-value=3.3 Score=38.08 Aligned_cols=79 Identities=11% Similarity=0.170 Sum_probs=49.1
Q ss_pred CCCCeEEEEECCCCch----HHHHHHHHhC-CCeEEEEeCCCC-----------------CHHHHccCCCCEEEECCCCC
Q 032797 22 NNKNPIIVIDNYDSFT----YNLCQYMGEL-GYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPG 79 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~----~~i~~~l~~~-G~~~~v~~~~~~-----------------~~~~l~~~~~DgvIl~GG~~ 79 (133)
.+..+|+||-...... ..+.++|.+. |+++.+-+.... ..+++. ..+|.+|..||-|
T Consensus 676 ~p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGGDG 754 (986)
T PLN02727 676 STPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGGDG 754 (986)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcc-cCCCEEEEECCcH
Confidence 4456888886543321 2367788876 887765432100 001111 2589999999844
Q ss_pred CcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797 80 APQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 80 ~~~d~~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
.++...+.+ ..++|||||=+|.
T Consensus 755 ------TlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 755 ------VILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred ------HHHHHHHHhcCCCCCEEEEeCCC
Confidence 455666665 5689999999885
No 182
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.57 E-value=3.1 Score=32.76 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=40.9
Q ss_pred CeEEEEECCCC-ch----HHHHHHHHhCCCeEEEEeCCCCCHH----HHccCCCCEEEECCCCCCcCCchHHHHHHHHhC
Q 032797 25 NPIIVIDNYDS-FT----YNLCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAPQDSGISLQTVLELG 95 (133)
Q Consensus 25 ~~i~vid~~~~-~~----~~i~~~l~~~G~~~~v~~~~~~~~~----~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~ 95 (133)
|+|.++-+.+. .. ..+.++| +.|+++.+......... +....++|.+|.-||-|+ ++...+.+.
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT------~L~a~~~~~ 73 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDGT------ILRTLQRAK 73 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcHH------HHHHHHHcC
Confidence 56888755433 22 2355566 46877765322100000 111126899999999553 444444443
Q ss_pred CCCCEEEEech
Q 032797 96 PTVPLFGVCMG 106 (133)
Q Consensus 96 ~~~PvLGIClG 106 (133)
.|+|||=.|
T Consensus 74 --~PilGIN~G 82 (271)
T PRK01185 74 --GPILGINMG 82 (271)
T ss_pred --CCEEEEECC
Confidence 699999998
No 183
>CHL00148 orf27 Ycf27; Reviewed
Probab=88.52 E-value=4 Score=29.65 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=46.7
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~P 99 (133)
..+.++|+++|........+.+.|+..|+.+............+....+|.+++--.. +...+ ...+.++.. ...|
T Consensus 3 ~~~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~~d~illd~~~--~~~~g~~~~~~l~~~-~~~~ 79 (240)
T CHL00148 3 ENSKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMM--PKLDGYGVCQEIRKE-SDVP 79 (240)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHhc-CCCc
Confidence 4456799999986666667888888888776533221001122333468988873321 22222 233444442 4688
Q ss_pred EEEEec
Q 032797 100 LFGVCM 105 (133)
Q Consensus 100 vLGICl 105 (133)
++.++-
T Consensus 80 ii~ls~ 85 (240)
T CHL00148 80 IIMLTA 85 (240)
T ss_pred EEEEEC
Confidence 888763
No 184
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=88.21 E-value=4.6 Score=31.36 Aligned_cols=54 Identities=17% Similarity=0.064 Sum_probs=35.4
Q ss_pred CCCCeEEEEECCCCc--------hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEEC
Q 032797 22 NNKNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (133)
Q Consensus 22 ~~~~~i~vid~~~~~--------~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~ 75 (133)
.+.++|+|+-.+++- ...+.++|++.|++++++..+......+...++|.++..
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA 63 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence 455688888533322 235788999999999988765333333334479988875
No 185
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=88.18 E-value=2 Score=32.00 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=41.9
Q ss_pred HHHHHH-hCCCeEEEEeC-CCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEechH-------HH
Q 032797 40 LCQYMG-ELGYHFEVYRN-DELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL-------QC 109 (133)
Q Consensus 40 i~~~l~-~~G~~~~v~~~-~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIClG~-------Ql 109 (133)
+.+.|+ ..++++++... +..+.+.+ .+||.||+....++..+.. ..+.+++ ++++.+++||..++ .-
T Consensus 24 l~~ll~~~~~~~v~~~~~~~~~~~~~L--~~~Dvvv~~~~~~~~l~~~-~~~al~~~v~~Ggglv~lH~~~~~~~~~~~~ 100 (217)
T PF06283_consen 24 LAQLLEESEGFEVTVTEDPDDLTPENL--KGYDVVVFYNTGGDELTDE-QRAALRDYVENGGGLVGLHGAATDSFPDWPE 100 (217)
T ss_dssp HHHHHHHTTCEEEEECCSGGCTSHHCH--CT-SEEEEE-SSCCGS-HH-HHHHHHHHHHTT-EEEEEGGGGGCCHTT-HH
T ss_pred HHHHhccCCCEEEEEEeCcccCChhHh--cCCCEEEEECCCCCcCCHH-HHHHHHHHHHcCCCEEEEcccccccchhHHH
Confidence 455566 46777776542 11233344 3899999877654332233 3344544 58899999998444 23
Q ss_pred HHHHhCCeeee
Q 032797 110 IGEAFGDCAFS 120 (133)
Q Consensus 110 La~a~GG~v~~ 120 (133)
....+||....
T Consensus 101 ~~~l~Gg~f~~ 111 (217)
T PF06283_consen 101 YNELLGGYFKG 111 (217)
T ss_dssp HHHHHS--SEE
T ss_pred HHHeeCccccC
Confidence 55577776543
No 186
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=87.94 E-value=3.2 Score=29.20 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----c--cCCCCEEEECCCCC
Q 032797 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG 79 (133)
Q Consensus 34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~--~~~~DgvIl~GG~~ 79 (133)
|++...+.+.|++.|+++.....-..+.+++ . ..++|.||.+||.+
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g 77 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG 77 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 3566678889999999877543211122222 1 13799999999965
No 187
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=87.75 E-value=3.6 Score=29.99 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=28.5
Q ss_pred CCchHHHHHHHHhCCCeEEEEe--CCCCC--HHHHc--cCCCCEEEECCCCC
Q 032797 34 DSFTYNLCQYMGELGYHFEVYR--NDELT--VEELK--RKNPRGVLISPGPG 79 (133)
Q Consensus 34 ~~~~~~i~~~l~~~G~~~~v~~--~~~~~--~~~l~--~~~~DgvIl~GG~~ 79 (133)
|++...+.+.|++.|+++.... .|+.. .+.+. ...+|.||.+||-+
T Consensus 18 d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G 69 (170)
T cd00885 18 DTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG 69 (170)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 3455678889999999875432 22111 11121 13789999999965
No 188
>PRK05568 flavodoxin; Provisional
Probab=87.75 E-value=7 Score=26.82 Aligned_cols=77 Identities=17% Similarity=0.119 Sum_probs=43.9
Q ss_pred eEEEE-ECCCCchHHHHHHH----HhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC---chHHHHHHHHh---
Q 032797 26 PIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---SGISLQTVLEL--- 94 (133)
Q Consensus 26 ~i~vi-d~~~~~~~~i~~~l----~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d---~~~~~~~i~~~--- 94 (133)
+++|+ ....+++..+.+.+ ++.|.++++++..+.+..++. ++|+|++ |.|---.. ...+..++.++
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsp~y~~~~~~~~~~~~f~~~~~~~ 79 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVK--GADVVAL-GSPAMGDEVLEEGEMEPFVESISSL 79 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHH--hCCEEEE-ECCccCcccccchhHHHHHHHhhhh
Confidence 34444 55556777665554 456888888876544455554 7999998 55431111 12344444442
Q ss_pred CCCCCEEEEec
Q 032797 95 GPTVPLFGVCM 105 (133)
Q Consensus 95 ~~~~PvLGICl 105 (133)
..++++.-+|-
T Consensus 80 ~~~k~~~~f~t 90 (142)
T PRK05568 80 VKGKKLVLFGS 90 (142)
T ss_pred hCCCEEEEEEc
Confidence 25667666654
No 189
>PRK01215 competence damage-inducible protein A; Provisional
Probab=87.62 E-value=4.8 Score=31.53 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=27.7
Q ss_pred CchHHHHHHHHhCCCeEEEEe--CCCCCHHHHc------cCCCCEEEECCCCC
Q 032797 35 SFTYNLCQYMGELGYHFEVYR--NDELTVEELK------RKNPRGVLISPGPG 79 (133)
Q Consensus 35 ~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l~------~~~~DgvIl~GG~~ 79 (133)
.+...+.+.|++.|+++.... .| +.+++. ..++|.||++||-+
T Consensus 23 tn~~~l~~~L~~~G~~v~~~~~v~D--d~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 23 TNASWIARRLTYLGYTVRRITVVMD--DIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred hhHHHHHHHHHHCCCeEEEEEEeCC--CHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 445568888999999875432 22 222221 13689999999965
No 190
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=87.11 E-value=4.3 Score=28.95 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=44.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
|+|+++|........+...|+..|+++............+....+|.+++--.. +...+ ...+.++......|++.+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL--PGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEECCC--CCCCHHHHHHHHHhcCCCCcEEEE
Confidence 478999876566667888888888876544321111122333468988874321 11122 234445544456788887
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
.
T Consensus 79 t 79 (219)
T PRK10336 79 T 79 (219)
T ss_pred E
Confidence 5
No 191
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=86.47 E-value=6.5 Score=32.84 Aligned_cols=58 Identities=16% Similarity=0.028 Sum_probs=35.3
Q ss_pred CCCCeEEEEECC----------------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----cc--CCCCEEEECCCCC
Q 032797 22 NNKNPIIVIDNY----------------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG 79 (133)
Q Consensus 22 ~~~~~i~vid~~----------------~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~--~~~DgvIl~GG~~ 79 (133)
...+||.|+..+ |++...+...+++.|+++.....-..+.+.+ .. .++|.||++||.+
T Consensus 191 ~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S 270 (419)
T PRK14690 191 RRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS 270 (419)
T ss_pred ecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence 345678877443 2344467788999999876443211122222 11 3699999999854
No 192
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=86.36 E-value=6.3 Score=28.22 Aligned_cols=80 Identities=18% Similarity=0.378 Sum_probs=45.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
.++|+++|........+...|+..|+.+............+....+|.+++--. .+...+ ...+.++......|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~--~~~~~g~~~~~~l~~~~~~~~ii~ 80 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVG--LPDISGFELCRQLLAFHPALPVIF 80 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCCEEE
Confidence 358999987656666778888888887654332111112233346898887322 122222 23344544445688887
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
+.-
T Consensus 81 ls~ 83 (228)
T PRK11083 81 LTA 83 (228)
T ss_pred EEc
Confidence 753
No 193
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=86.09 E-value=4.9 Score=29.09 Aligned_cols=78 Identities=9% Similarity=0.112 Sum_probs=44.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
|+|++++........+...|+..|+.+..........+.+....+|.+++--. .+...+ ...+.+++...+.|++-+
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIM--LPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47899988666666788888888886654432111112223346898887322 122222 233445443456888776
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
-
T Consensus 79 s 79 (227)
T PRK09836 79 T 79 (227)
T ss_pred E
Confidence 3
No 194
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=86.01 E-value=1.9 Score=33.84 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=27.0
Q ss_pred cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797 66 RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 66 ~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
..++|.+|..|| ++..+...+.+ ..++|++||=.|.
T Consensus 74 ~~~~D~ii~lGG------DGT~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGG------DGTFLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEES------HHHHHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECC------CHHHHHHHHHhccCCCcEEeecCCC
Confidence 358999999998 44566667776 4599999998874
No 195
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=85.73 E-value=4.6 Score=34.61 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=55.1
Q ss_pred cccCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC-----CcC-CchHH-HH
Q 032797 18 KKSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-----APQ-DSGIS-LQ 89 (133)
Q Consensus 18 ~~~~~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-----~~~-d~~~~-~~ 89 (133)
++.....+||+|+|.+..+. +...+.|.+.|+++..+-... ...+. ...+-|+| |+.. ..+ ..+.. +.
T Consensus 379 A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a--~syim-~evtkvfL-GahailsNG~vysR~GTa~va 454 (556)
T KOG1467|consen 379 AKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINA--ASYIM-LEVTKVFL-GAHAILSNGAVYSRVGTACVA 454 (556)
T ss_pred HHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehh--HHHHH-Hhcceeee-chhhhhcCcchhhhcchHHHH
Confidence 57778899999999988775 457888999999988765432 22332 25666666 4421 122 22221 22
Q ss_pred HHHHhCCCCCEEEEechHHH
Q 032797 90 TVLELGPTVPLFGVCMGLQC 109 (133)
Q Consensus 90 ~i~~~~~~~PvLGIClG~Ql 109 (133)
++. -..++|||-.|--+-.
T Consensus 455 lvA-na~nVPVlVCCE~yKF 473 (556)
T KOG1467|consen 455 LVA-NAFNVPVLVCCEAYKF 473 (556)
T ss_pred HHh-cccCCCEEEEechhhh
Confidence 222 2467999999976543
No 196
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=85.06 E-value=13 Score=27.43 Aligned_cols=94 Identities=13% Similarity=-0.020 Sum_probs=49.0
Q ss_pred CeEEEE-ECCCCchHHHHHH----HHhC-CCeEEEEeCCCCC--------------------HHHHccCCCCEEEECCCC
Q 032797 25 NPIIVI-DNYDSFTYNLCQY----MGEL-GYHFEVYRNDELT--------------------VEELKRKNPRGVLISPGP 78 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~~----l~~~-G~~~~v~~~~~~~--------------------~~~l~~~~~DgvIl~GG~ 78 (133)
++|+|| ....+.+..+.+. +++. |+++++++..+.. .+++ .++|+||+ |+|
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~-GSP 77 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQEL--ADYDAIIF-GTP 77 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHH--HHCCEEEE-Eec
Confidence 367666 3333556555554 4444 8888887653211 1233 27999999 554
Q ss_pred CCcC-CchHHHHHHHHh--------CCCCCEEEEec-----hHH------HHH--HHhCCeeeec
Q 032797 79 GAPQ-DSGISLQTVLEL--------GPTVPLFGVCM-----GLQ------CIG--EAFGDCAFSA 121 (133)
Q Consensus 79 ~~~~-d~~~~~~~i~~~--------~~~~PvLGICl-----G~Q------lLa--~a~GG~v~~~ 121 (133)
--.. -...+..++... -.++|+..++- |-| ++. ...|..+...
T Consensus 78 ty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~ 142 (197)
T TIGR01755 78 TRFGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPL 142 (197)
T ss_pred ccccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCC
Confidence 3111 122334444432 13677766664 222 222 5678887754
No 197
>PRK03673 hypothetical protein; Provisional
Probab=84.61 E-value=6.4 Score=32.70 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=29.0
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHHc------cCCCCEEEECCCCC
Q 032797 35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG 79 (133)
Q Consensus 35 ~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~ 79 (133)
++...+.+.|++.|+++.....-..+.+.+. ...+|.||++||-|
T Consensus 21 tN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4555688889999998754432111233321 13699999999966
No 198
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=84.34 E-value=3.8 Score=34.14 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=43.4
Q ss_pred CCCCeEEEEEC----------------CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----c--cCCCCEEEECCCCC
Q 032797 22 NNKNPIIVIDN----------------YDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG 79 (133)
Q Consensus 22 ~~~~~i~vid~----------------~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~--~~~~DgvIl~GG~~ 79 (133)
...+||.||.. +|++...+...+++.|+++.....-..+.+.+ . ...+|.||.+||.
T Consensus 174 ~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~- 252 (404)
T COG0303 174 YRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGV- 252 (404)
T ss_pred ecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCc-
Confidence 44567888843 23555568888999999876553211122222 1 1369999999995
Q ss_pred CcCCchHHHHHHH
Q 032797 80 APQDSGISLQTVL 92 (133)
Q Consensus 80 ~~~d~~~~~~~i~ 92 (133)
++.+.+...+.++
T Consensus 253 SvG~~D~v~~~l~ 265 (404)
T COG0303 253 SVGDADYVKAALE 265 (404)
T ss_pred cCcchHhHHHHHH
Confidence 4555555555665
No 199
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=84.29 E-value=6.2 Score=32.92 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=28.8
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----c--cCCCCEEEECCCCC
Q 032797 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG 79 (133)
Q Consensus 34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~--~~~~DgvIl~GG~~ 79 (133)
|++...+.+.|++.|+++.....-..+.+++ . ..++|.||++||-+
T Consensus 19 dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 19 NTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred EchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 3455678889999999876432110122222 1 13799999999965
No 200
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=84.19 E-value=7.5 Score=28.15 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=44.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHh--CCCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~--~~~~Pv 100 (133)
.++|+++|........+...|+..|+++..........+.+....+|.+++--.. +... -...+.++.. ....|+
T Consensus 2 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEeCCC--CCCCHHHHHHHHHhccccCCCCE
Confidence 4689999876666667888888888877643321111122333468988883321 1112 2234445442 246788
Q ss_pred EEEe
Q 032797 101 FGVC 104 (133)
Q Consensus 101 LGIC 104 (133)
+-+.
T Consensus 80 i~ls 83 (229)
T PRK10161 80 VMLT 83 (229)
T ss_pred EEEE
Confidence 8775
No 201
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=83.83 E-value=7.1 Score=28.01 Aligned_cols=72 Identities=13% Similarity=0.026 Sum_probs=45.2
Q ss_pred CCCCeEEEEEC----CCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc----cCCCCEEEECCCCCCcC-CchHHHHHHH
Q 032797 22 NNKNPIIVIDN----YDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQTVL 92 (133)
Q Consensus 22 ~~~~~i~vid~----~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~~~~DgvIl~GG~~~~~-d~~~~~~~i~ 92 (133)
...+||++.-. .+--..-+.+.|++.|+++...... .+.++.- ..+.|.|.+|+=.+.-. ....+.+.++
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHH
Confidence 45678877733 3333445778999999999876554 3444432 35899999987544322 2334566677
Q ss_pred Hh
Q 032797 93 EL 94 (133)
Q Consensus 93 ~~ 94 (133)
+.
T Consensus 89 e~ 90 (143)
T COG2185 89 EA 90 (143)
T ss_pred Hh
Confidence 65
No 202
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=83.80 E-value=12 Score=27.59 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCeE---EEEeCCCCCH-HHH---ccCCCCEEEECCCCC-CcCCc
Q 032797 38 YNLCQYMGELGYHF---EVYRNDELTV-EEL---KRKNPRGVLISPGPG-APQDS 84 (133)
Q Consensus 38 ~~i~~~l~~~G~~~---~v~~~~~~~~-~~l---~~~~~DgvIl~GG~~-~~~d~ 84 (133)
..+.++|++.|.++ .+++.+.... ..+ -...+|.|+.+||-| ++.|.
T Consensus 30 ~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDv 84 (169)
T COG0521 30 PLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDV 84 (169)
T ss_pred hHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcC
Confidence 35788999998876 3444321111 111 112389999999988 56654
No 203
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=83.75 E-value=3.2 Score=26.83 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=30.6
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCC
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~ 80 (133)
||+|=+ +. ..+.++|++.|++++-.... .++ ..+|++|++|-..+
T Consensus 3 kIAVE~---~L-s~v~~~L~~~GyeVv~l~~~----~~~--~~~daiVvtG~~~n 47 (80)
T PF03698_consen 3 KIAVEE---GL-SNVKEALREKGYEVVDLENE----QDL--QNVDAIVVTGQDTN 47 (80)
T ss_pred eEEecC---Cc-hHHHHHHHHCCCEEEecCCc----ccc--CCcCEEEEECCCcc
Confidence 555544 33 36889999999988754422 223 37999999997553
No 204
>PRK06242 flavodoxin; Provisional
Probab=83.71 E-value=7.8 Score=26.79 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=39.4
Q ss_pred CeEEEE-ECC-CCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHh-C-CCC
Q 032797 25 NPIIVI-DNY-DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL-G-PTV 98 (133)
Q Consensus 25 ~~i~vi-d~~-~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~-~-~~~ 98 (133)
|+++|+ ... .+.+..+.+.+.+ .+.+ +++......+++ .++|.||+ |+|---. -...+.+++.++ . .++
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~--~~~i~~~~~~~~--~~~d~ii~-g~pvy~~~~~~~~~~fl~~~~~~~~k 75 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLDAE--VIDPGDVNPEDL--SEYDLIGF-GSGIYFGKFHKSLLKLIEKLPPVSGK 75 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcCcE--EecHHHCCcccH--hHCCEEEE-eCchhcCCcCHHHHHHHHhhhhhcCC
Confidence 456655 333 4678888888765 4543 333321222333 37999999 5542111 123345566553 2 466
Q ss_pred CEEEEe
Q 032797 99 PLFGVC 104 (133)
Q Consensus 99 PvLGIC 104 (133)
|+.-+|
T Consensus 76 ~~~~f~ 81 (150)
T PRK06242 76 KAFIFS 81 (150)
T ss_pred eEEEEE
Confidence 766553
No 205
>PRK13435 response regulator; Provisional
Probab=83.27 E-value=7.5 Score=26.22 Aligned_cols=87 Identities=8% Similarity=0.010 Sum_probs=47.1
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH-HHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV-EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~-~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~P 99 (133)
|...++|++++........+.+.+...|+.+.....+.... +.+....+|.+|+--......+.-...+.++. ...+|
T Consensus 2 ~~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~-~~~~p 80 (145)
T PRK13435 2 FLRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSA-DGGVE 80 (145)
T ss_pred CcccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHh-CCCCC
Confidence 45568899998865666667888887787654222221111 11222368988883221100111122333333 24689
Q ss_pred EEEEechHH
Q 032797 100 LFGVCMGLQ 108 (133)
Q Consensus 100 vLGIClG~Q 108 (133)
++.+.--.+
T Consensus 81 ii~ls~~~~ 89 (145)
T PRK13435 81 VVFMTGNPE 89 (145)
T ss_pred EEEEeCCHH
Confidence 998876554
No 206
>PRK15029 arginine decarboxylase; Provisional
Probab=82.57 E-value=7.2 Score=35.11 Aligned_cols=78 Identities=9% Similarity=0.027 Sum_probs=45.9
Q ss_pred CeEEEEECCCC--------chHHHHHHHHhCCCeEEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcCCch-----HHHHH
Q 032797 25 NPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-----ISLQT 90 (133)
Q Consensus 25 ~~i~vid~~~~--------~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~d~~-----~~~~~ 90 (133)
|||++||-... ....+.+.|++.|+++............+.. ..+|.+|+-=. -|...+ .+.+.
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~--LPd~dG~~~~~ell~~ 78 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK 78 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECC--CCCCccchhHHHHHHH
Confidence 47999975432 2556788899999998866532111222333 37999998311 122112 34455
Q ss_pred HHHhCCCCCEEEEe
Q 032797 91 VLELGPTVPLFGVC 104 (133)
Q Consensus 91 i~~~~~~~PvLGIC 104 (133)
||+...++||+-+.
T Consensus 79 IR~~~~~iPIIlLT 92 (755)
T PRK15029 79 LHERQQNVPVFLLG 92 (755)
T ss_pred HHhhCCCCCEEEEE
Confidence 55544579998875
No 207
>PRK00549 competence damage-inducible protein A; Provisional
Probab=82.51 E-value=10 Score=31.60 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=28.7
Q ss_pred CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----c--cCCCCEEEECCCCC
Q 032797 34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RKNPRGVLISPGPG 79 (133)
Q Consensus 34 ~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l----~--~~~~DgvIl~GG~~ 79 (133)
|.+...+.+.|++.|+++.... .| +.+.+ . ..++|.||++||-|
T Consensus 19 DtN~~~L~~~L~~~G~~v~~~~~v~D--d~~~I~~~l~~a~~~~DlVItTGGlG 70 (414)
T PRK00549 19 NTNAQFLSEKLAELGIDVYHQTVVGD--NPERLLSALEIAEERSDLIITTGGLG 70 (414)
T ss_pred EhhHHHHHHHHHHCCCeEEEEEEeCC--CHHHHHHHHHHhccCCCEEEECCCCC
Confidence 3455568889999999775432 22 22222 1 14799999999965
No 208
>PRK12359 flavodoxin FldB; Provisional
Probab=82.46 E-value=12 Score=27.32 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=32.7
Q ss_pred CeEEEE-ECCCCchHHHHHHHHh-CCCe-EEEEeCCCCCHHHHccCCCCEEEECCCC
Q 032797 25 NPIIVI-DNYDSFTYNLCQYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGP 78 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~~l~~-~G~~-~~v~~~~~~~~~~l~~~~~DgvIl~GG~ 78 (133)
|++.|+ -...+.+..+.+.+.+ .|.+ +++.+....+.+++. +||.+|+ |.|
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~~~v~v~~i~~~~~~~l~--~yD~iIl-G~p 54 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLME--QYDVLIL-GIP 54 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEcccCChhHHc--cCCEEEE-Eec
Confidence 566665 4455678888888765 4553 566665444455554 7998888 544
No 209
>PRK09271 flavodoxin; Provisional
Probab=82.44 E-value=15 Score=26.07 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=29.1
Q ss_pred CeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHH--ccCCCCEEEECCCC
Q 032797 25 NPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGP 78 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~----~~l~~~G~~~~v~~~~~~~~~~l--~~~~~DgvIl~GG~ 78 (133)
|+|+|+ ....+.+..+. +.|+..|.++.+.........++ ...++|.++| |.|
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vil-gt~ 60 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLL-GTW 60 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEE-ECc
Confidence 466665 43445555544 45566788887665432222221 1136899998 443
No 210
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=82.29 E-value=8.3 Score=31.51 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=49.1
Q ss_pred CCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCEEEEechHHH
Q 032797 32 NYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFGVCMGLQC 109 (133)
Q Consensus 32 ~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~--~~~~PvLGIClG~Ql 109 (133)
..+.|.+.+.+++++.|+..++......+.+. +-.-.+...|- -.|.....+.+++. .+..-..|+-+|.-+
T Consensus 88 s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~----n~~p~~yh~G~--t~D~~~~l~~l~~~~~~r~~~avG~SLGgnm 161 (345)
T COG0429 88 SNSPYARGLMRALSRRGWLVVVFHFRGCSGEA----NTSPRLYHSGE--TEDIRFFLDWLKARFPPRPLYAVGFSLGGNM 161 (345)
T ss_pred CcCHHHHHHHHHHHhcCCeEEEEecccccCCc----ccCcceecccc--hhHHHHHHHHHHHhCCCCceEEEEecccHHH
Confidence 34456667888899999999888764322111 11223333432 12333345566553 566677899999999
Q ss_pred HHHHhCCe
Q 032797 110 IGEAFGDC 117 (133)
Q Consensus 110 La~a~GG~ 117 (133)
|+..+|-+
T Consensus 162 La~ylgee 169 (345)
T COG0429 162 LANYLGEE 169 (345)
T ss_pred HHHHHHhh
Confidence 99988754
No 211
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=82.26 E-value=8.6 Score=27.37 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=43.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
++|+++|....+...+...|+..|+.+..........+.+....+|.+++--. .+...+ ...+.++......|++-+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~illd~~--~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLG--LPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 47899987666666788888888887654432111112232346898777322 122222 233444443356788776
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
.
T Consensus 79 s 79 (222)
T PRK10643 79 T 79 (222)
T ss_pred E
Confidence 4
No 212
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=82.25 E-value=3.2 Score=21.02 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=28.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl 74 (133)
+++++++........+.+.++..|+.+...+........+....+|.+++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 50 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILL 50 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 36778876555556677778778877554332111112232235787776
No 213
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=82.17 E-value=19 Score=29.00 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=36.6
Q ss_pred cCCCCCeEEEEECC---------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH-------ccCCCCEEEECCCCC
Q 032797 20 SKNNKNPIIVIDNY---------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL-------KRKNPRGVLISPGPG 79 (133)
Q Consensus 20 ~~~~~~~i~vid~~---------~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l-------~~~~~DgvIl~GG~~ 79 (133)
.+...+|+.||..+ |++...+...|++.|+++.....-..+.+.+ ...++|.||++||.+
T Consensus 155 ~v~r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 155 APFRPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred EecCCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 34566788888543 3344567788999999876443211122222 122489999999965
No 214
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=81.97 E-value=7.1 Score=28.80 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
.+.+++++.|+++.+........ +.+...++||+|+.+.. .... ..+...+++|+..++
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~----~~~~---~~~~~~~~ipvv~~~ 84 (267)
T cd06284 20 GIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGS----LPPT---ALTALAKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCC----CCHH---HHHHHhcCCCEEEEe
Confidence 35667778899988776532111 11223479999996542 1111 122234478888764
No 215
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=81.90 E-value=6.7 Score=31.04 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=42.1
Q ss_pred CCCCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHH
Q 032797 22 NNKNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISL 88 (133)
Q Consensus 22 ~~~~~i~vi--d~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~ 88 (133)
....+|.++ +..+.|-. .+.+++++.|+.+.+...+. +.+ .+...++||+|+.+.. .....
