Query 032797
Match_columns 133
No_of_seqs 170 out of 1272
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 09:32:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qdl_B Protein (anthranilate s 99.9 1.1E-24 3.6E-29 160.8 12.7 103 27-129 4-109 (195)
2 1wl8_A GMP synthase [glutamine 99.9 3.9E-24 1.3E-28 156.6 14.1 105 25-131 1-106 (189)
3 1i1q_B Anthranilate synthase c 99.9 1.5E-24 5E-29 159.6 11.1 106 25-131 1-110 (192)
4 3r75_A Anthranilate/para-amino 99.9 3.2E-24 1.1E-28 182.9 11.6 122 7-132 420-556 (645)
5 2a9v_A GMP synthase; structura 99.9 3.5E-23 1.2E-27 154.9 8.0 107 22-131 11-119 (212)
6 1a9x_B Carbamoyl phosphate syn 99.9 2.8E-22 9.7E-27 161.8 13.0 102 24-128 190-292 (379)
7 3tqi_A GMP synthase [glutamine 99.9 6.2E-23 2.1E-27 171.5 7.8 106 24-131 10-116 (527)
8 3uow_A GMP synthetase; structu 99.9 2.6E-22 8.7E-27 168.8 11.3 106 25-131 8-117 (556)
9 2ywb_A GMP synthase [glutamine 99.9 3.5E-22 1.2E-26 166.0 9.6 104 26-131 1-105 (503)
10 2vpi_A GMP synthase; guanine m 99.9 2.1E-22 7.1E-27 151.5 7.4 105 24-130 24-129 (218)
11 1gpm_A GMP synthetase, XMP ami 99.9 5.1E-22 1.8E-26 165.8 10.5 106 24-131 7-113 (525)
12 2vxo_A GMP synthase [glutamine 99.8 2.4E-21 8.3E-26 166.4 6.6 117 13-131 18-135 (697)
13 3l7n_A Putative uncharacterize 99.8 1.8E-20 6E-25 142.0 9.9 105 25-131 1-118 (236)
14 3m3p_A Glutamine amido transfe 99.8 1.4E-20 4.6E-25 144.5 8.8 105 24-130 3-115 (250)
15 4gud_A Imidazole glycerol phos 99.8 2E-20 6.9E-25 138.7 5.4 93 24-123 2-98 (211)
16 1o1y_A Conserved hypothetical 99.8 2.4E-19 8.3E-24 136.2 10.2 108 20-129 8-126 (239)
17 2ywj_A Glutamine amidotransfer 99.7 1.2E-18 4E-23 127.0 5.7 86 25-119 1-90 (186)
18 1ka9_H Imidazole glycerol phos 99.7 5.4E-18 1.8E-22 125.0 5.4 92 24-122 2-112 (200)
19 2nv0_A Glutamine amidotransfer 99.7 9.2E-18 3.2E-22 123.1 5.5 87 25-118 2-93 (196)
20 3fij_A LIN1909 protein; 11172J 99.7 5.6E-17 1.9E-21 124.0 9.1 83 38-121 31-132 (254)
21 1q7r_A Predicted amidotransfer 99.7 6.8E-18 2.3E-22 126.3 3.4 91 22-119 21-116 (219)
22 3d54_D Phosphoribosylformylgly 99.7 8.3E-17 2.8E-21 118.9 7.3 93 24-122 2-106 (213)
23 1gpw_B Amidotransferase HISH; 99.7 4.4E-17 1.5E-21 119.9 5.7 83 25-115 1-95 (201)
24 1l9x_A Gamma-glutamyl hydrolas 99.6 4.9E-16 1.7E-20 122.4 9.2 83 39-122 56-149 (315)
25 2v4u_A CTP synthase 2; pyrimid 99.6 5.9E-17 2E-21 126.3 3.0 98 19-119 20-141 (289)
26 1vco_A CTP synthetase; tetrame 99.6 8.5E-17 2.9E-21 135.0 4.0 94 26-121 309-408 (550)
27 2iss_D Glutamine amidotransfer 99.6 3.1E-16 1.1E-20 116.3 5.4 89 22-117 18-111 (208)
28 2w7t_A CTP synthetase, putativ 99.6 2E-16 6.7E-21 122.4 2.5 92 25-119 9-118 (273)
29 2ywd_A Glutamine amidotransfer 99.6 8.3E-16 2.8E-20 111.9 3.5 86 24-116 2-93 (191)
30 2abw_A PDX2 protein, glutamina 99.6 1.7E-15 5.9E-20 113.5 5.0 90 24-120 3-103 (227)
31 1s1m_A CTP synthase; CTP synth 99.5 5.8E-16 2E-20 129.8 0.9 79 39-121 307-396 (545)
32 1jvn_A Glutamine, bifunctional 99.5 5.7E-15 1.9E-19 124.1 3.7 92 25-121 5-115 (555)
33 3nva_A CTP synthase; rossman f 99.5 7.7E-15 2.6E-19 122.2 3.1 96 20-119 289-401 (535)
34 2vdj_A Homoserine O-succinyltr 99.5 9.5E-14 3.2E-18 109.0 8.9 113 17-129 27-168 (301)
35 2h2w_A Homoserine O-succinyltr 99.5 1.2E-13 4.1E-18 108.9 8.0 114 17-130 39-181 (312)
36 3ugj_A Phosphoribosylformylgly 99.0 1.4E-10 4.8E-15 105.1 4.7 90 22-113 1045-1152(1303)
37 1oi4_A Hypothetical protein YH 99.0 1.5E-09 5.1E-14 79.3 8.6 97 19-116 18-139 (193)
38 4hcj_A THIJ/PFPI domain protei 99.0 1.2E-09 4.1E-14 79.4 6.4 75 39-113 26-117 (177)
39 3l4e_A Uncharacterized peptida 98.9 7.8E-10 2.7E-14 82.3 4.9 88 22-113 25-129 (206)
40 1fy2_A Aspartyl dipeptidase; s 98.9 4.1E-10 1.4E-14 84.8 3.2 88 23-114 30-130 (229)
41 3l18_A Intracellular protease 98.8 2.2E-08 7.4E-13 71.0 7.8 93 24-117 2-117 (168)
42 1vhq_A Enhancing lycopene bios 98.7 2.5E-08 8.5E-13 74.7 7.7 93 25-117 7-154 (232)
43 3l3b_A ES1 family protein; ssg 98.6 9.5E-08 3.3E-12 72.5 7.8 90 25-114 24-168 (242)
44 2rk3_A Protein DJ-1; parkinson 98.6 1E-07 3.5E-12 69.4 7.7 89 24-113 3-115 (197)
45 2ab0_A YAJL; DJ-1/THIJ superfa 98.6 5.5E-08 1.9E-12 71.5 6.2 90 24-113 2-116 (205)
46 2vrn_A Protease I, DR1199; cys 98.6 1.6E-07 5.3E-12 67.8 8.2 90 23-113 8-124 (190)
47 4e08_A DJ-1 beta; flavodoxin-l 98.6 1.3E-07 4.4E-12 68.5 7.2 90 23-113 4-116 (190)
48 2fex_A Conserved hypothetical 98.5 2.6E-07 8.8E-12 66.8 6.6 89 25-113 2-110 (188)
49 3ot1_A 4-methyl-5(B-hydroxyeth 98.4 1.9E-07 6.4E-12 68.8 4.8 93 20-113 5-121 (208)
50 3cne_A Putative protease I; st 98.4 5.6E-07 1.9E-11 64.1 7.1 90 24-113 2-120 (175)
51 1u9c_A APC35852; structural ge 98.4 7.3E-07 2.5E-11 65.9 7.8 74 40-113 34-138 (224)
52 3efe_A THIJ/PFPI family protei 98.4 7.4E-07 2.5E-11 65.8 7.6 89 25-113 6-121 (212)
53 3f5d_A Protein YDEA; unknow pr 98.4 9.9E-07 3.4E-11 65.1 8.2 87 25-113 4-109 (206)
54 3ej6_A Catalase-3; heme, hydro 98.4 1.8E-06 6.3E-11 74.0 10.4 92 22-113 535-646 (688)
55 3ttv_A Catalase HPII; heme ori 98.3 8.1E-07 2.8E-11 76.7 6.0 90 22-113 598-708 (753)
56 3n7t_A Macrophage binding prot 98.3 1.1E-06 3.9E-11 66.8 6.1 47 67-113 104-154 (247)
57 3uk7_A Class I glutamine amido 98.3 2.6E-06 9E-11 68.1 8.2 90 23-113 11-137 (396)
58 3uk7_A Class I glutamine amido 98.3 2.5E-06 8.6E-11 68.2 8.0 91 22-113 203-330 (396)
59 3gra_A Transcriptional regulat 98.2 2.3E-06 7.8E-11 62.8 6.8 91 22-113 3-117 (202)
60 3fse_A Two-domain protein cont 98.2 1.3E-06 4.4E-11 70.1 5.7 91 22-113 8-121 (365)
61 3er6_A Putative transcriptiona 98.2 1.4E-06 4.9E-11 64.2 5.2 91 21-113 5-124 (209)
62 3kkl_A Probable chaperone prot 98.2 3.6E-06 1.2E-10 63.8 6.3 47 67-113 97-147 (244)
63 3noq_A THIJ/PFPI family protei 98.1 7.6E-06 2.6E-10 61.3 7.8 87 24-113 5-113 (231)
64 1rw7_A YDR533CP; alpha-beta sa 98.1 3.2E-06 1.1E-10 63.6 5.4 46 68-113 98-147 (243)
65 1n57_A Chaperone HSP31, protei 98.1 9.4E-06 3.2E-10 62.9 7.5 75 40-114 81-195 (291)
66 3ewn_A THIJ/PFPI family protei 98.1 1.4E-05 4.8E-10 60.8 8.1 89 23-113 22-133 (253)
67 2iuf_A Catalase; oxidoreductas 98.0 6.8E-06 2.3E-10 70.5 6.7 92 22-113 527-648 (688)
68 1sy7_A Catalase 1; heme oxidat 98.0 1.4E-05 4.7E-10 69.0 7.4 92 23-115 533-646 (715)
69 3mgk_A Intracellular protease/ 97.9 4.4E-06 1.5E-10 61.7 2.3 88 23-113 3-113 (211)
70 4gdh_A DJ-1, uncharacterized p 97.8 4.1E-05 1.4E-09 55.7 5.7 86 24-110 4-120 (194)
71 3bhn_A THIJ/PFPI domain protei 97.6 7.7E-05 2.6E-09 56.1 5.1 91 21-116 17-133 (236)
72 3eod_A Protein HNR; response r 95.7 0.054 1.9E-06 34.9 7.5 82 22-105 5-87 (130)
73 3en0_A Cyanophycinase; serine 95.6 0.0028 9.7E-08 49.1 0.9 87 24-112 56-160 (291)
74 1z0s_A Probable inorganic poly 95.5 0.044 1.5E-06 42.1 7.3 72 24-107 29-101 (278)
75 3grc_A Sensor protein, kinase; 95.4 0.037 1.3E-06 36.2 5.8 85 21-107 3-90 (140)
76 2rdm_A Response regulator rece 95.2 0.083 2.8E-06 33.9 6.8 83 22-106 3-88 (132)
77 3snk_A Response regulator CHEY 95.1 0.019 6.4E-07 37.6 3.4 86 18-105 8-95 (135)
78 3gt7_A Sensor protein; structu 94.8 0.091 3.1E-06 35.2 6.4 81 22-104 5-88 (154)
79 2qxy_A Response regulator; reg 94.7 0.042 1.4E-06 36.0 4.5 81 23-106 3-84 (142)
80 2rjn_A Response regulator rece 94.7 0.098 3.4E-06 34.8 6.4 84 22-107 5-89 (154)
81 3cg4_A Response regulator rece 94.5 0.067 2.3E-06 34.9 5.1 82 22-105 5-89 (142)
82 3hv2_A Response regulator/HD d 94.5 0.091 3.1E-06 35.0 5.8 82 22-105 12-94 (153)
83 2qr3_A Two-component system re 94.4 0.086 2.9E-06 34.2 5.4 83 24-106 3-89 (140)
84 1qkk_A DCTD, C4-dicarboxylate 94.3 0.11 3.7E-06 34.6 5.8 82 23-105 2-83 (155)
85 2zay_A Response regulator rece 94.3 0.072 2.4E-06 35.0 4.8 82 22-105 6-90 (147)
86 3h5i_A Response regulator/sens 94.2 0.15 5.1E-06 33.3 6.3 80 23-105 4-86 (140)
87 2j48_A Two-component sensor ki 94.2 0.094 3.2E-06 32.5 5.1 80 24-105 1-83 (119)
88 2pln_A HP1043, response regula 94.1 0.11 3.8E-06 33.7 5.4 80 20-105 14-94 (137)
89 3jte_A Response regulator rece 94.0 0.14 4.9E-06 33.3 5.9 81 24-106 3-86 (143)
90 3i42_A Response regulator rece 93.9 0.077 2.6E-06 34.0 4.4 80 24-105 3-85 (127)
91 3kht_A Response regulator; PSI 93.8 0.12 4.2E-06 33.8 5.3 81 23-105 4-89 (144)
92 3cz5_A Two-component response 93.8 0.16 5.6E-06 33.6 6.0 81 23-105 4-87 (153)
93 2an1_A Putative kinase; struct 93.8 0.2 6.7E-06 38.0 7.0 76 25-107 6-97 (292)
94 3f6c_A Positive transcription 93.7 0.22 7.5E-06 32.0 6.3 81 25-107 2-84 (134)
95 3cnb_A DNA-binding response re 93.7 0.12 4.1E-06 33.5 5.0 82 22-105 6-92 (143)
96 3hzh_A Chemotaxis response reg 93.5 0.15 5E-06 34.2 5.4 82 22-105 34-119 (157)
97 3hdg_A Uncharacterized protein 93.5 0.094 3.2E-06 34.0 4.3 82 22-105 5-87 (137)
98 3cg0_A Response regulator rece 93.5 0.13 4.4E-06 33.3 4.9 81 22-105 7-90 (140)
99 4e7p_A Response regulator; DNA 93.4 0.18 6.3E-06 33.3 5.6 83 22-106 18-103 (150)
100 2gkg_A Response regulator homo 93.3 0.087 3E-06 33.3 3.7 78 24-103 5-86 (127)
101 1k68_A Phytochrome response re 93.3 0.29 9.9E-06 31.3 6.4 81 24-106 2-94 (140)
102 3rfq_A Pterin-4-alpha-carbinol 93.1 0.22 7.6E-06 35.9 6.1 62 21-84 27-106 (185)
103 1u0t_A Inorganic polyphosphate 93.0 0.22 7.5E-06 38.3 6.2 76 25-106 5-108 (307)
104 3lte_A Response regulator; str 93.0 0.059 2E-06 34.7 2.6 54 21-74 3-56 (132)
105 3kto_A Response regulator rece 93.0 0.059 2E-06 35.2 2.6 78 22-105 4-88 (136)
106 3hdv_A Response regulator; PSI 92.7 0.18 6.2E-06 32.5 4.7 82 23-106 6-90 (136)
107 2b4a_A BH3024; flavodoxin-like 92.7 0.19 6.6E-06 32.5 4.9 81 22-104 13-95 (138)
108 1mvo_A PHOP response regulator 92.5 0.33 1.1E-05 31.2 5.8 80 24-105 3-83 (136)
109 2ayx_A Sensor kinase protein R 92.4 0.39 1.3E-05 35.2 6.7 94 22-117 127-225 (254)
110 3r0j_A Possible two component 92.4 0.3 1E-05 35.4 6.0 85 19-105 18-103 (250)
111 2pl1_A Transcriptional regulat 92.4 0.54 1.8E-05 29.4 6.6 79 25-105 1-80 (121)
112 3lua_A Response regulator rece 92.4 0.2 6.9E-06 32.5 4.7 81 23-105 3-89 (140)
113 2i2c_A Probable inorganic poly 92.3 0.27 9.3E-06 37.1 5.9 64 25-107 1-71 (272)
114 1k66_A Phytochrome response re 92.3 0.28 9.5E-06 31.8 5.2 83 21-105 3-100 (149)
115 4dad_A Putative pilus assembly 92.3 0.13 4.3E-06 33.8 3.5 85 19-105 15-103 (146)
116 3a10_A Response regulator; pho 92.2 0.6 2.1E-05 29.0 6.6 79 25-105 2-81 (116)
117 1dbw_A Transcriptional regulat 92.0 0.69 2.3E-05 29.3 6.8 80 24-105 3-83 (126)
118 1kgs_A DRRD, DNA binding respo 92.0 0.42 1.4E-05 33.6 6.3 80 24-105 2-82 (225)
119 3nhm_A Response regulator; pro 91.8 0.52 1.8E-05 30.0 6.1 80 23-105 3-85 (133)
120 3gl9_A Response regulator; bet 91.8 0.65 2.2E-05 29.5 6.5 92 24-117 2-100 (122)
121 3f6p_A Transcriptional regulat 91.8 0.66 2.2E-05 29.3 6.5 79 24-105 2-81 (120)
122 2r47_A Uncharacterized protein 91.7 0.039 1.3E-06 39.0 0.5 80 24-105 26-125 (157)
123 1srr_A SPO0F, sporulation resp 91.7 0.36 1.2E-05 30.5 5.2 80 24-105 3-83 (124)
124 3crn_A Response regulator rece 91.6 0.47 1.6E-05 30.5 5.7 79 24-104 3-82 (132)
125 2qv7_A Diacylglycerol kinase D 91.6 1.6 5.5E-05 33.6 9.6 93 17-115 17-125 (337)
126 3rht_A (gatase1)-like protein; 91.2 0.74 2.5E-05 34.8 7.1 77 24-103 4-85 (259)
127 2qvg_A Two component response 91.1 0.2 6.9E-06 32.5 3.6 82 23-106 6-98 (143)
128 3kbq_A Protein TA0487; structu 91.1 0.56 1.9E-05 33.4 6.0 53 25-79 4-73 (172)
129 2g2c_A Putative molybdenum cof 90.7 0.51 1.7E-05 33.1 5.5 59 24-84 5-86 (167)
130 3rqi_A Response regulator prot 90.7 0.41 1.4E-05 33.0 4.9 81 23-105 6-87 (184)
131 2qsj_A DNA-binding response re 90.5 0.35 1.2E-05 31.9 4.4 82 24-106 3-87 (154)
132 1ys7_A Transcriptional regulat 90.5 0.72 2.5E-05 32.6 6.3 80 23-104 6-86 (233)
133 1tmy_A CHEY protein, TMY; chem 90.4 0.54 1.8E-05 29.4 5.0 80 24-105 2-83 (120)
134 2ark_A Flavodoxin; FMN, struct 90.4 1.5 5E-05 30.7 7.8 78 25-105 5-96 (188)
135 3eul_A Possible nitrate/nitrit 90.4 0.34 1.2E-05 31.9 4.2 88 16-105 7-97 (152)
136 3t6k_A Response regulator rece 90.3 0.83 2.8E-05 29.6 6.0 80 24-105 4-86 (136)
137 3iwt_A 178AA long hypothetical 90.3 1.1 3.6E-05 31.5 6.9 56 22-79 13-92 (178)
138 3pzy_A MOG; ssgcid, seattle st 90.2 0.35 1.2E-05 34.0 4.3 60 24-84 7-83 (164)
139 2gwr_A DNA-binding response re 90.1 1.1 3.7E-05 32.1 7.0 79 24-105 5-84 (238)
140 3cfy_A Putative LUXO repressor 90.1 0.72 2.5E-05 29.9 5.6 79 25-105 5-84 (137)
141 1y5e_A Molybdenum cofactor bio 90.0 0.65 2.2E-05 32.6 5.6 56 22-79 11-83 (169)
142 3to5_A CHEY homolog; alpha(5)b 89.9 0.63 2.2E-05 31.4 5.3 94 22-117 10-111 (134)
143 1mkz_A Molybdenum cofactor bio 89.9 0.68 2.3E-05 32.6 5.6 61 21-83 7-85 (172)
144 3kcn_A Adenylate cyclase homol 89.7 0.72 2.5E-05 30.3 5.4 81 23-106 3-85 (151)
145 1yio_A Response regulatory pro 89.6 0.8 2.7E-05 31.8 5.8 81 23-105 3-84 (208)
146 2is8_A Molybdopterin biosynthe 89.6 0.58 2E-05 32.7 5.0 50 33-84 19-79 (164)
147 1zgz_A Torcad operon transcrip 89.5 0.75 2.6E-05 28.8 5.2 78 24-104 2-80 (122)
148 3heb_A Response regulator rece 89.2 0.85 2.9E-05 29.9 5.5 82 23-106 3-98 (152)
149 2gk3_A Putative cytoplasmic pr 89.2 0.53 1.8E-05 35.2 4.9 64 38-103 43-124 (256)
150 1xhf_A DYE resistance, aerobic 89.0 1.3 4.4E-05 27.7 6.0 79 24-105 3-82 (123)
151 3hly_A Flavodoxin-like domain; 88.9 2.4 8.3E-05 29.0 7.8 78 25-104 1-89 (161)
152 3ilh_A Two component response 88.7 0.79 2.7E-05 29.5 4.9 82 23-106 8-101 (146)
153 1jbe_A Chemotaxis protein CHEY 88.7 1.2 4.2E-05 28.0 5.8 81 23-105 3-87 (128)
154 3mm4_A Histidine kinase homolo 88.5 1.2 4.1E-05 31.4 6.2 94 22-117 59-176 (206)
155 2pbq_A Molybdenum cofactor bio 88.2 1.2 4.2E-05 31.4 6.0 60 23-84 4-85 (178)
156 3c3m_A Response regulator rece 88.0 1.7 5.9E-05 27.9 6.3 80 24-105 3-85 (138)
157 2lpm_A Two-component response 87.9 0.16 5.5E-06 34.0 1.1 80 20-103 4-85 (123)
158 3l6u_A ABC-type sugar transpor 87.9 4.1 0.00014 29.5 8.9 78 21-104 5-96 (293)
159 3pfn_A NAD kinase; structural 87.7 1.6 5.4E-05 34.7 6.9 78 23-107 37-142 (365)
160 2zki_A 199AA long hypothetical 87.4 4.3 0.00015 28.2 8.5 77 25-104 5-114 (199)
161 2qv0_A Protein MRKE; structura 87.4 0.92 3.2E-05 29.3 4.6 82 22-105 7-91 (143)
162 1t0b_A THUA-like protein; treh 87.3 6.2 0.00021 29.4 9.7 76 40-118 37-120 (252)