T Consensus 23 ~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~-~~~~~~~~i~~l~~~~vDGiIi~~~~-----~~~~~ 96 (330)
T PRK10355 23 AKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANG-NEETQMSQIENMINRGVDVLVIIPYN-----GQVLS 96 (330)
T ss_pred CCCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEeCCC-----hhhHH
Confidence 345677666 23334433 35566777899998876532 221 2223589999997632 11111
Q ss_pred HHHHHh-CCCCCEEEE
Q 032797 89 QTVLEL-GPTVPLFGV 103 (133)
Q Consensus 89 ~~i~~~-~~~~PvLGI 103 (133)
+.+..+ +.++|++-+
T Consensus 97 ~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 97 NVIKEAKQEGIKVLAY 112 (330)
T ss_pred HHHHHHHHCCCeEEEE
Confidence 233333 456777766
No 216
>PRK09267 flavodoxin FldA; Validated
Probab=81.83 E-value=16 Score=25.95 Aligned_cols=79 Identities=10% Similarity=-0.001 Sum_probs=42.0
Q ss_pred CeEEEE-ECCCCchHHHHHHHHh-C-CCeEEEEeCCCCCHHHHccCCCCEEEECCCCC-CcCC-chHHHHHHHH---h-C
Q 032797 25 NPIIVI-DNYDSFTYNLCQYMGE-L-GYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQD-SGISLQTVLE---L-G 95 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~~l~~-~-G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-~~~d-~~~~~~~i~~---~-~ 95 (133)
|+|+|+ ....+.+..+.+.+.+ . +.++++.+..+.+..++. ++|.||+ |.|- .... ...+.+++.. . -
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~~~~l~--~~d~vi~-g~pt~~~G~~~~~~~~fl~~~~~~~l 78 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFE--AYDLLIL-GIPTWGYGELQCDWDDFLPELEEIDF 78 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCCHhhHh--hCCEEEE-EecCcCCCCCCHHHHHHHHHHhcCCC
Confidence 467666 4455677777777655 2 234566655433344454 7999988 4332 1111 1223334443 2 2
Q ss_pred CCCCEEEEech
Q 032797 96 PTVPLFGVCMG 106 (133)
Q Consensus 96 ~~~PvLGIClG 106 (133)
.++|+.-+..|
T Consensus 79 ~~k~vaifg~g 89 (169)
T PRK09267 79 SGKKVALFGLG 89 (169)
T ss_pred CCCEEEEEecC
Confidence 46777666654
No 217
>PRK03670 competence damage-inducible protein A; Provisional
Probab=81.68 E-value=13 Score=28.99 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=27.8
Q ss_pred CchHHHHHHHHhCCCeEEEEeC--CCCC--HHHHc---cCCCCEEEECCCCC
Q 032797 35 SFTYNLCQYMGELGYHFEVYRN--DELT--VEELK---RKNPRGVLISPGPG 79 (133)
Q Consensus 35 ~~~~~i~~~l~~~G~~~~v~~~--~~~~--~~~l~---~~~~DgvIl~GG~~ 79 (133)
.+...+.+.|++.|+++..+.. |+.. .+.+. ...+|.||++||-|
T Consensus 20 tN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 4455688889999998764432 2111 11121 22589999999966
No 218
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=81.61 E-value=11 Score=28.00 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=34.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
.+.+.+++.|+.+.+...+... .+.+....+||+|+.+.. +.+.....+.+.++ ..++|+.-+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 20 AIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSL--HADTHADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCC--CCcccchhHHHHHHHhCCCCEEEE
Confidence 4566777789998876643111 112334589999997632 22222122334433 456777665
No 219
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=81.46 E-value=7 Score=29.23 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=27.2
Q ss_pred CchHHHHHHHHhCCCe---E--EEEeCCCCCH-HHH---cc-CCCCEEEECCCCC-CcCCc
Q 032797 35 SFTYNLCQYMGELGYH---F--EVYRNDELTV-EEL---KR-KNPRGVLISPGPG-APQDS 84 (133)
Q Consensus 35 ~~~~~i~~~l~~~G~~---~--~v~~~~~~~~-~~l---~~-~~~DgvIl~GG~~-~~~d~ 84 (133)
.....+.+.|++.|++ + .+++.+.... +.+ .. .++|.||.+||-+ ++.|.
T Consensus 23 ~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDv 83 (193)
T PRK09417 23 KGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDV 83 (193)
T ss_pred chHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCc
Confidence 3445678889888643 2 2333221111 112 11 2699999999976 44443
No 220
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.24 E-value=12 Score=29.35 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=41.7
Q ss_pred eEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-C-CCCC
Q 032797 26 PIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G-PTVP 99 (133)
Q Consensus 26 ~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~-~~~P 99 (133)
++.++-+...... .+.++|++.|+++..- . .++|.+|.-||-| .++...+.+ . .++|
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~---------~--~~~D~vi~lGGDG------T~L~a~~~~~~~~~~p 66 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH---------P--KNANIIVSIGGDG------TFLQAVRKTGFREDCL 66 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC---------C--CCccEEEEECCcH------HHHHHHHHhcccCCCe
Confidence 6777766444222 2556788888866521 1 2579999999844 355666664 3 3789
Q ss_pred EEEEec-h
Q 032797 100 LFGVCM-G 106 (133)
Q Consensus 100 vLGICl-G 106 (133)
++||=. |
T Consensus 67 ilgIn~~G 74 (264)
T PRK03501 67 YAGISTKD 74 (264)
T ss_pred EEeEecCC
Confidence 999999 6
No 221
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=80.70 E-value=7.8 Score=28.82 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=23.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+++.+.... .+.+ .+...++||+|+.++
T Consensus 21 i~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 21 TKAEAEALGGDLRVYDAG-GDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 556777889998887542 2221 122347999999653
No 222
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=80.62 E-value=15 Score=26.37 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
.++|++++........+...|+..|+.+............+....+|.+++.-. .|...+ ...+.++.. ...|++.
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~-~~~~ii~ 78 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDIN--LPGEDGLMLTRELRSR-STVGIIL 78 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhC-CCCCEEE
Confidence 468999987656666677888888887654432111112233346898888432 122222 233444442 4578877
Q ss_pred Ee
Q 032797 103 VC 104 (133)
Q Consensus 103 IC 104 (133)
+.
T Consensus 79 l~ 80 (221)
T PRK10766 79 VT 80 (221)
T ss_pred EE
Confidence 64
No 223
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=80.51 E-value=20 Score=26.33 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=19.4
Q ss_pred CeEEEEEC-CCCchHHHHH----HHHh-CCCeEEEEeC
Q 032797 25 NPIIVIDN-YDSFTYNLCQ----YMGE-LGYHFEVYRN 56 (133)
Q Consensus 25 ~~i~vid~-~~~~~~~i~~----~l~~-~G~~~~v~~~ 56 (133)
++|+||-+ ..+.+..+.+ .+++ .|+++++++.
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 47777743 2344554444 4555 7888888765
No 224
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=80.43 E-value=0.34 Score=27.31 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=11.6
Q ss_pred CEEEEechHHHHHHHhC
Q 032797 99 PLFGVCMGLQCIGEAFG 115 (133)
Q Consensus 99 PvLGIClG~QlLa~a~G 115 (133)
-..|-|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 35789999999987755
No 225
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=80.21 E-value=2.8 Score=29.28 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHhCCCeEEE---EeCCCCCHHHHc----c--CCCCEEEECCCCC
Q 032797 34 DSFTYNLCQYMGELGYHFEV---YRNDELTVEELK----R--KNPRGVLISPGPG 79 (133)
Q Consensus 34 ~~~~~~i~~~l~~~G~~~~v---~~~~~~~~~~l~----~--~~~DgvIl~GG~~ 79 (133)
|++...+.++|++.|+++.. ++.+ .+++. . .+.|.||.+||-+
T Consensus 16 d~n~~~l~~~l~~~G~~v~~~~~v~Dd---~~~i~~~l~~~~~~~D~VittGG~g 67 (144)
T PF00994_consen 16 DSNGPFLAALLEELGIEVIRYGIVPDD---PDAIKEALRRALDRADLVITTGGTG 67 (144)
T ss_dssp BHHHHHHHHHHHHTTEEEEEEEEEESS---HHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred EhHHHHHHHHHHHcCCeeeEEEEECCC---HHHHHHHHHhhhccCCEEEEcCCcC
Confidence 34556688899999997753 3332 23221 1 2679999999976
No 226
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=80.20 E-value=15 Score=26.10 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=43.3
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
++|+++|........+.+.+...|+.+............+....+|.+++.-. .+...+ ...+.++......|++-+
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~vild~~--~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEMYALAVLDIN--MPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 47899987666667788888888876654322111111223346898887322 122222 233444444446788776
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
+
T Consensus 79 t 79 (221)
T PRK15479 79 T 79 (221)
T ss_pred E
Confidence 5
No 227
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=80.14 E-value=12 Score=29.41 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=29.5
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHHc------cCCCCEEEECCCCC
Q 032797 35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG 79 (133)
Q Consensus 35 ~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~ 79 (133)
.+...+.+.|.+.|+++.-...-..+.+++. ..++|-||++||-|
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 4555688999999998764432111223221 13699999999976
No 228
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=79.97 E-value=13 Score=26.40 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=44.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv 100 (133)
.++|+++|....+...+...|+..|+.+............+....+|.+++--. -+...+ ...+.++.. ....|+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~vi~d~~--~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWM--LPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcCCCEEEEECC--CCCCcHHHHHHHHHccccCCCCCE
Confidence 467999987666666788888888877653322111112233346898888322 112222 233444432 246788
Q ss_pred EEEe
Q 032797 101 FGVC 104 (133)
Q Consensus 101 LGIC 104 (133)
+-+.
T Consensus 80 i~ls 83 (226)
T TIGR02154 80 IMLT 83 (226)
T ss_pred EEEe
Confidence 8776
No 229
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=79.77 E-value=4.7 Score=31.09 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=34.4
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEechHHHHHHHhCCeee
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
++|++||+ -+++ ...+.+|+.. .+|+.|||-..-..|...|-++.
T Consensus 69 GvdaiiIa-----Cf~D-Pgl~~~Re~~-~~PviGi~eAsv~~A~~vgrrfs 113 (230)
T COG4126 69 GVDAIIIA-----CFSD-PGLAAARERA-AIPVIGICEASVLAALFVGRRFS 113 (230)
T ss_pred CCcEEEEE-----ecCC-hHHHHHHHHh-CCCceehhHHHHHHHHHhcceEE
Confidence 58999993 2333 3457788742 39999999999999999998865
No 230
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=79.20 E-value=14 Score=26.61 Aligned_cols=79 Identities=16% Similarity=0.327 Sum_probs=43.0
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCc-CCchHHHHHHHHhCCCCCEEEEe
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~-~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
+|+++|....+...+...|+..|+++............+....+|.+++--...+. .+.-...+.++......|++-+.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls 81 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLT 81 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 68889876566667888888888876544321111122233468988873321111 01122344454433467887764
No 231
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=79.20 E-value=18 Score=24.91 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=43.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (133)
..+|++++........+.+.+...++.+..........+.+....+|.+++--.. ...+.-...+.++......|++-+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~d~~~-~~~~~~~~~~~l~~~~~~~~ii~l 81 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRM-PGIDGIELLRRLKARGSPLPVIVM 81 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCCCCEEEEeCCC-CCCcHHHHHHHHHhcCCCCCEEEE
Confidence 4678999876555666777888778776543221001112233468887773321 111112234455544456888877
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
.
T Consensus 82 ~ 82 (202)
T PRK09390 82 T 82 (202)
T ss_pred E
Confidence 5
No 232
>PRK03094 hypothetical protein; Provisional
Probab=79.08 E-value=7.1 Score=25.29 Aligned_cols=37 Identities=11% Similarity=0.220 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCC
Q 032797 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~ 80 (133)
..+.++|++.|++++-++.. .+. ..+|++|++|-..+
T Consensus 11 s~i~~~L~~~GYeVv~l~~~----~~~--~~~Da~VitG~d~n 47 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLRSE----QDA--QGCDCCVVTGQDSN 47 (80)
T ss_pred HHHHHHHHHCCCEEEecCcc----ccc--CCcCEEEEeCCCcc
Confidence 35889999999988755431 122 37999999997554
No 233
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=79.08 E-value=7.9 Score=29.97 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=31.5
Q ss_pred CCCEEEECCCCCCcCCch---HHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeee
Q 032797 68 NPRGVLISPGPGAPQDSG---ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~---~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
.-..+|++||..-|+-.. ..-+.|..+ .++--.||||-|. +||+...
T Consensus 49 ~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~-----YFg~~~v 99 (253)
T COG4285 49 TTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG-----YFGSAYV 99 (253)
T ss_pred ceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc-----cccceEE
Confidence 456899999976665321 123455553 7788999999884 6777544
No 234
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=78.96 E-value=25 Score=27.19 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=46.3
Q ss_pred CeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCC-CHHH----HccCCCCEEEECCCCCCcCCchHHHHHHH
Q 032797 25 NPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (133)
Q Consensus 25 ~~i~vid~~~~~-------~~~i~~~l~~~G~~~~v~~~~~~-~~~~----l~~~~~DgvIl~GG~~~~~d~~~~~~~i~ 92 (133)
+|+++|-|..+- ...+.+.|++.|.++.+...... .... .....+|.+|+.||-|+. .+.+.
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl------~~v~~ 75 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTI------NEVVN 75 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChH------HHHHH
Confidence 367777554211 12356678888998877654322 2221 112368999999996643 33333
Q ss_pred Hh-C-CCCCEEE-EechH-HHHHHHhC
Q 032797 93 EL-G-PTVPLFG-VCMGL-QCIGEAFG 115 (133)
Q Consensus 93 ~~-~-~~~PvLG-IClG~-QlLa~a~G 115 (133)
.+ . .+.|.+| |=.|- =.+|+.+|
T Consensus 76 ~l~~~~~~~~lgiiP~Gt~N~~a~~l~ 102 (293)
T TIGR00147 76 ALIQLDDIPALGILPLGTANDFARSLG 102 (293)
T ss_pred HHhcCCCCCcEEEEcCcCHHHHHHHcC
Confidence 32 2 3467777 54443 23345455
No 235
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=78.96 E-value=5.9 Score=27.58 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=34.7
Q ss_pred ECCCCchHHHHHHHHh-CC---CeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHH---hCCCCCEEE
Q 032797 31 DNYDSFTYNLCQYMGE-LG---YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLE---LGPTVPLFG 102 (133)
Q Consensus 31 d~~~~~~~~i~~~l~~-~G---~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~---~~~~~PvLG 102 (133)
...-+.+..+.+++.+ .+ ..+++.+.. ....++ .+||.||+ |+|--.. -...+.+++++ .-.++|+.-
T Consensus 5 ~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~-~~~~~~--~~yD~vi~-gspiy~g~~~~~~~~fi~~~~~~l~~k~v~~ 80 (143)
T PF12724_consen 5 FSKTGNTKKIAEWIAEKLGEEGELVDLEKVE-EDEPDL--SDYDAVIF-GSPIYAGRIPGEMREFIKKNKDNLKNKKVAL 80 (143)
T ss_pred ECCCchHHHHHHHHHHHHhhhccEEEHHhhh-hccccc--ccCCEEEE-EEEEECCcCCHHHHHHHHHHHHHHcCCcEEE
Confidence 4444667777766654 33 333332221 112233 48999999 4433222 23334556654 234566655
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
++-
T Consensus 81 f~~ 83 (143)
T PF12724_consen 81 FSV 83 (143)
T ss_pred EEE
Confidence 443
No 236
>PRK13558 bacterio-opsin activator; Provisional
Probab=78.95 E-value=11 Score=32.54 Aligned_cols=81 Identities=9% Similarity=-0.008 Sum_probs=45.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCE
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~~~~~Pv 100 (133)
.+.++|+++|........+.+.|...|+.+............+....+|.+|+--. .|... ....+.++....++|+
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~~Dlvl~d~~--lp~~~g~~~l~~l~~~~~~~pi 82 (665)
T PRK13558 5 APTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGEIDCVVADHE--PDGFDGLALLEAVRQTTAVPPV 82 (665)
T ss_pred CcceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccCCCEEEEecc--CCCCcHHHHHHHHHhcCCCCCE
Confidence 33578999987666666677778777876654332110111222346898877322 22222 2344555554567898
Q ss_pred EEEe
Q 032797 101 FGVC 104 (133)
Q Consensus 101 LGIC 104 (133)
+-+.
T Consensus 83 I~lt 86 (665)
T PRK13558 83 VVVP 86 (665)
T ss_pred EEEE
Confidence 8875
No 237
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=78.92 E-value=3.7 Score=31.95 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=26.6
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
++|.+|.-||-| .++...+.+ ..++|+|||=.|.
T Consensus 25 ~~Dlvi~iGGDG------TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 25 EADVIVALGGDG------FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cCCEEEEECCCH------HHHHHHHHhcCCCCeEEEEeCCC
Confidence 579999999844 456667764 6789999999886
No 238
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=78.87 E-value=21 Score=26.50 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=23.5
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHH-------HHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRND-ELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~-~~~~~-------~l~~~~~DgvIl~GG 77 (133)
+.+++++.|+.+.+...+ ..+.+ .+...++||+|+.+.
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 21 AEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred HHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 456677789999887532 11221 122348999999764
No 239
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=78.45 E-value=3.6 Score=30.64 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=17.8
Q ss_pred HHHHHhCCCCCEEEEechHHHHHHHh
Q 032797 89 QTVLELGPTVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 89 ~~i~~~~~~~PvLGIClG~QlLa~a~ 114 (133)
+++.+...+++++|+|.|.|-+.+.+
T Consensus 152 ~a~~r~~~~~k~vGlCh~~~~~~~~l 177 (183)
T PF02056_consen 152 EALSRYTPKIKVVGLCHGPQGTRRQL 177 (183)
T ss_dssp HHHHHHSTTSEEEEE-SHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCCHHHHHHHH
Confidence 45554445699999999999876543
No 240
>PRK11914 diacylglycerol kinase; Reviewed
Probab=78.39 E-value=20 Score=28.07 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=35.2
Q ss_pred CCCeEEEEECCCC---c----hHHHHHHHHhCCCeEEEEeCCCC-CHHH----HccCCCCEEEECCCCCCc
Q 032797 23 NKNPIIVIDNYDS---F----TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAP 81 (133)
Q Consensus 23 ~~~~i~vid~~~~---~----~~~i~~~l~~~G~~~~v~~~~~~-~~~~----l~~~~~DgvIl~GG~~~~ 81 (133)
+.+|+++|-|..+ . ...+.+.|++.|+++.++..... +... ....++|.||+.||-|+.
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi 77 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVI 77 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 3467777755322 1 11366778889998876654211 1111 222468999999997754
No 241
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=78.25 E-value=20 Score=28.13 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
.+..++...+.+..+.+..... ..+.....+|.+++.||-| .++...+.. ..++|++||=.|+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGDG------tlL~~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 20 RLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDG------TLLRAARLLARLDIPVLGINLGH 89 (281)
T ss_pred HHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCcH------HHHHHHHHhccCCCCEEEEeCCC
Confidence 3556666677766654321000 1111224688888888744 355666664 5679999999993
No 242
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=78.05 E-value=17 Score=29.65 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=46.5
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
..++|+|+|........+.+.|+..|+.+............+....+|.+++--. -|...+ ...+.+++.....|++
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~DlvilD~~--m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVR--MAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCeEE
Confidence 4578999997666666788888888887755432111112233346888777221 122222 2344555545567888
Q ss_pred EEe
Q 032797 102 GVC 104 (133)
Q Consensus 102 GIC 104 (133)
-+.
T Consensus 82 ~lt 84 (441)
T PRK10365 82 IMT 84 (441)
T ss_pred EEE
Confidence 776
No 243
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=78.01 E-value=19 Score=31.33 Aligned_cols=58 Identities=28% Similarity=0.232 Sum_probs=35.2
Q ss_pred CCCCeEEEEECC----------------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----cc--CCCCEEEECCCCC
Q 032797 22 NNKNPIIVIDNY----------------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG 79 (133)
Q Consensus 22 ~~~~~i~vid~~----------------~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~--~~~DgvIl~GG~~ 79 (133)
...+||.|+-.+ |++...+...|++.|+++.....-..+.+.+ .. .++|.||.+||.+
T Consensus 184 ~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s 263 (633)
T PRK14498 184 YKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTS 263 (633)
T ss_pred ecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCc
Confidence 445677777433 2344567888999999876443211122222 11 2699999999975
No 244
>PLN03029 type-a response regulator protein; Provisional
Probab=77.67 E-value=14 Score=27.66 Aligned_cols=34 Identities=6% Similarity=0.069 Sum_probs=25.3
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEE
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~ 54 (133)
....++|+++|........+.+.|+..|+.+...
T Consensus 5 ~~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a 38 (222)
T PLN03029 5 TESQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTV 38 (222)
T ss_pred CCCCccEEEEeCCHHHHHHHHHHHHHcCceEEEE
Confidence 3566899999875555566778888889887654
No 245
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=77.66 E-value=13 Score=29.97 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=30.8
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCCCCHHH----Hc---cCCCCEEEECCCCC-CcCCc
Q 032797 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEE----LK---RKNPRGVLISPGPG-APQDS 84 (133)
Q Consensus 34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~----l~---~~~~DgvIl~GG~~-~~~d~ 84 (133)
|+....+..+|++.|+++..+..-..+.+. +. ..++|.||.+||-+ ++.|.
T Consensus 174 Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~~D~ 232 (312)
T PRK03604 174 DRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGPRDV 232 (312)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCCCcc
Confidence 344556888899999987654321011221 11 13699999999976 44443
No 246
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=77.60 E-value=19 Score=26.78 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=23.6
Q ss_pred HHHHHHh-CCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797 40 LCQYMGE-LGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~-~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG 77 (133)
+.+.+++ .|+++.+...+. +.+ .+...++||+|+.+.
T Consensus 21 i~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 21 MKEHAKVLGGVELQFEDAKN-DVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred HHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5667777 899888765431 211 122358999999664
No 247
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=77.52 E-value=3.9 Score=31.21 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=49.4
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh-CCCCCEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL-GPTVPLFG 102 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~-~~~~PvLG 102 (133)
++|++++-.......+...|+..|+++..........+.+... ||.+|+==+ -|.-.+ ...+.+|+. ....||+-
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviLD~~--lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLM--LPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEEECC--CCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5899998665667778899999999998775421112223334 999888221 233233 344556542 45678888
Q ss_pred Eech
Q 032797 103 VCMG 106 (133)
Q Consensus 103 IClG 106 (133)
+.--
T Consensus 78 Lta~ 81 (229)
T COG0745 78 LTAR 81 (229)
T ss_pred EECC
Confidence 7754
No 248
>PRK06756 flavodoxin; Provisional
Probab=77.33 E-value=21 Score=24.71 Aligned_cols=78 Identities=12% Similarity=-0.000 Sum_probs=42.1
Q ss_pred CeEEEE-ECCCCchHHHHH----HHHhCCCeEEEEeCCCC-CHHHHccCCCCEEEECCCCCC-cCCch-HHHHHHHHh--
Q 032797 25 NPIIVI-DNYDSFTYNLCQ----YMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGA-PQDSG-ISLQTVLEL-- 94 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~----~l~~~G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~~-~~d~~-~~~~~i~~~-- 94 (133)
|+|+|+ ...-+.+..+.+ .+++.|.++++.+..+. ...++. ++|+|++ |.|-. ..... .+.+++.++
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~--~~d~vi~-gspt~~~g~~p~~~~~fl~~l~~ 78 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILE--QYDGIIL-GAYTWGDGDLPDDFLDFYDAMDS 78 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHh--cCCeEEE-EeCCCCCCCCcHHHHHHHHHHhc
Confidence 467666 444455665554 45556888877764322 233443 7999998 44321 11111 244444432
Q ss_pred --CCCCCEEEEec
Q 032797 95 --GPTVPLFGVCM 105 (133)
Q Consensus 95 --~~~~PvLGICl 105 (133)
-+++|+.-++.
T Consensus 79 ~~l~~k~~~~fgt 91 (148)
T PRK06756 79 IDLTGKKAAVFGS 91 (148)
T ss_pred CCCCCCEEEEEeC
Confidence 25777766655
No 249
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=77.24 E-value=13 Score=29.74 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=31.0
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECC
Q 032797 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISP 76 (133)
Q Consensus 22 ~~~~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~G 76 (133)
....+|.++-. ...|-. .+.++.++.|+++.+......+. +++...++|+|++++
T Consensus 21 ~~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~ 88 (336)
T PRK15408 21 QAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSA 88 (336)
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 34557777733 223322 25566777899987633221221 223345899999964
No 250
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=77.22 E-value=3.6 Score=33.61 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=35.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (133)
.+.+.|..+|++..++.-...+- +++ ..|.||-.||-|...-. .=|-.+..+||+||
T Consensus 79 ~~~~~l~k~giesklv~R~~lsq-~i~--waD~VisvGGDGTfL~A-----asrv~~~~~PViGv 135 (395)
T KOG4180|consen 79 FCQEELSKAGIESKLVSRNDLSQ-PIR--WADMVISVGGDGTFLLA-----ASRVIDDSKPVIGV 135 (395)
T ss_pred HHHHHHhhCCcceeeeehhhccC-cCc--hhhEEEEecCccceeeh-----hhhhhccCCceeee
Confidence 34556777888887765332222 233 68999999997653211 11123678999998
No 251
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=77.18 E-value=18 Score=26.10 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=43.7
Q ss_pred EEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEec
Q 032797 29 VIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (133)
Q Consensus 29 vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGICl 105 (133)
+.....++|..+.+++.+ ++. .++++..+. .+++ .+||.|++..+...-.-+....++|..+ ..++-+||-|-
T Consensus 3 vYsS~TGNTkkvA~aI~~~l~~-~~~~~~~~~-~~~~--~~yD~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~G 77 (160)
T PF12641_consen 3 VYSSRTGNTKKVAEAIAEALGA-KDIVSVEEP-PEDL--EDYDLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTAG 77 (160)
T ss_pred EEECCCChHHHHHHHHHHHCCC-ceeEecccc-ccCC--CCCCEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEecC
Confidence 445566788889988876 555 344444322 1223 4899999854433222234456778776 45667777773
No 252
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=76.86 E-value=17 Score=29.17 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=53.6
Q ss_pred ccccccCCCCCeEEEEECCCCchH-HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC-------chH
Q 032797 15 LDDKKSKNNKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-------SGI 86 (133)
Q Consensus 15 ~~~~~~~~~~~~i~vid~~~~~~~-~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d-------~~~ 86 (133)
+..+.......+|.|.+....+.. ...+.|++.|.+++++... ...-+. .++|.+++ |.-+ ... .+.