163 3q9s_A DNA-binding response re 87.2 1.3 4.6E-05 32.1 5.9 80 23-105 36-116 (249)
164 1ydg_A Trp repressor binding p 87.2 2.7 9.2E-05 29.6 7.4 34 24-57 6-44 (211)
165 3m6m_D Sensory/regulatory prot 87.0 0.31 1.1E-05 32.1 2.1 82 22-105 12-98 (143)
166 3tb6_A Arabinose metabolism tr 86.8 7.1 0.00024 28.1 10.0 77 25-104 16-106 (298)
167 2a5l_A Trp repressor binding p 86.7 5.6 0.00019 27.4 8.8 77 25-104 6-115 (200)
168 2pjk_A 178AA long hypothetical 86.2 1.2 4.1E-05 31.6 5.0 62 21-84 12-98 (178)
169 3eqz_A Response regulator; str 86.1 0.53 1.8E-05 30.0 2.8 88 24-117 3-101 (135)
170 2hqr_A Putative transcriptiona 86.1 1 3.4E-05 31.7 4.5 76 25-105 1-76 (223)
171 2a9o_A Response regulator; ess 86.0 1.7 5.9E-05 26.8 5.3 78 25-105 2-80 (120)
172 3n53_A Response regulator rece 86.0 0.97 3.3E-05 29.1 4.1 80 24-106 3-85 (140)
173 3m9w_A D-xylose-binding peripl 85.9 2.3 7.7E-05 31.4 6.6 73 25-103 3-89 (313)
174 1uuy_A CNX1, molybdopterin bio 85.9 3.1 0.00011 28.9 7.0 57 21-79 2-82 (167)
175 1di6_A MOGA, molybdenum cofact 85.8 0.89 3E-05 32.9 4.1 61 24-84 3-83 (195)
176 3l49_A ABC sugar (ribose) tran 85.7 7.1 0.00024 28.1 9.2 76 23-104 4-93 (291)
177 4e5v_A Putative THUA-like prot 85.7 5 0.00017 30.4 8.5 81 23-107 3-96 (281)
178 1iow_A DD-ligase, DDLB, D-ALA\ 85.4 3.7 0.00013 30.3 7.6 52 24-75 2-61 (306)
179 1rtt_A Conserved hypothetical 85.2 5.3 0.00018 27.7 8.0 81 24-105 6-116 (193)
180 2jba_A Phosphate regulon trans 85.1 0.51 1.8E-05 29.7 2.4 81 24-106 2-85 (127)
181 1jlj_A Gephyrin; globular alph 85.0 2.7 9.1E-05 30.1 6.4 61 22-84 12-95 (189)
182 2oqr_A Sensory transduction pr 84.5 2 6.9E-05 30.2 5.5 80 24-106 4-84 (230)
183 3c97_A Signal transduction his 84.4 0.59 2E-05 30.3 2.4 80 24-105 10-95 (140)
184 2fz5_A Flavodoxin; alpha/beta 84.2 6.3 0.00022 25.3 9.7 74 27-103 2-86 (137)
185 3fni_A Putative diflavin flavo 83.4 3.5 0.00012 28.2 6.3 54 24-78 4-65 (159)
186 2vyc_A Biodegradative arginine 83.3 3.5 0.00012 35.5 7.4 82 25-108 1-96 (755)
187 5nul_A Flavodoxin; electron tr 83.2 5.9 0.0002 25.8 7.1 71 31-104 6-86 (138)
188 1f4p_A Flavodoxin; electron tr 83.1 2.6 8.8E-05 27.9 5.3 79 25-106 1-93 (147)
189 3eq2_A Probable two-component 83.0 1.5 5E-05 34.1 4.6 80 23-104 4-84 (394)
190 3k4h_A Putative transcriptiona 83.0 5.7 0.0002 28.7 7.6 57 21-78 5-79 (292)
191 3h1g_A Chemotaxis protein CHEY 82.8 3.5 0.00012 26.0 5.8 81 23-105 4-89 (129)
192 2qzj_A Two-component response 82.8 0.84 2.9E-05 29.5 2.7 78 24-104 4-82 (136)
193 3g1w_A Sugar ABC transporter; 82.6 9.7 0.00033 27.6 8.8 76 24-104 4-93 (305)
194 4eg0_A D-alanine--D-alanine li 82.2 3.9 0.00013 30.7 6.6 53 22-74 11-71 (317)
195 2rgy_A Transcriptional regulat 82.1 4.5 0.00015 29.5 6.8 77 22-104 6-97 (290)
196 1dc7_A NTRC, nitrogen regulati 82.0 0.99 3.4E-05 28.1 2.7 79 24-104 3-82 (124)
197 3s40_A Diacylglycerol kinase; 82.0 12 0.00041 28.2 9.3 89 22-116 6-109 (304)
198 3b6i_A Flavoprotein WRBA; flav 81.8 5.1 0.00017 27.6 6.7 33 25-57 2-40 (198)
199 3ff4_A Uncharacterized protein 81.7 9 0.00031 25.3 7.6 33 23-55 3-38 (122)
200 1p6q_A CHEY2; chemotaxis, sign 81.6 0.64 2.2E-05 29.4 1.7 80 23-104 5-88 (129)
201 2q62_A ARSH; alpha/beta, flavo 81.6 12 0.00043 27.6 9.1 86 19-105 29-144 (247)
202 3cs3_A Sugar-binding transcrip 81.3 3.6 0.00012 29.7 5.9 56 21-77 5-66 (277)
203 3f6r_A Flavodoxin; FMN binding 81.1 4 0.00014 27.0 5.7 80 25-106 2-94 (148)
204 1s8n_A Putative antiterminator 81.0 3.6 0.00012 28.3 5.7 80 23-105 12-93 (205)
205 3kke_A LACI family transcripti 81.0 14 0.00048 27.0 10.2 76 22-104 13-101 (303)
206 3uug_A Multiple sugar-binding 81.0 9.3 0.00032 28.1 8.3 53 24-77 3-68 (330)
207 2vzf_A NADH-dependent FMN redu 80.7 3.6 0.00012 28.9 5.6 78 25-105 3-110 (197)
208 3clk_A Transcription regulator 80.5 9 0.00031 27.7 8.0 78 21-104 5-95 (290)
209 3rot_A ABC sugar transporter, 80.4 6 0.0002 28.9 7.0 54 24-77 3-70 (297)
210 1mb3_A Cell division response 80.2 0.96 3.3E-05 28.3 2.2 79 25-105 2-83 (124)
211 3qvl_A Putative hydantoin race 80.2 7.5 0.00026 28.8 7.4 89 24-119 1-113 (245)
212 1ehs_A STB, heat-stable entero 80.1 0.22 7.4E-06 27.3 -0.8 16 100-115 32-47 (48)
213 3egc_A Putative ribose operon 80.0 14 0.00049 26.5 10.7 76 21-104 5-94 (291)
214 3kjx_A Transcriptional regulat 78.9 6.3 0.00022 29.5 6.8 75 22-103 66-153 (344)
215 1dcf_A ETR1 protein; beta-alph 78.7 1.7 5.7E-05 27.8 3.1 34 21-54 4-37 (136)
216 3b2n_A Uncharacterized protein 78.7 2.5 8.7E-05 26.9 4.0 78 25-104 4-84 (133)
217 3t8y_A CHEB, chemotaxis respon 78.4 3.1 0.00011 27.7 4.5 84 19-105 20-106 (164)
218 2bon_A Lipid kinase; DAG kinas 78.3 12 0.0004 28.6 8.3 85 25-115 30-129 (332)
219 2fep_A Catabolite control prot 78.3 16 0.00053 26.5 8.7 74 24-104 16-102 (289)
220 1jr2_A Uroporphyrinogen-III sy 78.2 1.5 5.2E-05 32.8 3.1 62 16-77 13-85 (286)
221 2q9u_A A-type flavoprotein; fl 78.2 14 0.00049 28.5 8.9 79 24-105 256-349 (414)
222 2fn9_A Ribose ABC transporter, 78.0 17 0.00057 26.1 9.5 52 25-77 3-67 (290)
223 2r25_B Osmosensing histidine p 77.4 8.1 0.00028 24.5 6.2 80 24-105 2-89 (133)
224 3k9c_A Transcriptional regulat 77.2 11 0.00038 27.3 7.6 74 24-104 12-95 (289)
225 1zh2_A KDP operon transcriptio 77.0 1.2 4.2E-05 27.6 1.9 77 25-104 2-79 (121)
226 3h75_A Periplasmic sugar-bindi 76.6 20 0.0007 26.6 9.1 75 24-105 3-94 (350)
227 1i3c_A Response regulator RCP1 76.3 10 0.00034 24.5 6.5 80 24-105 8-99 (149)
228 3h5o_A Transcriptional regulat 76.3 15 0.00053 27.2 8.3 74 23-103 61-147 (339)
229 2x7x_A Sensor protein; transfe 75.7 21 0.00073 26.3 9.5 77 22-104 4-94 (325)
230 3nbm_A PTS system, lactose-spe 75.7 8.6 0.00029 25.0 5.9 74 22-104 4-85 (108)
231 3kyj_B CHEY6 protein, putative 75.3 1.3 4.4E-05 28.7 1.8 86 17-105 6-95 (145)
232 3bbl_A Regulatory protein of L 75.2 20 0.0007 25.7 9.1 59 40-104 30-94 (287)
233 3ksm_A ABC-type sugar transpor 75.1 9.6 0.00033 27.0 6.6 73 26-103 2-90 (276)
234 1ykg_A SIR-FP, sulfite reducta 75.1 5.7 0.00019 27.1 5.2 48 25-74 10-62 (167)
235 3hs3_A Ribose operon repressor 74.3 8.1 0.00028 27.9 6.1 54 22-76 8-75 (277)
236 2hsg_A Glucose-resistance amyl 74.2 16 0.00054 27.1 7.9 75 22-104 58-146 (332)
237 1g8l_A Molybdopterin biosynthe 73.9 5.6 0.00019 31.9 5.4 44 34-79 203-254 (411)
238 3c3k_A Alanine racemase; struc 73.8 22 0.00076 25.5 9.9 76 21-104 5-93 (285)
239 3jy6_A Transcriptional regulat 73.5 22 0.00075 25.3 10.5 74 23-105 6-93 (276)
240 1dz3_A Stage 0 sporulation pro 72.4 4.8 0.00016 25.3 4.0 80 24-105 2-85 (130)
241 3cu5_A Two component transcrip 72.1 5.8 0.0002 25.5 4.4 79 25-105 3-85 (141)
242 8abp_A L-arabinose-binding pro 71.7 14 0.00048 26.7 6.9 74 25-103 3-88 (306)
243 1ny5_A Transcriptional regulat 71.5 4.3 0.00015 31.8 4.2 79 25-105 1-80 (387)
244 3qk7_A Transcriptional regulat 71.0 27 0.00091 25.3 9.3 59 40-104 32-95 (294)
245 1t0i_A YLR011WP; FMN binding p 71.0 7.7 0.00026 26.7 5.1 38 68-106 84-125 (191)
246 3e3m_A Transcriptional regulat 70.9 7.5 0.00026 29.3 5.4 74 23-103 69-155 (355)
247 3huu_A Transcription regulator 70.7 10 0.00034 27.7 5.9 77 21-104 19-113 (305)
248 3gv0_A Transcriptional regulat 70.5 23 0.00079 25.5 7.9 56 22-77 6-75 (288)
249 3gbv_A Putative LACI-family tr 70.4 15 0.0005 26.5 6.7 56 22-77 6-78 (304)
250 3hcw_A Maltose operon transcri 69.7 9.8 0.00033 27.7 5.7 37 40-77 34-77 (295)
251 1a04_A Nitrate/nitrite respons 69.4 5.4 0.00018 27.6 4.0 81 23-105 4-87 (215)
252 1ag9_A Flavodoxin; electron tr 69.0 24 0.00083 24.0 7.3 79 25-106 1-88 (175)
253 2ohh_A Type A flavoprotein FPR 68.4 21 0.00073 27.3 7.6 82 23-105 255-351 (404)
254 3o1i_D Periplasmic protein TOR 68.4 12 0.00041 27.0 5.9 75 24-103 5-93 (304)
255 4fe7_A Xylose operon regulator 68.2 8.8 0.0003 29.8 5.4 74 22-104 23-104 (412)
256 1czn_A Flavodoxin; FMN binding 67.9 7.2 0.00025 26.3 4.3 78 25-105 1-88 (169)
257 1uz5_A MOEA protein, 402AA lon 67.8 4.8 0.00017 32.2 3.8 46 34-79 206-257 (402)
258 3n0r_A Response regulator; sig 67.7 9.4 0.00032 28.5 5.3 81 22-105 158-241 (286)
259 3brs_A Periplasmic binding pro 67.3 23 0.00079 25.2 7.3 75 24-103 5-96 (289)
260 1p2f_A Response regulator; DRR 67.0 5.1 0.00018 27.8 3.5 74 25-105 3-79 (220)
261 3g85_A Transcriptional regulat 66.4 29 0.00099 24.8 7.6 78 21-104 8-98 (289)
262 1wu2_A MOEA protein, molybdopt 65.8 5.6 0.00019 31.7 3.8 50 35-84 211-267 (396)
263 1eiw_A Hypothetical protein MT 65.0 5.8 0.0002 26.1 3.2 65 28-103 7-73 (111)
264 3edo_A Flavoprotein, putative 64.8 17 0.00057 24.3 5.7 29 23-51 2-33 (151)
265 3e61_A Putative transcriptiona 64.3 35 0.0012 24.1 8.0 53 23-76 7-72 (277)
266 3miz_A Putative transcriptiona 63.6 14 0.00047 26.9 5.4 55 22-77 11-79 (301)
267 3jvd_A Transcriptional regulat 63.1 19 0.00064 26.9 6.2 55 22-77 62-128 (333)
268 2fts_A Gephyrin; gephyrin, neu 62.8 8.7 0.0003 30.8 4.4 57 34-91 207-269 (419)
269 4ici_A Putative flavoprotein; 62.7 23 0.00078 24.3 6.2 29 24-52 13-43 (171)
270 3dbi_A Sugar-binding transcrip 62.6 44 0.0015 24.6 9.5 55 22-77 59-128 (338)
271 1sqs_A Conserved hypothetical 62.6 32 0.0011 24.6 7.3 32 25-56 2-41 (242)
272 1yob_A Flavodoxin 2, flavodoxi 62.3 14 0.00047 25.4 5.0 47 26-74 2-52 (179)
273 2bmv_A Flavodoxin; electron tr 62.1 17 0.00057 24.4 5.3 47 25-74 2-50 (164)
274 2i2x_B MTAC, methyltransferase 61.9 28 0.00096 25.6 6.9 97 22-119 121-227 (258)
275 3soz_A ORF 245 protein, cytopl 61.3 7.8 0.00027 29.0 3.7 34 40-75 38-77 (248)
276 2rjo_A Twin-arginine transloca 61.3 31 0.0011 25.4 7.1 54 23-77 4-72 (332)
277 2qu7_A Putative transcriptiona 60.7 43 0.0015 23.9 7.7 56 22-78 6-73 (288)
278 1vi6_A 30S ribosomal protein S 60.5 29 0.001 25.3 6.5 76 23-105 67-146 (208)
279 4hs4_A Chromate reductase; tri 60.4 23 0.00079 25.0 6.0 99 22-121 4-145 (199)
280 3gyb_A Transcriptional regulat 60.1 16 0.00055 26.0 5.2 54 23-77 4-68 (280)
281 3d7n_A Flavodoxin, WRBA-like p 59.8 18 0.00061 25.1 5.2 82 21-105 3-99 (193)
282 2h3h_A Sugar ABC transporter, 58.6 37 0.0013 24.7 7.1 60 40-104 22-89 (313)
283 1obo_A Flavodoxin; electron tr 58.1 27 0.00094 23.3 5.8 78 25-105 2-88 (169)
284 1qo0_D AMIR; binding protein, 57.4 17 0.00057 24.7 4.7 77 23-105 11-87 (196)
285 3d02_A Putative LACI-type tran 57.1 50 0.0017 23.6 8.4 76 24-104 4-93 (303)
286 2dri_A D-ribose-binding protei 57.1 49 0.0017 23.4 8.6 37 40-77 23-66 (271)
287 2fvy_A D-galactose-binding per 56.9 51 0.0017 23.6 10.4 60 40-105 24-92 (309)
288 2yxb_A Coenzyme B12-dependent 56.6 19 0.00066 24.6 4.9 92 23-117 17-123 (161)
289 2iks_A DNA-binding transcripti 56.4 52 0.0018 23.5 10.7 76 22-104 18-107 (293)
290 2zuv_A Lacto-N-biose phosphory 56.3 27 0.00093 30.2 6.5 80 40-121 473-570 (759)
291 1yt5_A Inorganic polyphosphate 56.1 5.6 0.00019 29.5 2.1 34 67-107 40-74 (258)
292 1dbq_A Purine repressor; trans 55.8 52 0.0018 23.3 9.8 76 23-104 6-94 (289)
293 3eag_A UDP-N-acetylmuramate:L- 55.7 63 0.0022 24.3 10.1 80 24-105 4-115 (326)
294 1tjy_A Sugar transport protein 55.7 58 0.002 23.8 8.0 52 25-77 4-69 (316)
295 3usb_A Inosine-5'-monophosphat 55.6 53 0.0018 26.8 8.0 54 67-120 317-386 (511)
296 3afo_A NADH kinase POS5; alpha 55.3 7.5 0.00026 31.0 2.8 34 68-107 114-149 (388)
297 3c3w_A Two component transcrip 54.6 4.7 0.00016 28.4 1.4 79 25-105 2-83 (225)
298 3dzd_A Transcriptional regulat 54.6 7 0.00024 30.4 2.5 78 25-104 1-79 (368)
299 3brq_A HTH-type transcriptiona 54.0 56 0.0019 23.1 8.9 77 22-104 17-108 (296)
300 4hv4_A UDP-N-acetylmuramate--L 53.9 85 0.0029 25.2 9.4 57 22-78 20-91 (494)
301 3r2g_A Inosine 5'-monophosphat 53.9 46 0.0016 26.1 7.1 95 24-120 112-226 (361)
302 3bch_A 40S ribosomal protein S 53.0 23 0.00077 26.7 5.0 74 24-104 104-181 (253)
303 2h0a_A TTHA0807, transcription 51.9 37 0.0013 23.9 6.0 58 40-104 21-85 (276)
304 2jk1_A HUPR, hydrogenase trans 51.9 19 0.00065 22.6 4.0 77 25-104 2-79 (139)
305 1wcw_A Uroporphyrinogen III sy 51.7 11 0.00038 27.3 3.1 94 19-118 3-112 (261)
306 3d8t_A Uroporphyrinogen-III sy 51.3 6.9 0.00024 29.1 1.9 103 8-119 20-138 (286)
307 1e5d_A Rubredoxin\:oxygen oxid 50.9 78 0.0027 24.0 9.8 81 24-104 252-343 (402)
308 1t5b_A Acyl carrier protein ph 50.8 55 0.0019 22.1 9.1 33 25-57 2-44 (201)
309 3luf_A Two-component system re 50.3 29 0.001 25.0 5.2 94 22-117 122-223 (259)
310 1qpz_A PURA, protein (purine n 50.0 74 0.0025 23.4 9.9 77 22-104 56-145 (340)
311 2a6a_A Hypothetical protein TM 49.8 7.9 0.00027 28.2 2.0 45 68-113 66-112 (218)
312 1a2o_A CHEB methylesterase; ba 48.4 26 0.00088 27.0 4.9 79 24-105 3-84 (349)
313 3u5c_A 40S ribosomal protein S 47.9 70 0.0024 24.0 7.0 74 24-104 70-147 (252)
314 1w25_A Stalked-cell differenti 47.5 15 0.00051 28.7 3.4 78 25-104 2-82 (459)
315 3klb_A Putative flavoprotein; 47.2 35 0.0012 23.0 4.9 36 68-104 78-115 (162)
316 3hr4_A Nitric oxide synthase, 46.8 17 0.00057 26.6 3.4 67 3-74 22-92 (219)
317 2ioy_A Periplasmic sugar-bindi 46.7 75 0.0026 22.5 8.9 37 40-77 23-66 (283)
318 1gud_A ALBP, D-allose-binding 46.6 77 0.0026 22.6 7.5 60 40-104 23-91 (288)
319 3bil_A Probable LACI-family tr 45.8 90 0.0031 23.1 8.4 54 23-77 65-131 (348)
320 3d8u_A PURR transcriptional re 45.7 75 0.0026 22.2 8.7 58 40-104 25-89 (275)
321 3klo_A Transcriptional regulat 44.8 14 0.00047 25.8 2.6 80 22-105 5-91 (225)
322 2zkq_b 40S ribosomal protein S 44.0 76 0.0026 24.4 6.8 74 24-104 71-148 (295)
323 1ccw_A Protein (glutamate muta 43.5 29 0.001 22.9 4.0 78 39-119 22-116 (137)
324 1e2b_A Enzyme IIB-cellobiose; 43.2 61 0.0021 20.5 5.4 36 40-76 23-58 (106)
325 2l2q_A PTS system, cellobiose- 43.1 61 0.0021 20.4 5.9 51 25-76 5-59 (109)
326 2o20_A Catabolite control prot 42.8 96 0.0033 22.6 11.1 55 22-77 61-128 (332)
327 3bfj_A 1,3-propanediol oxidore 42.5 61 0.0021 25.1 6.2 79 25-104 34-141 (387)
328 1tvm_A PTS system, galactitol- 42.3 65 0.0022 20.5 5.8 52 25-77 22-78 (113)
329 3llv_A Exopolyphosphatase-rela 42.1 23 0.00077 22.8 3.2 88 24-117 6-118 (141)
330 3fvw_A Putative NAD(P)H-depend 42.1 82 0.0028 21.7 8.5 32 25-56 3-40 (192)
331 2c6q_A GMP reductase 2; TIM ba 41.5 1.2E+02 0.0041 23.4 8.9 95 24-120 132-250 (351)