T Consensus 136 l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Ds--a~~~~~-~~vd~Viv-Gad~-I~~nG~lvnkiGT 210 (301)
T COG1184 136 LKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDS--AVGAFM-SRVDKVLV-GADA-ILANGALVNKIGT 210 (301)
T ss_pred HHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEech--HHHHHH-HhCCEEEE-Cccc-eecCCcEEeccch
Confidence 334445555678999988777754 4678999999999887632 112222 37898888 5422 222 222
Q ss_pred HHHHHHHhCCCCCEEEEechHH
Q 032797 87 SLQTVLELGPTVPLFGVCMGLQ 108 (133)
Q Consensus 87 ~~~~i~~~~~~~PvLGIClG~Q 108 (133)
..-.+-..+.++|++..|--+=
T Consensus 211 ~~lA~~A~e~~~Pf~v~aesyK 232 (301)
T COG1184 211 SPLALAARELRVPFYVVAESYK 232 (301)
T ss_pred HHHHHHHHHhCCCEEEEeeeec
Confidence 2112222356799999885443
No 253
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=76.83 E-value=27 Score=30.58 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=35.4
Q ss_pred CCCCeEEEEECC----------------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----cc--CCCCEEEECCCCC
Q 032797 22 NNKNPIIVIDNY----------------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG 79 (133)
Q Consensus 22 ~~~~~i~vid~~----------------~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~--~~~DgvIl~GG~~ 79 (133)
...+||.||-.+ |++...+...|++.|+++.....-..+.+.+ .. .++|.||.+||.+
T Consensus 365 ~~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s 444 (597)
T PRK14491 365 FRRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVS 444 (597)
T ss_pred ccCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 445678877433 3445567888999999875443211122222 11 3699999999965
No 254
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=76.73 E-value=6.9 Score=27.09 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=43.6
Q ss_pred CeEEEEEC---CCCchHHHHHH----HHhCCCeEEEEeCCCCC--------------HHH---Hcc--CCCCEEEECCCC
Q 032797 25 NPIIVIDN---YDSFTYNLCQY----MGELGYHFEVYRNDELT--------------VEE---LKR--KNPRGVLISPGP 78 (133)
Q Consensus 25 ~~i~vid~---~~~~~~~i~~~----l~~~G~~~~v~~~~~~~--------------~~~---l~~--~~~DgvIl~GG~ 78 (133)
|||++|.. .++.+..+.++ +++.|+++++++..+.. .++ +.. ..+|++|+ +.|
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~-~sP 79 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIF-ASP 79 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEE-EEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEE-eec
Confidence 68888853 23556555544 45569999998765320 011 111 26899999 443
Q ss_pred CCcCC-chHH---HHHHH----HhCCCCCEEEEech
Q 032797 79 GAPQD-SGIS---LQTVL----ELGPTVPLFGVCMG 106 (133)
Q Consensus 79 ~~~~d-~~~~---~~~i~----~~~~~~PvLGIClG 106 (133)
---.. ...+ ++.+. ..-.+||++.|+-|
T Consensus 80 ~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 80 VYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp EBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred EEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 21111 1222 33332 12368999999754
No 255
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=76.67 E-value=13 Score=33.99 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=49.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
...++|+|+|-.......+.+.|+..|+.+..........+.+....+|.|++-- ..|...+ ...+.+++.....|+
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~DlVl~D~--~mP~mdG~el~~~ir~~~~~~pI 876 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLTDV--NMPNMDGYRLTQRLRQLGLTLPV 876 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHhcCCCCCE
Confidence 3557899998655555567788999999876554321112223334789877621 1233333 345566666567999
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+++.-
T Consensus 877 I~lTa 881 (924)
T PRK10841 877 IGVTA 881 (924)
T ss_pred EEEEC
Confidence 98864
No 256
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=76.34 E-value=13 Score=30.94 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=35.0
Q ss_pred CCCCeEEEEECC----------------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----c--cCCCCEEEECCCCC
Q 032797 22 NNKNPIIVIDNY----------------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG 79 (133)
Q Consensus 22 ~~~~~i~vid~~----------------~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~--~~~~DgvIl~GG~~ 79 (133)
...+||.||-.+ +++...+..+|++.|+++.....-..+.+.+ . ..++|.||.+||.+
T Consensus 175 ~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 175 VRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred cCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 345688887433 2334457778999999876443211122322 1 13699999999965
No 257
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=76.15 E-value=12 Score=30.69 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=28.0
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----cc--CCCCEEEECCCCC
Q 032797 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG 79 (133)
Q Consensus 35 ~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~--~~~DgvIl~GG~~ 79 (133)
++...+...|++.|+++..+..-..+.+.+ .. ..+|.||.+||.+
T Consensus 195 sn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s 245 (394)
T cd00887 195 SNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS 245 (394)
T ss_pred ChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 444567788999999876543211122222 11 2599999999965
No 258
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=76.09 E-value=7.1 Score=33.83 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=27.3
Q ss_pred chHHHHHHHHhCCCeEEEEeCCCCCHHHHc----c--CCCCEEEECCCCC
Q 032797 36 FTYNLCQYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPG 79 (133)
Q Consensus 36 ~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~--~~~DgvIl~GG~~ 79 (133)
+...+...+++.|+++..+..-..+.+++. . .++|.||++||.+
T Consensus 207 Ns~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS 256 (546)
T PRK14497 207 NLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTS 256 (546)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 344577779999998765432111233321 1 3699999999864
No 259
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=76.06 E-value=15 Score=24.41 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHH----ccCCCCEEEECCCCCCcC-CchHHHHHHHHhCC-CCCEE
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQ-DSGISLQTVLELGP-TVPLF 101 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~~l----~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~~~-~~PvL 101 (133)
.+...|+..|+++.....+ .+.+++ ...++|.|.+|....... ....+.+.+++... +++++
T Consensus 18 ~~~~~l~~~G~~V~~lg~~-~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~ 85 (119)
T cd02067 18 IVARALRDAGFEVIDLGVD-VPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVL 85 (119)
T ss_pred HHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEE
Confidence 4677889999999665443 444443 345899999987632211 12233445554433 44443
No 260
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=75.99 E-value=16 Score=32.74 Aligned_cols=82 Identities=11% Similarity=0.117 Sum_probs=49.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCch-HHHHHHHHhCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~ 98 (133)
..+.+|+++|........+.+.|...|+++..........+.+.. ..+|.+++ . .+...+ .....++.....+
T Consensus 695 ~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll-~---~~~~~g~~l~~~l~~~~~~i 770 (828)
T PRK13837 695 GRGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV-D---DRLLDEEQAAAALHAAAPTL 770 (828)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE-C---CCCCCHHHHHHHHHhhCCCC
Confidence 345689999876566667788898899988765432111222221 23788888 2 222222 3345555555678
Q ss_pred CEEEEechH
Q 032797 99 PLFGVCMGL 107 (133)
Q Consensus 99 PvLGIClG~ 107 (133)
|++-++-..
T Consensus 771 pIIvls~~~ 779 (828)
T PRK13837 771 PIILGGNSK 779 (828)
T ss_pred CEEEEeCCC
Confidence 999888643
No 261
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=75.86 E-value=26 Score=25.31 Aligned_cols=79 Identities=13% Similarity=0.251 Sum_probs=44.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
..+|+++|....+...+.+.|+..|+.+............+....+|.+++--. .+...+ ...+.++. ....|++-
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~--~~~~~g~~~~~~l~~-~~~~pii~ 86 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTPPDLILLDLM--LPGTDGLTLCREIRR-FSDIPIVM 86 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCCEEE
Confidence 348999987666667788888888887654332110112233346898887322 122222 23344443 24588887
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
++-
T Consensus 87 l~~ 89 (240)
T PRK10710 87 VTA 89 (240)
T ss_pred EEc
Confidence 764
No 262
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=75.76 E-value=15 Score=25.86 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=40.6
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
|+|+++|........+.+.|+..|+.+...-.+... ...+....+|.+++--. .+...+ ...+.++......|++.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVD--IPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCeEEE
Confidence 578999876566667888888888776422111111 12233346887777332 122122 23344444333466655
Q ss_pred E
Q 032797 103 V 103 (133)
Q Consensus 103 I 103 (133)
+
T Consensus 79 l 79 (204)
T PRK09958 79 V 79 (204)
T ss_pred E
Confidence 4
No 263
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=75.75 E-value=28 Score=25.87 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=32.0
Q ss_pred HHHHHHhCCCeEEEEeCCC-CCH-------HHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 40 LCQYMGELGYHFEVYRNDE-LTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~-~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
+.+++++.|+++.+...+. .+. +.+...++||+|+.+... ....+.+..+ +.++|+..+
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-----~~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 21 YENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISD-----VNLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCCh-----HHhHHHHHHHHHCCCeEEEE
Confidence 4566777899988764321 111 112234799999965321 1111223333 456887766
No 264
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=75.70 E-value=25 Score=26.00 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=43.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC---CCHHHH------------------------ccCCCCEEEEC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEEL------------------------KRKNPRGVLIS 75 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~---~~~~~l------------------------~~~~~DgvIl~ 75 (133)
.+-+|+++.....+...+.+..+..|......++-. ...... ....+|.||+.
T Consensus 55 ~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~ 134 (193)
T cd01425 55 KGGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVL 134 (193)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEe
Confidence 356888888765555556556666666543332211 112211 22368999986
Q ss_pred CCCCCcCCchHHHHHHHHh-CCCCCEEEEec
Q 032797 76 PGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (133)
Q Consensus 76 GG~~~~~d~~~~~~~i~~~-~~~~PvLGICl 105 (133)
. |..+ ..++++. .-++|+.|+|-
T Consensus 135 ~----~~~~---~~ai~Ea~~l~IP~I~i~D 158 (193)
T cd01425 135 D----PRKE---HQAIREASKLGIPVIAIVD 158 (193)
T ss_pred C----Cccc---hHHHHHHHHcCCCEEEEec
Confidence 4 2222 2456664 56799999993
No 265
>PRK11173 two-component response regulator; Provisional
Probab=75.59 E-value=21 Score=26.03 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
..+|++++........+...|+..|+.+............+....+|.+++--. -|...+ ...+.++. ....|++-
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~-~~~~pii~ 79 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDIN--LPGKNGLLLARELRE-QANVALMF 79 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEcCC--CCCCCHHHHHHHHhc-CCCCCEEE
Confidence 358999987656666788888888887654432111112233346898887322 122222 22334443 24678877
Q ss_pred Ee
Q 032797 103 VC 104 (133)
Q Consensus 103 IC 104 (133)
+.
T Consensus 80 lt 81 (237)
T PRK11173 80 LT 81 (237)
T ss_pred EE
Confidence 64
No 266
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.83 E-value=12 Score=28.03 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~G 76 (133)
.+.+.+++.|+++.+.... .+.+ .+....+||+|+.+
T Consensus 20 ~i~~~~~~~g~~v~~~~~~-~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 20 AAKAHAKALGYELISTDAQ-GDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred HHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3556777889998876543 1221 12235899999965
No 267
>PRK15115 response regulator GlrR; Provisional
Probab=74.61 E-value=24 Score=28.84 Aligned_cols=82 Identities=12% Similarity=0.187 Sum_probs=46.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
....+|+|+|........+...++..|+.+............+....+|.+|+--. .|...+ .....++......|+
T Consensus 3 ~~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~~dlvilD~~--lp~~~g~~ll~~l~~~~~~~pv 80 (444)
T PRK15115 3 RKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREKVDLVISDLR--MDEMDGMQLFAEIQKVQPGMPV 80 (444)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhcCCCCcE
Confidence 34578999998666666788888888887654332111112233346888877322 122222 233444444456888
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-++-
T Consensus 81 Ivlt~ 85 (444)
T PRK15115 81 IILTA 85 (444)
T ss_pred EEEEC
Confidence 88763
No 268
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.23 E-value=22 Score=26.56 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=34.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
+.+.+++.|+.+.+...+..+.+ .+...++||+|+.+.. .....+.++.+ +.++|++-+-
T Consensus 22 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~-----~~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 22 AEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPD-----PDALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-----hHHhHHHHHHHHHCCCeEEEeC
Confidence 45666778999988765421221 1223589999997632 11112334443 4568887774
No 269
>PRK13054 lipid kinase; Reviewed
Probab=74.08 E-value=21 Score=27.97 Aligned_cols=57 Identities=18% Similarity=0.036 Sum_probs=34.3
Q ss_pred CCeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCC-CCHHH----HccCCCCEEEECCCCCC
Q 032797 24 KNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGA 80 (133)
Q Consensus 24 ~~~i~vid~~~~~----~~~i~~~l~~~G~~~~v~~~~~-~~~~~----l~~~~~DgvIl~GG~~~ 80 (133)
.+++++|-|..+- ...+.+.|++.|.++++..... ....+ ....++|.||+.||-|+
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGT 68 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGT 68 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccH
Confidence 4567777664442 1235567888899887655421 12222 22246899999999774
No 270
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=73.95 E-value=19 Score=26.80 Aligned_cols=40 Identities=5% Similarity=0.141 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
..+.+.+++.|+++.+........ ..+....+||+|+.+.
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 346667788999998876532111 1122357999999764
No 271
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.58 E-value=15 Score=27.29 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=23.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+++.+.... .+. ..+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~-~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 21 VKSKAKALGYDAVELSAE-NSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred HHHHHHhcCCeEEEecCC-CCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 455667789998876543 121 1222358999999653
No 272
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=73.57 E-value=28 Score=27.57 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCC-CHHH----HccCCCCEEEECCCCCCc
Q 032797 39 NLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAP 81 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~-~~~~----l~~~~~DgvIl~GG~~~~ 81 (133)
.+.+.|++.|.+...+..... ...+ .....+|.||..||-|..
T Consensus 24 ~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv 71 (301)
T COG1597 24 EVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTV 71 (301)
T ss_pred HHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchH
Confidence 356678889998887765432 2222 223479999999997754
No 273
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=73.55 E-value=16 Score=27.21 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECCCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGP 78 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG~ 78 (133)
.+.+.+++.|+.+.+....... .+.+....+||+|+.++.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (273)
T cd01541 20 GIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTK 65 (273)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 3566777789999876543111 112334589999997753
No 274
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=73.55 E-value=29 Score=25.54 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC-------HHHHccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELT-------VEELKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~-------~~~l~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+.+.+...+..+ .+.+....+||+|+.+.
T Consensus 20 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 20 AIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred HHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3566777789998877543211 11222357999999764
No 275
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=73.26 E-value=23 Score=28.24 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~G 76 (133)
.+.+.+++.|+.+.+...+. +.+ .+....+||+|+.|
T Consensus 79 gi~~~~~~~gy~~~l~~~~~-~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 79 GIEEAAREAGYSLLLANTDD-DPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEec
Confidence 45667788999998887653 222 23345899999988
No 276
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=72.83 E-value=14 Score=27.44 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=21.0
Q ss_pred HHHHHHhC---CC--eEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797 40 LCQYMGEL---GY--HFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~---G~--~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG 77 (133)
+.+.+++. |. ++.+.... .+.+ .+...++||||+.+.
T Consensus 21 i~~~~~~~~~~g~~~~l~i~~~~-~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 21 FKAQAKELKKAGLISEFIVTSAD-GDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred HHHHHHhhhccCCeeEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44566677 87 44554432 1211 122358999999764
No 277
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=72.26 E-value=27 Score=28.62 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=44.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
..+|+++|........+...|+..|+.+............+....+|.+++--. .|...+ ...+.++......|++.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlillD~~--~p~~~g~~ll~~i~~~~~~~pvI~ 81 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIR--MPEMDGIKALKEMRSHETRTPVIL 81 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEE
Confidence 457999997666666677888888887765432111112233346887776322 222222 23444544445688887
Q ss_pred Ee
Q 032797 103 VC 104 (133)
Q Consensus 103 IC 104 (133)
+.
T Consensus 82 lt 83 (457)
T PRK11361 82 MT 83 (457)
T ss_pred Ee
Confidence 65
No 278
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=72.07 E-value=28 Score=28.73 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=45.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
+.+|+|+|....+...+.+.|+..|+.+............+....+|.+++--. .|...+ ...+.++......|++-
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~~DlvllD~~--lp~~dgl~~l~~ir~~~~~~pvIv 80 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIR--MPGMDGLALLKQIKQRHPMLPVII 80 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEECCC--CCCCCHHHHHHHHHhhCCCCeEEE
Confidence 358999987666666788889888887654432111112233346887776321 122222 23445554445688888
Q ss_pred Ee
Q 032797 103 VC 104 (133)
Q Consensus 103 IC 104 (133)
++
T Consensus 81 lt 82 (469)
T PRK10923 81 MT 82 (469)
T ss_pred EE
Confidence 86
No 279
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=71.99 E-value=41 Score=25.56 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=46.1
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCCC----CHHHHccCCCCEEEECCCCC-CcCCchHHHHHHHHhCCCCCEEEEechHH
Q 032797 34 DSFTYNLCQYMGELGYHFEVYRNDEL----TVEELKRKNPRGVLISPGPG-APQDSGISLQTVLELGPTVPLFGVCMGLQ 108 (133)
Q Consensus 34 ~~~~~~i~~~l~~~G~~~~v~~~~~~----~~~~l~~~~~DgvIl~GG~~-~~~d~~~~~~~i~~~~~~~PvLGIClG~Q 108 (133)
++....+.+.|++.|+++++...++. +.+.+. .+|.||.-+-.+ +.-+......+.+.+.++.=++|+=-|+-
T Consensus 22 ~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~--~~D~lV~~~~~~~~~l~~eq~~~l~~~V~~GgGlv~lHsg~~ 99 (215)
T cd03142 22 DGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLA--ETDVLLWWGHIAHDEVKDEIVERVHRRVLDGMGLIVLHSGHY 99 (215)
T ss_pred chHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHh--cCCEEEEeCCCCcCcCCHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 34556688889999998886554321 222343 799999833222 22233333344455566777777655442
Q ss_pred --HHHHHhCCe
Q 032797 109 --CIGEAFGDC 117 (133)
Q Consensus 109 --lLa~a~GG~ 117 (133)
-...-.||.
T Consensus 100 s~~y~~lvGg~ 110 (215)
T cd03142 100 SKIFKKLMGTT 110 (215)
T ss_pred CHHHHHhhCCc
Confidence 222346664
No 280
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=71.84 E-value=7.3 Score=27.89 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=41.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
|+|++++....+...+...|+..|..+............+....+|.+++--. .|...+ ...+.++.. ...|++-+
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~-~~~~ii~l 77 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIM--LPGMDGWQILQTLRTA-KQTPVICL 77 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHcC-CCCCEEEE
Confidence 47899987666666777888888876554432111112223347898887322 111222 223334332 35787776
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
.
T Consensus 78 s 78 (223)
T PRK11517 78 T 78 (223)
T ss_pred E
Confidence 5
No 281
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.78 E-value=20 Score=27.28 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=21.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECC
Q 032797 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~G 76 (133)
+.+.+++.|+.+.++.....+.+ .+...++||+|+.+
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~ 64 (294)
T cd06316 21 AKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIP 64 (294)
T ss_pred HHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 45667778998875422211221 12234799999965
No 282
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=71.64 E-value=35 Score=25.85 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
.+.+.+++.|+.+.+..... +.+ .+...++||+|+.+... ....+.++++ +.++|+..+
T Consensus 20 gi~~~a~~~g~~~~~~~~~~-~~~~~~~~i~~~~~~~vdgiii~~~~~-----~~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 20 NFEAALKELGAEVIVQNANG-DPAKQISQIENMIAKGVDVLVIAPVDG-----EALASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCCh-----hhHHHHHHHHHHCCCCEEEE
Confidence 35566778899998876542 221 12335899999976321 1112334443 456887765
No 283
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=71.18 E-value=34 Score=27.67 Aligned_cols=97 Identities=11% Similarity=-0.062 Sum_probs=60.2
Q ss_pred ccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-----C--HH----HHccCCCCEEEECCCCCCcCCchHH
Q 032797 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-----T--VE----ELKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-----~--~~----~l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
+++..+.+|+|--. .....+.+.|++.|+++...|.-+. . .+ .+....||.+|++-+.+ ...+
T Consensus 6 ~~pL~g~rIlvtr~--~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ng----v~~~ 79 (381)
T PRK07239 6 SAPLAGFTVGVTAA--RRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIG----FRGW 79 (381)
T ss_pred CCCCCCcEEEEecc--CCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHH----HHHH
Confidence 45677889988853 2456788999999999887653211 1 11 11223699999976533 1112
Q ss_pred HHHHHH---------hCCCCCEEEEechHHHHHHHhCCeeeec
Q 032797 88 LQTVLE---------LGPTVPLFGVCMGLQCIGEAFGDCAFSA 121 (133)
Q Consensus 88 ~~~i~~---------~~~~~PvLGIClG~QlLa~a~GG~v~~~ 121 (133)
.+.+++ .-.+.|++.|--+---....+|-++.-.
T Consensus 80 ~~~l~~~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~G~~~~~~ 122 (381)
T PRK07239 80 VEAADGWGLADELLEALSSARLLARGPKATGAIRAAGLREEWS 122 (381)
T ss_pred HHHHHHcCChHHHHHHHcCCeEEEECccHHHHHHHcCCCCccC
Confidence 222221 1246889988888777777788765543
No 284
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=70.86 E-value=23 Score=23.54 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=42.7
Q ss_pred eEEEEECCCCch--HHHHHHHHhCCCeEEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 032797 26 PIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF 101 (133)
Q Consensus 26 ~i~vid~~~~~~--~~i~~~l~~~G~~~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvL 101 (133)
||.++-.+.++. ..+...+...|.........+........ ..-|.+|+..-.| ...+..+.++.+ +++.|++
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG---~t~~~~~~~~~a~~~g~~vi 78 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSG---ETDELLNLLPHLKRRGAPII 78 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCC---CCHHHHHHHHHHHHCCCeEE
Confidence 577777765553 23455566678777655322111111111 1346666544333 333445566664 6789999
Q ss_pred EEechH
Q 032797 102 GVCMGL 107 (133)
Q Consensus 102 GIClG~ 107 (133)
+|+-..
T Consensus 79 ~iT~~~ 84 (128)
T cd05014 79 AITGNP 84 (128)
T ss_pred EEeCCC
Confidence 999753
No 285
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=70.86 E-value=18 Score=27.93 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=24.7
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECC
Q 032797 37 TYNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISP 76 (133)
Q Consensus 37 ~~~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~G 76 (133)
...+.+.+++.|+++.+........ +.+...++||||+.+
T Consensus 17 ~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~ 62 (302)
T TIGR02634 17 RDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIP 62 (302)
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4456777788899887765431111 112235789999965
No 286
>PRK06849 hypothetical protein; Provisional
Probab=70.78 E-value=33 Score=27.77 Aligned_cols=55 Identities=11% Similarity=0.242 Sum_probs=35.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~ 78 (133)
.+++|+|+.........+.+.|.+.|+++.++.......... ....|..+..++|
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~-s~~~d~~~~~p~p 57 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRF-SRAVDGFYTIPSP 57 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHH-HHhhhheEEeCCC
Confidence 467899997654445679999999999998876542122111 1235666654544
No 287
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=70.70 E-value=21 Score=26.26 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
.+.+++++.|+.+.+........ +.+...++||+|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 20 AIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 45667778899988876532111 1223358999999875
No 288
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=70.28 E-value=24 Score=31.41 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=48.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh----CCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL----GPT 97 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~----~~~ 97 (133)
.+++|+|+|........+.+.|+..|+++..........+.+....+|.+++ .- ..|...+ ...+.+++. ...
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~-D~-~mp~~~G~~~~~~ir~~~~~~~~~ 766 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHRFDLVLM-DI-RMPGLDGLETTQLWRDDPNNLDPD 766 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEE-eC-CCCCCCHHHHHHHHHhchhhcCCC
Confidence 3468999987555566678889889998775432111122233447898776 21 1233333 234555542 256
Q ss_pred CCEEEEec
Q 032797 98 VPLFGVCM 105 (133)
Q Consensus 98 ~PvLGICl 105 (133)
+|++.+.-
T Consensus 767 ~pii~lt~ 774 (921)
T PRK15347 767 CMIVALTA 774 (921)
T ss_pred CcEEEEeC
Confidence 89998864
No 289
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=70.06 E-value=15 Score=27.66 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC-----HHHHccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~-----~~~l~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+.+.++..+... .+.+...++||+|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 20 FAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred HHHHHHHHcCCEEEEccCCCHHHHHHHHHHHHHcCCCEEEEccC
Confidence 3566777889998877543111 01122357999999763
No 290
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=70.01 E-value=24 Score=29.64 Aligned_cols=102 Identities=15% Similarity=0.252 Sum_probs=56.1
Q ss_pred cccccccccccCC----CCCeEEEE-----ECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCC
Q 032797 10 SKSLYLDDKKSKN----NKNPIIVI-----DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80 (133)
Q Consensus 10 ~~~~~~~~~~~~~----~~~~i~vi-----d~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~ 80 (133)
+--|+-++..... ..+.|+++ +..++|...++..+++.|+.+.+.......-.++. .. .+.+.| +
T Consensus 107 ~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~Lt--Tp--r~f~ag--~ 180 (409)
T KOG1838|consen 107 TLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLT--TP--RLFTAG--W 180 (409)
T ss_pred EEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccC--CC--ceeecC--C
Confidence 4456656665432 33444444 22334555677777889999988765321111121 01 122222 3
Q ss_pred cCCchHHHHHHHH-h-CCCCCEEEEechHHHHHHHhCCe
Q 032797 81 PQDSGISLQTVLE-L-GPTVPLFGVCMGLQCIGEAFGDC 117 (133)
Q Consensus 81 ~~d~~~~~~~i~~-~-~~~~PvLGIClG~QlLa~a~GG~ 117 (133)
..|.....+.|++ + ++..=..|.-+|.-+|..+||=+
T Consensus 181 t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~ 219 (409)
T KOG1838|consen 181 TEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEE 219 (409)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhhc
Confidence 3344445566666 3 44455567788999999999865
No 291
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=69.95 E-value=27 Score=25.74 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
.+.+.+++.|+.+.+...+. +.+ .+...++||+|+.+... ... .++.+ +.++|++.+
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~~~~~----~~~---~~~~l~~~~iPvv~~ 84 (268)
T cd06273 20 AFQETLAAHGYTLLVASSGY-DLDREYAQARKLLERGVDGLALIGLDH----SPA---LLDLLARRGVPYVAT 84 (268)
T ss_pred HHHHHHHHCCCEEEEecCCC-CHHHHHHHHHHHHhcCCCEEEEeCCCC----CHH---HHHHHHhCCCCEEEE
Confidence 35666778899988765431 211 12234799999976421 112 22222 456787765
No 292
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=69.89 E-value=30 Score=25.50 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=36.1
Q ss_pred HHHHHHhCCCeEEEE-eCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEech
Q 032797 40 LCQYMGELGYHFEVY-RNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (133)
Q Consensus 40 i~~~l~~~G~~~~v~-~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG 106 (133)
+.++.++.|+++.++ +.. .+.+ .+...++||||+.+.. .....+.++++ ++++||..+=..
T Consensus 20 ~~~~a~~~g~~~~~~~~~~-~d~~~q~~~i~~~i~~~~d~Iiv~~~~-----~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 20 AKAAAKELGYEVEIVFDAQ-NDPEEQIEQIEQAISQGVDGIIVSPVD-----PDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHTCEEEEEEEST-TTHHHHHHHHHHHHHTTESEEEEESSS-----TTTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHcCCEEEEeCCCC-CCHHHHHHHHHHHHHhcCCEEEecCCC-----HHHHHHHHHHHhhcCceEEEEecc
Confidence 455667789999985 543 2221 2223589999996642 22222445554 567888876433
No 293
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=69.64 E-value=17 Score=26.78 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG 77 (133)
.+.+++++.|+++.+...+.... +.+....+||+|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 20 GALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred HHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 35567778899988876542211 1122347999999765
No 294
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=69.55 E-value=25 Score=25.12 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=36.7
Q ss_pred CEEEECCCCCCcCCc--hHH-HHHHHHh-CCCCCEEEEech--------HHHHHHHhCCeeeeccC
Q 032797 70 RGVLISPGPGAPQDS--GIS-LQTVLEL-GPTVPLFGVCMG--------LQCIGEAFGDCAFSAWC 123 (133)
Q Consensus 70 DgvIl~GG~~~~~d~--~~~-~~~i~~~-~~~~PvLGIClG--------~QlLa~a~GG~v~~~~~ 123 (133)
-.|+||-|..+.... ... .++.+++ +.+++++.|+.| ++-||.+-||+....+.
T Consensus 101 ~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d 166 (178)
T cd01451 101 LIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPD 166 (178)
T ss_pred EEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCc
Confidence 467778775443211 112 3445554 678999999987 58899999999887654
No 295
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=69.48 E-value=31 Score=23.13 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=28.9
Q ss_pred ECCCCchHHHHHH----HHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCC
Q 032797 31 DNYDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (133)
Q Consensus 31 d~~~~~~~~i~~~----l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~ 78 (133)
....+.+..+.+. +.+.|.++++.+..+.+..++. ++|.||+ |.|
T Consensus 6 ~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~--~~d~iil-gsp 54 (140)
T TIGR01753 6 ASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLL--SYDAVLL-GCS 54 (140)
T ss_pred ECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHh--cCCEEEE-EcC
Confidence 4444566665554 4456888888876555555664 6999988 443
No 296
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=69.42 E-value=52 Score=25.68 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCeEEEEECCCCchH--------HHHHHHHhCCCeEEEEeCCCCC-HHHHccCCCCEEEE
Q 032797 24 KNPIIVIDNYDSFTY--------NLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLI 74 (133)
Q Consensus 24 ~~~i~vid~~~~~~~--------~i~~~l~~~G~~~~v~~~~~~~-~~~l~~~~~DgvIl 74 (133)
++||+|+-.+.|-.+ .+.++|++.|++++.+..+... ...+...++|.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~ 62 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFV 62 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEE
Confidence 578999966655432 3778899999998777543111 23343446886654
No 297
>PRK09191 two-component response regulator; Provisional
Probab=69.36 E-value=31 Score=25.58 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=44.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHccCCCCEEEECCCCCCcC-Cch-HHHHHHHHhCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQ-DSG-ISLQTVLELGPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~~~~-d~~-~~~~~i~~~~~~~ 98 (133)
....+++++|....+...+...|+..|+.+.....+.. ..+.+....+|.+|+--. .|. ..+ ...+.++... .+
T Consensus 135 ~~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~~~~g~e~l~~l~~~~-~~ 211 (261)
T PRK09191 135 QVATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LADGSSGIDAVNDILKTF-DV 211 (261)
T ss_pred cCCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCCCCCHHHHHHHHHHhC-CC
Confidence 44567899987656666677888888877652222211 122233346898888432 121 112 2233343333 78
Q ss_pred CEEEEec
Q 032797 99 PLFGVCM 105 (133)
Q Consensus 99 PvLGICl 105 (133)
|++-+.-
T Consensus 212 pii~ls~ 218 (261)
T PRK09191 212 PVIFITA 218 (261)
T ss_pred CEEEEeC
Confidence 9987754
No 298
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=68.76 E-value=61 Score=26.92 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=37.0
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHc--------------cCCCCEEEECCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELK--------------RKNPRGVLISPGP 78 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~~~~l~--------------~~~~DgvIl~GG~ 78 (133)
.++++|+|+.-+.+-...+.+.|.+.|+++........ ..+++. -.++|.||+|+|-
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi 76 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAI 76 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCC
Confidence 34567899988766655578899999998877643211 111111 0258999999984
No 299
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=68.34 E-value=26 Score=30.90 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=48.7
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhC--CC-
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELG--PT- 97 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~--~~- 97 (133)
..+.+|+|+|........+.+.|+..|+.+..........+.+....||.+++ .- ..|...+ ...+.|++.. ..
T Consensus 523 ~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~Dlvl~-D~-~mp~~~G~e~~~~ir~~~~~~~~ 600 (779)
T PRK11091 523 LPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPDEYDLVLL-DI-QLPDMTGLDIARELRERYPREDL 600 (779)
T ss_pred ccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCCCCEEEE-cC-CCCCCCHHHHHHHHHhccccCCC
Confidence 44578999987655566677888889988776532111122233347898777 21 2233333 2345565532 44
Q ss_pred CCEEEEech
Q 032797 98 VPLFGVCMG 106 (133)
Q Consensus 98 ~PvLGIClG 106 (133)
.|++.++-.