332 4dik_A Flavoprotein; TM0755, e 40.6 61 0.0021 25.6 6.0 55 23-78 264-328 (410)
333 3mwd_B ATP-citrate synthase; A 40.5 54 0.0019 25.4 5.6 81 26-107 170-261 (334)
334 3ezx_A MMCP 1, monomethylamine 40.3 31 0.0011 24.8 3.9 94 24-119 92-200 (215)
335 3ibs_A Conserved hypothetical 40.3 35 0.0012 23.5 4.1 50 70-122 114-196 (218)
336 2him_A L-asparaginase 1; hydro 39.4 26 0.00087 27.5 3.6 38 67-104 252-291 (358)
337 1y80_A Predicted cobalamin bin 39.2 59 0.002 22.8 5.3 53 24-77 88-148 (210)
338 3r6m_A YEAZ, resuscitation pro 38.9 12 0.00043 27.1 1.6 43 68-111 56-100 (213)
339 2yq5_A D-isomer specific 2-hyd 38.8 68 0.0023 24.8 5.9 50 25-75 2-52 (343)
340 3lk7_A UDP-N-acetylmuramoylala 38.6 1.4E+02 0.0049 23.4 9.3 35 21-56 6-40 (451)
341 1ycg_A Nitric oxide reductase; 38.5 1.2E+02 0.0041 22.9 7.3 51 24-74 251-308 (398)
342 3o74_A Fructose transport syst 38.5 98 0.0033 21.5 10.6 38 40-78 24-68 (272)
343 3svl_A Protein YIEF; E. coli C 38.4 87 0.003 21.7 6.0 99 23-122 3-145 (193)
344 2vk2_A YTFQ, ABC transporter p 38.4 1.1E+02 0.0037 22.0 9.8 74 25-103 3-89 (306)
345 1jg7_A BGT, DNA beta-glucosylt 37.9 77 0.0026 23.9 5.8 57 25-81 1-71 (351)
346 1rli_A Trp repressor binding p 37.8 77 0.0026 21.1 5.6 29 25-54 4-35 (184)
347 1vl0_A DTDP-4-dehydrorhamnose 37.2 54 0.0018 23.5 4.9 65 15-80 3-75 (292)
348 3rpe_A MDAB, modulator of drug 36.7 63 0.0022 23.3 5.1 53 25-78 26-92 (218)
349 3iz6_A 40S ribosomal protein S 35.7 1.1E+02 0.0038 23.6 6.5 30 68-104 122-152 (305)
350 3uhf_A Glutamate racemase; str 35.5 1.4E+02 0.0047 22.3 9.4 87 20-113 20-127 (274)
351 4g65_A TRK system potassium up 35.2 12 0.00043 30.1 1.1 54 24-79 3-56 (461)
352 4fx5_A VON willebrand factor t 34.8 76 0.0026 25.5 5.8 52 71-122 183-241 (464)
353 3fwz_A Inner membrane protein 33.8 50 0.0017 21.3 3.9 90 24-118 7-121 (140)
354 2wc1_A Flavodoxin; electron tr 33.6 33 0.0011 23.3 3.1 48 25-74 2-53 (182)
355 2qh8_A Uncharacterized protein 33.0 1.4E+02 0.0047 21.5 8.2 73 23-104 7-97 (302)
356 2gel_A Putative GRAM negative 33.0 45 0.0015 24.2 3.8 43 68-110 55-99 (231)
357 1o2d_A Alcohol dehydrogenase, 32.9 70 0.0024 24.7 5.1 61 25-86 41-115 (371)
358 2r85_A PURP protein PF1517; AT 32.6 50 0.0017 24.3 4.1 32 24-57 2-33 (334)
359 3lkb_A Probable branched-chain 32.5 1.2E+02 0.0042 22.5 6.4 78 23-103 142-230 (392)
360 2ayx_A Sensor kinase protein R 32.1 28 0.00096 25.0 2.6 35 20-54 7-41 (254)
361 2fzv_A Putative arsenical resi 31.5 1.2E+02 0.0041 22.8 6.1 83 22-105 56-169 (279)
362 2hna_A Protein MIOC, flavodoxi 31.2 1E+02 0.0035 19.9 5.2 78 26-108 3-93 (147)
363 2d6f_A Glutamyl-tRNA(Gln) amid 31.0 1.1E+02 0.0039 24.5 6.2 36 67-104 324-361 (435)
364 2q5c_A NTRC family transcripti 31.0 1.4E+02 0.0046 20.9 6.9 97 23-120 3-122 (196)
365 3ffs_A Inosine-5-monophosphate 30.9 2E+02 0.0068 22.8 8.6 95 24-120 156-273 (400)
366 4gi5_A Quinone reductase; prot 30.7 71 0.0024 24.0 4.7 37 20-56 18-61 (280)
367 3sgz_A Hydroxyacid oxidase 2; 30.6 1.2E+02 0.0042 23.6 6.2 84 35-120 203-299 (352)
368 3g79_A NDP-N-acetyl-D-galactos 30.2 1.5E+02 0.0052 23.9 6.9 54 22-76 351-422 (478)
369 2gek_A Phosphatidylinositol ma 30.1 79 0.0027 23.4 4.9 39 19-57 15-61 (406)
370 3bbn_B Ribosomal protein S2; s 29.9 46 0.0016 24.6 3.4 30 23-52 63-92 (231)
371 3e8x_A Putative NAD-dependent 29.6 74 0.0025 22.0 4.5 64 19-82 16-98 (236)
372 3hut_A Putative branched-chain 29.3 1.6E+02 0.0056 21.3 7.0 78 23-103 138-226 (358)
373 3ecs_A Translation initiation 29.2 1.6E+02 0.0054 22.6 6.5 83 18-106 141-232 (315)
374 3sho_A Transcriptional regulat 29.2 1.3E+02 0.0044 20.1 6.3 78 25-105 40-122 (187)
375 1o7j_A L-asparaginase; atomic 28.9 38 0.0013 26.1 3.0 36 67-104 240-277 (327)
376 4a5o_A Bifunctional protein fo 28.7 1.9E+02 0.0065 21.9 7.5 56 21-77 158-213 (286)
377 3ojo_A CAP5O; rossmann fold, c 28.7 1.8E+02 0.006 23.2 6.9 55 22-77 313-383 (431)
378 2hpv_A FMN-dependent NADH-azor 28.5 1.4E+02 0.0048 20.3 7.4 33 25-57 2-45 (208)
379 1b93_A Protein (methylglyoxal 28.5 81 0.0028 21.7 4.3 46 65-111 79-127 (152)
380 2wlt_A L-asparaginase; hydrola 28.2 40 0.0014 26.0 3.0 36 67-104 241-278 (332)
381 4b4t_W RPN10, 26S proteasome r 28.0 44 0.0015 25.1 3.1 45 71-116 110-163 (268)
382 3czc_A RMPB; alpha/beta sandwi 28.0 70 0.0024 20.2 3.7 49 24-76 18-75 (110)
383 3nxk_A Cytoplasmic L-asparagin 27.7 54 0.0019 25.4 3.6 35 67-103 244-280 (334)
384 2yvk_A Methylthioribose-1-phos 27.4 1.7E+02 0.0057 23.0 6.5 84 17-105 200-294 (374)
385 3bul_A Methionine synthase; tr 27.3 1E+02 0.0036 25.8 5.5 75 24-101 98-183 (579)
386 3ius_A Uncharacterized conserv 27.1 1.6E+02 0.0055 20.8 6.0 56 24-81 5-76 (286)
387 3r5x_A D-alanine--D-alanine li 26.9 99 0.0034 22.4 4.9 51 24-75 3-62 (307)
388 3hn7_A UDP-N-acetylmuramate-L- 26.8 2.5E+02 0.0085 22.6 9.7 56 23-78 18-90 (524)
389 3ce9_A Glycerol dehydrogenase; 26.8 95 0.0032 23.6 4.9 75 25-104 35-119 (354)
390 1wsa_A Asparaginase, asparagin 26.7 44 0.0015 25.7 3.0 36 67-104 238-275 (330)
391 2h4a_A YRAM (HI1655); perplasm 26.6 23 0.00078 26.9 1.3 82 23-107 121-211 (325)
392 4da9_A Short-chain dehydrogena 26.3 81 0.0028 22.9 4.3 29 26-54 30-59 (280)
393 1t9k_A Probable methylthioribo 26.3 1.7E+02 0.0058 22.7 6.3 84 17-104 175-268 (347)
394 1nns_A L-asparaginase II; amid 26.2 46 0.0016 25.6 3.0 36 67-104 234-271 (326)
395 3p2o_A Bifunctional protein fo 26.1 2.1E+02 0.0073 21.6 7.7 56 21-77 157-212 (285)
396 4ei7_A Plasmid replication pro 26.0 1.1E+02 0.0039 24.0 5.3 95 12-107 3-121 (389)
397 3oa2_A WBPB; oxidoreductase, s 25.9 2E+02 0.007 21.3 8.3 31 23-53 2-32 (318)
398 4avf_A Inosine-5'-monophosphat 25.8 2.6E+02 0.0089 22.5 9.2 95 24-120 241-359 (490)
399 4id9_A Short-chain dehydrogena 25.7 1.9E+02 0.0067 21.0 6.7 65 17-82 12-91 (347)
400 2yvq_A Carbamoyl-phosphate syn 25.6 1.4E+02 0.0049 19.7 5.1 47 64-112 92-140 (143)
401 4iin_A 3-ketoacyl-acyl carrier 25.3 56 0.0019 23.5 3.2 42 13-54 18-59 (271)
402 1rrm_A Lactaldehyde reductase; 25.1 57 0.0019 25.2 3.3 65 25-90 32-109 (386)
403 3otg_A CALG1; calicheamicin, T 25.0 77 0.0026 23.7 4.1 59 16-75 12-74 (412)
404 4b4u_A Bifunctional protein fo 24.9 2.3E+02 0.008 21.6 7.5 58 19-77 174-231 (303)
405 4gnr_A ABC transporter substra 24.9 2E+02 0.0069 20.9 7.1 79 22-103 141-228 (353)
406 2xzm_B RPS0E; ribosome, transl 24.8 63 0.0022 24.0 3.4 31 68-105 114-145 (241)
407 3l5o_A Uncharacterized protein 24.7 1E+02 0.0036 23.1 4.6 51 21-77 138-195 (270)
408 3ipc_A ABC transporter, substr 24.7 1.8E+02 0.006 21.1 6.0 78 23-103 137-225 (356)
409 2f48_A Diphosphate--fructose-6 24.5 18 0.00061 30.3 0.3 16 21-36 69-84 (555)
410 3j20_B 30S ribosomal protein S 24.4 1.3E+02 0.0044 21.6 4.9 30 68-104 111-141 (202)
411 3fro_A GLGA glycogen synthase; 24.2 1.1E+02 0.0037 22.8 4.8 33 24-56 2-43 (439)
412 3ha2_A NADPH-quinone reductase 24.1 1.8E+02 0.0061 20.0 5.6 54 25-79 1-61 (177)
413 3ngx_A Bifunctional protein fo 23.9 2.3E+02 0.008 21.3 6.8 55 22-77 148-202 (276)
414 3o9z_A Lipopolysaccaride biosy 23.9 2.2E+02 0.0076 21.0 8.7 31 23-53 2-32 (312)
415 2b9s_B DNA topoisomerase I-lik 23.3 10 0.00034 22.5 -1.0 12 8-19 16-27 (62)
416 3u95_A Glycoside hydrolase, fa 23.3 57 0.0019 26.4 3.1 28 89-117 167-197 (477)
417 2g1u_A Hypothetical protein TM 23.1 1.6E+02 0.0053 19.1 4.9 34 22-56 17-50 (155)
418 2nli_A Lactate oxidase; flavoe 23.1 1.5E+02 0.005 23.0 5.4 84 35-120 215-311 (368)
419 1f0k_A MURG, UDP-N-acetylgluco 23.0 80 0.0027 23.1 3.7 34 24-57 6-43 (364)
420 2xhz_A KDSD, YRBH, arabinose 5 22.9 1.1E+02 0.0039 20.3 4.3 88 25-116 50-143 (183)
421 3l07_A Bifunctional protein fo 22.9 2.5E+02 0.0085 21.2 7.7 56 21-77 158-213 (285)
422 1gtz_A 3-dehydroquinate dehydr 22.8 1.9E+02 0.0067 20.0 5.7 35 44-78 44-82 (156)
423 2m1z_A LMO0427 protein; homolo 22.7 1.6E+02 0.0054 18.9 6.5 51 25-77 3-66 (106)
424 2rir_A Dipicolinate synthase, 22.7 1.2E+02 0.0041 22.3 4.7 33 22-55 5-37 (300)
425 2yjn_A ERYCIII, glycosyltransf 22.6 2.6E+02 0.0088 21.3 6.8 54 22-77 18-76 (441)
426 1agx_A Glutaminase-asparaginas 22.5 78 0.0027 24.4 3.6 36 67-104 238-276 (331)
427 3s2y_A Chromate reductase; ura 28.1 18 0.00063 25.5 0.0 32 23-54 5-42 (199)
428 4evq_A Putative ABC transporte 22.3 2.3E+02 0.0079 20.6 7.5 80 22-104 149-239 (375)
429 2duw_A Putative COA-binding pr 22.1 1.4E+02 0.0048 19.6 4.5 51 24-75 13-77 (145)
430 1ypf_A GMP reductase; GUAC, pu 22.0 1.4E+02 0.0047 22.7 5.0 95 25-120 121-237 (336)
431 3ckm_A YRAM (HI1655), LPOA; pe 22.0 43 0.0015 24.7 2.0 80 23-105 123-211 (327)
432 2hig_A 6-phospho-1-fructokinas 22.0 18 0.0006 29.9 -0.2 13 24-36 97-109 (487)
433 1byk_A Protein (trehalose oper 21.9 2E+02 0.0068 19.7 6.8 37 40-77 24-67 (255)
434 1lss_A TRK system potassium up 21.7 1.3E+02 0.0044 18.5 4.2 30 25-55 5-34 (140)
435 1wls_A L-asparaginase; structu 21.7 92 0.0031 23.9 3.9 36 67-103 222-260 (328)
436 3h5t_A Transcriptional regulat 21.5 2.5E+02 0.0084 20.7 9.7 56 22-77 66-137 (366)
437 2iuy_A Avigt4, glycosyltransfe 21.4 77 0.0026 23.1 3.3 19 38-56 37-55 (342)
438 3gfs_A FMN-dependent NADPH-azo 21.3 1.8E+02 0.0063 19.2 5.5 52 68-120 63-131 (174)
439 1va0_A Uroporphyrin-III C-meth 21.3 1.5E+02 0.0051 21.0 4.8 34 23-56 74-111 (239)
440 1jye_A Lactose operon represso 21.1 2.5E+02 0.0085 20.6 7.3 54 23-76 60-126 (349)
441 3sy8_A ROCR; TIM barrel phosph 20.9 35 0.0012 26.4 1.3 51 24-74 3-55 (400)
442 3hn2_A 2-dehydropantoate 2-red 20.9 2.5E+02 0.0086 20.6 8.7 46 68-116 69-118 (312)
443 2kyr_A Fructose-like phosphotr 20.9 1.8E+02 0.0061 18.8 6.5 52 24-77 5-69 (111)
444 1y81_A Conserved hypothetical 20.8 1.8E+02 0.0063 18.9 6.4 53 22-75 12-76 (138)
445 3l9w_A Glutathione-regulated p 20.7 68 0.0023 25.3 3.0 89 24-117 4-117 (413)
446 4a26_A Putative C-1-tetrahydro 20.7 2.8E+02 0.0097 21.1 6.7 56 21-77 162-219 (300)
447 2x4g_A Nucleoside-diphosphate- 20.7 2.1E+02 0.0073 20.6 5.7 31 23-54 12-43 (342)
448 2a0u_A Initiation factor 2B; S 20.7 2.3E+02 0.008 22.3 6.1 83 18-105 205-298 (383)
449 3sg0_A Extracellular ligand-bi 20.6 2.5E+02 0.0086 20.4 7.2 80 22-104 157-247 (386)
450 1kjq_A GART 2, phosphoribosylg 20.5 1.3E+02 0.0044 22.7 4.5 33 23-56 10-42 (391)
451 3gg9_A D-3-phosphoglycerate de 20.4 72 0.0025 24.7 3.1 8 112-119 180-187 (352)
452 1t5o_A EIF2BD, translation ini 20.3 2.6E+02 0.0089 21.7 6.3 83 18-105 174-266 (351)
453 2vqe_B 30S ribosomal protein S 20.3 52 0.0018 24.7 2.1 31 68-105 158-189 (256)
454 4amg_A Snogd; transferase, pol 20.3 2.6E+02 0.009 20.5 7.0 34 22-56 20-58 (400)
455 4e4t_A Phosphoribosylaminoimid 20.1 1.6E+02 0.0055 22.9 5.1 36 21-57 32-67 (419)
456 1a4i_A Methylenetetrahydrofola 20.1 2.9E+02 0.01 21.0 7.9 55 22-77 163-217 (301)
457 4had_A Probable oxidoreductase 20.1 2.3E+02 0.0078 21.0 5.8 54 21-75 20-93 (350)
No 1
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.92 E-value=1.1e-24 Score=160.78 Aligned_cols=103 Identities=44% Similarity=0.759 Sum_probs=86.2
Q ss_pred EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch---HHHHHHHHhCCCCCEEEE
Q 032797 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG---ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 27 i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~---~~~~~i~~~~~~~PvLGI 103 (133)
|+||||+++|+.++.++|++.|+++++++.++.+.+++...++||+||+||++++.+.. ...+++++++.++|+|||
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGI 83 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGV 83 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEE
Confidence 99999999999999999999999999999764455566534799999999999988742 234777777778999999
Q ss_pred echHHHHHHHhCCeeeeccCCcceee
Q 032797 104 CMGLQCIGEAFGDCAFSAWCHAWKKF 129 (133)
Q Consensus 104 ClG~QlLa~a~GG~v~~~~~~~~g~~ 129 (133)
|+|||+|+.++||++.+.+...+|..
T Consensus 84 C~G~QlL~~~~gg~v~~~~~~~~g~~ 109 (195)
T 1qdl_B 84 CLGHQAIGYAFGAKIRRARKVFHGKI 109 (195)
T ss_dssp THHHHHHHHHTTCEEEEEEEEEEEEE
T ss_pred ehHHHHHHHHhCCEEeccCCCcCCCc
Confidence 99999999999999998765555644
No 2
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.92 E-value=3.9e-24 Score=156.64 Aligned_cols=105 Identities=24% Similarity=0.436 Sum_probs=89.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
|||+|||++++|+.++.++|++.|+++++++.+. +.+++...++||+||+||+ ++.+.....++++++ +.++|+|||
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGI 78 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGI 78 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEE
Confidence 5799999999999999999999999999998763 5556654479999999999 777655557788875 788999999
Q ss_pred echHHHHHHHhCCeeeeccCCcceeeee
Q 032797 104 CMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 104 ClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
|+|||+|+.++||++.+.+..++|+.++
T Consensus 79 C~G~Q~l~~~~gg~v~~~~~~~~G~~~~ 106 (189)
T 1wl8_A 79 CLGHQLIAKFFGGKVGRGEKAEYSLVEI 106 (189)
T ss_dssp THHHHHHHHHHTCEEEECSCCSCEEEEE
T ss_pred cHHHHHHHHHhCCceecCCCcccCceeE
Confidence 9999999999999999977666776654
No 3
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.92 E-value=1.5e-24 Score=159.57 Aligned_cols=106 Identities=31% Similarity=0.548 Sum_probs=84.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc----CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~----~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (133)
+||+||||++||++++.++|++.|+++++++++ .+.+++.. .+.+++|++|||+++.+.+...++++.+++++|+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~-~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~Pi 79 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH-IPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPI 79 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT-SCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCE
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC-CCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCE
Confidence 489999999999999999999999999999876 33344421 2456799999999998766555666666778999
Q ss_pred EEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 101 FGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 101 LGIClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
||||+|||+|+.++||++.+.+..++|+++.