T Consensus 601 ~~ii~~ta~ 609 (779)
T PRK11091 601 PPLVALTAN 609 (779)
T ss_pred CcEEEEECC
Confidence 488888754
No 300
>PRK13055 putative lipid kinase; Reviewed
Probab=68.25 E-value=60 Score=25.92 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=33.4
Q ss_pred CeEEEEECCCCch-------HHHHHHHHhCCCeEEEEeCC--CCCHHH----HccCCCCEEEECCCCCCc
Q 032797 25 NPIIVIDNYDSFT-------YNLCQYMGELGYHFEVYRND--ELTVEE----LKRKNPRGVLISPGPGAP 81 (133)
Q Consensus 25 ~~i~vid~~~~~~-------~~i~~~l~~~G~~~~v~~~~--~~~~~~----l~~~~~DgvIl~GG~~~~ 81 (133)
+|+++|-|..+-. ..+.+.|++.|++++++... .....+ ....++|.||+.||-|+.
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl 72 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTI 72 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHH
Confidence 5777775532211 13556788889887765332 112222 222468999999997753
No 301
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=67.96 E-value=25 Score=26.66 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=39.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH--HHHc-cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV--EELK-RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~--~~l~-~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (133)
+.+|+++.........+.+.-++.|.....-++-.-++ ..+. ...+|.+|++. |..+ ...+++. .-++|
T Consensus 67 ~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~d----p~~~---~~AI~EA~kl~IP 139 (204)
T PRK04020 67 PEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTD----PRGD---AQAVKEAIEVGIP 139 (204)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEEC----Cccc---HHHHHHHHHhCCC
Confidence 45677776554444445555555666554333311110 0111 12578888743 2222 3456654 56799
Q ss_pred EEEEe
Q 032797 100 LFGVC 104 (133)
Q Consensus 100 vLGIC 104 (133)
+.|||
T Consensus 140 ~Iaiv 144 (204)
T PRK04020 140 VVALC 144 (204)
T ss_pred EEEEE
Confidence 99999
No 302
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=67.81 E-value=21 Score=26.54 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=32.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH----HccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 40 LCQYMGELGYHFEVYRNDELTVEE----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~~----l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
+.+.+++.|+++.++..+...... +...++||+|+.+...+ . ..++++ +.++|+..+
T Consensus 32 i~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~----~---~~~~~~~~~~ipvV~~ 93 (275)
T cd06295 32 IADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ----D---PLPERLAETGLPFVVW 93 (275)
T ss_pred HHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC----h---HHHHHHHhCCCCEEEE
Confidence 556677789999887654221111 22347999999764321 1 223333 456777643
No 303
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=67.54 E-value=36 Score=24.79 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=42.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
++|++++........+...|+..|+++............+....+|.+|+--. .|...+ ...+.++. ....|++-+
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~~~~~ir~-~~~~pii~l 78 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQPDLVLLDIM--LPGKDGMTICRDLRP-KWQGPIVLL 78 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCCEEEE
Confidence 47899987656666788888888887765432111112233346898887322 222222 23344544 234677766
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
.
T Consensus 79 ~ 79 (240)
T PRK10701 79 T 79 (240)
T ss_pred E
Confidence 4
No 304
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=67.50 E-value=23 Score=26.68 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=38.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~---~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (133)
+.+|+++.........+.+.-+..|.....-++-.- ....-.-..+|.+|+. +|..+ ...+++. .-++|
T Consensus 61 ~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~----dp~~~---~~Av~EA~~l~IP 133 (196)
T TIGR01012 61 PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVT----DPRAD---HQALKEASEVGIP 133 (196)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEE----CCccc---cHHHHHHHHcCCC
Confidence 346677765444444444444455655433322110 1110011257888874 23222 3456664 57899
Q ss_pred EEEEec
Q 032797 100 LFGVCM 105 (133)
Q Consensus 100 vLGICl 105 (133)
+.|||-
T Consensus 134 ~Iai~D 139 (196)
T TIGR01012 134 IVALCD 139 (196)
T ss_pred EEEEee
Confidence 999995
No 305
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=67.42 E-value=52 Score=27.93 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=25.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEe
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~ 55 (133)
..+++|+|+..+-+- ....++|.+.|+++.+..
T Consensus 5 ~~~~kv~V~GLG~sG-~a~a~~L~~~G~~v~v~D 37 (448)
T COG0771 5 FQGKKVLVLGLGKSG-LAAARFLLKLGAEVTVSD 37 (448)
T ss_pred ccCCEEEEEeccccc-HHHHHHHHHCCCeEEEEc
Confidence 347899999886443 468899999999988775
No 306
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=67.30 E-value=35 Score=26.22 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=40.3
Q ss_pred CCCCeEEEEECCCCc------------hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 22 NNKNPIIVIDNYDSF------------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 22 ~~~~~i~vid~~~~~------------~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
....+|.++...+.. ...+.+.|++. +.+..+... .++++ .++|.+|| .||..+....+. .
T Consensus 144 ~~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~---~~~IP-~~~d~Lvi-~~P~~~ls~~e~-~ 216 (271)
T PF09822_consen 144 DEKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA---NEEIP-DDADVLVI-AGPKTDLSEEEL-Y 216 (271)
T ss_pred ccCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCc---ccccC-CCCCEEEE-ECCCCCCCHHHH-H
Confidence 456678877433222 23466777777 766655432 34553 48999999 556555554443 4
Q ss_pred HHHH-hCCCCC
Q 032797 90 TVLE-LGPTVP 99 (133)
Q Consensus 90 ~i~~-~~~~~P 99 (133)
.|.+ +.+|-+
T Consensus 217 ~l~~yl~~GG~ 227 (271)
T PF09822_consen 217 ALDQYLMNGGK 227 (271)
T ss_pred HHHHHHHcCCe
Confidence 4554 343333
No 307
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=66.79 E-value=18 Score=25.92 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=43.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc---h-HHHHHHHHhCCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---G-ISLQTVLELGPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~---~-~~~~~i~~~~~~~P 99 (133)
.-.++++|.+ +-...+.+.|.... .+.++.+...-...+....---++++||.-++... + ...+.++++.-++-
T Consensus 19 ~~~~Ifld~G-tT~~~la~~L~~~~-~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~a 96 (161)
T PF00455_consen 19 DGDTIFLDSG-TTTLELAKYLPDKK-NLTVVTNSLPIANELSENPNIEVILLGGEVNPKSLSFVGPIALEALRQFRFDKA 96 (161)
T ss_pred CCCEEEEECc-hHHHHHHHHhhcCC-ceEEEECCHHHHHHHHhcCceEEEEeCCEEEcCCCcEECchHHHHHHhhccceE
Confidence 3456788874 44556778887763 55555553111233332222346666875554322 2 23566776655677
Q ss_pred EEEEe
Q 032797 100 LFGVC 104 (133)
Q Consensus 100 vLGIC 104 (133)
++|.|
T Consensus 97 fi~~~ 101 (161)
T PF00455_consen 97 FIGAD 101 (161)
T ss_pred Eeccc
Confidence 77655
No 308
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=66.69 E-value=35 Score=28.25 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=39.1
Q ss_pred CeEEEE-ECC---CCchHHHHHHHHhCCCeEEEEeCC--CCCHH-------HHccCCCCEEEECCCCCCcCCchHH
Q 032797 25 NPIIVI-DNY---DSFTYNLCQYMGELGYHFEVYRND--ELTVE-------ELKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 25 ~~i~vi-d~~---~~~~~~i~~~l~~~G~~~~v~~~~--~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.|++|+ |.+ .++...+.+.|.+.|.+..++..- +.+.+ .+...++|.||=.|| |++-|....
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D~AK~ 104 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVIDAAKA 104 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 577777 432 235566788888899887776421 12222 233468999997777 677666543
No 309
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=66.62 E-value=28 Score=29.70 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=47.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
..+|+|||-..+....+...|...|+.+........-.+.+....+|.|++ .= ..|...+ .+.+.+++...+.||.-
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~-Di-~mp~~~Gl~ll~~i~~~~~~~pVI~ 81 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLL-DI-RMPGMDGLELLKEIKSRDPDLPVIV 81 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEE-ec-CCCCCchHHHHHHHHhhCCCCCEEE
Confidence 457999997666677788899999988877643211122233334665555 21 1232222 34556666566788886
Q ss_pred Ee
Q 032797 103 VC 104 (133)
Q Consensus 103 IC 104 (133)
|-
T Consensus 82 ~T 83 (464)
T COG2204 82 MT 83 (464)
T ss_pred Ee
Confidence 53
No 310
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=66.58 E-value=72 Score=26.47 Aligned_cols=84 Identities=23% Similarity=0.346 Sum_probs=51.4
Q ss_pred CchHHHHHHHHhC-CCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCCchH----HHHHHHH-hCCCCCEE---E
Q 032797 35 SFTYNLCQYMGEL-GYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSGI----SLQTVLE-LGPTVPLF---G 102 (133)
Q Consensus 35 ~~~~~i~~~l~~~-G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d~~~----~~~~i~~-~~~~~PvL---G 102 (133)
+.++.-.++|++. +..+.+--. .+.++. ...++|+|++++..|...|... .+..+++ +..++|++ |
T Consensus 239 ~~tW~~i~~lr~~~~~pvivKgV--~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGG 316 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVLKGI--LHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSG 316 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEEecC--CCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCC
Confidence 3444555667663 555544323 344443 2358999999987664443321 2333433 45579988 7
Q ss_pred EechHHHH-HHHhCCeeee
Q 032797 103 VCMGLQCI-GEAFGDCAFS 120 (133)
Q Consensus 103 IClG~QlL-a~a~GG~v~~ 120 (133)
|-.|..++ |.++|++..-
T Consensus 317 Ir~G~Dv~KALaLGA~~v~ 335 (383)
T cd03332 317 VRTGADIMKALALGAKAVL 335 (383)
T ss_pred cCcHHHHHHHHHcCCCEEE
Confidence 88999998 6699997654
No 311
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=66.56 E-value=27 Score=22.93 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=31.4
Q ss_pred eEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCCCCHHHH----ccCCCCEEEECC
Q 032797 26 PIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISP 76 (133)
Q Consensus 26 ~i~vid~~~~~----~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~~~~DgvIl~G 76 (133)
|+++....... ...+...|++.|+++.++..+ .+.+++ ...++|.|.+|.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~-~~~~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN-VPPEELVEALRAERPDVVGISV 59 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS-B-HHHHHHHHHHTTCSEEEEEE
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC-CCHHHHHHHHhcCCCcEEEEEc
Confidence 45555443222 234677889999999988764 333333 345899999965
No 312
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=66.49 E-value=33 Score=26.36 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=24.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 78 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 121 (327)
T PRK10423 78 VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCT 121 (327)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5566777899988765432111 1123457999999764
No 313
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=66.29 E-value=43 Score=24.82 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=29.9
Q ss_pred HHHHHHh--CCCeEEEEeCCCCCH-------HHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 40 LCQYMGE--LGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 40 i~~~l~~--~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
+.+++++ .|+.+.+.... .+. +.+...++||+|+.+. ++ ....+.++++ +.++|+.-+
T Consensus 21 i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~dgiIi~~~--~~---~~~~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 21 AEAAAKKLNPGVKVTVVSAD-YDLNKQVSQIDNFIAAKVDLILLNAV--DS---KGIAPAVKRAQAAGIVVVAV 88 (271)
T ss_pred HHHHHHHhCCCeEEEEccCC-CCHHHHHHHHHHHHHhCCCEEEEeCC--Ch---hHhHHHHHHHHHCCCeEEEe
Confidence 5567777 66666555432 121 1122358999999653 11 1112233433 445776665
No 314
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=66.14 E-value=38 Score=24.85 Aligned_cols=59 Identities=12% Similarity=0.269 Sum_probs=32.7
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 032797 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (133)
.+.+.+++.|+.+.+...+... .+.+...++||+|+.+... .....+.+. ..++|++.+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~----~~~~~~~~~--~~~ipvv~~ 84 (268)
T cd01575 20 GISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEH----TERTRQLLR--AAGIPVVEI 84 (268)
T ss_pred HHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCC----CHHHHHHHH--hcCCCEEEE
Confidence 3556677789998877553211 1123335799999976431 112222222 346777765
No 315
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.02 E-value=19 Score=26.74 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=24.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+++.+...+.... +.+...++||||+.+.
T Consensus 24 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 24 IEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5566777899988776542211 1122358999999763
No 316
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=65.82 E-value=76 Score=26.21 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=50.7
Q ss_pred chHHHHHHHHhC-CCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCCch-HH---HHHHHH-hCCCCCEE---EE
Q 032797 36 FTYNLCQYMGEL-GYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSG-IS---LQTVLE-LGPTVPLF---GV 103 (133)
Q Consensus 36 ~~~~i~~~l~~~-G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d~~-~~---~~~i~~-~~~~~PvL---GI 103 (133)
.+..-.++|++. +.++.+--. .+.++. ...++|+|+++|--|...|.. .. +..+++ +..++||+ ||
T Consensus 211 ~tW~di~wlr~~~~~PiivKgV--~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGI 288 (367)
T PLN02493 211 LSWKDVQWLQTITKLPILVKGV--LTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGV 288 (367)
T ss_pred CCHHHHHHHHhccCCCEEeecC--CCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCc
Confidence 344445677763 444433322 234442 235899999998766443432 12 223333 35678888 89
Q ss_pred echHHHH-HHHhCCeeee
Q 032797 104 CMGLQCI-GEAFGDCAFS 120 (133)
Q Consensus 104 ClG~QlL-a~a~GG~v~~ 120 (133)
..|..++ |.++|++..-
T Consensus 289 r~G~Dv~KALALGA~aV~ 306 (367)
T PLN02493 289 RRGTDVFKALALGASGIF 306 (367)
T ss_pred CcHHHHHHHHHcCCCEEE
Confidence 9999999 7799998664
No 317
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.77 E-value=44 Score=24.66 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
.+.+.+++.|+++.+...+.... +.+...++||+|+.+.. + ... .++.+ ..++|++-+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~--~--~~~---~~~~~~~~~ipvV~i 84 (270)
T cd06296 20 GVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPE--L--TSA---QRAALRRTGIPFVVV 84 (270)
T ss_pred HHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCC--C--ChH---HHHHHhcCCCCEEEE
Confidence 35566777899988776532111 11223479999986532 1 111 23333 456777655
No 318
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=65.29 E-value=37 Score=23.66 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=27.6
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHHH----ccCCCCEEEECCCC
Q 032797 37 TYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGP 78 (133)
Q Consensus 37 ~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~~~~DgvIl~GG~ 78 (133)
.+-+...|+..|+++.-...+ .+.++. ...++|.+.+|+-.
T Consensus 19 ~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 19 AKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCch
Confidence 334567788999998766554 344443 23589999998753
No 319
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.12 E-value=20 Score=27.02 Aligned_cols=38 Identities=5% Similarity=0.050 Sum_probs=24.6
Q ss_pred HHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+++.+...... ..+.+...++||+|+.+.
T Consensus 26 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 26 VAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred HHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 55667778999988765320 112233458999999764
No 320
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.08 E-value=28 Score=26.28 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~G 76 (133)
.+.+.+++.|+.+.+...+. ..+.+...++||+|+.+
T Consensus 28 ~i~~~~~~~gy~~~~~~~~~-~~~~l~~~~vdgiIi~~ 64 (269)
T cd06287 28 AAAESALERGLALCLVPPHE-ADSPLDALDIDGAILVE 64 (269)
T ss_pred HHHHHHHHCCCEEEEEeCCC-chhhhhccCcCeEEEec
Confidence 46677888999998876542 22334445899999865
No 321
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=64.97 E-value=29 Score=29.84 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=42.2
Q ss_pred CeEEEEECC-------------CCchHHHHHHHHhCCCeE--EEEeCCCCC----HHHHccCCCCEEEECCCCCCcC---
Q 032797 25 NPIIVIDNY-------------DSFTYNLCQYMGELGYHF--EVYRNDELT----VEELKRKNPRGVLISPGPGAPQ--- 82 (133)
Q Consensus 25 ~~i~vid~~-------------~~~~~~i~~~l~~~G~~~--~v~~~~~~~----~~~l~~~~~DgvIl~GG~~~~~--- 82 (133)
|+++|||-| +-|...+.-+|+++|.+. +.+..|... ..+.. .+||.+|+-+|...|.
T Consensus 1 m~~~IiDGY~DEPAglGVPPYi~~YpRY~aGAl~~~g~~~~v~Y~tID~lR~~~~~~~~l-~k~d~~V~I~G~~vPGKYl 79 (560)
T COG1031 1 MRAAIIDGYTDEPAGLGVPPYIGPYPRYAAGALKKAGKDVEVDYVTIDRLRENFKTLEIL-NKYDLVVFIAGVTVPGKYL 79 (560)
T ss_pred CceeeeccccCCcccCCCCCcccccHHHHHHHHHHcCCCceeEEEEHHHhhccchhhhhh-hcCCEEEEEeccccCcccc
Confidence 578888754 234445666788886444 333333211 11211 3799999888865443
Q ss_pred -----CchHHHHHHHHhCCCCCEEE
Q 032797 83 -----DSGISLQTVLELGPTVPLFG 102 (133)
Q Consensus 83 -----d~~~~~~~i~~~~~~~PvLG 102 (133)
+.+++..+++.. +++.++|
T Consensus 80 ga~P~tl~E~~~i~~~~-~gvkilG 103 (560)
T COG1031 80 GATPATLEELLRILSIA-DGVKILG 103 (560)
T ss_pred CCCCCCHHHHHHHHHHh-cCcEEec
Confidence 233344444433 3477777
No 322
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=64.96 E-value=29 Score=25.55 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=24.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
+.+++++.|+.+.+........ +.+...++||+|+.+.
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 21 IDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 5566777899988776532111 1223358999999764
No 323
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=64.90 E-value=24 Score=26.06 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+++.+.... .+.+ .+...++||+|+.+.
T Consensus 20 ~i~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 20 AMKEEAKKQKVNLIVSIAN-QDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHhcCCEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3556677789999876543 1211 122358999999653
No 324
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.58 E-value=56 Score=27.06 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=35.5
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc-------------cCCCCEEEECCCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-------------RKNPRGVLISPGPG 79 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~-------------~~~~DgvIl~GG~~ 79 (133)
.+.+|+|+..+.+-. ...+.|.+.|+++...........++. -.++|.||.|+|-.
T Consensus 8 ~~~~i~viG~G~~G~-~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~ 76 (460)
T PRK01390 8 AGKTVAVFGLGGSGL-ATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVP 76 (460)
T ss_pred CCCEEEEEeecHhHH-HHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCC
Confidence 356899998866544 358889999998877653211111110 02589999999853
No 325
>PRK07308 flavodoxin; Validated
Probab=64.36 E-value=44 Score=23.03 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=29.9
Q ss_pred eEEEE-ECCCCchHHHHH----HHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCC
Q 032797 26 PIIVI-DNYDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (133)
Q Consensus 26 ~i~vi-d~~~~~~~~i~~----~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~ 78 (133)
++.|+ ....+.+..+.+ .+++.|.++++.+.+..+..++. ++|.||+ |.|
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~--~~d~vi~-g~~ 57 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFE--DADIAIV-ATY 57 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhc--cCCEEEE-EeC
Confidence 44444 434455665554 45567888887766444444553 6899988 443
No 326
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=64.32 E-value=12 Score=26.83 Aligned_cols=51 Identities=8% Similarity=0.129 Sum_probs=30.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEEC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~ 75 (133)
.+|+++|........+...|+..|+.+............+....+|.+++-
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild 52 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILD 52 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEe
Confidence 478999876566667888888888776543221111122233468888773
No 327
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=64.12 E-value=75 Score=26.52 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=36.7
Q ss_pred cccCCCCCeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCC
Q 032797 18 KKSKNNKNPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGP 78 (133)
Q Consensus 18 ~~~~~~~~~i~vi-d~~~~~~~~i~----~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~ 78 (133)
...+..+ +|+|+ +.--+++..+. +-|.+.|.+++++.....+..++.. .+++|+++ |+|
T Consensus 241 ~~~~~~~-~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vv-GsP 306 (388)
T COG0426 241 AEGQPKG-KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVV-GSP 306 (388)
T ss_pred HccCCcc-eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEE-ecC
Confidence 3444444 67777 32225555544 4566789999988765444555432 37999999 665
No 328
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=63.75 E-value=54 Score=23.75 Aligned_cols=57 Identities=11% Similarity=0.170 Sum_probs=37.1
Q ss_pred cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 20 ~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
-...+.+++|+....-.-..+...|.+.|+.+++.+....+.++.. ...|.||..-|
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~-~~ADIVVsa~G 88 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT-RRADIVVSAVG 88 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH-TTSSEEEE-SS
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee-eeccEEeeeec
Confidence 3467789999987555566788889999999998876534454443 47998887555
No 329
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=63.24 E-value=38 Score=25.01 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+++.+...+.... +.+...++||+|+.+.
T Consensus 20 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 20 RLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 35566778899988876532111 1223458999999775
No 330
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=63.21 E-value=52 Score=25.30 Aligned_cols=76 Identities=11% Similarity=0.139 Sum_probs=46.2
Q ss_pred CCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCC---------CCHHHH-------ccCCCCEEEECCCCCCcCCc
Q 032797 22 NNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDE---------LTVEEL-------KRKNPRGVLISPGPGAPQDS 84 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~---------~~~~~l-------~~~~~DgvIl~GG~~~~~d~ 84 (133)
..-.||.|+--|.... ..+.++|++.|+++.-..... .+.+.+ ...++|+|++++....
T Consensus 118 lg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLr---- 193 (239)
T TIGR02990 118 LGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALR---- 193 (239)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCch----
Confidence 4557999998765553 457788999999886552211 122222 1247999999875321
Q ss_pred hHHHHHHHHh--CCCCCEEEE
Q 032797 85 GISLQTVLEL--GPTVPLFGV 103 (133)
Q Consensus 85 ~~~~~~i~~~--~~~~PvLGI 103 (133)
..+.|.++ +-++||+-.
T Consensus 194 --t~~vi~~lE~~lGkPVlsS 212 (239)
T TIGR02990 194 --AATCAQRIEQAIGKPVVTS 212 (239)
T ss_pred --hHHHHHHHHHHHCCCEEEH
Confidence 22344443 246999874
No 331
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=63.18 E-value=29 Score=28.41 Aligned_cols=54 Identities=9% Similarity=0.223 Sum_probs=32.8
Q ss_pred CCeEEEE-ECCCCchHHHHH----HHH--hCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCC
Q 032797 24 KNPIIVI-DNYDSFTYNLCQ----YMG--ELGYHFEVYRNDELTVEELKR--KNPRGVLISPGP 78 (133)
Q Consensus 24 ~~~i~vi-d~~~~~~~~i~~----~l~--~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~ 78 (133)
..+|+|+ ...-+++..+.+ .++ ..|+++++++..+.+.+++.. .++|++|+ |+|
T Consensus 247 ~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~-Gsp 309 (394)
T PRK11921 247 ENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILV-GSS 309 (394)
T ss_pred cCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-ECC
Confidence 4566655 443455655544 455 457888888765555555432 26999999 554
No 332
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=63.18 E-value=23 Score=26.06 Aligned_cols=58 Identities=21% Similarity=0.379 Sum_probs=32.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
+.+.+++.|+.+.+.... .+.+ .+...++||+|+.+ .. .....+.++.+ ..++|++.+
T Consensus 21 i~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~~~dgii~~~-~~----~~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 21 AQKEAKELGYELTVLDAQ-NDAAKQLNDIEDLITRGVDAIIINP-TD----SDAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred HHHHHHHcCceEEecCCC-CCHHHHHHHHHHHHHcCCCEEEEcC-CC----hHHHHHHHHHHHHCCCcEEEE
Confidence 556677789988876543 2222 12234799999953 21 11122334443 456787766
No 333
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=63.13 E-value=40 Score=25.09 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+.+.+......+. +.+...++||+|+.+.
T Consensus 20 i~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 20 VKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4566778899988763211111 1233458999999763
No 334
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=63.13 E-value=40 Score=30.02 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=48.0
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~ 98 (133)
...++|+++|........+.+.|+..|+.+..........+.+....||.+++--. .|...+ ...+.+++. ....
T Consensus 665 ~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~~dlil~D~~--mp~~~g~~~~~~lr~~~~~~~~ 742 (919)
T PRK11107 665 RLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRPFDLILMDIQ--MPGMDGIRACELIRQLPHNQNT 742 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCcHHHHHHHHHhcccCCCC
Confidence 34578999987555555677888888988765543211122233457998877221 232222 344566653 3578
Q ss_pred CEEEEe
Q 032797 99 PLFGVC 104 (133)
Q Consensus 99 PvLGIC 104 (133)
|++.+-
T Consensus 743 pii~lt 748 (919)
T PRK11107 743 PIIAVT 748 (919)
T ss_pred CEEEEe
Confidence 998873
No 335
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=63.04 E-value=61 Score=24.18 Aligned_cols=58 Identities=10% Similarity=0.227 Sum_probs=32.0
Q ss_pred HHHHHHhCCCeEEEEeCCC-CCH-------HHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 40 LCQYMGELGYHFEVYRNDE-LTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~-~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
+.+.+++.|+++.+..... .+. +.+...++||+|+.+.. ..... .+.++ +.++|++-+
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~-----~~~~~-~~~~~~~~giPvV~~ 87 (268)
T cd06306 21 MVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVS-----PDGLN-EILQQVAASIPVIAL 87 (268)
T ss_pred HHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-----hhhHH-HHHHHHHCCCCEEEe
Confidence 4566778899998875421 111 11223589999997532 11111 23332 567887644
No 336
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=62.85 E-value=49 Score=25.63 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797 23 NKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 23 ~~~~i~vid--~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG 77 (133)
....|.++- ..+.|.. .+.+.+++.|+++.+..... +.+ .+...++||+|+.+.
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILCNAWN-NLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEecC
Confidence 334666553 2223433 34556677899988775431 111 222347999999875
No 337
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.77 E-value=47 Score=24.60 Aligned_cols=39 Identities=15% Similarity=0.374 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+++.+....... .+.+....+||+|+.++
T Consensus 20 ~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 20 GAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred HHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 4566778889998877543211 11122357999999775
No 338
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.73 E-value=39 Score=21.85 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=50.3
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEE--eC-CCCCHHHHcc--CCCCEEEECCCCCCcCCchHHHHHHHH-h-CCCC
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVY--RN-DELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLE-L-GPTV 98 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~--~~-~~~~~~~l~~--~~~DgvIl~GG~~~~~d~~~~~~~i~~-~-~~~~ 98 (133)
+|+||...+.....+.+.+++.|++.... +. .......++. .+.|.||+.=+.- .......+++ . ..++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~v----sH~~~~~vk~~akk~~i 76 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYV----SHNAMWKVKKAAKKYGI 76 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCc----ChHHHHHHHHHHHHcCC
Confidence 47788766677888999999999999887 11 1111111332 3679999854321 1223334444 2 5678
Q ss_pred CEEEEe-chHHHHHHH
Q 032797 99 PLFGVC-MGLQCIGEA 113 (133)
Q Consensus 99 PvLGIC-lG~QlLa~a 113 (133)
|+.=.= .|..-|..+
T Consensus 77 p~~~~~~~~~~~l~~~ 92 (97)
T PF10087_consen 77 PIIYSRSRGVSSLERA 92 (97)
T ss_pred cEEEECCCCHHHHHHH
Confidence 987654 466555444
No 339
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=62.72 E-value=64 Score=25.02 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=30.3
Q ss_pred CeEEEEECCCCchH--------HHHHHHHhCCCeEEEEeCCCCCHHHHcc-CCCCEEEE
Q 032797 25 NPIIVIDNYDSFTY--------NLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLI 74 (133)
Q Consensus 25 ~~i~vid~~~~~~~--------~i~~~l~~~G~~~~v~~~~~~~~~~l~~-~~~DgvIl 74 (133)
|||+|+=.+.|-.+ .+.++|++.|++++.+..+......+.. .++|.++.
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~ 59 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFN 59 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEE
Confidence 57888855544432 3778899999999888654211122211 26887764
No 340
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=62.71 E-value=40 Score=23.71 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=39.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEEe
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGIC 104 (133)
|+++|........+...|+..|+.+............+....+|.+++--. .+...+ ...+.++......|++-+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~--~~~~~g~~~~~~l~~~~~~~~iivls 77 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDDYDLIILDVM--LPGMDGWQILQTLRRSGKQTPVLFLT 77 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHccCCCCcEEEEE
Confidence 467776555566677888888886544322111112233347898887322 121122 2334444334567877764
No 341
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=62.43 E-value=67 Score=25.34 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=44.5
Q ss_pred CCCCeEEEEECCCCc-hHHHHHHHHhC--CCeEEEEeCCC---CCHHHH-------ccC----CCCEEEECCCCCCcCCc
Q 032797 22 NNKNPIIVIDNYDSF-TYNLCQYMGEL--GYHFEVYRNDE---LTVEEL-------KRK----NPRGVLISPGPGAPQDS 84 (133)
Q Consensus 22 ~~~~~i~vid~~~~~-~~~i~~~l~~~--G~~~~v~~~~~---~~~~~l-------~~~----~~DgvIl~GG~~~~~d~ 84 (133)
.-..+|+||-...+- .+.+.+.+++. .+++.++|..- ....++ ... .+|.|||.=|.|+..|-
T Consensus 12 ~~p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL 91 (319)
T PF02601_consen 12 KFPKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDL 91 (319)
T ss_pred CCCCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHh
Confidence 334689999765443 24566666654 45667776531 112221 111 49999997666765543
Q ss_pred hHH--HHHHHHh-CCCCCEE
Q 032797 85 GIS--LQTVLEL-GPTVPLF 101 (133)
Q Consensus 85 ~~~--~~~i~~~-~~~~PvL 101 (133)
..+ ..+.+.+ +..+||+
T Consensus 92 ~~FN~e~varai~~~~~Pvi 111 (319)
T PF02601_consen 92 WAFNDEEVARAIAASPIPVI 111 (319)
T ss_pred cccChHHHHHHHHhCCCCEE
Confidence 221 2334443 5568986
No 342
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=62.20 E-value=51 Score=26.75 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=35.7
Q ss_pred CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchH
Q 032797 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 25 ~~i~vid~~~~-----~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
.|++||-.... +...+.+.|++.|.++.++.-- +.+.+. ....++|.||=-|| |++-|...
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHH
Confidence 68888843222 3345677888889888765311 123332 22348999995566 56666554
No 343
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=62.04 E-value=34 Score=25.53 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC-H-HH----HccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELT-V-EE----LKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~-~-~~----l~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+++.+...+... . +. +....+||+|+.+.
T Consensus 20 ~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 20 GIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4667778889999887654211 1 11 22347999999864
No 344
>PRK09701 D-allose transporter subunit; Provisional
Probab=62.02 E-value=71 Score=24.69 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=29.5
Q ss_pred eEEEE--ECCCCchHH----HHHHHHhCCCeEEEEeCC-CCCH-------HHHccCCCCEEEECCC
Q 032797 26 PIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRND-ELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 26 ~i~vi--d~~~~~~~~----i~~~l~~~G~~~~v~~~~-~~~~-------~~l~~~~~DgvIl~GG 77 (133)
.|.++ +..+.|... +.+.+++.|+++.++..+ ..+. +.+...++||+|+.+.
T Consensus 26 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 26 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 56555 334444333 455667789998876321 1121 1222347999999764
No 345
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=61.96 E-value=35 Score=30.63 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=47.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCC--C-C
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGP--T-V 98 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~--~-~ 98 (133)
...+|+|+|........+.+.|+..|+++..........+.+....||.|++-- ..|...+ ...+.++.... . .
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvl~D~--~mp~~~g~~~~~~ir~~~~~~~~~ 778 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQHAFDLALLDI--NLPDGDGVTLLQQLRAIYGAKNEV 778 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCCCCCEEEECC--CCCCCCHHHHHHHHHhCccccCCC
Confidence 345799998655555667788888999877653311112233345799887732 2333333 34455665422 2 8
Q ss_pred CEEEEec
Q 032797 99 PLFGVCM 105 (133)
Q Consensus 99 PvLGICl 105 (133)
|++.+.-
T Consensus 779 pii~lta 785 (968)
T TIGR02956 779 KFIAFSA 785 (968)
T ss_pred eEEEEEC
Confidence 9998853
No 346
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=61.45 E-value=19 Score=22.29 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=42.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT 97 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~-~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~ 97 (133)
...+++++++........+.+.++..|+. +............+....+|.+++-.. .+...+ ...+.+++. ...
T Consensus 3 ~~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di~l~d~~--~~~~~~~~~~~~l~~~~~~~~ 80 (129)
T PRK10610 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWN--MPNMDGLELLKTIRADGAMSA 80 (129)
T ss_pred cccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccCCCEEEEcCC--CCCCCHHHHHHHHHhCCCcCC
Confidence 34578899987555566677788877764 332222111112233346888777332 111122 233444442 246
Q ss_pred CCEEEEec
Q 032797 98 VPLFGVCM 105 (133)
Q Consensus 98 ~PvLGICl 105 (133)
.|++-++-
T Consensus 81 ~~~i~~~~ 88 (129)
T PRK10610 81 LPVLMVTA 88 (129)
T ss_pred CcEEEEEC
Confidence 78877754
No 347
>PRK09483 response regulator; Provisional
Probab=61.18 E-value=50 Score=23.39 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=41.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
++|+++|........+.+.|+.. ++.+.....+... ...+....+|.+|+--. .+...+ ...+.+++.....|++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~~~~~~ii 79 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMN--MPGIGGLEATRKILRYTPDVKII 79 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHCCCCeEE
Confidence 57899987655566677888764 6665322221111 12233346898777221 111122 2344454444567877
Q ss_pred EEe
Q 032797 102 GVC 104 (133)
Q Consensus 102 GIC 104 (133)
-+.
T Consensus 80 ~ls 82 (217)
T PRK09483 80 MLT 82 (217)
T ss_pred EEe
Confidence 765
No 348
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=61.11 E-value=53 Score=23.17 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=40.7
Q ss_pred cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 20 ~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
-...+.+|+|+......-..+...|.+.|+.+.+.+....+.++.- ...|-||..=|
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v-~~ADIVvsAtg 80 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKV-HDADVVVVGSP 80 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHH-hhCCEEEEecC
Confidence 3567789999987656667788889899999988875433444432 37898776544
No 349
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=60.88 E-value=51 Score=26.72 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=36.5
Q ss_pred CCeEEEEECCCC-chHHHHHHHHhCCCeEEEEeCC-CCCHHH-------HccCCCCEEEECCCCCCcCCchH
Q 032797 24 KNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRND-ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 24 ~~~i~vid~~~~-~~~~i~~~l~~~G~~~~v~~~~-~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
..|++|+--... +...+...|++.|+++.++... +.+.+. ....++|.||--|| |++-|...
T Consensus 22 ~~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK 92 (374)
T cd08183 22 GRRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGK 92 (374)
T ss_pred CCcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHH
Confidence 357877742222 2334667788889887765321 223222 22347999997777 66666554
No 350
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.50 E-value=54 Score=24.69 Aligned_cols=37 Identities=8% Similarity=0.237 Sum_probs=23.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+.+.+.... .+.+ .+...++||+|+.+.
T Consensus 22 i~~~a~~~gy~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 22 VREAAKAIGWNLRILDGR-GSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred HHHHHHHcCcEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 556677789988776443 1221 122358999999763
No 351
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=60.09 E-value=33 Score=26.35 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=32.5
Q ss_pred HHHHHHh--CCCeEEEEeCCCCC------HHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 40 LCQYMGE--LGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 40 i~~~l~~--~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
+.+.+++ .|+++.+.+..... .+.+...++||+|+.+.. + ....+.++++ +.++|+.-+
T Consensus 21 i~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~--~---~~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 21 LEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVD--P---TAAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCc--h---hhHHHHHHHHHHCCCCEEEe
Confidence 5566677 67777776553211 122334589999997632 1 1122334443 457887654
No 352
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.06 E-value=63 Score=24.21 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~G 76 (133)
.+.+.+++.|+++.+...+. +.+ .+...++||+|+.+
T Consensus 20 gi~~~~~~~G~~~~~~~~~~-d~~~~~~~i~~~~~~~vdgiii~~ 63 (272)
T cd06313 20 AADEAGKLLGVDVTWYGGAL-DAVKQVAAIENMASQGWDFIAVDP 63 (272)
T ss_pred HHHHHHHHcCCEEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 35566777899998875532 211 12235799999965
No 353
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=59.43 E-value=72 Score=25.87 Aligned_cols=62 Identities=23% Similarity=0.421 Sum_probs=37.1
Q ss_pred CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchHH
Q 032797 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 25 ~~i~vid~~~~-----~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.|++|+-...+ +...+.+.|++.|+++.++..- +.+.+. ....++|.||=-|| |++-|....
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 57777743222 2345777888889888766421 123322 22358999997777 566666543
No 354
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=59.38 E-value=46 Score=24.22 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=23.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG 77 (133)
+.+++++.|+++.+....... ...+...++||+|+.+.
T Consensus 21 ~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 21 AEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred HHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 445566689999887654211 11222347999999664
No 355
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=59.24 E-value=38 Score=24.81 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
.+.+.+++.|+.+.+........ ..+....+||+|+.++. +.. . +.++.+ +.++|++.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~--~~~-~---~~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 20 GIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVAD--AAT-S---PALDLLDAERVPYVLAY 86 (266)
T ss_pred HHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCC--CCc-h---HHHHHHhhCCCCEEEEe
Confidence 35566777899998876531111 12223579999996542 211 1 123333 4568877664
No 356
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=59.14 E-value=44 Score=24.44 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=23.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+.+.+...+... .+.+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 21 ILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 556677789998877543111 11223458999999764
No 357
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.60 E-value=1.1e+02 Score=25.74 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=31.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH---HHH---------c---cCCCCEEEECCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV---EEL---------K---RKNPRGVLISPGP 78 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~---~~l---------~---~~~~DgvIl~GG~ 78 (133)
.+.+|+|+..+-+- ....+.|.. |+++.+........ .++ . -.++|.||+|+|-
T Consensus 5 ~~~~v~v~G~G~sG-~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI 73 (454)
T PRK01368 5 TKQKIGVFGLGKTG-ISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGI 73 (454)
T ss_pred CCCEEEEEeecHHH-HHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCC
Confidence 35688999875432 346677774 88887765221111 111 0 0258999999984
No 358
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=58.51 E-value=28 Score=22.20 Aligned_cols=70 Identities=10% Similarity=-0.117 Sum_probs=38.2
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~ 93 (133)
...++.-+|..........+..++.+.+++.+..+-...... ...+|.|+.+|+.-...+......++++
T Consensus 23 ~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~-~~~~D~v~~~~~~~~~~~~~~~~~ll~~ 92 (101)
T PF13649_consen 23 PSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS-DGKFDLVVCSGLSLHHLSPEELEALLRR 92 (101)
T ss_dssp --SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH-SSSEEEEEE-TTGGGGSSHHHHHHHHHH
T ss_pred ccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc-CCCeeEEEEcCCccCCCCHHHHHHHHHH
Confidence 347889999743333334445555566666666553334332 2479999997874443444444445544
No 359
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=58.41 E-value=74 Score=25.88 Aligned_cols=61 Identities=18% Similarity=0.366 Sum_probs=35.5
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchH
Q 032797 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 25 ~~i~vid~~~----~~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
.|++|+--.. ++...+...|++.|.++.++.-- +.+.+. ....++|.||--|| |++-|...
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~aK 103 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDTAK 103 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 5787773221 13345677888889888776321 122232 22358999995566 46656554
No 360
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=58.22 E-value=27 Score=28.27 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=31.4
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC----------------------CCCHHHHccCCCCEEEECCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND----------------------ELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~----------------------~~~~~~l~~~~~DgvIl~GG 77 (133)
+..+.+|+|+|++ ..+.|.+.|+++..++.. +.+.+.+...++|.||++|-
T Consensus 55 pknPekVvv~D~g------aLD~ld~lGve~~~v~~~~~~P~yL~~y~~dky~nvGtlfEPD~Eai~a~kPdLIIiggR 127 (320)
T COG4607 55 PKNPEKVVVLDLG------ALDTLDALGVEVVAVGPGKNLPAYLQKYKDDKYANVGTLFEPDYEAIAAAKPDLIIIGGR 127 (320)
T ss_pred cCCCceEEEecch------hhhhHHHhCCccccccCCCCccHHHHHhccCCccccCcccCCCHHHHHhcCCCEEEECcH
Confidence 3555689999973 345677777776655211 12344444458998888554
No 361
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=58.20 E-value=64 Score=24.92 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=23.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECC
Q 032797 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISP 76 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~G 76 (133)
+.+.+++.|+.+.+....... .+.+...++||+|+.+
T Consensus 85 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 85 IESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred HHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 556677789998876543111 1112235899999975
No 362
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=57.51 E-value=46 Score=26.60 Aligned_cols=94 Identities=10% Similarity=0.102 Sum_probs=46.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC--CcC-CchHH---HHHHHHhCCCC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQ-DSGIS---LQTVLELGPTV 98 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~--~~~-d~~~~---~~~i~~~~~~~ 98 (133)
+++++.-++ .....+.+.+++.|+.+...-.............+|+||+-|.-. +.. +.... ...+++. -++
T Consensus 114 ~~~v~~~~G-~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~-~~i 191 (330)
T PF03060_consen 114 PDVVSFGFG-LPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA-VDI 191 (330)
T ss_dssp -SEEEEESS-SC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH--SS
T ss_pred eEEEEeecc-cchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhh-cCC
Confidence 456666653 223678888999998765443321111222345899999976422 222 22223 3344442 239
Q ss_pred CEE---EEechHHHHH-HHhCCeeee
Q 032797 99 PLF---GVCMGLQCIG-EAFGDCAFS 120 (133)
Q Consensus 99 PvL---GIClG~QlLa-~a~GG~v~~ 120 (133)
||+ ||+-|-++.+ .++|+.=..
T Consensus 192 PViaAGGI~dg~~iaaal~lGA~gV~ 217 (330)
T PF03060_consen 192 PVIAAGGIADGRGIAAALALGADGVQ 217 (330)
T ss_dssp -EEEESS--SHHHHHHHHHCT-SEEE
T ss_pred cEEEecCcCCHHHHHHHHHcCCCEee
Confidence 998 7999999774 478876443
No 363
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=57.39 E-value=16 Score=27.75 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=26.6
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCEEEEec
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCM 105 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~--~~~~~PvLGICl 105 (133)
+.|.|.++=|||+.+-..--....+. +..++|++|||-
T Consensus 58 dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss 97 (220)
T COG1214 58 DLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS 97 (220)
T ss_pred HCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH
Confidence 68999999999987644322223332 367899999983
No 364
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=57.35 E-value=26 Score=29.44 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=15.7
Q ss_pred CCCCEEEEechHHHHH----HHhCC
Q 032797 96 PTVPLFGVCMGLQCIG----EAFGD 116 (133)
Q Consensus 96 ~~~PvLGIClG~QlLa----~a~GG 116 (133)
.+..++|+|.|.|.+. ..+|-
T Consensus 158 ~~~kviGlC~~~~~~~~~la~~lg~ 182 (437)
T cd05298 158 PNARILNICDMPIAIMDSMAAILGL 182 (437)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhCC
Confidence 3578999999998764 45553
No 365
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=57.35 E-value=83 Score=23.87 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=29.4
Q ss_pred CCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECC
Q 032797 24 KNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (133)
Q Consensus 24 ~~~i~vi--d~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~G 76 (133)
...|.++ +..+.|.. .+.+.+++.|+.+.+.... .+.+ .+...++||+|+.+
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~-~d~~~~~~~~~~l~~~~~dgiii~~ 90 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ-NNPAKELANVQDLTVRGTKILLINP 90 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3456555 22333433 3556677889999876542 1211 12234799999965
No 366
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=57.30 E-value=40 Score=25.88 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHccC--CCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELT------VEELKRK--NPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~------~~~l~~~--~~DgvIl~GG 77 (133)
.+.+.+++.|+++.+...+... .+.+... ++||+|+.+.
T Consensus 21 gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 21 FMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred HHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 3556677789998877543211 1123345 8999999764
No 367
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=57.12 E-value=44 Score=30.99 Aligned_cols=80 Identities=15% Similarity=0.258 Sum_probs=45.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
..++|+|+|........+.+.|+..|+++..........+.+....+|.|++ .- ..|...+ ...+.++......|++
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlil~-D~-~mp~~~g~~~~~~i~~~~~~~pii 1034 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLIT-DV-NMPNMDGFELTRKLREQNSSLPIW 1034 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCCCCEEEE-eC-CCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4568999986544555677888888988765432111122233447897776 21 1233233 2345555544568888
Q ss_pred EEe
Q 032797 102 GVC 104 (133)
Q Consensus 102 GIC 104 (133)
.+-
T Consensus 1035 ~lt 1037 (1197)
T PRK09959 1035 GLT 1037 (1197)
T ss_pred EEE
Confidence 774
No 368
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=57.09 E-value=53 Score=24.03 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=23.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+.+.+........ +.+...++||+|+.+.
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 21 IEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred HHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 5566777899887765431111 1222357999999764
No 369
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=57.03 E-value=79 Score=25.69 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=36.0
Q ss_pred CCeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchHH
Q 032797 24 KNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 24 ~~~i~vid~~~~-----~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
..|++|+--..+ +...+.+.|++.|+++.++.-- +.+.+. ....++|+||--|| |++-|....
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 104 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDSAKA 104 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHH
Confidence 368887732212 2345777888888887665311 122222 22358999996566 566665543
No 370
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=56.86 E-value=24 Score=28.51 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=27.0
Q ss_pred CCCCEEEECC-CCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 67 KNPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 67 ~~~DgvIl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
..++|+||-| |.|+......+.+.|+++ ++++||.-.
T Consensus 232 ~~~~GiVl~~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~ 270 (335)
T PRK09461 232 QPVKALILRSYGVGNAPQNPALLQELKEASERGIVVVNL 270 (335)
T ss_pred CCCCEEEEccCCCCCCCCCHHHHHHHHHHHHCCCEEEEe
Confidence 4689999977 666655445566777775 778998765
No 371
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=56.75 E-value=84 Score=24.61 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=36.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH-HHHc--cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV-EELK--RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~-~~l~--~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (133)
+.+|+++.........+.++-+..|..+..-++-.-++ .... ...+|.||++. |..+. ..|++. .-++|
T Consensus 71 ~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~D----p~~d~---qAI~EA~~lnIP 143 (249)
T PTZ00254 71 PADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTD----PRTDH---QAIREASYVNIP 143 (249)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeC----CCcch---HHHHHHHHhCCC
Confidence 33566665543333344444445565553322211110 0010 12577787753 33333 355554 56799
Q ss_pred EEEEe
Q 032797 100 LFGVC 104 (133)
Q Consensus 100 vLGIC 104 (133)
+.|||
T Consensus 144 vIal~ 148 (249)
T PTZ00254 144 VIALC 148 (249)
T ss_pred EEEEe
Confidence 99999
No 372
>PRK09581 pleD response regulator PleD; Reviewed
Probab=56.56 E-value=61 Score=25.87 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=43.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHh--CCCCCEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPLF 101 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~--~~~~PvL 101 (133)
++|++++........+.+.|...|+.+............+....+|.+++--. .+... ....+.++.. ...+|++
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQPDIILLDVM--MPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCCCCHHHHHHHHHcCcccCCCCEE
Confidence 47999987666666677888877877764432111122233346898877321 12222 2334555542 2367887
Q ss_pred EE
Q 032797 102 GV 103 (133)
Q Consensus 102 GI 103 (133)
.+
T Consensus 81 ~~ 82 (457)
T PRK09581 81 MV 82 (457)
T ss_pred EE
Confidence 76
No 373
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=56.55 E-value=73 Score=23.02 Aligned_cols=80 Identities=11% Similarity=0.242 Sum_probs=41.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-C-HHHHccCCCCEEEECCCCCCcCC---ch-HHHHHHHHhCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-T-VEELKRKNPRGVLISPGPGAPQD---SG-ISLQTVLELGPT 97 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~-~~~l~~~~~DgvIl~GG~~~~~d---~~-~~~~~i~~~~~~ 97 (133)
+++|+++|........+.+.|...+....+...... . .+.+....+|.+++--. -+.+ .+ ...+.+++....
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~--l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLS--MPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCc--CCCCCCCCHHHHHHHHHHHCCC
Confidence 478999987666666788888765542112222111 1 11223346898887321 1111 12 233444443456
Q ss_pred CCEEEEec
Q 032797 98 VPLFGVCM 105 (133)
Q Consensus 98 ~PvLGICl 105 (133)
.|++-+..
T Consensus 81 ~~iIvls~ 88 (216)
T PRK10840 81 LSIIVLTM 88 (216)
T ss_pred CcEEEEEe
Confidence 78887753
No 374
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=56.53 E-value=70 Score=22.76 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=40.1
Q ss_pred EEEE-ECCCCchHHHHHHHHh-CC-CeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHh----CCCC
Q 032797 27 IIVI-DNYDSFTYNLCQYMGE-LG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL----GPTV 98 (133)
Q Consensus 27 i~vi-d~~~~~~~~i~~~l~~-~G-~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~----~~~~ 98 (133)
|+|+ ....+.+..+.+.+.+ .+ ..+++.+....+..++. ++|.+|+.-+....... ..+.+++..+ -.++
T Consensus 2 i~IiY~S~tGnTe~vA~~Ia~~l~~~~~~i~~~~~~~~~~l~--~~d~ii~gspty~~g~~p~~~~~fl~~l~~~~l~gk 79 (167)
T TIGR01752 2 IGIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASKEDLN--AYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGK 79 (167)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCceEEEEcccCCHhHHh--hCCEEEEEecCCCCCcCcHHHHHHHHHhhcCCCCCC
Confidence 3444 4445667777777755 22 33556655433444554 79998883322111112 2233444432 2467
Q ss_pred CEEEEech
Q 032797 99 PLFGVCMG 106 (133)
Q Consensus 99 PvLGIClG 106 (133)
++.-++.|
T Consensus 80 ~v~~fg~g 87 (167)
T TIGR01752 80 TVALFGLG 87 (167)
T ss_pred EEEEEecC
Confidence 77766654
No 375
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.24 E-value=78 Score=23.37 Aligned_cols=39 Identities=8% Similarity=0.128 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+++.+...+... .+.+....+||+|+.+.
T Consensus 20 gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 20 AVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3556777889998877543111 11223458999999763
No 376
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=56.07 E-value=80 Score=23.29 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+.+.+...+.... +.+....+||+|+.+.
T Consensus 20 g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 20 GVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred HHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 34556777899988765431111 1223458999999764
No 377
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=55.83 E-value=53 Score=24.04 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCeEEEEeCCCC-C----HHHH-ccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDEL-T----VEEL-KRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~-~----~~~l-~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+++.+...+.. . ..++ ....+||+|+.+.
T Consensus 24 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 24 GLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred HHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecC
Confidence 356667788999887764321 1 1112 2246999999765
No 378
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.83 E-value=77 Score=23.31 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=32.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
+.+.+++.|+++.+.... .+.+ .+...++||+|+.+.. . ....+.++.+ +.++|+..+
T Consensus 22 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiii~~~~--~---~~~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 22 FQAAAEEDGVEVIVLDAN-GDVARQAAQVEDLIAQKVDGIILWPTD--G---QAYIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHHhcCCEEEEEcCC-cCHHHHHHHHHHHHHcCCCEEEEecCC--c---cccHHHHHHHHHCCCcEEEe
Confidence 445667789998877543 2221 1223589999996532 1 1111233332 456787654
No 379
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.52 E-value=79 Score=23.23 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=23.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+.+.+...+.... +.+....+||+|+.+.
T Consensus 21 i~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 21 MERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4556777899988776532111 1233357999999764
No 380
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.45 E-value=74 Score=26.70 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=23.7
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEe
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~ 55 (133)
+..+.+|+|+..+.+-. .+.+.|.+.|+++.+..
T Consensus 12 ~~~~~~v~v~G~G~sG~-a~a~~L~~~G~~V~~~D 45 (473)
T PRK00141 12 QELSGRVLVAGAGVSGR-GIAAMLSELGCDVVVAD 45 (473)
T ss_pred cccCCeEEEEccCHHHH-HHHHHHHHCCCEEEEEC
Confidence 34455788988754433 68888888898776654
No 381
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=55.30 E-value=47 Score=24.43 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=52.4
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CH----HH-HccCCCCEEEECCCCCCcCCchHHHHHHHH---
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TV----EE-LKRKNPRGVLISPGPGAPQDSGISLQTVLE--- 93 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~---~~----~~-l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~--- 93 (133)
|+|++.-. ......+.+.|++.|+++..+|.-+. .. .. .....+|.||++-.. ....+.+.++.
T Consensus 2 ~~ilitr~-~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~----av~~~~~~~~~~~~ 76 (249)
T PRK05928 2 MKILVTRP-SPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKN----AVEFLLSALKKKKL 76 (249)
T ss_pred CEEEEeCC-HHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHH----HHHHHHHHHHhcCc
Confidence 55555533 33445688899999998876653211 01 11 122479999996542 22222333321
Q ss_pred -hCCCCCEEEEechHHHHHHHhCCeee
Q 032797 94 -LGPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 94 -~~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
...+.+++.|--.-.-....+|.++.
T Consensus 77 ~~~~~~~~~avG~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 77 KWPKNKKYAAIGEKTALALKKLGGKVV 103 (249)
T ss_pred CCCCCCEEEEECHHHHHHHHHcCCCcc
Confidence 13467787777777777778887654
No 382
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=55.22 E-value=1.1e+02 Score=24.86 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=35.9
Q ss_pred CeEEEE-ECC---CCchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchHH
Q 032797 25 NPIIVI-DNY---DSFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 25 ~~i~vi-d~~---~~~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.|++|+ |.. .++...+...|++.|.++.++..- +.+.+. ....++|.||=-|| |++-|....
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-Gs~iD~aK~ 101 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG-GSSMDVAKL 101 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 577777 321 123345667788888887765321 122222 22358999997777 566666543
No 383
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=55.19 E-value=18 Score=31.50 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCEEEEechHHHHHH
Q 032797 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFGVCMGLQCIGE 112 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~--~~~~PvLGIClG~QlLa~ 112 (133)
++++++|.+.|.++-++.+...+.++ ....+|-.| - + ....++.+++. ..++-++|.|.|-.+++.
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~-r~~~ldDYv-~-~------i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~ 304 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAH-REWGLSTYV-D-A------LKEAVDAVRAITGSRDLNLLGACAGGLTCAA 304 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhh-cCCCHHHHH-H-H------HHHHHHHHHHhcCCCCeeEEEECcchHHHHH
Confidence 56777887888887777654222221 101111110 0 0 01124455554 467889999999998885
No 384
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=55.03 E-value=54 Score=23.78 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=35.6
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
..+.+|+|+..+......+.+.|.+.|+.+.+.........+.. .++|.||.+=|
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l-~~aDiVIsat~ 96 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHT-KQADIVIVAVG 96 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHH-hhCCEEEEcCC
Confidence 56689999987433345588899999988776654322222222 37998886544
No 385
>PRK13337 putative lipid kinase; Reviewed
Probab=54.71 E-value=1e+02 Score=24.10 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=26.8
Q ss_pred HHHHHHhCCCeEEEEeCCC-CCHHH----HccCCCCEEEECCCCCCc
Q 032797 40 LCQYMGELGYHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGAP 81 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~-~~~~~----l~~~~~DgvIl~GG~~~~ 81 (133)
+.+.|++.|++++++.... ....+ ....++|.||+.||-|+.
T Consensus 24 ~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 70 (304)
T PRK13337 24 VLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTL 70 (304)
T ss_pred HHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHH
Confidence 5567888999887664321 12222 222468999999997753
No 386
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=54.60 E-value=62 Score=21.60 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=33.9
Q ss_pred CeEEEE-ECCCCchHH-HH----HHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCC
Q 032797 25 NPIIVI-DNYDSFTYN-LC----QYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 98 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~-i~----~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~ 98 (133)
.+|+++ .+ +.+.+ +. ...++.|.++++-... .+..+....++|.+++++ +.....+.+++...++
T Consensus 4 kkIllvC~~--G~sTSll~~km~~~~~~~gi~~~V~A~~-~~~~~~~~~~~DviLl~P------qi~~~~~~i~~~~~~~ 74 (106)
T PRK10499 4 KHIYLFCSA--GMSTSLLVSKMRAQAEKYEVPVIIEAFP-ETLAGEKGQNADVVLLGP------QIAYMLPEIQRLLPNK 74 (106)
T ss_pred CEEEEECCC--CccHHHHHHHHHHHHHHCCCCEEEEEee-cchhhccccCCCEEEECH------HHHHHHHHHHhhcCCC
Confidence 467766 33 33332 33 3445678888775532 111111223789888743 1111223343332346
Q ss_pred CEEEE
Q 032797 99 PLFGV 103 (133)
Q Consensus 99 PvLGI 103 (133)
||..|
T Consensus 75 pV~~I 79 (106)
T PRK10499 75 PVEVI 79 (106)
T ss_pred CEEEE
Confidence 88765
No 387
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=54.57 E-value=54 Score=26.25 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=41.5
Q ss_pred CeEEEEECCCC---chHHHHHHHHhCCCeEEE--EeCCCCCHHHH-------ccCCCCEEEECCCCCCcCCchHHHHHHH
Q 032797 25 NPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRNDELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVL 92 (133)
Q Consensus 25 ~~i~vid~~~~---~~~~i~~~l~~~G~~~~v--~~~~~~~~~~l-------~~~~~DgvIl~GG~~~~~d~~~~~~~i~ 92 (133)
.|++|+--... +...+.+.|++.|.++.. +..+ .+.+.+ ...++|.||--|| |++-|........
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ia~~- 99 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGE-CTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAVADY- 99 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCc-CCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHHHHH-
Confidence 67777742111 223355667777877542 2222 233322 2348999997777 6777766554433
Q ss_pred HhCCCCCEEEEe
Q 032797 93 ELGPTVPLFGVC 104 (133)
Q Consensus 93 ~~~~~~PvLGIC 104 (133)
.++|++.|-
T Consensus 100 ---~~~P~iaIP 108 (351)
T cd08170 100 ---LGAPVVIVP 108 (351)
T ss_pred ---cCCCEEEeC
Confidence 247877765
No 388
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.19 E-value=65 Score=21.70 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHH----ccCCCCEEEECCCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGP 78 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~~l----~~~~~DgvIl~GG~ 78 (133)
.+...|+..|+++.....+ .+.+++ ...++|.|.+|...