T Consensus 80 lGIC~G~Qll~~~~Gg~v~~~~~~~~g~~~~ 110 (192)
T 1i1q_B 80 IGICLGHQAIVEAYGGYVGQAGEILHGKATS 110 (192)
T ss_dssp EEETHHHHHHHHHTSCCCCC---CCSSEEEE
T ss_pred EEECcChHHHHHHhCCEEEeCCCcEecceeE
Confidence 9999999999999999998876667777653
No 4
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.91 E-value=3.2e-24 Score=182.91 Aligned_cols=122 Identities=20% Similarity=0.287 Sum_probs=99.2
Q ss_pred ccccccccc--cccc-------cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 7 VPISKSLYL--DDKK-------SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 7 ~~~~~~~~~--~~~~-------~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
.++|.||+. +... ....+++|+|||++++|++++.+++++.|+++++++++.. .+. .++|+|||+||
T Consensus 420 ~~~~~~w~~~~~~~~~~~~~~~~~~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~--~~~--~~~DgIIlsGG 495 (645)
T 3r75_A 420 EGIADFWFRPYGGRQGEMADELAELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA--VDL--ARYDVVVMGPG 495 (645)
T ss_dssp TTSCSGGGSCSSCC--------CCSTTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC--CCG--GGCSEEEECCC
T ss_pred cccchhhhcccccccccccccccCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc--ccc--cCCCEEEECCC
Confidence 468999997 4332 2346789999999999999999999999999999998632 122 37999999999
Q ss_pred CCCcCCchH-----HHHHHHHh-CCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeeee
Q 032797 78 PGAPQDSGI-----SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSCV 132 (133)
Q Consensus 78 ~~~~~d~~~-----~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~~ 132 (133)
|++|++.+. ..++|+++ +.++|+||||+|||+|+.++||+|.+.+...+|+.+.+
T Consensus 496 Pg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~~~~G~~~~i 556 (645)
T 3r75_A 496 PGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREVPNQGIQVEI 556 (645)
T ss_dssp SSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEE
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCCCcccccceEE
Confidence 999988762 34567763 67899999999999999999999999887777776543
No 5
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.88 E-value=3.5e-23 Score=154.86 Aligned_cols=107 Identities=24% Similarity=0.323 Sum_probs=84.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC-CCCcCCchHHHHHHHH-hCCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG-PGAPQDSGISLQTVLE-LGPTVP 99 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG-~~~~~d~~~~~~~i~~-~~~~~P 99 (133)
-..+||+++|++++|+.++.++|+++|+++++++++. +.+++. ++|||||+|| |+++++......+.+. .+.++|
T Consensus 11 ~~~~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~-~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~P 87 (212)
T 2a9v_A 11 HHMLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI-DSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYP 87 (212)
T ss_dssp CCCCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS-CGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSC
T ss_pred cccceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC-CHHHHh--CCCEEEECCCCCCCCcccccchhHHHHHHhCCCC
Confidence 3457999999999999999999999999999998753 455554 5999999999 8988875221112222 256899
Q ss_pred EEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 100 LFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 100 vLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
+||||+|||+|+.++||++.+.+..++|+..+
T Consensus 88 iLGIC~G~Qll~~~lGg~v~~~~~~~~G~~~v 119 (212)
T 2a9v_A 88 ILGICVGAQFIALHFGASVVKAKHPEFGKTKV 119 (212)
T ss_dssp EEEETHHHHHHHHHTTCEEEEEEEEEEEEEEE
T ss_pred EEEEChHHHHHHHHhCCEEEcCCCcccCceee
Confidence 99999999999999999999876666666543
No 6
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.88 E-value=2.8e-22 Score=161.82 Aligned_cols=102 Identities=20% Similarity=0.422 Sum_probs=86.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG 102 (133)
.++|+++|+ +..+++.++|+++|++++++|++ .+.+++...++|||||+|||++|.+.....++++++ +.++|+||
T Consensus 190 ~~~V~viD~--G~k~ni~r~L~~~G~~v~vvp~~-~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILG 266 (379)
T 1a9x_B 190 PFHVVAYDF--GAKRNILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFG 266 (379)
T ss_dssp CEEEEEEES--SCCHHHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEE
T ss_pred CCEEEEEEC--CChHHHHHHHHHCCCEEEEEecc-CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEE
Confidence 468999999 56688999999999999999986 456677655799999999999999877777888885 67899999
Q ss_pred EechHHHHHHHhCCeeeeccCCccee
Q 032797 103 VCMGLQCIGEAFGDCAFSAWCHAWKK 128 (133)
Q Consensus 103 IClG~QlLa~a~GG~v~~~~~~~~g~ 128 (133)
||+|||+|+.++||++.+.+...+|.
T Consensus 267 IClG~QLLa~A~GG~v~k~~~gh~g~ 292 (379)
T 1a9x_B 267 ICLGHQLLALASGAKTVKMKFGHHGG 292 (379)
T ss_dssp ETHHHHHHHHHTTCCEEEEEEEEEEE
T ss_pred ECchHHHHHHHhCcEEEecccccccC
Confidence 99999999999999999886433443
No 7
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.88 E-value=6.2e-23 Score=171.46 Aligned_cols=106 Identities=19% Similarity=0.336 Sum_probs=78.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLG 102 (133)
..+|+|||++++|++++.++|++.|+.++++|++ .+.+++...++|||||+|||+++++.+.. ...+. ++.++|+||
T Consensus 10 ~~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~-~~~~~i~~~~~dgIILsGGp~sv~~~~~~-~~~~~~~~~~~PvLG 87 (527)
T 3tqi_A 10 QHRILILDFGSQYAQLIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTL-RAPAFIFEIGCPVLG 87 (527)
T ss_dssp CSEEEEEECSCTTHHHHHHHHHHHTCEEEEEETT-CCSSSSTTTCCSEEEECCCCC----------CCCSTTTSSSCEEE
T ss_pred CCeEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHHhcCCCEEEECCcCcccccCCCh-hhHHHHHhcCCCEEE
Confidence 4689999999999999999999999999999875 44555654578999999999998865432 22233 377999999
Q ss_pred EechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 103 VCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 103 IClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
||+|||+|+.++||+|.+.+..++|+..+
T Consensus 88 IC~G~Qlla~~lGG~V~~~~~~e~G~~~v 116 (527)
T 3tqi_A 88 ICYGMQTMAYQLGGKVNRTAKAEFGHAQL 116 (527)
T ss_dssp ETHHHHHHHHHSSSCBC-----CEEEEEE
T ss_pred EChHHHHHHHHcCCeEEeCCCccccceEE
Confidence 99999999999999999988778887754
No 8
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.87 E-value=2.6e-22 Score=168.76 Aligned_cols=106 Identities=17% Similarity=0.322 Sum_probs=88.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH---HHHHHHHh-CCCCCE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI---SLQTVLEL-GPTVPL 100 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~---~~~~i~~~-~~~~Pv 100 (133)
.+|+||||+++|++++.++|++.|+.+++++++ .+.+++...++|||||+|||+++++.+. ...+++.+ ++++|+
T Consensus 8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~Pv 86 (556)
T 3uow_A 8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPI 86 (556)
T ss_dssp CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCE
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCE
Confidence 689999999999999999999999999999985 5566776568999999999999886542 12344443 568999
Q ss_pred EEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 101 FGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 101 LGIClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
||||+|||+|+.++||+|.+....++|...+
T Consensus 87 LGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l 117 (556)
T 3uow_A 87 FGICYGMQEIAVQMNGEVKKSKTSEYGCTDV 117 (556)
T ss_dssp EEETHHHHHHHHHTTCEEEEEEEEEEEEEEE
T ss_pred EEECHHHHHHHHHhCCcEecCCCcccCCcce
Confidence 9999999999999999999987778887653
No 9
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.87 E-value=3.5e-22 Score=166.04 Aligned_cols=104 Identities=21% Similarity=0.366 Sum_probs=84.3
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEe
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC 104 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC 104 (133)
||+|||++++|++++.+++++.|+.++++|++ .+.+++...++|||||+|||+++++.... ...+. ++.++|+||||
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~-~~~~~i~~~~~dgiIlsGGp~s~~~~~~~-~~~~~~~~~~~PvLGIC 78 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAP-RPDPRLFSSGLPLLGIC 78 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHTTTCCEEEEETT-CCHHHHHTTCCSEEEECCCSSCSSCTTCC-CCCGGGGCSSCCEEEET
T ss_pred CEEEEECCCcHHHHHHHHHHHCCCEEEEEECC-CCHHHHHhcCCCEEEECCCCchhccCCCc-chHHHHHhCCCCEEEEC
Confidence 48999999999999999999999999999986 46777765567999999999998865421 11123 37789999999
Q ss_pred chHHHHHHHhCCeeeeccCCcceeeee
Q 032797 105 MGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 105 lG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
+|||+|+.++||+|.+.+.+++|+..+
T Consensus 79 ~G~Qlla~~~GG~v~~~~~~e~G~~~v 105 (503)
T 2ywb_A 79 YGMQLLAQELGGRVERAGRAEYGKALL 105 (503)
T ss_dssp HHHHHHHHTTTCEEECC---CEEEEEC
T ss_pred HHHHHHHHHhCCeEeeCCCCccceEEE
Confidence 999999999999999987777887654
No 10
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.87 E-value=2.1e-22 Score=151.47 Aligned_cols=105 Identities=17% Similarity=0.301 Sum_probs=76.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLG 102 (133)
..+|+|||++++|..++.++|++.|+++++++.+ .+.+++...++|||||+||++++++.... .+.+. ++.++|+||
T Consensus 24 ~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~-~~~~~l~~~~~dglil~Gg~~~~~~~~~~-~~~~~~~~~~~PilG 101 (218)
T 2vpi_A 24 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDPAIFTIGKPVLG 101 (218)
T ss_dssp TTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTT-CCHHHHHHHTCSEEEEEC---------CC-CCCGGGGTSSCCEEE
T ss_pred CCeEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CChHHHhhcCCCEEEECCCCcccccccch-hHHHHHHHcCCCEEE
Confidence 4689999999999999999999999999999875 34556654479999999999877643211 11223 367899999
Q ss_pred EechHHHHHHHhCCeeeeccCCcceeee
Q 032797 103 VCMGLQCIGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 103 IClG~QlLa~a~GG~v~~~~~~~~g~~~ 130 (133)
||+|||+|+.++||+|.+.+..+.|+..
T Consensus 102 IC~G~Qll~~~~GG~v~~~~~~~~G~~~ 129 (218)
T 2vpi_A 102 ICYGMQMMNKVFGGTVHKKSVREDGVFN 129 (218)
T ss_dssp ETHHHHHHHHHTTCCEEEEEECSCEEEE
T ss_pred EcHHHHHHHHHhCCceEeCCCCcccEEE
Confidence 9999999999999999987655555543
No 11
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.87 E-value=5.1e-22 Score=165.82 Aligned_cols=106 Identities=24% Similarity=0.434 Sum_probs=88.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLG 102 (133)
.++|+|||++++|++++.++|++.|+.++++|++ .+.+++...++|||||+|||+++++.... ...+. ++.++|+||
T Consensus 7 ~~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~-~~~~~i~~~~~dgiILsGGp~s~~~~~~~-~~~~~~~~~g~PvLG 84 (525)
T 1gpm_A 7 KHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSP-RAPQYVFEAGVPVFG 84 (525)
T ss_dssp SSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCC-CCCGGGGTSSSCEEE
T ss_pred CCEEEEEECCCccHHHHHHHHHHCCCEEEEEECC-CCHHHHhccCCCEEEECCcCccccccCCc-chHHHHHHCCCCEEE
Confidence 4689999999999999999999999999999986 45666754478999999999998865421 11222 367899999
Q ss_pred EechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 103 VCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 103 IClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
||+|||+|+.++||+|.+.+.+++|+..+
T Consensus 85 IC~G~Qlla~~~GG~V~~~~~~e~G~~~v 113 (525)
T 1gpm_A 85 VCYGMQTMAMQLGGHVEASNEREFGYAQV 113 (525)
T ss_dssp ETHHHHHHHHHHTCEEECCSSCEEEEEEE
T ss_pred EChHHHHHHHHcCCEEEeCCCcccceEEE
Confidence 99999999999999999988778887654
No 12
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.83 E-value=2.4e-21 Score=166.38 Aligned_cols=117 Identities=17% Similarity=0.304 Sum_probs=74.9
Q ss_pred ccccccccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHH
Q 032797 13 LYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (133)
Q Consensus 13 ~~~~~~~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~ 92 (133)
.|+.+......+.+|+|||++++|++.+.+.|++.|+.++++|++ .+.+++...++|||||+|||+++++.+.. .+.+
T Consensus 18 ~~~~~~~~~~~~~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~-~~~e~i~~~~~dGIILsGGp~s~~~~~~~-~~~~ 95 (697)
T 2vxo_A 18 LYFQSMGHHHYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDP 95 (697)
T ss_dssp -----------CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETT-CCHHHHHHHTCSEEEEEECC-------CC-CCCG
T ss_pred hhhhhhhccCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CCHHHHhhcCCCEEEECCCCCcccCccch-hHHH
Confidence 345544434556789999999999999999999999999999986 45667754589999999999988754321 0112
Q ss_pred H-hCCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 93 E-LGPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 93 ~-~~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
. ++.++|+||||+|||+|+.++||+|.+.+..++|+..+
T Consensus 96 ~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~~~~e~G~~~v 135 (697)
T 2vxo_A 96 AIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNI 135 (697)
T ss_dssp GGTTSSCCEEEEEHHHHHHHHHTTCCBCC-------CEEE
T ss_pred HHHhCCCCEEEECHHHHHHHHHhCCeEeecCCCccceEEE
Confidence 2 36789999999999999999999999887667776543
No 13
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.83 E-value=1.8e-20 Score=141.97 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=80.0
Q ss_pred CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCC--HHHHccCCCCEEEECCCCCCcCCc---------hHHHHHHH
Q 032797 25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDS---------GISLQTVL 92 (133)
Q Consensus 25 ~~i~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~--~~~l~~~~~DgvIl~GG~~~~~d~---------~~~~~~i~ 92 (133)
|||++|++.... ...+.+++++.|+++.+++..... ++++ .++|+|||+|||++|.+. ....++|+
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~~--~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~ 78 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDI--DDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQ 78 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSCG--GGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCCc--cccCEEEECCCCCCcccccccCcccchHHHHHHHH
Confidence 689999875433 457889999999999988763211 1122 379999999999997532 12467787
Q ss_pred Hh-CCCCCEEEEechHHHHHHHhCCeeeeccCCcceeeee
Q 032797 93 EL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFSC 131 (133)
Q Consensus 93 ~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~~ 131 (133)
++ +.++|+||||+|||+|+.++||+|.+.+.+++|+..+
T Consensus 79 ~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~~~G~~~v 118 (236)
T 3l7n_A 79 KAAKSEKIIVGVCLGAQLMGVAYGADYLHSPKKEIGNYLI 118 (236)
T ss_dssp HHHHTTCEEEEETHHHHHHHHHTTCCCEEEEEEEEEEEEE
T ss_pred HHHHcCCCEEEEchHHHHHHHHhCCEEecCCCceeeeEEE
Confidence 74 7889999999999999999999999887666666543
No 14
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.83 E-value=1.4e-20 Score=144.46 Aligned_cols=105 Identities=19% Similarity=0.287 Sum_probs=81.1
Q ss_pred CCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCCC--HHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-C
Q 032797 24 KNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-G 95 (133)
Q Consensus 24 ~~~i~vid~~~-~~~~~i~~~l~~~G~~~~v~~~~~~~--~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~ 95 (133)
+++|++|++.. +...++.++|++.|+++++++.+... .+++ .++|+|||+|||+++++.. ...++|+++ +
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~--~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~ 80 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEI--RDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVA 80 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCG--GGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCcc--ccCCEEEECCCCCcccccchHHHHHHHHHHHHHH
Confidence 56899998754 55778999999999999998854211 1223 3799999999999887542 245677764 6
Q ss_pred CCCCEEEEechHHHHHHHhCCeeeeccCCcceeee
Q 032797 96 PTVPLFGVCMGLQCIGEAFGDCAFSAWCHAWKKFS 130 (133)
Q Consensus 96 ~~~PvLGIClG~QlLa~a~GG~v~~~~~~~~g~~~ 130 (133)
.++|+||||+|+|+|+.++||+|.+.+.++.|+..
T Consensus 81 ~~~PvlGIC~G~Qll~~~lGG~V~~~~~~e~G~~~ 115 (250)
T 3m3p_A 81 QRVPVIGHCLGGQLLAKAMGGEVTDSPHAEIGWVR 115 (250)
T ss_dssp HTCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEE
T ss_pred cCCCEEEECHHHHHHHHHhCCEEEeCCCCceeeEE
Confidence 78999999999999999999999988655555543
No 15
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.81 E-value=2e-20 Score=138.68 Aligned_cols=93 Identities=18% Similarity=0.320 Sum_probs=69.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHH---HHHHHh-CCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISL---QTVLEL-GPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~---~~i~~~-~~~~P 99 (133)
..+|+|||++.++.+++.++|+++|+++++++. .+++. ++|+|||+ |++++.+..... .+++.+ +.++|
T Consensus 2 ~~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~----~~~l~--~~D~lilP-G~g~~~~~~~~~~~~~~i~~~~~~~~P 74 (211)
T 4gud_A 2 TQNVVIIDTGCANISSVKFAIERLGYAVTISRD----PQVVL--AADKLFLP-GVGTASEAMKNLTERDLIELVKRVEKP 74 (211)
T ss_dssp -CCEEEECCCCTTHHHHHHHHHHTTCCEEEECC----HHHHH--HCSEEEEC-CCSCHHHHHHHHHHTTCHHHHHHCCSC
T ss_pred CCEEEEEECCCChHHHHHHHHHHCCCEEEEECC----HHHHh--CCCEEEEC-CCCCHHHHHHHHHhcChHHHHHHcCCC
Confidence 357999999999999999999999999998742 56665 68999996 556665443321 234443 57899
Q ss_pred EEEEechHHHHHHHhCCeeeeccC
Q 032797 100 LFGVCMGLQCIGEAFGDCAFSAWC 123 (133)
Q Consensus 100 vLGIClG~QlLa~a~GG~v~~~~~ 123 (133)
+||||+|||+|+.++|+++.+...
T Consensus 75 vlGIClG~QlL~~~~g~~~~~~~~ 98 (211)
T 4gud_A 75 LLGICLGMQLLGKLSEEKGQKADE 98 (211)
T ss_dssp EEEETHHHHTTSSEECCC----CC
T ss_pred EEEEchhHhHHHHHhCCcccccCC
Confidence 999999999999999998876543
No 16
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.80 E-value=2.4e-19 Score=136.17 Aligned_cols=108 Identities=13% Similarity=0.246 Sum_probs=80.3
Q ss_pred cCCCCCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCCC--HHHHccCCCCEEEECCCCCCcCCch------HHHHH
Q 032797 20 SKNNKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG------ISLQT 90 (133)
Q Consensus 20 ~~~~~~~i~vid~~~-~~~~~i~~~l~~~G~~~~v~~~~~~~--~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~ 90 (133)
-.-...||++|++.. .+..++.++++..|+++.+++++... .+++ .++|+|||+|||.++++.. ...++
T Consensus 8 ~~~~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l--~~~Dglil~GG~~~~~~~~~~~~l~~~~~~ 85 (239)
T 1o1y_A 8 HHHHHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQL 85 (239)
T ss_dssp --CCCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHHH
T ss_pred cccceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccch--hcCCEEEECCCCccccCCccChhHHHHHHH
Confidence 345567999997754 34567899999999999887764211 1122 3799999999998887642 24567
Q ss_pred HHHh-CCCCCEEEEechHHHHHHHhCCeeeeccC-Ccceee
Q 032797 91 VLEL-GPTVPLFGVCMGLQCIGEAFGDCAFSAWC-HAWKKF 129 (133)
Q Consensus 91 i~~~-~~~~PvLGIClG~QlLa~a~GG~v~~~~~-~~~g~~ 129 (133)
|+++ ++++|+||||+|||+|+.++||+|.+.+. ++.|+.
T Consensus 86 i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~~ 126 (239)
T 1o1y_A 86 IEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWY 126 (239)
T ss_dssp HHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEE
T ss_pred HHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCccccE
Confidence 7774 67899999999999999999999998765 555543
No 17
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=1.2e-18 Score=126.96 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=67.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH----HHHHHHHhCCCCCE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLELGPTVPL 100 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~----~~~~i~~~~~~~Pv 100 (133)
|||+|||+++++.. +.++|++.|+++.+++.+ +++. ++|+|||+||++++++... ..+.++ ++++|+
T Consensus 1 m~i~vl~~~g~~~~-~~~~l~~~G~~~~~~~~~----~~~~--~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~Pi 71 (186)
T 2ywj_A 1 MIIGVLAIQGDVEE-HEEAIKKAGYEAKKVKRV----EDLE--GIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPI 71 (186)
T ss_dssp CEEEEECSSSCCHH-HHHHHHHTTSEEEEECSG----GGGT--TCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCE
T ss_pred CEEEEEecCcchHH-HHHHHHHCCCEEEEECCh----HHhc--cCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcE
Confidence 68999999887775 458999999999888642 3443 7999999999876653221 234444 778999
Q ss_pred EEEechHHHHHHHhCCeee
Q 032797 101 FGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 101 LGIClG~QlLa~a~GG~v~ 119 (133)
||||+|||+|+.++||++.
T Consensus 72 lGIC~G~Qll~~~~gg~~~ 90 (186)
T 2ywj_A 72 LGTCAGMVLLSKGTGINQI 90 (186)
T ss_dssp EEETHHHHHHSSCCSSCCC
T ss_pred EEECHHHHHHHHHhCCCcC
Confidence 9999999999999999853
No 18
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.71 E-value=5.4e-18 Score=124.96 Aligned_cols=92 Identities=13% Similarity=0.187 Sum_probs=71.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc------hHHHHHHHHh-CC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GP 96 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~------~~~~~~i~~~-~~ 96 (133)
+++|+|||++.++..++.++|++.|+++++++.+ +++. ++|+|||+| ++++.+. ..+.++|+++ ++
T Consensus 2 ~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~d~lil~G-~g~~~~~~~~l~~~~~~~~i~~~~~~ 74 (200)
T 1ka9_H 2 RMKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP----KAHE--EADLLVLPG-QGHFGQVMRAFQESGFVERVRRHLER 74 (200)
T ss_dssp -CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST----TSCS--SCSEEEECC-CSCHHHHHHTTSSSCTHHHHHHHHHT
T ss_pred ccEEEEEeCCCccHHHHHHHHHHCCCeEEEecCh----HHcc--cCCEEEECC-CCcHHHHHHHHHhcCHHHHHHHHHHc
Confidence 4789999987778888999999999999988643 2333 799999955 4554321 2246778774 77
Q ss_pred CCCEEEEechHHHHHHH---hC---------Ceeeecc
Q 032797 97 TVPLFGVCMGLQCIGEA---FG---------DCAFSAW 122 (133)
Q Consensus 97 ~~PvLGIClG~QlLa~a---~G---------G~v~~~~ 122 (133)
++|+||||+|||+|+.+ +| |++.+.+
T Consensus 75 ~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~ 112 (200)
T 1ka9_H 75 GLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFR 112 (200)
T ss_dssp TCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECC
T ss_pred CCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECC
Confidence 89999999999999999 68 8887764
No 19
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.70 E-value=9.2e-18 Score=123.12 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=66.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCCC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTVP 99 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~~-~~~~P 99 (133)
|||+|+|+.++|...+ ++|++.|+++.+++.. +++. ++|+||++||+.++++.. .+.++++++ ++++|
T Consensus 2 m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p 74 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHI-HAIEACGAAGLVVKRP----EQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKP 74 (196)
T ss_dssp CEEEEECSSSCCHHHH-HHHHHTTCEEEEECSG----GGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cEEEEEEccCCcHHHH-HHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCc
Confidence 6899999988887655 8999999998887642 3443 699999999986554321 125677775 78899
Q ss_pred EEEEechHHHHHHHhCCee
Q 032797 100 LFGVCMGLQCIGEAFGDCA 118 (133)
Q Consensus 100 vLGIClG~QlLa~a~GG~v 118 (133)
+||||+|||+|+.++||++
T Consensus 75 ilgIC~G~q~l~~~~gg~~ 93 (196)
T 2nv0_A 75 MFGTCAGLIILAKEIAGSD 93 (196)
T ss_dssp EEEETHHHHHHSBCCC---
T ss_pred EEEECHHHHHHHHHhcCCC
Confidence 9999999999999999975
No 20
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.69 E-value=5.6e-17 Score=124.04 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=62.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCC-CHHHHccCCCCEEEECCCCC-CcC--Cc--------------hHHHHHHHHh-CCCC
Q 032797 38 YNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPG-APQ--DS--------------GISLQTVLEL-GPTV 98 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~-~~~--d~--------------~~~~~~i~~~-~~~~ 98 (133)
..+.++++++|+.+.++|+... ..+++. .++|||||+||++ +|. .. ...+++++++ +.++
T Consensus 31 ~~~~~~l~~aG~~pv~lp~~~~~~~~~~l-~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~ 109 (254)
T 3fij_A 31 QRYVDAIQKVGGFPIALPIDDPSTAVQAI-SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGK 109 (254)
T ss_dssp HHHHHHHHHHTCEEEEECCCCGGGHHHHH-HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEEEeCCCchHHHHHH-hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCC
Confidence 4578889999999999987521 122222 2799999999986 332 11 1145677774 7899
Q ss_pred CEEEEechHHHHHHHhCCeeeec
Q 032797 99 PLFGVCMGLQCIGEAFGDCAFSA 121 (133)
Q Consensus 99 PvLGIClG~QlLa~a~GG~v~~~ 121 (133)
|+||||+|||+|+.++||++.+.
T Consensus 110 PiLGIC~G~Qll~~a~Gg~v~~~ 132 (254)
T 3fij_A 110 PIFAICRGMQLVNVALGGTLYQD 132 (254)
T ss_dssp CEEEETHHHHHHHHHTTCCEESS
T ss_pred CEEEECHHHHHHHHHhCCceecc
Confidence 99999999999999999999864
No 21
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.69 E-value=6.8e-18 Score=126.32 Aligned_cols=91 Identities=14% Similarity=0.234 Sum_probs=70.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GP 96 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~----~~~~~~i~~~-~~ 96 (133)
..+++|+|+++.+.|.. +.++|++.|+++.+++.. +++. ++|+|||+||++++.+. ..+.++|+++ ++
T Consensus 21 ~~~~~I~il~~~~~~~~-~~~~l~~~G~~~~~~~~~----~~l~--~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~ 93 (219)
T 1q7r_A 21 QSNMKIGVLGLQGAVRE-HVRAIEACGAEAVIVKKS----EQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAA 93 (219)
T ss_dssp CCCCEEEEESCGGGCHH-HHHHHHHTTCEEEEECSG----GGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcHH-HHHHHHHCCCEEEEECCH----HHHh--hCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHc
Confidence 45689999998766765 458899999999888752 3443 79999999998655432 1135677775 78
Q ss_pred CCCEEEEechHHHHHHHhCCeee
Q 032797 97 TVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 97 ~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
++|+||||+|||+|+.++||++.
T Consensus 94 ~~PilGIC~G~QlL~~~~gg~~~ 116 (219)
T 1q7r_A 94 GKPMFGTCAGLILLAKRIVGYDE 116 (219)
T ss_dssp TCCEEEETTHHHHHEEEEESSCC
T ss_pred CCeEEEECHHHHHHHHHhCCCCc
Confidence 89999999999999999999763
No 22
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.67 E-value=8.3e-17 Score=118.87 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=73.6
Q ss_pred CCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC--------chHHHHHHHHh
Q 032797 24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLEL 94 (133)
Q Consensus 24 ~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d--------~~~~~~~i~~~ 94 (133)
.++|+|+++++.+. .++.++|++.|+++++++.++ ++ .++|+|||+||+..+.+ ...+.++++++
T Consensus 2 ~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~--~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (213)
T 3d54_D 2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD----KL--DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKA 75 (213)
T ss_dssp CCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC----CC--SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC----Cc--ccCCEEEECCCCchhhhhccccccccHHHHHHHHHH
Confidence 46899999987775 778999999999999887641 22 37999999999653332 12246777774
Q ss_pred -CCCCCEEEEechHHHHHHH--hCCeeeecc
Q 032797 95 -GPTVPLFGVCMGLQCIGEA--FGDCAFSAW 122 (133)
Q Consensus 95 -~~~~PvLGIClG~QlLa~a--~GG~v~~~~ 122 (133)
++++|+||||+|+|+|+.+ +||++.+.+
T Consensus 76 ~~~~~pilgIC~G~qlLa~aGll~g~v~~~~ 106 (213)
T 3d54_D 76 AERGKLIMGICNGFQILIEMGLLKGALLQNS 106 (213)
T ss_dssp HHHTCEEEECHHHHHHHHHHTSSCSEEECCS
T ss_pred HHCCCEEEEECHHHHHHHHcCCCCCCeecCC
Confidence 6789999999999999999 999998764
No 23
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.67 E-value=4.4e-17 Score=119.92 Aligned_cols=83 Identities=17% Similarity=0.090 Sum_probs=65.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhCC-----CeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHH
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELG-----YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE 93 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G-----~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~ 93 (133)
|||+|||++.++..++.++|++.| +++++++.++ + .++|+|||+|| +++.+.. .+.++|++
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~----~---~~~dglilpG~-g~~~~~~~~l~~~~~~~~i~~ 72 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPR----N---DLYDLLFIPGV-GHFGEGMRRLRENDLIDFVRK 72 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCC----S---SCCSEEEECCC-SCSHHHHHHHHHTTCHHHHHH
T ss_pred CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCc----c---cCCCEEEECCC-CcHHHHHHHHHhhCHHHHHHH
Confidence 689999988778889999999999 8998887531 2 37999999664 5543321 13467777
Q ss_pred h-CCCCCEEEEechHHHHHHHhC
Q 032797 94 L-GPTVPLFGVCMGLQCIGEAFG 115 (133)
Q Consensus 94 ~-~~~~PvLGIClG~QlLa~a~G 115 (133)
+ ++++|+||||+|||+|+.++|
T Consensus 73 ~~~~~~PilGIC~G~Qll~~~~g 95 (201)
T 1gpw_B 73 HVEDERYVVGVCLGMQLLFEESE 95 (201)
T ss_dssp HHHTTCEEEEETHHHHTTSSEET
T ss_pred HHHcCCeEEEEChhHHHHHHhhc
Confidence 5 678999999999999999996
No 24
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.64 E-value=4.9e-16 Score=122.42 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=62.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCch------HHHHHHHHh-C-C-CCCEEEEechH
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG------ISLQTVLEL-G-P-TVPLFGVCMGL 107 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~~------~~~~~i~~~-~-~-~~PvLGIClG~ 107 (133)
++.++|+++|+.+++++.+. +.+++.. .++|||||+||++++.+.. .+.+.+++. + . ++|+||||+||
T Consensus 56 ~~~~~l~~~G~~~~vv~~~~-~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~ 134 (315)
T 1l9x_A 56 SYVKYLESAGARVVPVRLDL-TEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF 134 (315)
T ss_dssp HHHHHHHHTTCEEEEECSSC-CHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH
T ss_pred HHHHHHHHCCCEEEEEecCC-CHHHHHHHHhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHH
Confidence 57899999999999998753 4444422 2699999999998876542 133444443 2 2 69999999999
Q ss_pred HHHHHHhCCeeeecc
Q 032797 108 QCIGEAFGDCAFSAW 122 (133)
Q Consensus 108 QlLa~a~GG~v~~~~ 122 (133)
|+|+.++||++....
T Consensus 135 Qll~~a~GG~~~~~~ 149 (315)
T 1l9x_A 135 EELSLLISGECLLTA 149 (315)
T ss_dssp HHHHHHHHSSCCCEE
T ss_pred HHHHHHhCCcccccc
Confidence 999999999976544
No 25
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.63 E-value=5.9e-17 Score=126.32 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=68.1
Q ss_pred ccCCCCCeEEEE-EC-CCCc-hHHHHHHHHhCCC----eEEEEeCCCC---------CHHH-------HccCCCCEEEEC
Q 032797 19 KSKNNKNPIIVI-DN-YDSF-TYNLCQYMGELGY----HFEVYRNDEL---------TVEE-------LKRKNPRGVLIS 75 (133)
Q Consensus 19 ~~~~~~~~i~vi-d~-~~~~-~~~i~~~l~~~G~----~~~v~~~~~~---------~~~~-------l~~~~~DgvIl~ 75 (133)
..+...++|+|| |+ +.++ ..++.++|+++|+ ++.+...+.. +.++ + .++|||||+
T Consensus 20 ~~~~~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~dgiil~ 97 (289)
T 2v4u_A 20 FQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKL--CKADGILVP 97 (289)
T ss_dssp ---CEEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHH--HHCSEEEEC
T ss_pred hCcCCceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHH--hhCCEEEec
Confidence 344445799999 77 5555 5578899988764 3344433211 1121 3 269999999
Q ss_pred CCCCCcCCchHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeee
Q 032797 76 PGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 76 GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
||++++.. ....++++++ +.++|+||||+|||+|+.++||++.
T Consensus 98 GG~~~~~~-~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~ 141 (289)
T 2v4u_A 98 GGFGIRGT-LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCL 141 (289)
T ss_dssp SCCSSTTH-HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHS
T ss_pred CCCCchhH-HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhcccc
Confidence 99987443 3355677775 6789999999999999999999985
No 26
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.63 E-value=8.5e-17 Score=134.97 Aligned_cols=94 Identities=22% Similarity=0.256 Sum_probs=70.2
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-----CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-----~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (133)
.+.++|+|+++.+.+.++..+.|+++.+.+.+.. ..++.. .++|||||+||++++...+ .+++++++ ++++|
T Consensus 309 yv~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L-~~~DGIILpGGfGd~~~~g-~i~~ir~a~e~~iP 386 (550)
T 1vco_A 309 YVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEG-KVRAAQYARERKIP 386 (550)
T ss_dssp CC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHH-HHHHHHHHHHTTCC
T ss_pred eEEEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHH-hcCCEEEECCCCCCcchhh-hHHHHHHHHHCCCc
Confidence 3456688888888888888888999988865421 122222 3799999999999886533 34677764 67899
Q ss_pred EEEEechHHHHHHHhCCeeeec
Q 032797 100 LFGVCMGLQCIGEAFGDCAFSA 121 (133)
Q Consensus 100 vLGIClG~QlLa~a~GG~v~~~ 121 (133)
+||||+|||+|+.++||++.+.
T Consensus 387 iLGICLGmQlL~~a~Gg~v~~l 408 (550)
T 1vco_A 387 YLGICLGLQIAVIEFARNVAGL 408 (550)
T ss_dssp EEEETHHHHHHHHHHHHHTSCC
T ss_pred EEEECcCHHHHHHHhCcccccC
Confidence 9999999999999999988754
No 27
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.62 E-value=3.1e-16 Score=116.32 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=64.3
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GP 96 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~----~~~~~~i~~~-~~ 96 (133)
...++|+|+|+ ..+...+.++|++.|+++.+++.. +++. ++|+|||+||+.+.++. ..+.++|+++ ++
T Consensus 18 ~~~~~I~ii~~-~~~~~~~~~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~ 90 (208)
T 2iss_D 18 GSHMKIGVLGV-QGDVREHVEALHKLGVETLIVKLP----EQLD--MVDGLILPGGESTTMIRILKEMDMDEKLVERINN 90 (208)
T ss_dssp --CCEEEEECS-SSCHHHHHHHHHHTTCEEEEECSG----GGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCcEEEEEEC-CCchHHHHHHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHC
Confidence 44579999997 445556788899999998887642 3453 69999999985332221 1135677775 67
Q ss_pred CCCEEEEechHHHHHHHhCCe
Q 032797 97 TVPLFGVCMGLQCIGEAFGDC 117 (133)
Q Consensus 97 ~~PvLGIClG~QlLa~a~GG~ 117 (133)
++|+||||+|||+|+.++||+
T Consensus 91 g~PilGIC~G~QlL~~~~gg~ 111 (208)
T 2iss_D 91 GLPVFATCAGVILLAKRIKNY 111 (208)
T ss_dssp TCCEEEETHHHHHHEEEEC--
T ss_pred CCeEEEECHHHHHHHHHcCCC
Confidence 899999999999999999993
No 28
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.60 E-value=2e-16 Score=122.41 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=64.2
Q ss_pred CeEEEE-EC----CCCc---hHHHHHHHHhCCCeEEEEeCCCCC--------H-HHHccCCCCEEEECCCCCCcCCchHH
Q 032797 25 NPIIVI-DN----YDSF---TYNLCQYMGELGYHFEVYRNDELT--------V-EELKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 25 ~~i~vi-d~----~~~~---~~~i~~~l~~~G~~~~v~~~~~~~--------~-~~l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.+|+|+ |+ .|.| .+.+.++..+.+.++.+++.+... . +.+ .++|||||+||++++...+ .
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~--~~~dgiil~GG~~~~~~~~-~ 85 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKAL--LGCDGIFVPGGFGNRGVDG-K 85 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHH--HTCSEEEECCCCTTTTHHH-H
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHH--hhCCEEEecCCCCCcCchh-H
Confidence 688888 55 3333 334445555567778777654211 1 123 2799999999988754433 4
Q ss_pred HHHHHHh-CCCCCEEEEechHHHHHHHhCCeee
Q 032797 88 LQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 88 ~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
.++++++ +.++|+||||+|||+|+.++||+|.
T Consensus 86 ~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~ 118 (273)
T 2w7t_A 86 CAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV 118 (273)
T ss_dssp HHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCcEEEECcCHHHHHHHHhCccc
Confidence 5667764 6789999999999999999999984
No 29
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.57 E-value=8.3e-16 Score=111.86 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=64.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCC-cCCc---hHHHHHHHHh-CCC-
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA-PQDS---GISLQTVLEL-GPT- 97 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~-~~d~---~~~~~~i~~~-~~~- 97 (133)
.++|.|+... +...++.++|++.|+++++++.. +++. ++|+|||+||+.. +.+. ..+.++++++ +++
T Consensus 2 ~p~Igi~~~~-~~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~ 74 (191)
T 2ywd_A 2 RGVVGVLALQ-GDFREHKEALKRLGIEAKEVRKK----EHLE--GLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGS 74 (191)
T ss_dssp -CCEEEECSS-SCHHHHHHHHHTTTCCCEEECSG----GGGT--TCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTC
T ss_pred CcEEEEEecC-CchHHHHHHHHHCCCEEEEeCCh----hhhc--cCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCC
Confidence 4678888764 34457889999999999888653 2443 6999999999532 1111 1245677775 678
Q ss_pred CCEEEEechHHHHHHHhCC
Q 032797 98 VPLFGVCMGLQCIGEAFGD 116 (133)
Q Consensus 98 ~PvLGIClG~QlLa~a~GG 116 (133)
+|+||||+|||+|+.++||
T Consensus 75 ~PilGiC~G~Q~l~~~~gg 93 (191)
T 2ywd_A 75 LALFGTCAGAIWLAKEIVG 93 (191)
T ss_dssp CEEEEETHHHHHHEEEETT
T ss_pred CeEEEECHHHHHHHHHhCC
Confidence 9999999999999999998
No 30
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.57 E-value=1.7e-15 Score=113.48 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=67.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhC---CCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC----c--hHHHHHHHHh
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGEL---GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----S--GISLQTVLEL 94 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~---G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d----~--~~~~~~i~~~ 94 (133)
.++|.|+++.+.+. ...++|+++ |+++.+++. .+++. ++|+|||+||+.+..+ . ..+.++|+++
T Consensus 3 ~~~I~Il~~~~~~~-~~~~~l~~~~~~G~~~~~~~~----~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~ 75 (227)
T 2abw_A 3 EITIGVLSLQGDFE-PHINHFIKLQIPSLNIIQVRN----VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHF 75 (227)
T ss_dssp CEEEEEECTTSCCH-HHHHHHHTTCCTTEEEEEECS----HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCcH-HHHHHHHHhccCCeEEEEEcC----ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHH
Confidence 47899998775554 567889888 988877653 34554 6999999999753321 1 2245677774
Q ss_pred -CC-CCCEEEEechHHHHHHHhCCeeee
Q 032797 95 -GP-TVPLFGVCMGLQCIGEAFGDCAFS 120 (133)
Q Consensus 95 -~~-~~PvLGIClG~QlLa~a~GG~v~~ 120 (133)
+. ++|+||||+|||+|+.++||++..
T Consensus 76 ~~~~g~PilGIC~G~QlL~~~~gg~~~~ 103 (227)
T 2abw_A 76 IHVLKKPIWGTCAGCILLSKNVENIKLY 103 (227)
T ss_dssp HHTSCCCEEEETHHHHHTEEEEECCCSC
T ss_pred HHhcCCEEEEECHHHHHHHHHhcCCccc
Confidence 67 899999999999999999998633
No 31
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.54 E-value=5.8e-16 Score=129.79 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=56.9
Q ss_pred HHHHHHHhCC----CeEEEEeCCCCCHHHHc------cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797 39 NLCQYMGELG----YHFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 39 ~i~~~l~~~G----~~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
++.++|+..| .++.+.+.+ .+++. ..++|||||+|||+++...+ ..++++++ +.++|+||||+||
T Consensus 307 Si~~aL~~~G~~~~~~V~i~~~d---~e~i~~~~~~~l~~~DGIilsGGpg~~~~~g-~~~~i~~a~~~~~PiLGIClG~ 382 (545)
T 1s1m_A 307 SVIEALKHGGLKNRVSVNIKLID---SQDVETRGVEILKGLDAILVPGGFGYRGVEG-MITTARFARENNIPYLGICLGM 382 (545)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEE---HHHHHHHCTTTTTTCSEEEECCCCSSTTHHH-HHHHHHHHHHTTCCEEEETHHH
T ss_pred HHHHHHHHhCcccCCeEEEccCC---HHHhhhhhhhhhhcCCEEEECCCCCCccchh-hHHHHHHHHHCCCcEEEECChH
Confidence 4555565544 456666654 22221 23799999999999886533 44667764 6789999999999
Q ss_pred HHHHHHhCCeeeec
Q 032797 108 QCIGEAFGDCAFSA 121 (133)
Q Consensus 108 QlLa~a~GG~v~~~ 121 (133)
|+|+.++||++.+.
T Consensus 383 Qll~va~Gg~v~~l 396 (545)
T 1s1m_A 383 QVALIDYARHVANM 396 (545)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHhCCceecC
Confidence 99999999998754
No 32
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.51 E-value=5.7e-15 Score=124.07 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=69.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch------HHHHHHHHh-CCC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-GPT 97 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~------~~~~~i~~~-~~~ 97 (133)
++|+|||+++++..++.++|++.|+++.+++..+ .+.+ .++|+|||+|| +++.... .+.++|+++ +.+
T Consensus 5 ~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~--~~~l--~~~DglILpGg-G~~~~~~~~l~~~~~~~~i~~~~~~g 79 (555)
T 1jvn_A 5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPK--DFNI--SGTSRLILPGV-GNYGHFVDNLFNRGFEKPIREYIESG 79 (555)
T ss_dssp CEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGG--GCCS--TTCSCEEEEEC-SCHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCcc--cccc--ccCCEEEECCC-CchHhHhhhhhhccHHHHHHHHHHcC
Confidence 5899999877888899999999999999887431 1113 37999999663 4433211 135667764 678
Q ss_pred CCEEEEechHHHHHHHh------------CCeeeec
Q 032797 98 VPLFGVCMGLQCIGEAF------------GDCAFSA 121 (133)
Q Consensus 98 ~PvLGIClG~QlLa~a~------------GG~v~~~ 121 (133)
+|+||||+|||+|+.++ ||++.+.