T Consensus 18 ~~~~~l~~~G~~vi~lG~~-vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 18 VIARALRDAGFEVIYTGLR-QTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcccc
Confidence 4567788999999877654 444443 23589999998863
No 389
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=53.77 E-value=87 Score=23.05 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHc----cCCCCEEEECCCCCCc-CCchHHHHHHHHhCC--CCCEE--EEechHH
Q 032797 38 YNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAP-QDSGISLQTVLELGP--TVPLF--GVCMGLQ 108 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~~~~DgvIl~GG~~~~-~d~~~~~~~i~~~~~--~~PvL--GIClG~Q 108 (133)
..+...|+..|+++.....+ .+.+++. ..++|.|-+|-..... ......++.+++... ++|++ |-.+- +
T Consensus 100 ~~v~~~l~~~G~~vi~lG~~-~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~-~ 177 (201)
T cd02070 100 NLVATMLEANGFEVIDLGRD-VPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVN-Q 177 (201)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCC-H
Confidence 34667889999999765544 4555542 3589999997753221 112233445555322 44432 22222 3
Q ss_pred HHHHHhCCeee
Q 032797 109 CIGEAFGDCAF 119 (133)
Q Consensus 109 lLa~a~GG~v~ 119 (133)
.++..+|+..+
T Consensus 178 ~~~~~~GaD~~ 188 (201)
T cd02070 178 EFADEIGADGY 188 (201)
T ss_pred HHHHHcCCcEE
Confidence 46777777644
No 390
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=53.68 E-value=63 Score=21.44 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=33.7
Q ss_pred HHHHHHhCCCeEEEEeC-CC---CCH-HHHcc-CCCCEEEECCCCCCc--CCchHHHHHHHH--hCCCCCEE
Q 032797 40 LCQYMGELGYHFEVYRN-DE---LTV-EELKR-KNPRGVLISPGPGAP--QDSGISLQTVLE--LGPTVPLF 101 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~-~~---~~~-~~l~~-~~~DgvIl~GG~~~~--~d~~~~~~~i~~--~~~~~PvL 101 (133)
-.++|++.|++++.+.. .+ ... +-+.. .++|.||..+.+... .+.+. ..||+ .+.++|++
T Consensus 34 Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg--~~iRR~A~~~~Ip~~ 103 (112)
T cd00532 34 TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDG--TALLRLARLYKIPVT 103 (112)
T ss_pred HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCCh--HHHHHHHHHcCCCEE
Confidence 45677778888776532 11 112 23455 689999987754431 12111 23444 26789986
No 391
>PRK13856 two-component response regulator VirG; Provisional
Probab=53.63 E-value=22 Score=26.14 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=42.3
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEEe
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGIC 104 (133)
+|++++........+...|+..|+.+..........+.+....+|.+++--. .|...+ ...+.++. ....|++-+.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~l~~~i~~-~~~~pii~lt 79 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASETVDVVVVDLN--LGREDGLEIVRSLAT-KSDVPIIIIS 79 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCcEEEEE
Confidence 7899987666666778888888887765432111111223346898877321 122222 22333433 2357887775
Q ss_pred c
Q 032797 105 M 105 (133)
Q Consensus 105 l 105 (133)
-
T Consensus 80 ~ 80 (241)
T PRK13856 80 G 80 (241)
T ss_pred C
Confidence 3
No 392
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=53.62 E-value=96 Score=23.53 Aligned_cols=95 Identities=12% Similarity=-0.019 Sum_probs=59.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC----HH-HHcc-CCCCEEEECCCCCCcCCchHHHHHHHHhC--
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT----VE-ELKR-KNPRGVLISPGPGAPQDSGISLQTVLELG-- 95 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~----~~-~l~~-~~~DgvIl~GG~~~~~d~~~~~~~i~~~~-- 95 (133)
+|+|+|.-.. .....+...++..|.++..+|.-+.. .+ .+.. ..+|.|+++-.. -...+.+.+....
T Consensus 1 ~~~vlvtR~~-~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~----av~~~~~~l~~~~~~ 75 (248)
T COG1587 1 GMRVLVTRPR-EQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPN----AVRFFFEALKEQGLD 75 (248)
T ss_pred CcEEEEeCch-hhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHH----HHHHHHHHHHhhccc
Confidence 3677777653 44556888899999988877653211 11 2221 247999996432 1222222232222
Q ss_pred --CCCCEEEEechHHHHHHHhCCeeeeccC
Q 032797 96 --PTVPLFGVCMGLQCIGEAFGDCAFSAWC 123 (133)
Q Consensus 96 --~~~PvLGIClG~QlLa~a~GG~v~~~~~ 123 (133)
.+.+++.|.-.-.-..+.+|.++...++
T Consensus 76 ~~~~~~i~aVG~~Ta~~l~~~G~~~~~~p~ 105 (248)
T COG1587 76 ALKNKKIAAVGEKTAEALRKLGIKVDFIPE 105 (248)
T ss_pred ccccCeEEEEcHHHHHHHHHhCCCCCcCCC
Confidence 3589999999988889999988776655
No 393
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.52 E-value=1.2e+02 Score=24.95 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~ 56 (133)
+++|+|+..+.+ -....+.|.+.|+.+.+...
T Consensus 5 ~~~~~v~G~g~~-G~~~a~~l~~~g~~v~~~d~ 36 (445)
T PRK04308 5 NKKILVAGLGGT-GISMIAYLRKNGAEVAAYDA 36 (445)
T ss_pred CCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeC
Confidence 457888876532 23457788888888776643
No 394
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=53.40 E-value=75 Score=22.18 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHHc----cCCCCEEEECCCC
Q 032797 38 YNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGP 78 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~~~~DgvIl~GG~ 78 (133)
..+...|+..|+++...-.+ .+.+++. ..++|.|.+|--.
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~lS~~~ 64 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILVSSLY 64 (137)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCcc
Confidence 34667789999999877654 4555542 3589999997643
No 395
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=53.36 E-value=95 Score=23.81 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCCeEEEEE--CCCCchHH----HHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 23 NKNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 23 ~~~~i~vid--~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
....|.++- ..+.|... +.+.+++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 58 ~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 58 RTTTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 334566553 22334333 4456677899988775432111 1123357999999763
No 396
>PRK10651 transcriptional regulator NarL; Provisional
Probab=53.28 E-value=75 Score=22.13 Aligned_cols=84 Identities=11% Similarity=0.075 Sum_probs=41.2
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCC-CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 98 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~ 98 (133)
.....+|++++........+.+.|+.. ++.......+.. ....+....+|.+++--...+ .+.-...+.++......
T Consensus 3 ~~~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~l~~-~~~~~~~~~l~~~~~~~ 81 (216)
T PRK10651 3 NQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPG-MNGLETLDKLREKSLSG 81 (216)
T ss_pred CCcceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCC
Confidence 345578999987555555677777654 343322111100 112233346898877322111 11112334444444457
Q ss_pred CEEEEec
Q 032797 99 PLFGVCM 105 (133)
Q Consensus 99 PvLGICl 105 (133)
|++-++.
T Consensus 82 ~vi~l~~ 88 (216)
T PRK10651 82 RIVVFSV 88 (216)
T ss_pred cEEEEeC
Confidence 8777754
No 397
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.27 E-value=62 Score=23.65 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=23.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-H----HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELT-V----EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~-~----~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+.+.++..+... . +.+....+||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 21 LSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred HHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 556677789998877654211 1 1122357999999754
No 398
>PLN02979 glycolate oxidase
Probab=53.03 E-value=1.3e+02 Score=24.88 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=50.9
Q ss_pred chHHHHHHHHhC-CCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCCch-H---HHHHHHH-hCCCCCEE---EE
Q 032797 36 FTYNLCQYMGEL-GYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSG-I---SLQTVLE-LGPTVPLF---GV 103 (133)
Q Consensus 36 ~~~~i~~~l~~~-G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d~~-~---~~~~i~~-~~~~~PvL---GI 103 (133)
.+..-.++|++. +.++.+--. .+.++. ...++|+|+++|.-|...|.. . .+..+++ +..++||+ ||
T Consensus 210 ltW~dl~wlr~~~~~PvivKgV--~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGI 287 (366)
T PLN02979 210 LSWKDVQWLQTITKLPILVKGV--LTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGV 287 (366)
T ss_pred CCHHHHHHHHhccCCCEEeecC--CCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCc
Confidence 344456677763 554443332 234432 335899999988766433332 1 1223333 35678888 89
Q ss_pred echHHHH-HHHhCCeeee
Q 032797 104 CMGLQCI-GEAFGDCAFS 120 (133)
Q Consensus 104 ClG~QlL-a~a~GG~v~~ 120 (133)
..|..++ |.++|++..-
T Consensus 288 r~G~Di~KALALGAdaV~ 305 (366)
T PLN02979 288 RRGTDVFKALALGASGIF 305 (366)
T ss_pred CcHHHHHHHHHcCCCEEE
Confidence 9999998 7799998664
No 399
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.84 E-value=84 Score=22.96 Aligned_cols=38 Identities=18% Similarity=0.419 Sum_probs=22.7
Q ss_pred HHHHHHhCCCeEEEEeCCC-CC-----HHHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDE-LT-----VEELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~-~~-----~~~l~~~~~DgvIl~GG 77 (133)
+.+++++.|+.+.+..... .. .+.+...++||+|+.+.
T Consensus 21 ~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 21 LEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4556677899887664321 11 11223357999999764
No 400
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=52.66 E-value=22 Score=27.15 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCC------CHHHHccCCCCEEEECCCCCCcC----C-------chHHHHHHHHh-C--CCC
Q 032797 39 NLCQYMGELGYHFEVYRNDEL------TVEELKRKNPRGVLISPGPGAPQ----D-------SGISLQTVLEL-G--PTV 98 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~------~~~~l~~~~~DgvIl~GG~~~~~----d-------~~~~~~~i~~~-~--~~~ 98 (133)
.+..+|+.-+++++..|.... +.+.+ ..||+||||-=..+-. + ...-+++|+++ + .+.
T Consensus 36 ~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L--~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGL 113 (254)
T COG5426 36 PLLKALRGGEYDVTYMPAHDAQEKFPQTMEGL--DAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGL 113 (254)
T ss_pred HHHHHHhCCCcceEEechHHHHHhcchhhhhh--cccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcE
Confidence 477888888888887765321 12223 2799999976322211 0 11235778774 3 344
Q ss_pred CEEEEechHHHH
Q 032797 99 PLFGVCMGLQCI 110 (133)
Q Consensus 99 PvLGIClG~QlL 110 (133)
=++|=-+.+|-|
T Consensus 114 LMiGGY~SF~GI 125 (254)
T COG5426 114 LMIGGYLSFQGI 125 (254)
T ss_pred EEEccEEEEeee
Confidence 445545555544
No 401
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=52.54 E-value=74 Score=23.84 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=33.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHccC-CCCEEEECCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRK-NPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~-~~v~~~~~~~~~~l~~~-~~DgvIl~GG 77 (133)
.+..||.-||....-...+.+..++.|++ ++++.-+ .++.+... .+|+++|.||
T Consensus 56 ~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~--Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 56 GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD--APEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc--chHhhcCCCCCCEEEECCC
Confidence 44567777776544455566777777754 4555443 23344333 6999999887
No 402
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=52.49 E-value=77 Score=22.06 Aligned_cols=79 Identities=11% Similarity=0.179 Sum_probs=41.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~~~~~Pv 100 (133)
+.+|+++|........+...+... ++.+.....+... ...+....+|.+++--. .+. +.....+.++......|+
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDID--LPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHhCCCCcE
Confidence 467899987666666677778765 4554322222111 12223346898877322 122 222234445543345787
Q ss_pred EEEe
Q 032797 101 FGVC 104 (133)
Q Consensus 101 LGIC 104 (133)
+.+-
T Consensus 81 i~ls 84 (210)
T PRK09935 81 LFLS 84 (210)
T ss_pred EEEE
Confidence 7664
No 403
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=52.43 E-value=61 Score=27.44 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=55.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVP 99 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~P 99 (133)
...+|+++|-.......+.+.|...|+.+............+....+|-|++.=. .|.-++ .+...++.. ...+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~--mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDAN--MPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCCCcEEEEecC--CCccCHHHHHHHHhccccccccc
Confidence 5578999986545556788889999987765533211122233347998888332 233233 334455553 46899
Q ss_pred EEEEec----hHHHHHHHhCCe
Q 032797 100 LFGVCM----GLQCIGEAFGDC 117 (133)
Q Consensus 100 vLGICl----G~QlLa~a~GG~ 117 (133)
++.+-- ..+.-|-..|+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~ 230 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVN 230 (435)
T ss_pred EEEEecccchHHHHHHHHcCCc
Confidence 999863 344555566664
No 404
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=52.28 E-value=37 Score=26.33 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=33.8
Q ss_pred EEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEech--------------------HHHHHHHhCCeeeec
Q 032797 71 GVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG--------------------LQCIGEAFGDCAFSA 121 (133)
Q Consensus 71 gvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG--------------------~QlLa~a~GG~v~~~ 121 (133)
.|++|.|..+.. .....+.++.+ ..+++++.|.+| +|-||..-||+....
T Consensus 168 iIllTDG~~~~~-~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~ 238 (296)
T TIGR03436 168 LIVISDGGDNRS-RDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV 238 (296)
T ss_pred EEEEecCCCcch-HHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecc
Confidence 566777743321 12233455554 578999999986 888999999997653
No 405
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=52.06 E-value=1.2e+02 Score=24.84 Aligned_cols=61 Identities=15% Similarity=0.342 Sum_probs=35.5
Q ss_pred CeEEEEECC----CCchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchH
Q 032797 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 25 ~~i~vid~~----~~~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
.|++||--. .++...+.+.|++.|+++.++.-- +.+.+. +...++|.||--|| |++-|...
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK 95 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG-GSPMDAAK 95 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHH
Confidence 577777311 124455777888889887766421 122222 22358999995565 46556544
No 406
>PRK13557 histidine kinase; Provisional
Probab=52.05 E-value=86 Score=25.63 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=45.1
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccC-CCCEEEECCCCCCcC--CchHHHHHHHHhCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQ--DSGISLQTVLELGPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~-~~DgvIl~GG~~~~~--d~~~~~~~i~~~~~~~ 98 (133)
..+.+|++++........+.+.|+..|+.+..........+.+... .+|.+++--. .+. +.-...+.++......
T Consensus 413 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~--~~~~~~~~~~~~~l~~~~~~~ 490 (540)
T PRK13557 413 GGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLI--MPGGMNGVMLAREARRRQPKI 490 (540)
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEecc--CCCCCCHHHHHHHHHHhCCCC
Confidence 3456899998766666678888888888776443211011223222 4887777322 221 1223344555544567
Q ss_pred CEEEEe
Q 032797 99 PLFGVC 104 (133)
Q Consensus 99 PvLGIC 104 (133)
|++-+.
T Consensus 491 ~ii~~~ 496 (540)
T PRK13557 491 KVLLTT 496 (540)
T ss_pred cEEEEc
Confidence 777664
No 407
>PLN02884 6-phosphofructokinase
Probab=51.89 E-value=14 Score=30.99 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=26.9
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE-------------echHHHHHH
Q 032797 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 112 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI-------------ClG~QlLa~ 112 (133)
.+.|++|+-||.++-.....+.+..++...++|+.|| |+|+.--+.
T Consensus 142 ~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~ 200 (411)
T PLN02884 142 RGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVE 200 (411)
T ss_pred cCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHH
Confidence 4678888888865433333332333322334888888 888875533
No 408
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=51.41 E-value=47 Score=24.62 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=31.5
Q ss_pred HHHHHHhC-CCeEEEEeCCCCC------HHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 40 LCQYMGEL-GYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 40 i~~~l~~~-G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
+.+.+.+. |+++.+....... .+.+...++||||+.+.. +.... +.++.+ ..++|+.-+.
T Consensus 21 i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~--~~~~~---~~~~~~~~~~ipvV~~~ 88 (270)
T cd06308 21 IQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNE--AAPLT---PVVEEAYRAGIPVILLD 88 (270)
T ss_pred HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCc--hhhch---HHHHHHHHCCCCEEEeC
Confidence 45566665 8888876543111 111223589999997642 21111 223332 4567776553
No 409
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=51.30 E-value=80 Score=21.90 Aligned_cols=65 Identities=22% Similarity=0.152 Sum_probs=33.9
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 35 SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 35 ~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
|.+.+-.+.+++.|.+....+.+..+..++ +.|.++++-..|.=.......+++...++ -+.||+
T Consensus 5 S~TGNte~fv~~lg~~~~~i~~~~~d~~~~---~~~~vliTyT~G~G~vP~~~~~Fle~~~n--~~~gV~ 69 (125)
T TIGR00333 5 SKTGNVQRFVEKLGFQHIRIPVDETDDIHV---DQEFVLITYTGGFGAVPKQTISFLNKKHN--LLRGVA 69 (125)
T ss_pred cccccHHHHHHHcCCCcEEeecCCcchhhc---CCCEEEEecCCCCCcCCHHHHHHHHhhhh--cEEEEE
Confidence 444455556777887765444432222222 68888886544331122344566655443 455554
No 410
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=51.14 E-value=28 Score=28.62 Aligned_cols=35 Identities=20% Similarity=0.505 Sum_probs=25.1
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEechH
Q 032797 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 107 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIClG~ 107 (133)
...|-|++.||-|+.. +.......++|+|||--|-
T Consensus 99 ~gVdlIvfaGGDGTar------DVa~av~~~vPvLGipaGv 133 (355)
T COG3199 99 RGVDLIVFAGGDGTAR------DVAEAVGADVPVLGIPAGV 133 (355)
T ss_pred cCceEEEEeCCCccHH------HHHhhccCCCceEeecccc
Confidence 4799999999977542 2233347789999998764
No 411
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=50.95 E-value=97 Score=27.55 Aligned_cols=43 Identities=16% Similarity=-0.062 Sum_probs=26.8
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHHH----c---cCCCCEEEECCCCC
Q 032797 37 TYNLCQYMGELGYHFEVYRNDELTVEEL----K---RKNPRGVLISPGPG 79 (133)
Q Consensus 37 ~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~---~~~~DgvIl~GG~~ 79 (133)
...+...+++.|+++..+..-..+.+.+ . ..++|.||++||.+
T Consensus 211 ~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts 260 (659)
T PLN02699 211 RAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVS 260 (659)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 4457788999999876543211122222 1 12689999999965
No 412
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=50.59 E-value=1.2e+02 Score=25.19 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=43.3
Q ss_pred CCeEEEEECCCCc-hHHHHHHHHhC--CCeEEEEeCCC---CCHHHH-------ccCCCCEEEECCCCCCcCCchHH--H
Q 032797 24 KNPIIVIDNYDSF-TYNLCQYMGEL--GYHFEVYRNDE---LTVEEL-------KRKNPRGVLISPGPGAPQDSGIS--L 88 (133)
Q Consensus 24 ~~~i~vid~~~~~-~~~i~~~l~~~--G~~~~v~~~~~---~~~~~l-------~~~~~DgvIl~GG~~~~~d~~~~--~ 88 (133)
+.+|+||-...+- .+.+.+.+++. ++++.++|..- ....++ ....+|.|||.=|.|+..|--.+ .
T Consensus 135 p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e 214 (438)
T PRK00286 135 PKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDE 214 (438)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcH
Confidence 4789999765443 24466666553 46777777531 112222 11237999987666665443211 2
Q ss_pred HHHHHh-CCCCCEE
Q 032797 89 QTVLEL-GPTVPLF 101 (133)
Q Consensus 89 ~~i~~~-~~~~PvL 101 (133)
.+.+.+ +..+||+
T Consensus 215 ~v~~ai~~~~~Pvi 228 (438)
T PRK00286 215 AVARAIAASRIPVI 228 (438)
T ss_pred HHHHHHHcCCCCEE
Confidence 334442 5568986
No 413
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=50.56 E-value=39 Score=27.56 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=42.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
++++|+|+.-.....+...|.+.|...-.+.......+.+....+|.+++ -= --|++.+ ++.+.++.....+|+.-|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifl-dI-~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFL-DI-VMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcCCCEEEE-Ee-ecCCccHHHHHHHHHHhhccCcEEEE
Confidence 57899997544455667778888832222211112233444457898776 11 1233333 234455555667888777
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
-
T Consensus 79 s 79 (361)
T COG3947 79 S 79 (361)
T ss_pred e
Confidence 5
No 414
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=50.53 E-value=1.3e+02 Score=24.16 Aligned_cols=62 Identities=13% Similarity=0.267 Sum_probs=35.7
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchHH
Q 032797 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 25 ~~i~vid~~~----~~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.+++|+-... .+...+.+.|++.|.++.++... +.+.+. ....++|.||--|| |++-|....
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 5777773222 23345777888888887765321 123332 22347999996566 566565543
No 415
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=50.39 E-value=97 Score=24.41 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=39.2
Q ss_pred CCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCC-CCH-------HHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 24 KNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDE-LTV-------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 24 ~~~i~vi--d~~~~~~~----~i~~~l~~~G~~~~v~~~~~-~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
..+|.++ +..+.|.. .+.+.+++.|+++.+..... .+. +.+...++||||+.+.. + ....+
T Consensus 46 t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~--~---~~~~~ 120 (343)
T PRK10936 46 AWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVT--P---DGLNP 120 (343)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC--h---HHhHH
Confidence 4566655 32233332 35566777899988875321 111 12234579999997532 1 21222
Q ss_pred HHHHhCCCCCEEEE
Q 032797 90 TVLELGPTVPLFGV 103 (133)
Q Consensus 90 ~i~~~~~~~PvLGI 103 (133)
.+...+.++|+.-+
T Consensus 121 ~l~~~~~giPvV~~ 134 (343)
T PRK10936 121 DLELQAANIPVIAL 134 (343)
T ss_pred HHHHHHCCCCEEEe
Confidence 23112567888644
No 416
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=50.29 E-value=57 Score=23.55 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=30.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
+.+++++.|+++.+...+ .+.+ .+...++|++|+.+...+ .. . ++.+ +.++|+..+
T Consensus 21 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~iii~~~~~~-----~~-~-~~~~~~~~ipvv~~ 84 (264)
T cd06267 21 IEEAAREAGYSVLLCNSD-EDPEKEREALELLLSRRVDGIILAPSRLD-----DE-L-LEELAALGIPVVLV 84 (264)
T ss_pred HHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcCcCEEEEecCCcc-----hH-H-HHHHHHcCCCEEEe
Confidence 444556678888877554 2211 122347899998665321 11 1 3332 456777665
No 417
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=50.25 E-value=1.1e+02 Score=23.36 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=30.1
Q ss_pred CCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 24 KNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 24 ~~~i~vid--~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
...|.++- ..+.|.. .+.+.+++.|+.+.+........ +.+....+||+|+.+.
T Consensus 61 ~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 61 TRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34566552 2233433 34556677899988765431111 1122358999999764
No 418
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=50.24 E-value=32 Score=27.92 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=22.9
Q ss_pred cCCCCEEEECCCCCCcCCch--------HHHHHHHHh-CCCCCEEEEe
Q 032797 66 RKNPRGVLISPGPGAPQDSG--------ISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 66 ~~~~DgvIl~GG~~~~~d~~--------~~~~~i~~~-~~~~PvLGIC 104 (133)
..++|.||++| +.+|.. ...+.++.+ ..++|++.|=
T Consensus 38 ~~~vD~vliAG---DlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~ 82 (390)
T COG0420 38 EEKVDFVLIAG---DLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIA 82 (390)
T ss_pred HccCCEEEEcc---ccccCCCCCHHHHHHHHHHHHHhccCCCcEEEec
Confidence 34789999976 333321 234566665 5789999874
No 419
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=50.20 E-value=1e+02 Score=25.11 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=46.4
Q ss_pred HHHHH-hCCCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCCchH----HHHHHHH-hCCCCCEE---EEechHH
Q 032797 41 CQYMG-ELGYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSGI----SLQTVLE-LGPTVPLF---GVCMGLQ 108 (133)
Q Consensus 41 ~~~l~-~~G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d~~~----~~~~i~~-~~~~~PvL---GIClG~Q 108 (133)
.++++ ..+.++.+--. .+.++. ....+|+|+++|--|...|... .+..+++ ...+.||+ ||..|.-
T Consensus 217 i~~~~~~~~~pvivKgv--~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~D 294 (356)
T PF01070_consen 217 IEWIRKQWKLPVIVKGV--LSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLD 294 (356)
T ss_dssp HHHHHHHCSSEEEEEEE---SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHH
T ss_pred HHHHhcccCCceEEEec--ccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHH
Confidence 34444 46777665444 344443 3458999999865444344332 2334444 46789998 7999998
Q ss_pred HH-HHHhCCeeeec
Q 032797 109 CI-GEAFGDCAFSA 121 (133)
Q Consensus 109 lL-a~a~GG~v~~~ 121 (133)
++ +.++|++..-.
T Consensus 295 v~kalaLGA~~v~i 308 (356)
T PF01070_consen 295 VAKALALGADAVGI 308 (356)
T ss_dssp HHHHHHTT-SEEEE
T ss_pred HHHHHHcCCCeEEE
Confidence 88 88999987643
No 420
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=50.03 E-value=1.2e+02 Score=23.44 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=23.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG 77 (133)
+.+++++.|+.+.+.... .+.+ .+...++||+|+.+.
T Consensus 86 i~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~ 129 (342)
T PRK10014 86 LTEALEAQGRMVFLLQGG-KDGEQLAQRFSTLLNQGVDGVVIAGA 129 (342)
T ss_pred HHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 556677789988776543 1211 223357999999875
No 421
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=49.60 E-value=83 Score=28.16 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=45.2
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
.+.+|+|+|........+...|+..|+.+..........+.+.. ..||.|++-= ..|...+ ...+.++......|+
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~--~mp~~~G~~~~~~lr~~~~~~~i 757 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDF--DLPDYDGITLARQLAQQYPSLVL 757 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeC--CCCCCCHHHHHHHHHhhCCCCCE
Confidence 45689999875555556777888889887654321111122322 3589887721 1233233 234455554456888
Q ss_pred EEEe
Q 032797 101 FGVC 104 (133)
Q Consensus 101 LGIC 104 (133)
+.+=
T Consensus 758 i~~t 761 (914)
T PRK11466 758 IGFS 761 (914)
T ss_pred EEEe
Confidence 7663
No 422
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=49.56 E-value=70 Score=27.19 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=34.8
Q ss_pred CCCCeEEEEECCC-C--c-hH----HHHHHHHhCCCeEEEEeCCCC-CHHH----HccCCCCEEEECCCCCCc
Q 032797 22 NNKNPIIVIDNYD-S--F-TY----NLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAP 81 (133)
Q Consensus 22 ~~~~~i~vid~~~-~--~-~~----~i~~~l~~~G~~~~v~~~~~~-~~~~----l~~~~~DgvIl~GG~~~~ 81 (133)
..++|++||-|.- + - .. .+...|++.|++++++..... ...+ +....||+||+.||-|..
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTl 181 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGIL 181 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHH
Confidence 3456777775422 1 1 11 244478889998877654211 1222 222479999999997753
No 423
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=49.49 E-value=88 Score=28.21 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=44.1
Q ss_pred CeEEEEECCCC--c----hHHHHHHHHhCCCeEEEEeCCCCCHHHH--ccCCCCEEEECCCCCCcCCchHHHHHHHHhCC
Q 032797 25 NPIIVIDNYDS--F----TYNLCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLELGP 96 (133)
Q Consensus 25 ~~i~vid~~~~--~----~~~i~~~l~~~G~~~~v~~~~~~~~~~l--~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~ 96 (133)
|++++|+..-+ + .+.+.+.|++.|+++...... .+...+ ...+.+++|++= .+. ...+.+.+++...
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~ 75 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNS-VDLLKFIEHNPRICGVIFDW--DEY--SLDLCSDINQLNE 75 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCH-HHHHHHHhcccceeEEEEec--ccc--hHHHHHHHHHhCC
Confidence 46777754322 1 235777888899988765432 112121 123788999972 111 1235566777778
Q ss_pred CCCEEEE
Q 032797 97 TVPLFGV 103 (133)
Q Consensus 97 ~~PvLGI 103 (133)
++||+-.
T Consensus 76 ~~Pv~~~ 82 (713)
T PRK15399 76 YLPLYAF 82 (713)
T ss_pred CCCEEEE
Confidence 8999983
No 424
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=49.36 E-value=13 Score=30.05 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=22.7
Q ss_pred ccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 032797 65 KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 65 ~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (133)
...+.|++|+-||.++-.....+.+.+++-..++|+.||
T Consensus 89 ~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigi 127 (338)
T cd00363 89 KKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGL 127 (338)
T ss_pred HHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEe
Confidence 345889999999865443333333443332335666665
No 425
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.15 E-value=82 Score=23.10 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC--HHHH----ccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELT--VEEL----KRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~--~~~l----~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+.+.+...+... .+.+ ....+||+|+.+.
T Consensus 25 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 25 GISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred HHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 3556677789998776543211 1111 2235999999753
No 426
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.96 E-value=98 Score=22.86 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=22.3
Q ss_pred HHHHHHHh-CCCeEEEEeCCC-CCHHHHccCCCCEEEECC
Q 032797 39 NLCQYMGE-LGYHFEVYRNDE-LTVEELKRKNPRGVLISP 76 (133)
Q Consensus 39 ~i~~~l~~-~G~~~~v~~~~~-~~~~~l~~~~~DgvIl~G 76 (133)
.+.+++++ .|+.+.+...+. ...+.+....+||+|+.+
T Consensus 19 gi~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 19 GIARYAREHGPWSIYLEPRGLQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred HHHHHHHhcCCeEEEEecccchhhhhhccccccceEEEEC
Confidence 35667777 677776644321 112233345799999964
No 427
>PRK10403 transcriptional regulator NarP; Provisional
Probab=48.95 E-value=88 Score=21.68 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=40.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCC-CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~P 99 (133)
....+|++++........+...++. .++.......+.. ....+....+|.+++--.... .+.-...+.++......|
T Consensus 4 ~~~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~~~~~~~~l~~~~~~~~ 82 (215)
T PRK10403 4 ATPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDPDVILLDLNMKG-MSGLDTLNALRRDGVTAQ 82 (215)
T ss_pred ceeEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhcCCCEEEEecCCCC-CcHHHHHHHHHHhCCCCe
Confidence 3446899998765556667777764 4555432222111 112233346898887332111 111223344444334567
Q ss_pred EEEEe
Q 032797 100 LFGVC 104 (133)
Q Consensus 100 vLGIC 104 (133)
++-+.