T Consensus 80 ~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~ 115 (555)
T 1jvn_A 80 KPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRF 115 (555)
T ss_dssp CCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEEC
T ss_pred CcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEEC
Confidence 99999999999999998 7888864
No 33
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.49 E-value=7.7e-15 Score=122.24 Aligned_cols=96 Identities=20% Similarity=0.426 Sum_probs=66.6
Q ss_pred cCCCCCeEEEEECC----CCchHHHHHHH----HhCCCeEEEEeCCCCCH--------HHHccCCCCEEEECCCCCCcCC
Q 032797 20 SKNNKNPIIVIDNY----DSFTYNLCQYM----GELGYHFEVYRNDELTV--------EELKRKNPRGVLISPGPGAPQD 83 (133)
Q Consensus 20 ~~~~~~~i~vid~~----~~~~~~i~~~l----~~~G~~~~v~~~~~~~~--------~~l~~~~~DgvIl~GG~~~~~d 83 (133)
++....+|+++.-| |+|. ++.++| .+.+.++.+.+.+..+. +++ .++||||++||++++..
T Consensus 289 ~~~~~v~IalVGKY~~l~DaY~-Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L--~~~DgIIlpGG~G~~~~ 365 (535)
T 3nva_A 289 NSKKTINIALVGKYTKLKDSYI-SIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEIL--GNVNGIIVLPGFGSRGA 365 (535)
T ss_dssp TCCCEEEEEEEESCTTSGGGGH-HHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTT--TSCSEEEECCCCSSTTH
T ss_pred CCCCeeEEEEEecCcCCchhHH-HHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhc--cCCCEEEECCCCCCccH
Confidence 45566889999544 3332 344444 44677777765432111 222 37999999999987643
Q ss_pred chHHHHHHHHh-CCCCCEEEEechHHHHHHHhCCeee
Q 032797 84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 84 ~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
.+ ..++++++ ++++|+||||+|||+|+.++||++.
T Consensus 366 ~g-~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~ 401 (535)
T 3nva_A 366 EG-KIKAIKYAREHNIPFLGICFGFQLSIVEFARDVL 401 (535)
T ss_dssp HH-HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTT
T ss_pred HH-HHHHHHHHHHcCCcEEEECcchhHHHHHhhcccc
Confidence 33 45677764 6789999999999999999999984
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.48 E-value=9.5e-14 Score=109.02 Aligned_cols=113 Identities=11% Similarity=0.142 Sum_probs=70.4
Q ss_pred ccccCC-CCCeEEEEECCCCc---hHHHHHHHHhCCCeEE--EEeCCC-C--------------CHHHHccCCCCEEEEC
Q 032797 17 DKKSKN-NKNPIIVIDNYDSF---TYNLCQYMGELGYHFE--VYRNDE-L--------------TVEELKRKNPRGVLIS 75 (133)
Q Consensus 17 ~~~~~~-~~~~i~vid~~~~~---~~~i~~~l~~~G~~~~--v~~~~~-~--------------~~~~l~~~~~DgvIl~ 75 (133)
++.+|. .++||+|++.-... ...+.+.|.....+++ .+.... . +.+++...+|||+||+
T Consensus 27 ~a~~q~irplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIIT 106 (301)
T 2vdj_A 27 RAETQDIRALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIIT 106 (301)
T ss_dssp CCCCTTSCCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEEC
T ss_pred hhcccCCCCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEEC
Confidence 445553 34799999874332 2346666665554444 343321 1 2444444689999999
Q ss_pred CCCCCcCCch------HHHHHHHHh-CCCCCEEEEechHHHHHHHhCC-eeeeccCCcceee
Q 032797 76 PGPGAPQDSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGD-CAFSAWCHAWKKF 129 (133)
Q Consensus 76 GG~~~~~d~~------~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG-~v~~~~~~~~g~~ 129 (133)
|||.+..+.+ .+.++++.. ++++|+||||+|+|+++.++|| +....++.+||..
T Consensus 107 Gap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~ 168 (301)
T 2vdj_A 107 GAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVF 168 (301)
T ss_dssp CCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEE
T ss_pred CCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCCCCEEEEE
Confidence 9997654332 234555554 6789999999999996665555 4455566666654
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.46 E-value=1.2e-13 Score=108.93 Aligned_cols=114 Identities=10% Similarity=0.026 Sum_probs=68.5
Q ss_pred ccccC-CCCCeEEEEECCCCc---hHHHHHHHHhCCCeEE--EEeCCC-C--------------CHHHHccCCCCEEEEC
Q 032797 17 DKKSK-NNKNPIIVIDNYDSF---TYNLCQYMGELGYHFE--VYRNDE-L--------------TVEELKRKNPRGVLIS 75 (133)
Q Consensus 17 ~~~~~-~~~~~i~vid~~~~~---~~~i~~~l~~~G~~~~--v~~~~~-~--------------~~~~l~~~~~DgvIl~ 75 (133)
++.+| ..++||+|++.-... ...+.+.|.....+++ .+.... . +.+++...+|||+||+
T Consensus 39 ~a~~qdirplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIIT 118 (312)
T 2h2w_A 39 RAIHQDIRPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIIT 118 (312)
T ss_dssp ------CCCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEEC
T ss_pred hhccCCCCCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEEC
Confidence 44555 344799999874332 3346667766554444 443321 1 2333333579999999
Q ss_pred CCCCCcCCch------HHHHHHHHh-CCCCCEEEEechHHHHHHHhCC-eeeeccCCcceeee
Q 032797 76 PGPGAPQDSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGD-CAFSAWCHAWKKFS 130 (133)
Q Consensus 76 GG~~~~~d~~------~~~~~i~~~-~~~~PvLGIClG~QlLa~a~GG-~v~~~~~~~~g~~~ 130 (133)
|||.+..+.+ ++.++++.. ++++|+||||+|+|+++.++|| .....++.+||...
T Consensus 119 GsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~ 181 (312)
T 2h2w_A 119 GAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVYK 181 (312)
T ss_dssp CCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEE
T ss_pred CCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEEE
Confidence 9997654332 234555554 6789999999999997666666 44455566666543
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.02 E-value=1.4e-10 Score=105.12 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=64.2
Q ss_pred CCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCCCC--CcCCch-----------
Q 032797 22 NNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPG--APQDSG----------- 85 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG~~--~~~d~~----------- 85 (133)
...+||+||+++.++. +++.++|+.+|+++++++..+. ..+++ .++|+||++||.. +.-+.+
T Consensus 1045 ~~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l--~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~ 1122 (1303)
T 3ugj_A 1045 GARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGL--GNFHALVACGGFSYGDVLGAGEGWAKSILFNH 1122 (1303)
T ss_dssp TCCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCG--GGCSEEEECCSCGGGGTTSTTHHHHHHHHTSH
T ss_pred CCCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccH--hhCCEEEECCCCcchhhhccchhHHHHHHhch
Confidence 3568999999977775 7889999999999988763100 11223 2799999999953 211111
Q ss_pred HHHHHHHH-h-CCCCCEEEEechHHHHHHH
Q 032797 86 ISLQTVLE-L-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 86 ~~~~~i~~-~-~~~~PvLGIClG~QlLa~a 113 (133)
.+.+.+++ + ++++|+||||+|||+|+++
T Consensus 1123 ~l~~~l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1123 RVRDEFETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp HHHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred hHHHHHHHHHHhCCCcEEEECHHHHHHHHh
Confidence 12345665 3 6799999999999999986
No 37
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=99.00 E-value=1.5e-09 Score=79.28 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=66.6
Q ss_pred ccCCCCCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCCC----------------HHHHccCCCCEEEECCCCC
Q 032797 19 KSKNNKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPG 79 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~~~~~~----------------~~~l~~~~~DgvIl~GG~~ 79 (133)
++..+.++|+|+-+.+... ..+.+.|++.|+++.++..+... .++....+||+||++||.+
T Consensus 18 ~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~ 97 (193)
T 1oi4_A 18 KKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS 97 (193)
T ss_dssp TTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH
T ss_pred hhhccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcC
Confidence 4445567898886532222 24678899999999988654211 1122223699999999954
Q ss_pred CcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH--hCC
Q 032797 80 APQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA--FGD 116 (133)
Q Consensus 80 ~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a--~GG 116 (133)
+. +...+.++|+++ ++++|+.|||.|.|+|+.+ +.|
T Consensus 98 -~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~G 139 (193)
T 1oi4_A 98 -PDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRG 139 (193)
T ss_dssp -HHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTT
T ss_pred -HHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCC
Confidence 22 234567888885 7899999999999999997 444
No 38
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=98.95 E-value=1.2e-09 Score=79.44 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=56.5
Q ss_pred HHHHHHHhCCCeEEEEeCCC--------------CCHHHHccCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEE
Q 032797 39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF 101 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvL 101 (133)
...+.|++.|++++++.... .+.+++...+||+|+++||++.. .+.....++++++ ++++|+.
T Consensus 26 ~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~ia 105 (177)
T 4hcj_A 26 ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVA 105 (177)
T ss_dssp HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEE
Confidence 46778999999998875431 12344444579999999997632 2345567888885 7899999
Q ss_pred EEechHHHHHHH
Q 032797 102 GVCMGLQCIGEA 113 (133)
Q Consensus 102 GIClG~QlLa~a 113 (133)
+||.|.++|+.+
T Consensus 106 aIC~g~~~La~a 117 (177)
T 4hcj_A 106 GIGSGVVIMANA 117 (177)
T ss_dssp EETTHHHHHHHT
T ss_pred EecccHHHHHHC
Confidence 999999999885
No 39
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.93 E-value=7.8e-10 Score=82.28 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=62.5
Q ss_pred CCCCeEEEEECCCC------chHHHHHHHHhCCCeEEEEeCCCCCHH----HHccCCCCEEEECCCCCCcCCch------
Q 032797 22 NNKNPIIVIDNYDS------FTYNLCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAPQDSG------ 85 (133)
Q Consensus 22 ~~~~~i~vid~~~~------~~~~i~~~l~~~G~~~~v~~~~~~~~~----~l~~~~~DgvIl~GG~~~~~d~~------ 85 (133)
..+.+|++|++..+ |..++.++|++.|+++++++....+.+ .+. ++|+|+++|| +.....
T Consensus 25 ~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG--~~~~l~~~L~~~ 100 (206)
T 3l4e_A 25 LQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR--KNDFIYVTGG--NTFFLLQELKRT 100 (206)
T ss_dssp CTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH--HSSEEEECCS--CHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH--hCCEEEECCC--CHHHHHHHHHHC
Confidence 34689999975433 667788999999999887753322332 233 6999999885 333221
Q ss_pred HHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 86 ~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.+.+.|++. ++++|++|||.|+|+++..
T Consensus 101 gl~~~l~~~~~~G~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 101 GADKLILEEIAAGKLYIGESAGAVITSPN 129 (206)
T ss_dssp THHHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred ChHHHHHHHHHcCCeEEEECHHHHHhccc
Confidence 135667764 6789999999999999863
No 40
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.92 E-value=4.1e-10 Score=84.80 Aligned_cols=88 Identities=9% Similarity=0.112 Sum_probs=62.6
Q ss_pred CCCeEEEEECCC------CchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchH------HHHH
Q 032797 23 NKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQT 90 (133)
Q Consensus 23 ~~~~i~vid~~~------~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~------~~~~ 90 (133)
...+|++|++.. +|..++.++|++.|+++..++..+...+++. ++|+|+++|| +...... +.+.
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~--~ad~I~lpGG--~~~~~~~~l~~~gl~~~ 105 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGG--NTFQLLKESRERGLLAP 105 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH--HCSEEEECCS--CHHHHHHHHHHTTCHHH
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh--cCCEEEECCC--cHHHHHHHHHHCChHHH
Confidence 457999999864 5566788899999998776643211225564 6899999886 3332211 3466
Q ss_pred HHH-hCCCCCEEEEechHHHHHHHh
Q 032797 91 VLE-LGPTVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 91 i~~-~~~~~PvLGIClG~QlLa~a~ 114 (133)
|++ +++++|++|+|.|+|+|+...
T Consensus 106 l~~~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 106 MADRVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp HHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred HHHHHHcCCEEEEECHHHHhhcccc
Confidence 776 467899999999999998854
No 41
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=98.78 E-value=2.2e-08 Score=71.05 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=64.5
Q ss_pred CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc--CC
Q 032797 24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QD 83 (133)
Q Consensus 24 ~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~--~d 83 (133)
++||+++-+. ++. ....+.|++.|+++.++..+.. +.++....+||.|+++||++.. ..
T Consensus 2 ~~ki~il~~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 80 (168)
T 3l18_A 2 SMKVLFLSAD-GFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRL 80 (168)
T ss_dssp CCEEEEECCT-TBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTT
T ss_pred CcEEEEEeCC-CccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhcc
Confidence 5688887543 332 2366788999999988765320 1233332369999999997421 23
Q ss_pred chHHHHHHHHh-CCCCCEEEEechHHHHHHH--hCCe
Q 032797 84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA--FGDC 117 (133)
Q Consensus 84 ~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a--~GG~ 117 (133)
.....++++++ ++++|+.+||.|.++|+.+ +.|+
T Consensus 81 ~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~ 117 (168)
T 3l18_A 81 NEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGR 117 (168)
T ss_dssp CHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTC
T ss_pred CHHHHHHHHHHHHCCCEEEEECHhHHHHHHCCccCCC
Confidence 44567888885 7899999999999999986 5553
No 42
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=98.75 E-value=2.5e-08 Score=74.71 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=64.5
Q ss_pred CeEEEEECC----CCch-H---HHHHHHHhCCCeEEEEeCCCC--------------------------------CHHHH
Q 032797 25 NPIIVIDNY----DSFT-Y---NLCQYMGELGYHFEVYRNDEL--------------------------------TVEEL 64 (133)
Q Consensus 25 ~~i~vid~~----~~~~-~---~i~~~l~~~G~~~~v~~~~~~--------------------------------~~~~l 64 (133)
++|+|+-+. +++. . ...+.|++.|++++++..+.. +.+++
T Consensus 7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~ 86 (232)
T 1vhq_A 7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA 86 (232)
T ss_dssp CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHc
Confidence 478888541 3442 2 246788999999998865321 01122
Q ss_pred ccCCCCEEEECCCCCCc---CC----------chHHHHHHHHh-CCCCCEEEEechHHHHHHHhC-Ce
Q 032797 65 KRKNPRGVLISPGPGAP---QD----------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG-DC 117 (133)
Q Consensus 65 ~~~~~DgvIl~GG~~~~---~d----------~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~G-G~ 117 (133)
...+||+||++||.+.. .+ ...+.++++++ ++++|+.+||.|.++|+.++. |+
T Consensus 87 ~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~~Gr 154 (232)
T 1vhq_A 87 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPL 154 (232)
T ss_dssp CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCC
T ss_pred CcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhcCCC
Confidence 12369999999997541 22 34567888885 789999999999999999987 74
No 43
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=98.63 E-value=9.5e-08 Score=72.55 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=62.7
Q ss_pred CeEEEEEC----CCCchH----HHHHHHHhCCCeEEEEeCCCC--------------------------------CHHHH
Q 032797 25 NPIIVIDN----YDSFTY----NLCQYMGELGYHFEVYRNDEL--------------------------------TVEEL 64 (133)
Q Consensus 25 ~~i~vid~----~~~~~~----~i~~~l~~~G~~~~v~~~~~~--------------------------------~~~~l 64 (133)
+||+++-. ++++.. ...+.|++.|++++++..+.. +++++
T Consensus 24 kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv 103 (242)
T 3l3b_A 24 LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQI 103 (242)
T ss_dssp CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGC
T ss_pred CEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHC
Confidence 58888853 345532 256788999999998765321 01122
Q ss_pred ccCCCCEEEECCCCCCc--------------CCchHHHHHHHHh-CCCCCEEEEechHHHHHHHh
Q 032797 65 KRKNPRGVLISPGPGAP--------------QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 65 ~~~~~DgvIl~GG~~~~--------------~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~ 114 (133)
...+||+|||+||.+.. .....+.++++++ ++++|+.+||.|.++|+.+-
T Consensus 104 ~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 104 RVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp CGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred CcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 22369999999997531 1234567888885 78999999999999999986
No 44
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=98.63 E-value=1e-07 Score=69.41 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC---------------CHHHH-ccCCCCEEEECCCCCCcC-
Q 032797 24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL---------------TVEEL-KRKNPRGVLISPGPGAPQ- 82 (133)
Q Consensus 24 ~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~---------------~~~~l-~~~~~DgvIl~GG~~~~~- 82 (133)
.++|+|+-+ +++. ....+.|++.|+++.++..+.. +.++. ...+||.||++||.+.+.
T Consensus 3 ~~~v~ill~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~ 81 (197)
T 2rk3_A 3 SKRALVILA-KGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN 81 (197)
T ss_dssp CCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred CCEEEEEEC-CCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence 467887765 3332 2366789999999988864321 12444 334799999999964332
Q ss_pred --CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 83 --d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+...+.++++++ ++++|+.+||.|.++|+.+
T Consensus 82 l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 82 LSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 234467888885 7899999999999999986
No 45
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=98.62 E-value=5.5e-08 Score=71.48 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=62.6
Q ss_pred CCeEEEEECCCCchH---HHHHHHHhCCCeEEEEeCCCC-----------------CHHHHccCCCCEEEECCCCCCcC-
Q 032797 24 KNPIIVIDNYDSFTY---NLCQYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQ- 82 (133)
Q Consensus 24 ~~~i~vid~~~~~~~---~i~~~l~~~G~~~~v~~~~~~-----------------~~~~l~~~~~DgvIl~GG~~~~~- 82 (133)
.++|+|+-+.+.... ...+.|++.|++++++..+.. +.++....+||.||++||.+.+.
T Consensus 2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~ 81 (205)
T 2ab0_A 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC 81 (205)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence 357887755322222 356789999999988865321 13344334799999999965433
Q ss_pred --CchHHHHHHHHh-CCCCCEEEEechH-HHHHHH
Q 032797 83 --DSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA 113 (133)
Q Consensus 83 --d~~~~~~~i~~~-~~~~PvLGIClG~-QlLa~a 113 (133)
+...+.++++++ ++++|+.+||.|. ++|+.+
T Consensus 82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 234467888885 7899999999999 999875
No 46
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=98.61 E-value=1.6e-07 Score=67.82 Aligned_cols=90 Identities=17% Similarity=0.254 Sum_probs=61.7
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC-------------------CHHHHccCCCCEEEECCCCC
Q 032797 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPG 79 (133)
Q Consensus 23 ~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~-------------------~~~~l~~~~~DgvIl~GG~~ 79 (133)
.+++|+|+-+ +++. ....+.|++.|++++++..+.. +.++....+||.||++||.+
T Consensus 8 ~~~~v~il~~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~ 86 (190)
T 2vrn_A 8 TGKKIAILAA-DGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV 86 (190)
T ss_dssp TTCEEEEECC-TTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred CCCEEEEEeC-CCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence 3468888854 3443 2356788999999987754321 11222223799999999974
Q ss_pred Cc---CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 80 AP---QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 80 ~~---~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
++ .....+.++++++ ++++|+.+||.|.++|+.+
T Consensus 87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 33 2345577889885 7899999999999999986
No 47
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=98.59 E-value=1.3e-07 Score=68.48 Aligned_cols=90 Identities=10% Similarity=0.103 Sum_probs=62.7
Q ss_pred CCCeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCC-C--------------CHHHHccCCCCEEEECCCCCCcC-
Q 032797 23 NKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDE-L--------------TVEELKRKNPRGVLISPGPGAPQ- 82 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~-~--------------~~~~l~~~~~DgvIl~GG~~~~~- 82 (133)
+.+||+++-+ ++|.. ...+.|++.|++++++..+. . +.++....+||.||++||...+.
T Consensus 4 m~kkv~ill~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~ 82 (190)
T 4e08_A 4 MSKSALVILA-PGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNA 82 (190)
T ss_dssp CCCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHH
T ss_pred CCcEEEEEEC-CCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHH
Confidence 3457887754 34432 35678999999999886542 1 12333334799999999843221
Q ss_pred --CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 83 --d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+...+.++++++ ++++|+.+||.|.++|+.+
T Consensus 83 ~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 83 MGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 234467888885 7899999999999999986
No 48
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=98.49 E-value=2.6e-07 Score=66.77 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=60.0
Q ss_pred CeEEEEECC---CCchHHHHHHHHh-CCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc-CCch
Q 032797 25 NPIIVIDNY---DSFTYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSG 85 (133)
Q Consensus 25 ~~i~vid~~---~~~~~~i~~~l~~-~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~-~d~~ 85 (133)
++|+++-+. +.....+.+.|++ .|+++.++..+.. +.++....+||.||++||.+.. ....
T Consensus 2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 81 (188)
T 2fex_A 2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAA 81 (188)
T ss_dssp CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCC
T ss_pred cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccH
Confidence 467776321 1122346778888 8999988765321 1222322379999999997521 2334
Q ss_pred HHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 86 ~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.+.++++++ ++++|+.+||.|.++|+.+
T Consensus 82 ~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 82 DLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 467888885 7899999999999999986
No 49
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=98.44 E-value=1.9e-07 Score=68.82 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=62.4
Q ss_pred cCCCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-C--------------CHHHHccCCCCEEEECCCCCC
Q 032797 20 SKNNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-L--------------TVEELKRKNPRGVLISPGPGA 80 (133)
Q Consensus 20 ~~~~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~-~--------------~~~~l~~~~~DgvIl~GG~~~ 80 (133)
...+.+||+++-+. +|. ..+.+.|+..|++++++..+. . +.++....+||.|||+||.+.
T Consensus 5 ~~~m~~~v~ill~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~ 83 (208)
T 3ot1_A 5 EQGMSKRILVPVAH-GSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG 83 (208)
T ss_dssp ----CCEEEEEECT-TCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHH
T ss_pred ccccCCeEEEEECC-CCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchH
Confidence 33455688888543 332 235678999999998886642 1 122332237999999999643
Q ss_pred cC---CchHHHHHHHHh-CCCCCEEEEechH-HHHHHH
Q 032797 81 PQ---DSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA 113 (133)
Q Consensus 81 ~~---d~~~~~~~i~~~-~~~~PvLGIClG~-QlLa~a 113 (133)
+. +...+.++++++ ++++|+.+||.|. .+|+.+
T Consensus 84 ~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 84 AQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred HHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 32 344567888885 7899999999999 899874
No 50
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.43 E-value=5.6e-07 Score=64.11 Aligned_cols=90 Identities=12% Similarity=0.143 Sum_probs=58.0
Q ss_pred CCeEEEEECCC--C-chHHHHHHHHhCCCeEEEEeCCC---------------CCHHHH--ccCCCCEEEECCC--CCCc
Q 032797 24 KNPIIVIDNYD--S-FTYNLCQYMGELGYHFEVYRNDE---------------LTVEEL--KRKNPRGVLISPG--PGAP 81 (133)
Q Consensus 24 ~~~i~vid~~~--~-~~~~i~~~l~~~G~~~~v~~~~~---------------~~~~~l--~~~~~DgvIl~GG--~~~~ 81 (133)
++||+++-+.. + -.....+.+.+.|++++++..+. .+.++. ...+||.||++|| ..++
T Consensus 2 ~~~v~ill~~~~~g~~~~~~~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~ 81 (175)
T 3cne_A 2 AKKVAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVF 81 (175)
T ss_dssp CCEEEEEECSSBCHHHHHHHHHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGG
T ss_pred CcEEEEEEecCcCCCccchhhheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccH
Confidence 46788886531 2 00122333337789988886541 112333 2247999999999 5233
Q ss_pred C------CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 82 Q------DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 82 ~------d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
. ....+.++++++ ++++|+.+||.|.++|+.+
T Consensus 82 ~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 82 QQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 2 123467888885 7899999999999999987
No 51
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=98.42 E-value=7.3e-07 Score=65.90 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=54.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC----CH-----------------------HHHccCCCCEEEECCCCCCc---CCchHHHH
Q 032797 40 LCQYMGELGYHFEVYRNDEL----TV-----------------------EELKRKNPRGVLISPGPGAP---QDSGISLQ 89 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~----~~-----------------------~~l~~~~~DgvIl~GG~~~~---~d~~~~~~ 89 (133)
..+.|++.|++++++..+.. +. +++...+||+||++||.+.. .....+.+
T Consensus 34 p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~ 113 (224)
T 1u9c_A 34 PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQY 113 (224)
T ss_dssp HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHH
Confidence 56788899999998865321 10 11112379999999997643 23455778
Q ss_pred HHHHh-CCCCCEEEEechHHHHHHH
Q 032797 90 TVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 90 ~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+++++ ++++||.+||.|.++|+.+
T Consensus 114 ~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 114 VLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHCCCEEEEEChHHHHHHHc
Confidence 89885 7899999999999999976
No 52
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=98.41 E-value=7.4e-07 Score=65.83 Aligned_cols=89 Identities=6% Similarity=-0.030 Sum_probs=59.9
Q ss_pred CeEEEEEC--CC-CchHHHHHHHH--------hCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCC
Q 032797 25 NPIIVIDN--YD-SFTYNLCQYMG--------ELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPG 79 (133)
Q Consensus 25 ~~i~vid~--~~-~~~~~i~~~l~--------~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~ 79 (133)
++|+++-+ .+ .....+.+.|+ +.++++.++..+.. +.++....+||.||++||.+
T Consensus 6 ~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~ 85 (212)
T 3efe_A 6 KKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTT 85 (212)
T ss_dssp CCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSC
T ss_pred cEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCc
Confidence 46776633 22 12335677787 66888888765321 12333334799999999976
Q ss_pred CcC-CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 80 APQ-DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 80 ~~~-d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
... ....+.++++++ ++++++.+||.|..+|+.+
T Consensus 86 ~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 86 WSEEIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp TTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred cccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 332 233467888885 7889999999999999986
No 53
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=98.41 E-value=9.9e-07 Score=65.14 Aligned_cols=87 Identities=11% Similarity=0.178 Sum_probs=59.8
Q ss_pred CeEEEEECCCCc----hHHHHHHHHhC-CCeEEEEeCCCC-------------CHHHHccCCCCEEEECCCCCCcCCchH
Q 032797 25 NPIIVIDNYDSF----TYNLCQYMGEL-GYHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 25 ~~i~vid~~~~~----~~~i~~~l~~~-G~~~~v~~~~~~-------------~~~~l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
++|+++-+ +++ ...+.+.|++. ++++.++..+.. +.++. ..++|.||++||.+.......
T Consensus 4 ~kV~ill~-~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~~~~~ 81 (206)
T 3f5d_A 4 KKALFLIL-DQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSNDNKK 81 (206)
T ss_dssp EEEEEECC-SSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCCCCHH
T ss_pred cEEEEEEc-CCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhhcCHH
Confidence 46776632 222 23467778877 888887764321 11222 237999999999753334445
Q ss_pred HHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 87 SLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 87 ~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+.++++++ ++++|+.+||.|.++|+.+
T Consensus 82 l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 82 LLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp HHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 67889885 7899999999999999986
No 54
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=98.39 E-value=1.8e-06 Score=73.97 Aligned_cols=92 Identities=12% Similarity=0.032 Sum_probs=65.6
Q ss_pred CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-----CCHHHHccCCCCEEEECCCCCC-------cC---
Q 032797 22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----LTVEELKRKNPRGVLISPGPGA-------PQ--- 82 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~-----~~~~~l~~~~~DgvIl~GG~~~-------~~--- 82 (133)
..+.||+||-..+.+. ..+.++|++.|+.++++.... .+.++.....||+|||+||..+ +.
T Consensus 535 l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr 614 (688)
T 3ej6_A 535 IATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLF 614 (688)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTS
T ss_pred ccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhc
Confidence 5567898884322243 346789999999999986531 1233333457999999999654 12
Q ss_pred CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 83 d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.....+++++++ +.+|||.+||.|-|+|..+
T Consensus 615 ~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 615 PAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp CTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred cCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 234567889885 8899999999999999876
No 55
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=98.29 E-value=8.1e-07 Score=76.73 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=63.5
Q ss_pred CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc--
Q 032797 22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-- 81 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~-- 81 (133)
..+.+|+|+-. ++|. ..+.+.|++.|++++++..... +.++.....||+|||+|| +..
T Consensus 598 i~grKVaILla-DGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~L 675 (753)
T 3ttv_A 598 VKGRVVAILLN-DEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADI 675 (753)
T ss_dssp CTTCEEEEECC-TTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGT
T ss_pred CCCCEEEEEec-CCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHh
Confidence 45568888743 2442 2467889999999998754321 122233336999999999 422
Q ss_pred CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 82 ~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
......+++|+++ .+++||.+||.|.++|+.|
T Consensus 676 r~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 676 ADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp TTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred hhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 2445678899885 7899999999999999886
No 56
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=98.28 E-value=1.1e-06 Score=66.76 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=38.0
Q ss_pred CCCCEEEECCCCCCcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 67 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.+||+|+++||.+... ....+.++++++ ++++||.+||.|.++|+.+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 3699999999986422 334567888885 7899999999999999987
No 57
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.27 E-value=2.6e-06 Score=68.06 Aligned_cols=90 Identities=17% Similarity=0.264 Sum_probs=62.8
Q ss_pred CCCeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCCC------------------------------CHHHHccCC
Q 032797 23 NKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDEL------------------------------TVEELKRKN 68 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~~------------------------------~~~~l~~~~ 68 (133)
+.+||+|+-. ++|.. ...+.|++.|++++++..+.. +.++....+
T Consensus 11 ~~~kv~ill~-dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 89 (396)
T 3uk7_A 11 NSRTVLILCG-DYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSK 89 (396)
T ss_dssp CCCEEEEECC-TTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred cCCeEEEEeC-CCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCccc
Confidence 3467887754 34432 356789999999988855311 122222246
Q ss_pred CCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 69 PRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 69 ~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
||.|+++||.+.. .+.....++++++ ++++|+.+||.|.++|+.+
T Consensus 90 ~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 90 YDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp CSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred CCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 9999999996521 2344567888885 7899999999999999986
No 58
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.27 E-value=2.5e-06 Score=68.17 Aligned_cols=91 Identities=18% Similarity=0.271 Sum_probs=63.5
Q ss_pred CCCCeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCC------------------------------CCHHHHccC
Q 032797 22 NNKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDE------------------------------LTVEELKRK 67 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~------------------------------~~~~~l~~~ 67 (133)
..++||+|+-. +++.. ...+.|++.|++++++..+. .+.++....
T Consensus 203 ~~~~ki~ill~-dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 281 (396)
T 3uk7_A 203 GANKRILFLCG-DYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSS 281 (396)
T ss_dssp CCCCEEEEECC-TTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGG
T ss_pred hccceEEEEec-CCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcc
Confidence 44568887754 34432 36678899999998875431 112333223
Q ss_pred CCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 68 NPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 68 ~~DgvIl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+||.||++||.+.. .......++++++ ++++|+.+||.|.++|+.+
T Consensus 282 ~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 282 SYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp GCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred cCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 79999999997521 2345567888885 7899999999999999986
No 59
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=98.25 E-value=2.3e-06 Score=62.77 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=59.0
Q ss_pred CCCCeEEEEECCCCchH----HHHHHHHhCC------CeEEEEeCCCC-------------CHHHHccCCCCEEEECCCC
Q 032797 22 NNKNPIIVIDNYDSFTY----NLCQYMGELG------YHFEVYRNDEL-------------TVEELKRKNPRGVLISPGP 78 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~----~i~~~l~~~G------~~~~v~~~~~~-------------~~~~l~~~~~DgvIl~GG~ 78 (133)
.++++|+|+-+. ++.. ...+.|+..+ +++.++..+.. +.++....+||.|||+||.
T Consensus 3 ~~~~~v~ill~~-g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~ 81 (202)
T 3gra_A 3 LAPYRVDFILLE-HFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGL 81 (202)
T ss_dssp --CEEEEEEECT-TBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCT
T ss_pred CCcEEEEEEEeC-CCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCC
Confidence 345678877543 4422 2456666543 77777654311 1122212479999999997
Q ss_pred CCcCCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 79 GAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 79 ~~~~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+.......+.+++++. ++++++.+||-|..+|+.+
T Consensus 82 ~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 82 RTPLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp TCCSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred chhhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 6443225577888885 7889999999999999986
No 60
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.24 E-value=1.3e-06 Score=70.05 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=61.1
Q ss_pred CCCCeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCCCC----------------HHHHccCCCCEEEECCCCCCc
Q 032797 22 NNKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGAP 81 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~----------------~~~l~~~~~DgvIl~GG~~~~ 81 (133)
.+.++|+|+-+ ++|.. .+.+.|+..|+++.++..+... .+++...+||.|||+||.+..
T Consensus 8 ~~mkkV~ILl~-dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~ 86 (365)
T 3fse_A 8 SGKKKVAILIE-QAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPD 86 (365)
T ss_dssp ---CEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHH
T ss_pred CCceEEEEEEC-CCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchh
Confidence 34467887754 34432 3667899999999887653211 112222259999999997421
Q ss_pred --CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 82 --QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 82 --~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.....+.++++++ .+++||.+||.|..+|+.+
T Consensus 87 ~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 87 KMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp HHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 2344567888885 7899999999999999985
No 61
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=98.21 E-value=1.4e-06 Score=64.17 Aligned_cols=91 Identities=8% Similarity=0.099 Sum_probs=57.6
Q ss_pred CCCCCeEEEEECCCCc---hHHHHHHHHhC-------CCeEEEEeCCC--------------CCHHHHccCCCCEEEECC
Q 032797 21 KNNKNPIIVIDNYDSF---TYNLCQYMGEL-------GYHFEVYRNDE--------------LTVEELKRKNPRGVLISP 76 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~---~~~i~~~l~~~-------G~~~~v~~~~~--------------~~~~~l~~~~~DgvIl~G 76 (133)
+.+.++|+|+-+.+-. .....+.|+.+ ++++.++..+. .+.+++ .++|.||++|
T Consensus 5 ~~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~--~~~D~livpG 82 (209)
T 3er6_A 5 NKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSF--DFTNILIIGS 82 (209)
T ss_dssp --CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGC--SCCSEEEECC
T ss_pred CCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCcccc--CCCCEEEECC
Confidence 4455678777432211 12345666553 36777664431 112333 3799999999
Q ss_pred CCCCc----CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 77 GPGAP----QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 77 G~~~~----~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
|.+.. .+...+.++++++ ++++++.+||-|..+|+.+
T Consensus 83 g~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 83 IGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 86522 2345577889885 7899999999999999986
No 62
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=98.15 E-value=3.6e-06 Score=63.76 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=38.0
Q ss_pred CCCCEEEECCCCCCcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 67 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.+||+|+++||.+... +...+.++++++ ++++||.+||.|..+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 3699999999976422 334567888885 7899999999999999877
No 63
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=98.14 E-value=7.6e-06 Score=61.28 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=60.3
Q ss_pred CCeEEEEECCCCchH----HHHHHHHh-CCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc--C
Q 032797 24 KNPIIVIDNYDSFTY----NLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--Q 82 (133)
Q Consensus 24 ~~~i~vid~~~~~~~----~i~~~l~~-~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~--~ 82 (133)
.++|+++-+ ++|.. .+.+.|+. .++++.++..+.. +.++. .+||.|+++||++.. .
T Consensus 5 ~~~V~ill~-~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~g~~~~~ 81 (231)
T 3noq_A 5 AVQIGFLLF-PEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADC--PPLDVICIPGGTGVGALM 81 (231)
T ss_dssp CEEEEEECC-TTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTC--CCCSEEEECCSTTHHHHT
T ss_pred cEEEEEEEe-CCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHC--CcCCEEEECCCCChhhhc
Confidence 467877754 34432 35677887 6888887754310 11222 269999999997632 2
Q ss_pred CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 83 d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
....+.+++++. .+++++.+||.|..+|+.+
T Consensus 82 ~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 82 EDPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp TCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred cCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 445577899885 8899999999999999985
No 64
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=98.12 E-value=3.2e-06 Score=63.58 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=37.5
Q ss_pred CCCEEEECCCCCCcC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 68 NPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+||+||++||.+... ....+.++++++ ++++||.+||.|.++|+.+
T Consensus 98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 98 DYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 699999999976432 234567888885 7899999999999999886
No 65
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=98.08 E-value=9.4e-06 Score=62.89 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=53.8
Q ss_pred HHHHHHhCCCeEEEEeCCCC--C-----------------------------HHHH-----ccCCCCEEEECCCCCCcC-
Q 032797 40 LCQYMGELGYHFEVYRNDEL--T-----------------------------VEEL-----KRKNPRGVLISPGPGAPQ- 82 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~--~-----------------------------~~~l-----~~~~~DgvIl~GG~~~~~- 82 (133)
..+.|++.|++++++..+.. . .+++ ...+||+|||+||.+...
T Consensus 81 p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~ 160 (291)
T 1n57_A 81 PLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIG 160 (291)
T ss_dssp HHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSS
T ss_pred HHHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcchhhh
Confidence 56678899999998864321 0 1221 124799999999976442
Q ss_pred --CchHHHHHHHHh-CCCCCEEEEechHHHHHHHh
Q 032797 83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (133)
Q Consensus 83 --d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~ 114 (133)
+...+.++++++ +++++|.+||.|..+|+.+-
T Consensus 161 l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 161 LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred hhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 234567888885 78999999999999887763
No 66
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=98.07 E-value=1.4e-05 Score=60.82 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=61.1
Q ss_pred CCCeEEEEECCCCchH----HHHHHH-HhCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCC-CC--
Q 032797 23 NKNPIIVIDNYDSFTY----NLCQYM-GELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGP-GA-- 80 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~----~i~~~l-~~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~-~~-- 80 (133)
+.++|+|+-+ ++|.. ...+.| +..|+++.++..+.. +.++.+ ..||.|||+||. +.
T Consensus 22 m~~~I~ill~-~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~ 99 (253)
T 3ewn_A 22 GDEQIAMLVY-PGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLA 99 (253)
T ss_dssp CCCEEEEECC-TTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHH
T ss_pred CCeEEEEEeC-CCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhh
Confidence 4468888854 34432 356778 457899988755321 112222 257999999997 42
Q ss_pred cCCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 81 ~~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
......+.++|++. +++++|.+||-|..+|+.+
T Consensus 100 l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 100 AASDAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 22445678899885 8899999999999999986
No 67
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=98.05 E-value=6.8e-06 Score=70.53 Aligned_cols=92 Identities=11% Similarity=0.104 Sum_probs=64.7
Q ss_pred CCCCeEEEEEC-CCCch----HHHHHHHHhCCCeEEEEeCCCC-----CHHHHccCCCCEEEECCCCCC-----------
Q 032797 22 NNKNPIIVIDN-YDSFT----YNLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGA----------- 80 (133)
Q Consensus 22 ~~~~~i~vid~-~~~~~----~~i~~~l~~~G~~~~v~~~~~~-----~~~~l~~~~~DgvIl~GG~~~----------- 80 (133)
..++||+|+-. .+++. ..+.+.|++.|++++++..... +.++.....||+|||+||..+
T Consensus 527 l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~ 606 (688)
T 2iuf_A 527 LDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEP 606 (688)
T ss_dssp CTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCC
T ss_pred CCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccc
Confidence 44568888854 13443 2477889999999999865321 122223347999999999543
Q ss_pred -----cC---CchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 81 -----PQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 81 -----~~---d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
+. ..+...+++++. ..+|||.+||.|-++|..+
T Consensus 607 ~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 607 SAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp CTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred ccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 22 334567888884 7889999999999999875
No 68
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=97.98 E-value=1.4e-05 Score=69.02 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCcC--
Q 032797 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAPQ-- 82 (133)
Q Consensus 23 ~~~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~~-- 82 (133)
.+++|+|+-. +++. ..+.+.|+..|++++++..... +.++.....||+|||+||.+.+.
T Consensus 533 ~~rkVaILl~-dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l 611 (715)
T 1sy7_A 533 KSRRVAIIIA-DGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL 611 (715)
T ss_dssp TTCEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred CCCEEEEEEc-CCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhh
Confidence 3468888854 3332 2366788999999998865321 11222223699999999853322
Q ss_pred -CchHHHHHHHHh-CCCCCEEEEechHHHHHHHhC
Q 032797 83 -DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (133)
Q Consensus 83 -d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a~G 115 (133)
....+.++|+++ ++++||.+||.|..+|+.++|
T Consensus 612 ~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 612 SKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 344567888885 789999999999999999943
No 69
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=97.89 E-value=4.4e-06 Score=61.69 Aligned_cols=88 Identities=14% Similarity=0.232 Sum_probs=57.7
Q ss_pred CCCeEEEEECCCCch----HHHHHHHHhC--CCeEEEEeCCCC--------------CHHHHccCCCCEEEECCCCCCc-
Q 032797 23 NKNPIIVIDNYDSFT----YNLCQYMGEL--GYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP- 81 (133)
Q Consensus 23 ~~~~i~vid~~~~~~----~~i~~~l~~~--G~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG~~~~- 81 (133)
.+++|+|+-+. +|. ..+.+.|+.. ++++.++..+.. +.++. ..+|.||++||++..