T Consensus 83 ii~l~ 87 (215)
T PRK10403 83 IIILT 87 (215)
T ss_pred EEEEe
Confidence 66554
No 428
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=48.46 E-value=79 Score=21.00 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=31.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-h-CCCCCEEEE
Q 032797 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-L-GPTVPLFGV 103 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~-~~~~PvLGI 103 (133)
+.+.+++.|.++++........++. ..++|.+++++ . .....+.+++ . ..++|+--|
T Consensus 20 m~~~a~~~gi~~~i~a~~~~e~~~~-~~~~Dvill~P--Q----v~~~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 20 LNKGAKERGVPLEAAAGAYGSHYDM-IPDYDLVILAP--Q----MASYYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred HHHHHHHCCCcEEEEEeeHHHHHHh-ccCCCEEEEcC--h----HHHHHHHHHHHhhhcCCCEEEe
Confidence 4556777899888775431122222 23799777744 1 1112334444 3 457888644
No 429
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=48.04 E-value=1.2e+02 Score=24.52 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=35.1
Q ss_pred CeEEEEECCCC----chHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchH
Q 032797 25 NPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 25 ~~i~vid~~~~----~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
.|++|+-.... +...+.+.|++.|.++.++... +.+.+. ....++|.||=-|| |++-|...
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AK 97 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAK 97 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHH
Confidence 57887742222 3344677888889887766321 122222 22358999995566 56656544
No 430
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=48.02 E-value=80 Score=25.91 Aligned_cols=76 Identities=20% Similarity=0.372 Sum_probs=40.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEEe
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGIC 104 (133)
|+|+|....+...+.+.|+..|+.+............+....+|.+++--. .|...+ ...+.++......|++-+.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlVllD~~--~p~~~g~~ll~~l~~~~~~~~vIvlt 77 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVR--MPGEDGLDLLPQIKKRHPQLPVIVMT 77 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHHhCCCCeEEEEe
Confidence 467776555666678888888887754432100112223346888777221 122222 2344455444567877765
No 431
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=47.99 E-value=55 Score=24.83 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=32.2
Q ss_pred CCCCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECCC
Q 032797 22 NNKNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vi--d~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG 77 (133)
.....|.++ +..+.|-. .+.+++++.|+++.+...+... .+.+...++||||+.+.
T Consensus 33 ~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 33 NESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred CCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 344566655 23333433 3556677789998876653211 11223458999999764
No 432
>PRK08227 autoinducer 2 aldolase; Validated
Probab=47.80 E-value=42 Score=26.41 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=33.4
Q ss_pred HhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEech
Q 032797 45 GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG 106 (133)
Q Consensus 45 ~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIClG 106 (133)
.++|+++.=+++...++.++-...+--||+.|||.. ++.++++.++. ++.+ --|||.|
T Consensus 168 aELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~--~~~~~L~~v~~ai~aG--a~Gv~~G 226 (264)
T PRK08227 168 AEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKL--PERDALEMCYQAIDEG--ASGVDMG 226 (264)
T ss_pred HHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCC--CHHHHHHHHHHHHHcC--Cceeeec
Confidence 457887766655422233333335568999999875 33445555555 3433 2677766
No 433
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=47.55 E-value=54 Score=18.85 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=37.0
Q ss_pred EEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 29 VIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 29 vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
+++....+...+...++..|..+............+....+|.+++...- ...+.....+.++......|++-+.
T Consensus 2 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~-~~~~~~~~~~~l~~~~~~~~~i~~~ 76 (113)
T cd00156 2 IVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMM-PGMDGLELLRRIRKRGPDIPIIFLT 76 (113)
T ss_pred eecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhCCCCEEEEecCC-CCCchHHHHHHHHHhCCCCCEEEEE
Confidence 44544444555667777778776544321111222333468888773321 1112222334444434567887765
No 434
>PRK09526 lacI lac repressor; Reviewed
Probab=47.47 E-value=1.3e+02 Score=23.20 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=22.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEEC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLIS 75 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~ 75 (133)
+.+.+++.|+.+.+...+..+. +.+...++||+|+.
T Consensus 85 i~~~a~~~g~~~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 85 IKSRADQLGYSVVISMVERSGVEACQAAVNELLAQRVSGVIIN 127 (342)
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 5566777899998865432111 12334589999995
No 435
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=47.43 E-value=1e+02 Score=24.72 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=24.9
Q ss_pred CCCCEEEECC-CCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 67 KNPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 67 ~~~DgvIl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
..++||||-| |.|+... .+.+.++++ ++++||.-.
T Consensus 234 ~~~~GlVl~~~G~Gn~p~--~~~~~l~~a~~~gipVV~~ 270 (323)
T smart00870 234 SGAKGLVLEGTGAGNVPP--DLLEALKEALERGIPVVRT 270 (323)
T ss_pred CCCCEEEEEeeCCCCCCH--HHHHHHHHHHHCCCEEEEe
Confidence 4789999966 5555432 466777774 778999876
No 436
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=47.22 E-value=83 Score=26.69 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCeEEEE-ECCCCchHHHHH----HHHhC--CCeEEEEeCCCCCHHHHcc--CCCCEEEECCCC
Q 032797 24 KNPIIVI-DNYDSFTYNLCQ----YMGEL--GYHFEVYRNDELTVEELKR--KNPRGVLISPGP 78 (133)
Q Consensus 24 ~~~i~vi-d~~~~~~~~i~~----~l~~~--G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~ 78 (133)
..+|+|+ ...-+++..+.+ .+++. |+++++.+....+.+++.. .++|+|++ |.|
T Consensus 251 ~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vil-Gsp 313 (479)
T PRK05452 251 EDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLV-GSS 313 (479)
T ss_pred cCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEE-ECC
Confidence 3456555 433455655444 45555 5677877766556666542 26999999 554
No 437
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=47.12 E-value=1.2e+02 Score=24.09 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=42.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCC-CHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
.++|+++|....+...+.+.|+.. ++.+.....+.. ....+....+|.+++--. .|...+ ...+.+++... .|+
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~~DlVllD~~--mp~~dgle~l~~i~~~~~-~pi 79 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLNPDVITLDVE--MPVMDGLDALEKIMRLRP-TPV 79 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhCCCEEEEeCC--CCCCChHHHHHHHHHhCC-CCE
Confidence 468999987555555677777664 666543322211 112233346898777221 222222 23344444333 899
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-++-
T Consensus 80 Ivls~ 84 (354)
T PRK00742 80 VMVSS 84 (354)
T ss_pred EEEec
Confidence 98874
No 438
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=47.09 E-value=56 Score=21.06 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=45.7
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC-CCHHHHccC-CCCEEEECCCCCCcCCch-HHHHHHHHhCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRK-NPRGVLISPGPGAPQDSG-ISLQTVLELGPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~-~~~~~l~~~-~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~ 98 (133)
....+|+++|........+.+.|+..|..+....... ...+.+... .+|.+++--. -|.-.+ ...+.++......
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~--mp~~~G~~~~~~l~~~~~~~ 80 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDIN--MPGMDGIELLRRLRARGPNI 80 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhCCCCC
Confidence 3567899998744445567788888896665543221 112223333 3898776322 122122 2334444433568
Q ss_pred CEEEEechHHHH
Q 032797 99 PLFGVCMGLQCI 110 (133)
Q Consensus 99 PvLGIClG~QlL 110 (133)
|+ -+.-|....
T Consensus 81 pv-v~~t~~~~~ 91 (130)
T COG0784 81 PV-ILLTAYADE 91 (130)
T ss_pred CE-EEEEcCcCH
Confidence 85 555554433
No 439
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=47.03 E-value=61 Score=24.65 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCe-EEEEeCCCCCH-------HHHccCCCCEEEECC
Q 032797 39 NLCQYMGELGYH-FEVYRNDELTV-------EELKRKNPRGVLISP 76 (133)
Q Consensus 39 ~i~~~l~~~G~~-~~v~~~~~~~~-------~~l~~~~~DgvIl~G 76 (133)
.+.+.+++.|.. +.+......+. +.+...++||||+.+
T Consensus 19 gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~ 64 (302)
T TIGR02637 19 GAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISA 64 (302)
T ss_pred HHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 355667778843 33321111111 122235899999965
No 440
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=46.83 E-value=1.1e+02 Score=22.33 Aligned_cols=52 Identities=10% Similarity=0.226 Sum_probs=29.8
Q ss_pred CCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCC-CHHHHccCCCCEEEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDEL-TVEELKRKNPRGVLI 74 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~-~~~~l~~~~~DgvIl 74 (133)
+.++|+++|....+...+...|.. .++.......+.. ..+.+....+|.+|+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~pdlvll 56 (225)
T PRK10046 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILL 56 (225)
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEE
Confidence 357899998765556667777775 4664332222211 122233346898887
No 441
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=46.76 E-value=87 Score=21.02 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=29.4
Q ss_pred eEEEE---ECCCCchHHHHHHHHhCCCeEEEEeCCC---------CCHHHHccCCCCEEEECC
Q 032797 26 PIIVI---DNYDSFTYNLCQYMGELGYHFEVYRNDE---------LTVEELKRKNPRGVLISP 76 (133)
Q Consensus 26 ~i~vi---d~~~~~~~~i~~~l~~~G~~~~v~~~~~---------~~~~~l~~~~~DgvIl~G 76 (133)
+|+|+ ++.+.+.+.+.+.|++.|+++..+.+.. .+..+. +...|.+++.-
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~-p~~iDlavv~~ 63 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEI-PEPIDLAVVCV 63 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGC-SST-SEEEE-S
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCC-CCCCCEEEEEc
Confidence 57777 3345677778899999998777664432 122332 24677777743
No 442
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.55 E-value=89 Score=22.97 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISP 76 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~G 76 (133)
.+.+.+++.|+.+.+...+.... +.+....+||+|+.+
T Consensus 20 gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (265)
T cd06285 20 GIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGD 63 (265)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 45667778899887665432111 112345899999965
No 443
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=46.44 E-value=27 Score=29.60 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=35.0
Q ss_pred CCeEEEEECCCC--------chHHHHHHHHhCCCeEEEEeCCCCC-H----HHHccCCCCEEEECCCCCCc
Q 032797 24 KNPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELT-V----EELKRKNPRGVLISPGPGAP 81 (133)
Q Consensus 24 ~~~i~vid~~~~--------~~~~i~~~l~~~G~~~~v~~~~~~~-~----~~l~~~~~DgvIl~GG~~~~ 81 (133)
..|++|+-|-.. |..+-.-.|.-+|++++++..|... . +.+. ...|.|++.||-|..
T Consensus 60 ~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~-t~~Dii~VaGGDGT~ 129 (535)
T KOG4435|consen 60 PKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVD-TQEDIIYVAGGDGTI 129 (535)
T ss_pred cceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhc-cCCCeEEEecCCCcH
Confidence 357777755322 2223333456689999999876421 1 2222 245999999998753
No 444
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=46.22 E-value=1.5e+02 Score=24.27 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=53.6
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCCch-----HHHHHHHHhCCCCCEE---EE
Q 032797 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSG-----ISLQTVLELGPTVPLF---GV 103 (133)
Q Consensus 35 ~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d~~-----~~~~~i~~~~~~~PvL---GI 103 (133)
+..+.=.+||+..---|.++.-- .+.+|. ...+.+|||+|.=.+--.|.. .+-+.++..+.++||| ||
T Consensus 209 Sl~W~Di~wLr~~T~LPIvvKGi-lt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGV 287 (363)
T KOG0538|consen 209 SLSWKDIKWLRSITKLPIVVKGV-LTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGV 287 (363)
T ss_pred CCChhhhHHHHhcCcCCeEEEee-cccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCc
Confidence 33334456777643223333311 222332 235899999986433223322 2334555568889998 89
Q ss_pred echHHHH-HHHhCCeeeec-cCCcce
Q 032797 104 CMGLQCI-GEAFGDCAFSA-WCHAWK 127 (133)
Q Consensus 104 ClG~QlL-a~a~GG~v~~~-~~~~~g 127 (133)
=.|--++ |.|+|++-.-. ...-||
T Consensus 288 R~G~DVlKALALGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 288 RRGTDVLKALALGAKGVFIGRPIVWG 313 (363)
T ss_pred ccchHHHHHHhcccceEEecCchhee
Confidence 9999999 88999975543 344444
No 445
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=46.14 E-value=1.3e+02 Score=24.56 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=35.3
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCCC--CCHHH-------HccCCCCEEEECCCCCCcCCchHH
Q 032797 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE--LTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 25 ~~i~vid~~~----~~~~~i~~~l~~~G~~~~v~~~~~--~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.|++|+-... ++...+.+.|++.|.++.++.-.. .+.++ ....++|.||=-|| |++-|....
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 97 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLAKI 97 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 5777774221 233346667888898887763211 11221 12347999996666 566665543
No 446
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=45.72 E-value=84 Score=20.50 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=37.9
Q ss_pred CeEEEEECCCCchHH-----HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-h-CCC
Q 032797 25 NPIIVIDNYDSFTYN-----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-L-GPT 97 (133)
Q Consensus 25 ~~i~vid~~~~~~~~-----i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~-~~~ 97 (133)
.+|+++ ++.+.+.+ +.+.+++.|+++++........++.. .++|.+++++- .....+.+++ . +.+
T Consensus 4 ~~ILl~-C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~-~~~Dvill~pq------i~~~~~~i~~~~~~~~ 75 (95)
T TIGR00853 4 TNILLL-CAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKL-DDADVVLLAPQ------VAYMLPDLKKETDKKG 75 (95)
T ss_pred cEEEEE-CCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhc-CCCCEEEECch------HHHHHHHHHHHhhhcC
Confidence 466666 22233322 45567778998887765311122222 47998888542 1112344544 3 346
Q ss_pred CCEEEE
Q 032797 98 VPLFGV 103 (133)
Q Consensus 98 ~PvLGI 103 (133)
+|+--|
T Consensus 76 ipv~~I 81 (95)
T TIGR00853 76 IPVEVI 81 (95)
T ss_pred CCEEEe
Confidence 888765
No 447
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=45.71 E-value=21 Score=29.86 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=29.1
Q ss_pred HccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE-------------echHHHHHH
Q 032797 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 112 (133)
Q Consensus 64 l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI-------------ClG~QlLa~ 112 (133)
+...+.|++|+-||.++-.....+.+.+++..-++|+.|| |+|+.--+.
T Consensus 108 L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~ 169 (403)
T PRK06555 108 LAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAE 169 (403)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHH
Confidence 3345899999999976543333333333332235777776 777765433
No 448
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=45.63 E-value=87 Score=24.34 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCeEEEEeCCC-CCHHHH----ccCCCCEEEECCCCCC
Q 032797 39 NLCQYMGELGYHFEVYRNDE-LTVEEL----KRKNPRGVLISPGPGA 80 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~-~~~~~l----~~~~~DgvIl~GG~~~ 80 (133)
.+.+.|++.|.++++..... ....++ ...++|.||+.||-|+
T Consensus 18 ~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGT 64 (293)
T TIGR03702 18 EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGT 64 (293)
T ss_pred HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChH
Confidence 35567888898887665321 222222 2246899999999774
No 449
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=45.46 E-value=74 Score=25.72 Aligned_cols=76 Identities=17% Similarity=0.089 Sum_probs=41.7
Q ss_pred CeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeC-CCCCHHH-------HccCCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797 25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRN-DELTVEE-------LKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (133)
Q Consensus 25 ~~i~vid~~~~~---~~~i~~~l~~~G~~~~v~~~-~~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~ 93 (133)
.|++||--...+ ...+.+.|++.|.++..... .+.+.+. ....++|.||--|| |++.|......+.
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA~~-- 106 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAVADY-- 106 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHHHHH--
Confidence 677777422122 22345567777776543221 1123222 22347899996676 5666666544433
Q ss_pred hCCCCCEEEEec
Q 032797 94 LGPTVPLFGVCM 105 (133)
Q Consensus 94 ~~~~~PvLGICl 105 (133)
.++|+..|.=
T Consensus 107 --~~~p~i~IPT 116 (366)
T PRK09423 107 --LGVPVVIVPT 116 (366)
T ss_pred --cCCCEEEeCC
Confidence 2588888875
No 450
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=45.45 E-value=93 Score=24.30 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=19.0
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEec
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGICl 105 (133)
.+|.||+.. |..+ ..++++. .-++|+.|||-
T Consensus 157 ~Pd~iii~d----~~~~---~~ai~Ea~kl~IPiIaivD 188 (258)
T PRK05299 157 LPDALFVVD----PNKE---HIAVKEARKLGIPVVAIVD 188 (258)
T ss_pred CCCEEEEeC----CCcc---HHHHHHHHHhCCCEEEEee
Confidence 467777743 2222 2355554 56799999983
No 451
>PRK14072 6-phosphofructokinase; Provisional
Probab=45.44 E-value=17 Score=30.33 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=20.5
Q ss_pred cCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 032797 66 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 66 ~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (133)
..+.|++|+-||.++-.....+.+.+++...++|+.||
T Consensus 101 ~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 101 AHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred HcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEe
Confidence 34788888888865433333333333323334666664
No 452
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=45.42 E-value=1.4e+02 Score=24.20 Aligned_cols=61 Identities=18% Similarity=0.368 Sum_probs=34.4
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchH
Q 032797 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 25 ~~i~vid~~~----~~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
.|++|+--.. ++...+...|++.|.++.++.-. +.+.+. ....++|.||=-|| |++-|...
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 104 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDTCK 104 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 5777773211 13344667788889888766311 122222 22358999995455 45555544
No 453
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=45.40 E-value=1.4e+02 Score=22.81 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=22.0
Q ss_pred HHHHHHhCCCeEEEE-eCCCCCHH-------HHccCCCCEEEECC
Q 032797 40 LCQYMGELGYHFEVY-RNDELTVE-------ELKRKNPRGVLISP 76 (133)
Q Consensus 40 i~~~l~~~G~~~~v~-~~~~~~~~-------~l~~~~~DgvIl~G 76 (133)
+.+.+++.|+++.++ +.+ .+.+ .+...++||+|+.+
T Consensus 21 i~~~a~~~g~~v~~~~~~~-~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 21 AKEAAKELGVDAIYVGPTT-ADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred HHHHHHHhCCeEEEECCCC-CCHHHHHHHHHHHHhcCCCEEEEec
Confidence 445666789998875 332 1211 12234799999965
No 454
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=44.97 E-value=95 Score=24.70 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=48.7
Q ss_pred ccCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-------CchHHHHH
Q 032797 19 KSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-------DSGISLQT 90 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-------d~~~~~~~ 90 (133)
..++...+|.+.+....+. ..+.+.|.+.|+++++++.. ....+. .+.|.+++ |.- ... ..+...-.
T Consensus 136 ~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Ds--a~~~~m-~~vd~Viv-Gad-~v~~nG~v~nkiGT~~lA 210 (301)
T TIGR00511 136 FEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDS--AVRYFM-KEVDHVVV-GAD-AITANGALINKIGTSQLA 210 (301)
T ss_pred HHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehh--HHHHHH-HhCCEEEE-Ccc-EEecCCCEEEHHhHHHHH
Confidence 3445667888887765543 45788899999999988643 222222 25777776 321 111 22222212
Q ss_pred HHHhCCCCCEEEEechHH
Q 032797 91 VLELGPTVPLFGVCMGLQ 108 (133)
Q Consensus 91 i~~~~~~~PvLGIClG~Q 108 (133)
+-.-..++|++-.|--+-
T Consensus 211 ~~Ak~~~vPv~V~a~~~K 228 (301)
T TIGR00511 211 LAAREARVPFMVAAETYK 228 (301)
T ss_pred HHHHHhCCCEEEEcccce
Confidence 222244699998875443
No 455
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=44.85 E-value=21 Score=30.35 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=28.1
Q ss_pred cCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE-------------echHHHHHH
Q 032797 66 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 112 (133)
Q Consensus 66 ~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI-------------ClG~QlLa~ 112 (133)
..+.|.+++-||.++-.....+.+.+++...++|+.|| |+|++--..
T Consensus 174 ~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~ 233 (459)
T PTZ00286 174 RHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVE 233 (459)
T ss_pred HcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHH
Confidence 35788888888866543333344444433344677774 888875533
No 456
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=44.58 E-value=86 Score=20.34 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=31.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-h-CCCCCEEEE
Q 032797 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-L-GPTVPLFGV 103 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~-~~~~PvLGI 103 (133)
+.+.+++.|.++++........++. ..++|.+++++= .....+.+++ . ..++|+.-|
T Consensus 19 i~~~~~~~~~~~~v~~~~~~~~~~~-~~~~Diil~~Pq------v~~~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 19 MKKAAEKRGIDAEIEAVPESELEEY-IDDADVVLLGPQ------VRYMLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred HHHHHHHCCCceEEEEecHHHHHHh-cCCCCEEEEChh------HHHHHHHHHHHhccCCCcEEEc
Confidence 4556777899887766531112222 247998888552 1112334443 2 456887654
No 457
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=44.50 E-value=78 Score=25.28 Aligned_cols=83 Identities=8% Similarity=0.067 Sum_probs=48.1
Q ss_pred cccCCCCCeEEEEECCCCch--HHHHHHHHhCCCeEEEEeCCCCCHHHHc-cCCCCEEEECCCCCCcC-------CchHH
Q 032797 18 KKSKNNKNPIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQ-------DSGIS 87 (133)
Q Consensus 18 ~~~~~~~~~i~vid~~~~~~--~~i~~~l~~~G~~~~v~~~~~~~~~~l~-~~~~DgvIl~GG~~~~~-------d~~~~ 87 (133)
+..++...+|.+.+....+. +...+.|.+.|+++++++.. ....+. ..++|.+++ |.- ... ..+..
T Consensus 146 A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Ds--a~~~~m~~~~vd~Vlv-GAd-~v~~nG~v~nk~GT~ 221 (303)
T TIGR00524 146 AWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDS--MAAYFMQKGEIDAVIV-GAD-RIARNGDVANKIGTY 221 (303)
T ss_pred HHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChh--HHHHHccccCCCEEEE-ccc-EEecCCCEeEhhhHH
Confidence 34456667888877665443 34678899999999888542 222232 226887777 331 111 22222
Q ss_pred -HHHHHHhCCCCCEEEEec
Q 032797 88 -LQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 88 -~~~i~~~~~~~PvLGICl 105 (133)
+..+.+ ..++|++-.|-
T Consensus 222 ~lA~~Ak-~~~vPv~V~a~ 239 (303)
T TIGR00524 222 QLAVLAK-EFRIPFFVAAP 239 (303)
T ss_pred HHHHHHH-HhCCCEEEecc
Confidence 222322 34699998874
No 458
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=44.23 E-value=1.1e+02 Score=22.27 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=39.8
Q ss_pred CCCeEEEE--ECCCCchHHHH----HHHHhCCC---eEEEEeCCCCCHH------HH-ccCCCCEEEECCCCC---CcCC
Q 032797 23 NKNPIIVI--DNYDSFTYNLC----QYMGELGY---HFEVYRNDELTVE------EL-KRKNPRGVLISPGPG---APQD 83 (133)
Q Consensus 23 ~~~~i~vi--d~~~~~~~~i~----~~l~~~G~---~~~v~~~~~~~~~------~l-~~~~~DgvIl~GG~~---~~~d 83 (133)
.+.|++|+ .+++..+..+. +.|++.|. ++++++... .+| .+ ...+||++|..|-.- +++.
T Consensus 9 ~~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPG-A~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~ 87 (158)
T PRK12419 9 TPQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPG-AFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRH 87 (158)
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCc-HHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchh
Confidence 44688888 44444454433 45667784 355554421 111 12 124799998877421 2322
Q ss_pred c---hHHHHHHHH--hCCCCCEE
Q 032797 84 S---GISLQTVLE--LGPTVPLF 101 (133)
Q Consensus 84 ~---~~~~~~i~~--~~~~~PvL 101 (133)
+ ....+-|.+ ++.++||.
T Consensus 88 e~V~~~v~~gl~~vsl~~~~PV~ 110 (158)
T PRK12419 88 EFVAQAVIDGLMRVQLDTEVPVF 110 (158)
T ss_pred HHHHHHHHHHHHHHHhccCCCEE
Confidence 1 112233433 36789974
No 459
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=44.13 E-value=22 Score=30.98 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=20.8
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 032797 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (133)
.+.|++|+-||.++-.....+.+..++...++||.||
T Consensus 163 ~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGI 199 (555)
T PRK07085 163 LKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGV 199 (555)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEE
Confidence 4788888888865443333333333333335666665
No 460
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=44.01 E-value=37 Score=26.23 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=46.1
Q ss_pred cccCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC-------chHH-H
Q 032797 18 KKSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-------SGIS-L 88 (133)
Q Consensus 18 ~~~~~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d-------~~~~-~ 88 (133)
++.++...+|.|++....+. ..+.+.|.+.|+++++++.. ....+...+.|.+++ |- ..... .+.. +
T Consensus 127 a~~~~~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~--~~~~~m~~~vd~Vli-Ga-d~v~~nG~v~nk~Gt~~~ 202 (282)
T PF01008_consen 127 AKKKGKKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDS--AVGYVMPRDVDKVLI-GA-DAVLANGGVVNKVGTLQL 202 (282)
T ss_dssp HHHTTEEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GG--GHHHHHHCTESEEEE-E--SEEETTS-EEEETTHHHH
T ss_pred HHHcCCeEEEEEccCCcchhhhhHHHHhhhcceeEEEEech--HHHHHHHHhCCeeEE-ee-eEEecCCCEeehhhHHHH
Confidence 45556678899998766554 35778899999999988643 233332213887777 32 12222 2222 2
Q ss_pred HHHHHhCCCCCEEEEechHHH
Q 032797 89 QTVLELGPTVPLFGVCMGLQC 109 (133)
Q Consensus 89 ~~i~~~~~~~PvLGIClG~Ql 109 (133)
.++.+ ..++|++-+|--+-+
T Consensus 203 a~~Ak-~~~vPv~v~~~~~K~ 222 (282)
T PF01008_consen 203 ALAAK-EFNVPVYVLAESYKF 222 (282)
T ss_dssp HHHHH-HTT-EEEEE--GGGB
T ss_pred HHHHH-hhCCCEEEEcccccc
Confidence 33322 346999999865433
No 461
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=43.97 E-value=1.5e+02 Score=22.79 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHccCCCCEEEECCC
Q 032797 24 KNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (133)
Q Consensus 24 ~~~i~vi--d~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG 77 (133)
...|.++ +..+.|.. .+.+.+++.|+.+.+...+... .+.+....+||+|+.+.
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 60 SRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3456555 33333433 3555667789999877653211 11123358999999764
No 462
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=43.91 E-value=1.2e+02 Score=23.40 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC-H----HHHccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELT-V----EELKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~-~----~~l~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+.+.+...+... . +.+...++||+|+.+.
T Consensus 22 gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 22 GIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASS 65 (279)
T ss_dssp HHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESS
T ss_pred HHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecc
Confidence 3566778899999877654211 1 1233468999999843
No 463
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=43.84 E-value=82 Score=25.75 Aligned_cols=55 Identities=24% Similarity=0.215 Sum_probs=32.1
Q ss_pred EEEEECCCCchH-HHHHHHHh-CCCeEEEEeCCCCC---HHHHccCCCCEEEECCCCCCcC
Q 032797 27 IIVIDNYDSFTY-NLCQYMGE-LGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQ 82 (133)
Q Consensus 27 i~vid~~~~~~~-~i~~~l~~-~G~~~~v~~~~~~~---~~~l~~~~~DgvIl~GG~~~~~ 82 (133)
++++.+ |.+.. .+..-+.+ .++++.+.|++..+ .+++...++|-|+|-|||-.+.
T Consensus 30 ~VIlvs-Dn~aD~~lA~~iaellNA~Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AVs 89 (337)
T COG2247 30 VVILVS-DNEADLLLALPIAELLNAPVLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAVS 89 (337)
T ss_pred EEEEec-chHHHHHHhhHHHHHhCCeeEecCcccccHHHHHHHHhhCCceEEEECCCCcCC
Confidence 444433 33432 33444444 57777766654322 3445556899999999998543
No 464
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=43.74 E-value=1.5e+02 Score=24.36 Aligned_cols=61 Identities=16% Similarity=0.299 Sum_probs=35.7
Q ss_pred CeEEEEECC----CCchHHHHHHHHhCCCeEEEEeCC--CCCHHHH-------ccCCCCEEEECCCCCCcCCchH
Q 032797 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 25 ~~i~vid~~----~~~~~~i~~~l~~~G~~~~v~~~~--~~~~~~l-------~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
.+++|+.-. .++...+.+.|++.|+++.++..- +.+.+.+ ...++|.||=-|| |++-|...
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGG-GS~iD~AK 123 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGG-GSVLDAAK 123 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHH
Confidence 466666211 133445778888899988766311 1222322 2358999997777 56666554
No 465
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=43.34 E-value=85 Score=23.03 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=23.2
Q ss_pred HHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG 77 (133)
+.+++++.|+.+.+....+. ..+.+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 21 INQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred HHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCC
Confidence 45566778998877654211 112233458999998753
No 466
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=43.32 E-value=1.4e+02 Score=23.59 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=42.7
Q ss_pred CeEEEEECCCCchHHHHHHHH-hCCCeEEEEeCCCC-CHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMG-ELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~-~~G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
++|+++|........+.+.|. ..++++.....+.. ..+.+....+|.+++--. .|...+ ...+.++. ....|++
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~pDlVllD~~--mp~~~G~e~l~~l~~-~~~~pvi 77 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQPPDVILMDLE--MPRMDGVEATRRIMA-ERPCPIL 77 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccCCCEEEEcCC--CCCCCHHHHHHHHHH-HCCCcEE
Confidence 478999875555566777784 55766643332211 122233347898877221 222222 23344444 3458999
Q ss_pred EEech
Q 032797 102 GVCMG 106 (133)
Q Consensus 102 GIClG 106 (133)
-++-.
T Consensus 78 vvs~~ 82 (337)
T PRK12555 78 IVTSL 82 (337)
T ss_pred EEeCC
Confidence 88754
No 467
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.75 E-value=75 Score=23.56 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=20.8
Q ss_pred HHHHHHhC-----CCeEEEEeCCCCC------HHHHccCCCCEEEECCC
Q 032797 40 LCQYMGEL-----GYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~-----G~~~~v~~~~~~~------~~~l~~~~~DgvIl~GG 77 (133)
+.+..++. |+++.+....... .+.+...++||+|+.+.
T Consensus 21 i~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~ 69 (274)
T cd06311 21 AQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPF 69 (274)
T ss_pred HHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44455554 6777766543211 11122347999999753
No 468
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=42.48 E-value=1e+02 Score=22.90 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~G 76 (133)
.+.+.+++.|+.+.+...+. ... .....+||+|+.+
T Consensus 25 gi~~~~~~~g~~~~~~~~~~-~~~-~~~~~vdgii~~~ 60 (270)
T cd01544 25 GIEKRAQELGIELTKFFRDD-DLL-EILEDVDGIIAIG 60 (270)
T ss_pred HHHHHHHHcCCEEEEEeccc-hhH-HhccCcCEEEEec
Confidence 35566777899998876531 122 2235899999865
No 469
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.46 E-value=61 Score=23.89 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
.+.+.+++.|+++.+...+..+. +.+....+||+|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 20 AVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 35566777899988775432111 1223347999999764
No 470
>PTZ00445 p36-lilke protein; Provisional
Probab=42.33 E-value=1.5e+02 Score=22.75 Aligned_cols=64 Identities=16% Similarity=0.037 Sum_probs=44.4
Q ss_pred hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-C--------chHHHHHHHHh-CCCCCEEEEech
Q 032797 37 TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-D--------SGISLQTVLEL-GPTVPLFGVCMG 106 (133)
Q Consensus 37 ~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d--------~~~~~~~i~~~-~~~~PvLGIClG 106 (133)
...+++.|++.|+.......|. +.-. +-|||..+|. + ...+..++.++ +.++||.=+=+.
T Consensus 31 ~~~~v~~L~~~GIk~Va~D~Dn-TlI~---------~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASDFDL-TMIT---------KHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred HHHHHHHHHHcCCeEEEecchh-hhhh---------hhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 4458899999999998877652 2211 2357766665 2 23356677776 789999999999
Q ss_pred HHHH
Q 032797 107 LQCI 110 (133)
Q Consensus 107 ~QlL 110 (133)
-|..
T Consensus 101 d~~~ 104 (219)
T PTZ00445 101 DKEL 104 (219)
T ss_pred chhh
Confidence 8855
No 471
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=42.28 E-value=67 Score=25.70 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=63.0
Q ss_pred ccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHH----HccCCCCEEEECCCCC------CcCCch--
Q 032797 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPG------APQDSG-- 85 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~~~~----l~~~~~DgvIl~GG~~------~~~d~~-- 85 (133)
.....+-|||=||-...|.+.=.+..+++|++..=+...+. .++. +....+|-+||||=-+ +..|..
T Consensus 100 ~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~Y 179 (287)
T PF05582_consen 100 EYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNY 179 (287)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhh
Confidence 44455669999997666665555666788988775554322 1221 2335899999998433 111211
Q ss_pred ----HHHHHHH---Hh----CCCCCEEEEechHHHHHHHhCCeeeeccC
Q 032797 86 ----ISLQTVL---EL----GPTVPLFGVCMGLQCIGEAFGDCAFSAWC 123 (133)
Q Consensus 86 ----~~~~~i~---~~----~~~~PvLGIClG~QlLa~a~GG~v~~~~~ 123 (133)
.+.+.++ ++ +.=+=+.|-|-.|=---...|+.-..+|.
T Consensus 180 rnSkyFVeaV~~aR~~ep~~D~LVIfAGACQS~fEall~AGANFASSP~ 228 (287)
T PF05582_consen 180 RNSKYFVEAVKEARKYEPNLDDLVIFAGACQSHFEALLEAGANFASSPK 228 (287)
T ss_pred hccHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCccccCCcc
Confidence 1334433 33 23345668898887777777888766654
No 472
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=42.25 E-value=2.4e+02 Score=25.15 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=36.7
Q ss_pred ccccCCCCCeEEEEECCCCc-----h----HHHHHHHHh----C-CCeEEEEe--CCCCC-H-HHHc----cCCCCEEEE
Q 032797 17 DKKSKNNKNPIIVIDNYDSF-----T----YNLCQYMGE----L-GYHFEVYR--NDELT-V-EELK----RKNPRGVLI 74 (133)
Q Consensus 17 ~~~~~~~~~~i~vid~~~~~-----~----~~i~~~l~~----~-G~~~~v~~--~~~~~-~-~~l~----~~~~DgvIl 74 (133)
+-..|...+++.||--.|.. . ..+.+.+.+ . |+++..+. .|+.. . +.+. ...+|.||.
T Consensus 451 ~~~~~~~~~rvaIIt~sde~~~~~~~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIt 530 (659)
T PLN02699 451 SIEAQNPEVKVAILTVSDTVSSGAGPDRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILT 530 (659)
T ss_pred ccccccCCcEEEEEEECCcccCCCcccccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 45667788899888433321 1 234455543 3 87765332 12111 1 1121 136899999
Q ss_pred CCCCC-CcCCc
Q 032797 75 SPGPG-APQDS 84 (133)
Q Consensus 75 ~GG~~-~~~d~ 84 (133)
+||.+ +++|.
T Consensus 531 TGGts~g~~D~ 541 (659)
T PLN02699 531 LGGTGFTPRDV 541 (659)
T ss_pred CCCccCCCCcc
Confidence 99976 44554
No 473
>PRK13059 putative lipid kinase; Reviewed
Probab=42.15 E-value=1.4e+02 Score=23.21 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=26.1
Q ss_pred HHHHHHhCCCeEEEEeCCCC-CHHH---HccCCCCEEEECCCCCCc
Q 032797 40 LCQYMGELGYHFEVYRNDEL-TVEE---LKRKNPRGVLISPGPGAP 81 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~-~~~~---l~~~~~DgvIl~GG~~~~ 81 (133)
+.+.|++.|.++.++..... ..+. .....+|.||+.||-|+.
T Consensus 24 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGTv 69 (295)
T PRK13059 24 VIRIHQEKGYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDGTV 69 (295)
T ss_pred HHHHHHHCCcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCccHH
Confidence 56678888988776543211 1111 112468999999998753
No 474
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=42.10 E-value=1.5e+02 Score=23.51 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=49.9
Q ss_pred ccCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC-----C-cCCchHHHHHH
Q 032797 19 KSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-----A-PQDSGISLQTV 91 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-----~-~~d~~~~~~~i 91 (133)
+.++...+|.+.+....+. ..+.+.|.+.|++++++... ....+. .++|.+|+ |--. + .+..+...-.+
T Consensus 130 ~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Ds--a~~~~m-~~vd~Viv-GAD~I~~nG~v~NKiGT~~lA~ 205 (275)
T PRK08335 130 KRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITDA--QLGLFA-KEATLALV-GADNVTRDGYVVNKAGTYLLAL 205 (275)
T ss_pred HHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEecc--HHHHHH-HhCCEEEE-CccEEecCCCEeehhhHHHHHH
Confidence 4456667888887665443 34688899999999887643 222332 25887777 3211 1 11223222222
Q ss_pred HHhCCCCCEEEEechHHH
Q 032797 92 LELGPTVPLFGVCMGLQC 109 (133)
Q Consensus 92 ~~~~~~~PvLGIClG~Ql 109 (133)
-.-..++|++-.|-.+-+
T Consensus 206 ~Ak~~~vPfyV~a~~~k~ 223 (275)
T PRK08335 206 ACHDNGVPFYVAAETFKF 223 (275)
T ss_pred HHHHcCCCEEEECcccee
Confidence 222467999988755444
No 475
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=41.90 E-value=2e+02 Score=23.84 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=47.4
Q ss_pred HHHHHh-CCCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCCch----HHHHHHHH-hCCCCCEE---EEechHH
Q 032797 41 CQYMGE-LGYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLF---GVCMGLQ 108 (133)
Q Consensus 41 ~~~l~~-~G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~-~~~~~PvL---GIClG~Q 108 (133)
.+++++ .+..+.+... .+.++. ...++|+|+++|..|...+.. ..+..+.+ +..++||+ ||-.|..
T Consensus 237 i~~lr~~~~~pvivKgV--~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~D 314 (381)
T PRK11197 237 LEWIRDFWDGPMVIKGI--LDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLD 314 (381)
T ss_pred HHHHHHhCCCCEEEEec--CCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHH
Confidence 455655 4555544433 344442 335899999988655443321 12233333 34579998 7889999
Q ss_pred HH-HHHhCCeeee
Q 032797 109 CI-GEAFGDCAFS 120 (133)
Q Consensus 109 lL-a~a~GG~v~~ 120 (133)
++ +.++|++..-
T Consensus 315 i~KALaLGA~~V~ 327 (381)
T PRK11197 315 VVRMIALGADTVL 327 (381)
T ss_pred HHHHHHcCcCcee
Confidence 98 7799987553
No 476
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=41.87 E-value=1.3e+02 Score=24.32 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=34.6
Q ss_pred CeEEEEECCCC-chHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchHH
Q 032797 25 NPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 25 ~~i~vid~~~~-~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.|++||--... +...+.+.|++.|.++.++..- +.+.+. ....++|.||--|| |++-|....
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~~D~aK~ 95 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGG-GSVLDTAKA 95 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHHH
Confidence 57777743222 2345677788888777655321 122222 22347999995566 466565543
No 477
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=41.75 E-value=24 Score=30.59 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=19.2
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 032797 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (133)
.+.|++|+-||.++-.....+.+..++...+++|.||
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGI 196 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGV 196 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 4678888888855433333232333322334666665
No 478
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=41.73 E-value=1.7e+02 Score=22.90 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=34.8
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC--CCHHHHccCCCCEEEECCCCCCcCC
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGAPQD 83 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~--~~~~~l~~~~~DgvIl~GG~~~~~d 83 (133)
++++.+ .+|. .+...++..|.++..++.+. .+.+.+...+.+.++++ .|.+|.-
T Consensus 81 ~vv~~~--P~y~-~y~~~~~~~G~~v~~vp~~~~~~~~~~l~~~~~k~v~l~-nP~NPTG 136 (332)
T PRK06425 81 NIIIVE--PNFN-EYKGYAFTHGIRISALPFNLINNNPEILNNYNFDLIFIV-SPDNPLG 136 (332)
T ss_pred cEEEeC--CChH-HHHHHHHHcCCeEEEEeCCcccCcHHHHhhcCCCEEEEe-CCCCCcC
Confidence 566664 2454 45667788899998887642 22333333467888887 8888873
No 479
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=41.72 E-value=1.2e+02 Score=24.22 Aligned_cols=84 Identities=13% Similarity=0.157 Sum_probs=47.7
Q ss_pred ccCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-------CchHH-HH
Q 032797 19 KSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-------DSGIS-LQ 89 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-------d~~~~-~~ 89 (133)
..++.+.+|.+.+....+. ....+.|.+.|+++.+++.. ....+. .+.|.+++ |-- ... ..+.. +.
T Consensus 141 ~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Ds--av~~~m-~~vd~Viv-GAd-~v~~nG~v~nkiGT~~~A 215 (310)
T PRK08535 141 HEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDS--AVRYFM-KDVDKVVV-GAD-AITANGAVINKIGTSQIA 215 (310)
T ss_pred HHCCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehh--HHHHHH-HhCCEEEE-Ccc-EEecCCCEEeHHhHHHHH
Confidence 3445567888887655432 45678899999999988643 222222 25777776 321 111 22222 22
Q ss_pred HHHHhCCCCCEEEEechHH
Q 032797 90 TVLELGPTVPLFGVCMGLQ 108 (133)
Q Consensus 90 ~i~~~~~~~PvLGIClG~Q 108 (133)
.+.+ ..++|++-.|--+-
T Consensus 216 ~~Ak-~~~vPv~V~a~~~K 233 (310)
T PRK08535 216 LAAH-EARVPFMVAAETYK 233 (310)
T ss_pred HHHH-HhCCCEEEecccce
Confidence 2222 34699998875433
No 480
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=41.72 E-value=1.6e+02 Score=23.55 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=41.9
Q ss_pred CeEEEEECCCCch---HHHHHHHHhCCCeEEEEe-C-CCCCHHHH-------ccCCCCEEEECCCCCCcCCchHHHHHHH
Q 032797 25 NPIIVIDNYDSFT---YNLCQYMGELGYHFEVYR-N-DELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVL 92 (133)
Q Consensus 25 ~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~-~-~~~~~~~l-------~~~~~DgvIl~GG~~~~~d~~~~~~~i~ 92 (133)
.|++|+--...+. ..+.+.|++.|.++.++. . .+.+.+.+ ...++|.||--|| |++.|.........
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~ia~~~ 101 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKVLADKL 101 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHHHHHc
Confidence 6777774322332 235566777788765432 1 11233322 2347999996666 56666655433322
Q ss_pred HhCCCCCEEEEec
Q 032797 93 ELGPTVPLFGVCM 105 (133)
Q Consensus 93 ~~~~~~PvLGICl 105 (133)
++|+..|.=
T Consensus 102 ----~~p~i~VPT 110 (345)
T cd08171 102 ----GKPVFTFPT 110 (345)
T ss_pred ----CCCEEEecC
Confidence 578877763
No 481
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=41.58 E-value=1.1e+02 Score=23.33 Aligned_cols=59 Identities=15% Similarity=0.347 Sum_probs=32.0
Q ss_pred HHHHHHhCCCeEEEEeCCC-CCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 032797 40 LCQYMGELGYHFEVYRNDE-LTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~-~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (133)
+.+.+++.|+.+.+...+. .+.+ .+...++||+|+.+.. +.. ..+.+.....++|+.-+
T Consensus 21 i~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~--~~~---~~~~l~~~~~~iPvV~~ 87 (295)
T TIGR02955 21 MVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVS--PEA---LNHDLAQLTKSIPVFAL 87 (295)
T ss_pred HHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC--hhh---hhHHHHHHhcCCCEEEE
Confidence 4556677899998875431 1211 1223589999997532 111 11223333347887654
No 482
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=41.08 E-value=2e+02 Score=23.44 Aligned_cols=62 Identities=19% Similarity=0.353 Sum_probs=35.7
Q ss_pred CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchHH
Q 032797 25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.|++|+--.... ...+.+.|++.|.++.++... +.+.+. +...++|.||--|| |++.|....
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 102 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAKS 102 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHH
Confidence 577777422222 245777888889887766421 122222 22347899995566 566665543
No 483
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=41.05 E-value=1.3e+02 Score=21.36 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=41.0
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
.+|+++|........+...|+..|+.+............+. ..+|.+++--. .|...+ ...+.++... ..|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~d~vl~d~~--~~~~~g~~~~~~l~~~~-~~~ii~l 77 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVM--MPKKNGIDTLKELRQTH-QTPVIML 77 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh-cCCCEEEEeCC--CCCCcHHHHHHHHHhcC-CCcEEEE
Confidence 47899987666666778888888887654322100111222 36898877322 122222 2334444422 2787777
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
.
T Consensus 78 t 78 (232)
T PRK10955 78 T 78 (232)
T ss_pred E
Confidence 5
No 484
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=40.95 E-value=1.2e+02 Score=20.81 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=34.8
Q ss_pred CCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEech-------HHHHHHHhCCeeeecc
Q 032797 69 PRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG-------LQCIGEAFGDCAFSAW 122 (133)
Q Consensus 69 ~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG-------~QlLa~a~GG~v~~~~ 122 (133)
-..|++|-|. +.+.....+.+++. ..++++..|-+| ++-|+.+-||+.....
T Consensus 101 ~~iillTDG~--~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~~~~~l~~ia~~~gG~~~~~~ 160 (171)
T cd01461 101 PQIILLTDGE--VTNESQILKNVREALSGRIRLFTFGIGSDVNTYLLERLAREGRGIARRIY 160 (171)
T ss_pred cEEEEEeCCC--CCCHHHHHHHHHHhcCCCceEEEEEeCCccCHHHHHHHHHcCCCeEEEec
Confidence 3456677775 23333344556554 458999999998 7788888899876554
No 485
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=40.91 E-value=48 Score=28.10 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=33.6
Q ss_pred CCCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 21 KNNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
...+++|+|+|+.+.-+ ..+.+.+++.|+++++.++. ++. --||.+..||
T Consensus 182 ~~~~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~~-----~L~--y~~g~L~~~~ 235 (445)
T PF14403_consen 182 RVEKPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDPR-----DLE--YRDGRLYAGG 235 (445)
T ss_pred cCCCCcEEEEecccCCccchHHHHHHHHHHcCCceEecChH-----Hce--ecCCEEEECC
Confidence 34568999999876432 24778899999999987653 343 1355555554
No 486
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=40.75 E-value=1.4e+02 Score=24.20 Aligned_cols=61 Identities=15% Similarity=0.352 Sum_probs=34.9
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchH
Q 032797 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 25 ~~i~vid~~~----~~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
.|++|+-... ++...+...|+..|.++.++.-- +.+.+. ....++|.||=-|| |++-|...
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK 102 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCAK 102 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHH
Confidence 5788773221 23345677888888888766321 123222 22358999995565 45555544
No 487
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=40.72 E-value=2e+02 Score=23.46 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=34.7
Q ss_pred CeEEEEECC----CCchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchH
Q 032797 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 25 ~~i~vid~~----~~~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
.+++|+--. .+....+.+.|++.|.++.++.-- +.+.+. ....++|.||=-|| |++-|...
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG-GS~iD~AK 105 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG-GSPHDCAK 105 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHH
Confidence 577777321 123345777888889877665311 123332 22358999995565 45555554
No 488
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=40.43 E-value=83 Score=26.33 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=41.1
Q ss_pred CeEEEEECC----CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCC
Q 032797 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVP 99 (133)
Q Consensus 25 ~~i~vid~~----~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~~~~~P 99 (133)
++++|+--- -.+.++++++|.. |.++-++.+......++.. |..+-.|. +.+.+.|+....++-
T Consensus 103 ~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~----------~~f~ldDYi~~l~~~i~~~G~~v~ 171 (406)
T TIGR01849 103 PAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNARMVPLSA----------GKFDLEDYIDYLIEFIRFLGPDIH 171 (406)
T ss_pred CcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCchhc----------CCCCHHHHHHHHHHHHHHhCCCCc
Confidence 577777322 2224567777777 8888887764221110111 11111111 123456666655699
Q ss_pred EEEEechHHHH
Q 032797 100 LFGVCMGLQCI 110 (133)
Q Consensus 100 vLGIClG~QlL 110 (133)
++|+|.|--+.
T Consensus 172 l~GvCqgG~~~ 182 (406)
T TIGR01849 172 VIAVCQPAVPV 182 (406)
T ss_pred EEEEchhhHHH
Confidence 99999998864
No 489
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=40.34 E-value=1e+02 Score=23.49 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=19.3
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEec
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGICl 105 (133)
.+|.+|+..- .. ...++++. .-++|+.|||-
T Consensus 155 ~Pd~vii~d~----~~---~~~ai~Ea~~l~IP~I~ivD 186 (225)
T TIGR01011 155 LPDLLFVIDP----VK---EKIAVAEARKLGIPVVAIVD 186 (225)
T ss_pred CCCEEEEeCC----Cc---cHHHHHHHHHcCCCEEEEee
Confidence 4777777442 22 22356654 56799999983
No 490
>PRK06444 prephenate dehydrogenase; Provisional
Probab=40.22 E-value=1e+02 Score=23.00 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=22.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFE 52 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~ 52 (133)
|++.+|.-.+..-..+.+.|++.|+.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE
Confidence 5788998666777788899999998765
No 491
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=40.07 E-value=2.2e+02 Score=23.79 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=49.0
Q ss_pred ccccccccCC--CCCeEEEEECCCCc-hHHHHHHHHhC--CCeEEEEeCCC---CCHHH-------Hcc-CCCCEEEECC
Q 032797 13 LYLDDKKSKN--NKNPIIVIDNYDSF-TYNLCQYMGEL--GYHFEVYRNDE---LTVEE-------LKR-KNPRGVLISP 76 (133)
Q Consensus 13 ~~~~~~~~~~--~~~~i~vid~~~~~-~~~i~~~l~~~--G~~~~v~~~~~---~~~~~-------l~~-~~~DgvIl~G 76 (133)
+|...++.+. -+.+|.||-...+- .+.+.+.+++. .+++.++|..- ....+ +.. .++|.|||.=
T Consensus 116 lfd~~~k~~lP~~p~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~R 195 (432)
T TIGR00237 116 LFDQEYKKPLPHFPKRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGR 195 (432)
T ss_pred CCCchhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEec
Confidence 3433334443 34689999765554 34566667654 46777776531 11122 111 2489999977
Q ss_pred CCCCcCCchHH--HHHHHH-hCCCCCEE
Q 032797 77 GPGAPQDSGIS--LQTVLE-LGPTVPLF 101 (133)
Q Consensus 77 G~~~~~d~~~~--~~~i~~-~~~~~PvL 101 (133)
|.|+..|--.+ ..+.+. +...+||+
T Consensus 196 GGGs~eDL~~Fn~e~~~rai~~~~~Pvi 223 (432)
T TIGR00237 196 GGGSLEDLWSFNDEKVARAIFLSKIPII 223 (432)
T ss_pred CCCCHHHhhhcCcHHHHHHHHcCCCCEE
Confidence 76765543221 234444 35668986
No 492
>PRK09492 treR trehalose repressor; Provisional
Probab=39.87 E-value=96 Score=23.61 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCCC-H-----HHHccCCCCEEEECC
Q 032797 39 NLCQYMGELGYHFEVYRNDELT-V-----EELKRKNPRGVLISP 76 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~-~-----~~l~~~~~DgvIl~G 76 (133)
.+.+.+++.|+.+.+....... . +.+....+||+|+.+
T Consensus 83 ~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 126 (315)
T PRK09492 83 TMLPAFYEQGYDPIIMESQFSPEKVNEHLGVLKRRNVDGVILFG 126 (315)
T ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHhcCCCEEEEeC
Confidence 3566777889998776543111 1 112235799999976
No 493
>PF13941 MutL: MutL protein
Probab=39.33 E-value=2.4e+02 Score=24.03 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=37.4
Q ss_pred ccCCCCCeEEEEECCCCchHHH-HHHHHhCCCeEEEEeCCCCCH---HHHccCCCCEEEECCCCC
Q 032797 19 KSKNNKNPIIVIDNYDSFTYNL-CQYMGELGYHFEVYRNDELTV---EELKRKNPRGVLISPGPG 79 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~~~i-~~~l~~~G~~~~v~~~~~~~~---~~l~~~~~DgvIl~GG~~ 79 (133)
.+...+.|++++..-.+.+..- .++...+|..+.-+-....+. +.+...++|.|+|+||-.
T Consensus 71 SSAaGGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~PDiILLaGGtD 135 (457)
T PF13941_consen 71 SSAAGGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIREIRPDIILLAGGTD 135 (457)
T ss_pred CCCCCcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhccCCCEEEEeCCcc
Confidence 5567778888887644444332 233344677765443323443 345556899999999953
No 494
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=38.84 E-value=29 Score=29.36 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=24.9
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE-------------echHHHHH
Q 032797 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIG 111 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI-------------ClG~QlLa 111 (133)
.+.|.+++-||.++-.....+.+.+++...++|+.|| |+|++--.
T Consensus 171 ~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv 228 (443)
T PRK06830 171 MNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAV 228 (443)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHH
Confidence 4778888888865433333333333332233555554 78877543
No 495
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=38.80 E-value=1.6e+02 Score=23.91 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCHHHH-ccCCCCEEEECCCCCCcCCchH-------HHHHHHHhCCCCCEEEEechHHH
Q 032797 38 YNLCQYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQDSGI-------SLQTVLELGPTVPLFGVCMGLQC 109 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~~~~~l-~~~~~DgvIl~GG~~~~~d~~~-------~~~~i~~~~~~~PvLGIClG~Ql 109 (133)
..+.+.|++.|.++.+..-+.....++ ...+++..++ |+.+ ....+. ..++.+.+.+.+|=+.||.|.--
T Consensus 17 k~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~i-G~~g-~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s~~ 94 (335)
T PF04007_consen 17 KNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVI-GKHG-DSLYGKLLESIERQYKLLKLIKKFKPDVAISFGSPE 94 (335)
T ss_pred HHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEE-cCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCEEEecCcHH
Confidence 457778899999987764321222333 3458999999 5544 121121 12333333455788999988766
Q ss_pred HH-HHhCC
Q 032797 110 IG-EAFGD 116 (133)
Q Consensus 110 La-~a~GG 116 (133)
.+ .|+|-
T Consensus 95 a~~va~~l 102 (335)
T PF04007_consen 95 AARVAFGL 102 (335)
T ss_pred HHHHHHHh
Confidence 65 34443
No 496
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=38.75 E-value=1.2e+02 Score=22.21 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=15.1
Q ss_pred CCchHHH----HHHHHhCCCeEEEEeCC
Q 032797 34 DSFTYNL----CQYMGELGYHFEVYRND 57 (133)
Q Consensus 34 ~~~~~~i----~~~l~~~G~~~~v~~~~ 57 (133)
.+.+..+ .+.+++.|++++++...
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~ 40 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLP 40 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 4555544 34456689999887643
No 497
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=37.75 E-value=2.5e+02 Score=23.76 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=50.1
Q ss_pred CCCCeEEEEECCCCchHH---HHHHHHhC--CCeEEEEeCCCCCHHH---HccCCCCEEEECCCCCCcCC------ch--
Q 032797 22 NNKNPIIVIDNYDSFTYN---LCQYMGEL--GYHFEVYRNDELTVEE---LKRKNPRGVLISPGPGAPQD------SG-- 85 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~---i~~~l~~~--G~~~~v~~~~~~~~~~---l~~~~~DgvIl~GG~~~~~d------~~-- 85 (133)
..+.+++++|.-.+.... ..+.+++. +..+ +.- +-.+.++ +....+|+|.+++||++... .+
T Consensus 238 ~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~v-i~g-~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p 315 (486)
T PRK05567 238 EAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQI-IAG-NVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVP 315 (486)
T ss_pred HhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCE-EEe-ccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcC
Confidence 345667778743232222 34445543 2222 222 2234443 33358999999888874221 11
Q ss_pred H--HHHHHHH-h-CCCCCEEE---EechHHHH-HHHhCCeee
Q 032797 86 I--SLQTVLE-L-GPTVPLFG---VCMGLQCI-GEAFGDCAF 119 (133)
Q Consensus 86 ~--~~~~i~~-~-~~~~PvLG---IClG~QlL-a~a~GG~v~ 119 (133)
. .+..+.+ . ..++|+++ |=.+..+. |.++|+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v 357 (486)
T PRK05567 316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAV 357 (486)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEE
Confidence 1 1122222 2 35788874 76777766 778998654
No 498
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=37.70 E-value=43 Score=25.98 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=30.4
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeC---CCCCHHHH----ccCCCCEEEECCCCCCcC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN---DELTVEEL----KRKNPRGVLISPGPGAPQ 82 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~---~~~~~~~l----~~~~~DgvIl~GG~~~~~ 82 (133)
|||+|+...+..-..+.+.|++.|+++..... +..+.+.+ ...++|.||-+.+..++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~ 65 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINCAAYTNVD 65 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence 68888875333345688889888877766522 21222222 223799999999866554
No 499
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=37.51 E-value=1.4e+02 Score=20.63 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=37.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCC-CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (133)
++|+++|........+.+.|... ++.....-.+.. ....+....+|.+++-=. .+... ..++++.+....|++-
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~--~~~~~--g~~~~~~l~~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDIS--MPDIS--GLELLSQLPKGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCC--HHHHHHHHccCCCEEE
Confidence 47899987555556677777643 444322111100 112233346898777211 11111 2234444444578776
Q ss_pred Ee
Q 032797 103 VC 104 (133)
Q Consensus 103 IC 104 (133)
+.
T Consensus 78 ~s 79 (196)
T PRK10360 78 LS 79 (196)
T ss_pred EE
Confidence 64
No 500
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=37.43 E-value=1.6e+02 Score=22.96 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=19.1
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEec
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGICl 105 (133)
..|.+|..+|+ ...+..+..++|++.++.
T Consensus 252 ~~d~~i~~~g~---------~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 252 AADLVICRAGA---------STVAELAAAGLPAILVPL 280 (357)
T ss_pred hCCEEEECCCH---------HHHHHHHHhCCCEEEecC
Confidence 46766665542 234455567899999986
Done!