T Consensus 3 ~~~~V~ill~~-g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~--~~~D~livpGG~~~~~ 79 (211)
T 3mgk_A 3 LSYRIDVLLFN-KFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDE--NIEKILFVPGGSGTRE 79 (211)
T ss_dssp -CEEEEEECCT-TCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCS--SSEEEEEECCSTHHHH
T ss_pred CceEEEEEEeC-CcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhC--CCCCEEEECCCcchhh
Confidence 34678777442 332 2356778876 477777644310 11111 248999999997532
Q ss_pred -CCchHHHHHHHHh-CCCCCEEEEechHHHHHHH
Q 032797 82 -QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 82 -~d~~~~~~~i~~~-~~~~PvLGIClG~QlLa~a 113 (133)
.....+.++++++ ++++++.+||-|..+|+.+
T Consensus 80 ~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 80 KVNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp HTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 2344567888885 7889999999999999985
No 70
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=97.76 E-value=4.1e-05 Score=55.74 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=53.2
Q ss_pred CCeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCC-----------------CCHHHHc-----cCCCCEEEECCC
Q 032797 24 KNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDE-----------------LTVEELK-----RKNPRGVLISPG 77 (133)
Q Consensus 24 ~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~~~-----------------~~~~~l~-----~~~~DgvIl~GG 77 (133)
.+||+|+-+ ++|.. ...+.|++.|++++++.... .+.+++. ..+||.||++||
T Consensus 4 M~kV~ill~-dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG 82 (194)
T 4gdh_A 4 MVKVCLFVA-DGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGG 82 (194)
T ss_dssp -CCEEEEEE-TTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCC
T ss_pred CCEEEEEEC-CCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCC
Confidence 357777743 24422 35678999999887653210 0111111 125899999999
Q ss_pred CCCcC---CchHHHHHHHHh-C-CCCCEEEEechHHHH
Q 032797 78 PGAPQ---DSGISLQTVLEL-G-PTVPLFGVCMGLQCI 110 (133)
Q Consensus 78 ~~~~~---d~~~~~~~i~~~-~-~~~PvLGIClG~QlL 110 (133)
...+. +.....++++++ + .++++..||.|..++
T Consensus 83 ~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 83 GLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTA 120 (194)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred chhHhHhhhCHHHHHHHHHhhhcCCceEEeecccccch
Confidence 54332 345567889885 4 579999999998544
No 71
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=97.59 E-value=7.7e-05 Score=56.13 Aligned_cols=91 Identities=20% Similarity=0.316 Sum_probs=56.6
Q ss_pred CCCCCeEEEEECCCCchH----HHHHHHHhCC--CeEEEEeCCCC--------------CHHHHccCCCCEEEECCC-CC
Q 032797 21 KNNKNPIIVIDNYDSFTY----NLCQYMGELG--YHFEVYRNDEL--------------TVEELKRKNPRGVLISPG-PG 79 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~----~i~~~l~~~G--~~~~v~~~~~~--------------~~~~l~~~~~DgvIl~GG-~~ 79 (133)
+...++|+|+-+ ++|.. .+.+.|+..+ +++.++. +.. +.++. .+||.|||+|| ++
T Consensus 17 ~~~~~kV~ill~-dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g 92 (236)
T 3bhn_A 17 FQGMYKVGIVLF-DDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRG 92 (236)
T ss_dssp ---CEEEEEECC-TTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTH
T ss_pred cCCCCEEEEEeC-CCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCcccccc--cCCCEEEEcCCccC
Confidence 344567887754 34422 3566777755 6777665 310 12222 37999999999 54
Q ss_pred Cc--CCchHHHHHHHHhCCCC-CEEEEechHHHHHHH--hCC
Q 032797 80 AP--QDSGISLQTVLELGPTV-PLFGVCMGLQCIGEA--FGD 116 (133)
Q Consensus 80 ~~--~d~~~~~~~i~~~~~~~-PvLGIClG~QlLa~a--~GG 116 (133)
.. .......+++ ...+++ ++.+||-|..+|+.+ +.|
T Consensus 93 ~~~l~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~AGLL~G 133 (236)
T 3bhn_A 93 IPAALQDENFMSAL-KLDPSRQLIGSICAGSFVLHELGLLKG 133 (236)
T ss_dssp HHHHHTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHTTTTTT
T ss_pred HhhhccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHcCCCCC
Confidence 32 1334566777 655566 999999999999987 444
No 72
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=95.73 E-value=0.054 Score=34.86 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=49.6
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCCE
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPL 100 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~~~~~Pv 100 (133)
..+++|+++|........+.+.|++.|+.+..........+.+....+|.+|+--. -+. +.-...+.+++.....|+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~i 82 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA--MPRMNGLKLLEHIRNRGDQTPV 82 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-------CHHHHHHHHHTTCCCCE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCE
Confidence 45679999987555566788889999998765432111112233457998888322 111 222345566665567899
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-+.-
T Consensus 83 i~~t~ 87 (130)
T 3eod_A 83 LVISA 87 (130)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88864
No 73
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=95.62 E-value=0.0028 Score=49.14 Aligned_cols=87 Identities=11% Similarity=0.174 Sum_probs=55.9
Q ss_pred CCeEEEEECCC----CchHHHHHHHHhCCC-eEEEEeCCCC----CH---HHHccCCCCEEEECCCCCCcC----CchHH
Q 032797 24 KNPIIVIDNYD----SFTYNLCQYMGELGY-HFEVYRNDEL----TV---EELKRKNPRGVLISPGPGAPQ----DSGIS 87 (133)
Q Consensus 24 ~~~i~vid~~~----~~~~~i~~~l~~~G~-~~~v~~~~~~----~~---~~l~~~~~DgvIl~GG~~~~~----d~~~~ 87 (133)
..+|++|-.-. .+...+.+.+++.|+ .+++++.... +. +.+ .+.|+|+++||...-. ....+
T Consensus 56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l--~~ad~I~v~GGnt~~l~~~l~~t~l 133 (291)
T 3en0_A 56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFV--EQCTGIFMTGGDQLRLCGLLADTPL 133 (291)
T ss_dssp GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHH--HHCSEEEECCSCHHHHHHHHTTCHH
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHH--hcCCEEEECCCCHHHHHHHHHhCCH
Confidence 57999995432 234456778888999 6776654211 11 122 2699999999842110 11224
Q ss_pred HHHHHH-hCCC-CCEEEEechHHHHHH
Q 032797 88 LQTVLE-LGPT-VPLFGVCMGLQCIGE 112 (133)
Q Consensus 88 ~~~i~~-~~~~-~PvLGIClG~QlLa~ 112 (133)
.+.|++ ++++ .|+.|.|-|+-+++.
T Consensus 134 ~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 134 MDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred HHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 567776 4667 999999999998865
No 74
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=95.53 E-value=0.044 Score=42.14 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=50.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG 102 (133)
.|+|+++-+.+.....+.++|++.|+++.+.... .+.+ ..+|.+|..||- +.++...+.+ .. +|++|
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~---~~~~--~~~DlvIvlGGD------GT~L~aa~~~~~~-~PilG 96 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQP---SEEL--ENFDFIVSVGGD------GTILRILQKLKRC-PPIFG 96 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSC---CGGG--GGSSEEEEEECH------HHHHHHHTTCSSC-CCEEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccc---cccc--CCCCEEEEECCC------HHHHHHHHHhCCC-CcEEE
Confidence 4789998765444667889999999988765432 1222 268999999983 4455555555 34 99999
Q ss_pred EechH
Q 032797 103 VCMGL 107 (133)
Q Consensus 103 IClG~ 107 (133)
|=.|.
T Consensus 97 IN~G~ 101 (278)
T 1z0s_A 97 INTGR 101 (278)
T ss_dssp EECSS
T ss_pred ECCCC
Confidence 99873
No 75
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=95.42 E-value=0.037 Score=36.16 Aligned_cols=85 Identities=9% Similarity=0.185 Sum_probs=50.6
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHH--hCCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLE--LGPT 97 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~--~~~~ 97 (133)
....++|+|+|........+.+.|++.|+++..........+.+....+|.||+--. -|...+ .+.+.+++ ...+
T Consensus 3 ~~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 3 LAPRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPDQDGVSLIRALRRDSRTRD 80 (140)
T ss_dssp --CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHTSGGGTT
T ss_pred CCCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCcccCC
Confidence 345679999987555566788889999998765432111122233457998888322 122222 34555665 3467
Q ss_pred CCEEEEechH
Q 032797 98 VPLFGVCMGL 107 (133)
Q Consensus 98 ~PvLGIClG~ 107 (133)
.|++-+.-..
T Consensus 81 ~~ii~~s~~~ 90 (140)
T 3grc_A 81 LAIVVVSANA 90 (140)
T ss_dssp CEEEEECTTH
T ss_pred CCEEEEecCC
Confidence 8999887554
No 76
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=95.15 E-value=0.083 Score=33.88 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=49.4
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccC-CCCEEEECCCCCCcC-Cch-HHHHHHHHhCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQ-DSG-ISLQTVLELGPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~-~~DgvIl~GG~~~~~-d~~-~~~~~i~~~~~~~ 98 (133)
..+++|+|+|........+.+.|+..|+++..........+.+... .+|.+|+--. .+. ..+ ...+.+++.....
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~--l~~~~~g~~~~~~l~~~~~~~ 80 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIR--FCQPPDGWQVARVAREIDPNM 80 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESC--CSSSSCHHHHHHHHHHHCTTC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeee--CCCCCCHHHHHHHHHhcCCCC
Confidence 3457899998765556678888888899876543211111223333 6998887322 121 122 3445566555678
Q ss_pred CEEEEech
Q 032797 99 PLFGVCMG 106 (133)
Q Consensus 99 PvLGIClG 106 (133)
|++-+.-.
T Consensus 81 ~ii~~s~~ 88 (132)
T 2rdm_A 81 PIVYISGH 88 (132)
T ss_dssp CEEEEESS
T ss_pred CEEEEeCC
Confidence 99888643
No 77
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=95.05 E-value=0.019 Score=37.58 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=48.4
Q ss_pred cccCCCCCeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHhC
Q 032797 18 KKSKNNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG 95 (133)
Q Consensus 18 ~~~~~~~~~i~vid~~~~~~~~i~~~l~~~G-~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~~ 95 (133)
.+.+...++|+|+|........+.+.|++.| +++..........+.+....+|.+|+--. -|... -.+.+.+++..
T Consensus 8 ~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~ 85 (135)
T 3snk_A 8 KVTPTKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLG--GGDLLGKPGIVEARALW 85 (135)
T ss_dssp -----CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEE--TTGGGGSTTHHHHHGGG
T ss_pred cccCCCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCC--CCCchHHHHHHHHHhhC
Confidence 3444556789999876556667888899888 87765432111111222347898887211 11111 12455666654
Q ss_pred CCCCEEEEec
Q 032797 96 PTVPLFGVCM 105 (133)
Q Consensus 96 ~~~PvLGICl 105 (133)
.+.|++-+.-
T Consensus 86 ~~~~ii~~s~ 95 (135)
T 3snk_A 86 ATVPLIAVSD 95 (135)
T ss_dssp TTCCEEEEES
T ss_pred CCCcEEEEeC
Confidence 5799998864
No 78
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=94.76 E-value=0.091 Score=35.17 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=48.6
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~ 98 (133)
..+++|+|+|........+.+.|++.|+.+..........+.+....+|.||+-=. -|...+ .+.+.+++. ...+
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~~ 82 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEMDGYALCRWLKGQPDLRTI 82 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTS
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCCCcCCC
Confidence 34679999987655666788889989988765532111112233457998888321 122222 345566654 2678
Q ss_pred CEEEEe
Q 032797 99 PLFGVC 104 (133)
Q Consensus 99 PvLGIC 104 (133)
|++-+.
T Consensus 83 pii~~s 88 (154)
T 3gt7_A 83 PVILLT 88 (154)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999887
No 79
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=94.74 E-value=0.042 Score=35.97 Aligned_cols=81 Identities=11% Similarity=0.089 Sum_probs=48.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
+.++|+|+|........+.+.|++.|+++..........+.+....+|.+|+-- .+...+ ...+.+++...+.|++
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHCCCCCEE
Confidence 456899998765556678888998999876543211112223345799888833 111111 2344555545579999
Q ss_pred EEech
Q 032797 102 GVCMG 106 (133)
Q Consensus 102 GIClG 106 (133)
.+.--
T Consensus 80 ~ls~~ 84 (142)
T 2qxy_A 80 VLSAY 84 (142)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 88643
No 80
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=94.68 E-value=0.098 Score=34.77 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=50.6
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
..+++|+|+|........+.+.|+..|+++............+....+|.+|+--. -+...+ ...+.+++.....|+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~i 82 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMR--MPEMGGEVFLEQVAKSYPDIER 82 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESS--CSSSCHHHHHHHHHHHCTTSEE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHHhCCCCcE
Confidence 34578999987655666788889888988765432111112233347998888322 122222 344556655567899
Q ss_pred EEEechH
Q 032797 101 FGVCMGL 107 (133)
Q Consensus 101 LGIClG~ 107 (133)
+-+.-..
T Consensus 83 i~ls~~~ 89 (154)
T 2rjn_A 83 VVISGYA 89 (154)
T ss_dssp EEEECGG
T ss_pred EEEecCC
Confidence 8887543
No 81
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=94.52 E-value=0.067 Score=34.90 Aligned_cols=82 Identities=13% Similarity=0.243 Sum_probs=48.7
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHH--hCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~--~~~~~ 98 (133)
..+++|+|+|........+.+.|+..|+++..........+.+....+|.+|+--. .+... ..+.+.+++ .....
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIM--MPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESC--CSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhcccCCC
Confidence 45678999987655666788889888987664432111112233346898887322 12222 234566666 34578
Q ss_pred CEEEEec
Q 032797 99 PLFGVCM 105 (133)
Q Consensus 99 PvLGICl 105 (133)
|++.+.-
T Consensus 83 pii~~s~ 89 (142)
T 3cg4_A 83 AIVMLTA 89 (142)
T ss_dssp EEEEEEC
T ss_pred CEEEEEC
Confidence 8888764
No 82
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=94.46 E-value=0.091 Score=34.98 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=49.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
...++|+|+|........+.+.|++.|+.+..........+.+....+|.+|+--. -+...+ .+.+.+++...+.|+
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~i 89 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAH--LPQMDGPTLLARIHQQYPSTTR 89 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHCTTSEE
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCC--CCcCcHHHHHHHHHhHCCCCeE
Confidence 44578999987655666788889988987765432111122233457998888321 122222 345566665567899
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-+.-
T Consensus 90 i~~s~ 94 (153)
T 3hv2_A 90 ILLTG 94 (153)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 87764
No 83
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=94.41 E-value=0.086 Score=34.18 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=48.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC---CcCCc-hHHHHHHHHhCCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---APQDS-GISLQTVLELGPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~---~~~d~-~~~~~~i~~~~~~~P 99 (133)
.++|+|+|........+.+.|+..|+++..........+.+....+|.+|+--... .+... -...+.+++.....|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 82 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence 47899998765566678888988898876543211111223334689888833211 00222 234455665556799
Q ss_pred EEEEech
Q 032797 100 LFGVCMG 106 (133)
Q Consensus 100 vLGIClG 106 (133)
++.+.--
T Consensus 83 ii~ls~~ 89 (140)
T 2qr3_A 83 VVLFTAY 89 (140)
T ss_dssp EEEEEEG
T ss_pred EEEEECC
Confidence 9988743
No 84
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=94.27 E-value=0.11 Score=34.60 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=47.8
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (133)
.+++|+|+|........+.+.|+..|+++............+....+|.+|+--...+ .+.....+.++......|++.
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPG-MDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEE
Confidence 3578999987655666788889889998765432100011122346898888332111 122234555665556799998
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
+.-
T Consensus 81 ls~ 83 (155)
T 1qkk_A 81 VTG 83 (155)
T ss_dssp EEC
T ss_pred EEC
Confidence 864
No 85
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=94.27 E-value=0.072 Score=35.03 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=48.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHH--hCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~--~~~~~ 98 (133)
.+.++|+|+|........+.+.|+..|+++............+....+|.+|+--. .+... -.+.+.+++ .....
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEAN--MPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCC--CCCCCHHHHHHHHHcCcccCCC
Confidence 34578999998767777888889888887764432100112222347998888322 12222 234555665 34678
Q ss_pred CEEEEec
Q 032797 99 PLFGVCM 105 (133)
Q Consensus 99 PvLGICl 105 (133)
|++.+.-
T Consensus 84 pii~ls~ 90 (147)
T 2zay_A 84 PVIALSG 90 (147)
T ss_dssp CEEEEES
T ss_pred CEEEEeC
Confidence 9998874
No 86
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=94.20 E-value=0.15 Score=33.33 Aligned_cols=80 Identities=14% Similarity=0.279 Sum_probs=47.1
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcC-Cch-HHHHHHHHhCCCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQ-DSG-ISLQTVLELGPTVP 99 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~-d~~-~~~~~i~~~~~~~P 99 (133)
.+++|+|+|........+.+.|++.|+++..........+.+.. ..+|.+|+--. -|. ..+ .+.+.+++. .+.|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~-~~~~ 80 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIE--LGEGMDGVQTALAIQQI-SELP 80 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESS--CSSSCCHHHHHHHHHHH-CCCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEecc--CCCCCCHHHHHHHHHhC-CCCC
Confidence 45799999876556667888899999887654321111222333 47998887321 111 122 344555554 5789
Q ss_pred EEEEec
Q 032797 100 LFGVCM 105 (133)
Q Consensus 100 vLGICl 105 (133)
++-+.-
T Consensus 81 ii~ls~ 86 (140)
T 3h5i_A 81 VVFLTA 86 (140)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 887764
No 87
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=94.19 E-value=0.094 Score=32.48 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=47.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHhC--CCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG--PTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~~--~~~Pv 100 (133)
+++|+++|........+.+.|+..|+++............+....+|.+|+--.. +... ....+.+++.. ...|+
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CCCCHHHHHHHHHhccccCCCCE
Confidence 3689999876555667888899899987654321101122233478988884321 2222 23455566543 67898
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+.+.-
T Consensus 79 i~~~~ 83 (119)
T 2j48_A 79 VLFLG 83 (119)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 87763
No 88
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=94.06 E-value=0.11 Score=33.71 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=47.7
Q ss_pred cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCC-CC
Q 032797 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP-TV 98 (133)
Q Consensus 20 ~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~-~~ 98 (133)
....+++|+|+|........+.+.|+..|+.+............+....+|.+| .++ .+.-...+.+++. . ..
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-~~~----~~g~~~~~~l~~~-~~~~ 87 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEK-HSSI 87 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE-ECS----TTHHHHHHHHHHH-STTS
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE-EcC----ccHHHHHHHHHhc-CCCc
Confidence 335667999998755556678888888898776443211111223334799888 221 1122344555555 5 78
Q ss_pred CEEEEec
Q 032797 99 PLFGVCM 105 (133)
Q Consensus 99 PvLGICl 105 (133)
|++-+.-
T Consensus 88 ~ii~ls~ 94 (137)
T 2pln_A 88 VVLVSSD 94 (137)
T ss_dssp EEEEEES
T ss_pred cEEEEeC
Confidence 9988864
No 89
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=94.00 E-value=0.14 Score=33.32 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=49.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc--cCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~--~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
.++|+|+|........+.+.|++.|+.+..........+.+. ...+|.+|+--. -+...+ .+.+.+++.....|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMK--MPKLSGMDILREIKKITPHMAV 80 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESC--CSSSCHHHHHHHHHHHCTTCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCC--CCCCcHHHHHHHHHHhCCCCeE
Confidence 468999987555566788889989987765432111112232 347998888322 122222 345566665567899
Q ss_pred EEEech
Q 032797 101 FGVCMG 106 (133)
Q Consensus 101 LGIClG 106 (133)
+-+.--
T Consensus 81 i~ls~~ 86 (143)
T 3jte_A 81 IILTGH 86 (143)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 887753
No 90
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=93.94 E-value=0.077 Score=33.97 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=48.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv 100 (133)
+++|+|+|........+.+.|++.|+++..........+.+....+|.+|+--. -|...+ ...+.+++. ..+.|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLN--LPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhhccCCCCE
Confidence 468999987555666788889999987665432111112233457998888321 122222 345666665 567888
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-+.-
T Consensus 81 i~~s~ 85 (127)
T 3i42_A 81 VAVSG 85 (127)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 87763
No 91
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=93.80 E-value=0.12 Score=33.80 Aligned_cols=81 Identities=10% Similarity=0.159 Sum_probs=48.3
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHH--hCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLE--LGPT 97 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~--~~~~ 97 (133)
.+++|+|+|........+.+.|++.|....+...... ..+.+....+|.+|+--. .+...+ .+.+.+++ ...+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcccccC
Confidence 4578999987555566788889999988544433211 112233457998888321 122122 34555665 3467
Q ss_pred CCEEEEec
Q 032797 98 VPLFGVCM 105 (133)
Q Consensus 98 ~PvLGICl 105 (133)
.|++-+.-
T Consensus 82 ~pii~~s~ 89 (144)
T 3kht_A 82 TPIVILTD 89 (144)
T ss_dssp CCEEEEET
T ss_pred CCEEEEeC
Confidence 99998874
No 92
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=93.80 E-value=0.16 Score=33.60 Aligned_cols=81 Identities=11% Similarity=0.123 Sum_probs=47.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVP 99 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~~~~~P 99 (133)
..++|+|+|....+...+.+.|+. .|+.+...-.+... ...+....+|.+|+--.. +. +...+.+.+++.....|
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~~g~~~~~~l~~~~~~~~ 81 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTL--PGPGGIEATRHIRQWDGAAR 81 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCC--SSSCHHHHHHHHHHHCTTCC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCCCHHHHHHHHHHhCCCCe
Confidence 457899998765566677888887 67776522221111 122333479988883321 22 22234556666556789
Q ss_pred EEEEec
Q 032797 100 LFGVCM 105 (133)
Q Consensus 100 vLGICl 105 (133)
++.+.-
T Consensus 82 ii~ls~ 87 (153)
T 3cz5_A 82 ILIFTM 87 (153)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 988864
No 93
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=93.76 E-value=0.2 Score=37.98 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=47.5
Q ss_pred CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCC-------C---CCHHHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND-------E---LTVEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 25 ~~i~vid~~~~-----~~~~i~~~l~~~G~~~~v~~~~-------~---~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
+++++|-|... ....+.++|++.|+++.+.+.. . ...+... .++|.+|..|| ++.+.+
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~GG------DGT~l~ 78 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIG-QQADLAVVVGG------DGNMLG 78 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHH-HHCSEEEECSC------HHHHHH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcc-cCCCEEEEEcC------cHHHHH
Confidence 57888855321 2345778899999988765321 0 0112222 36899999999 444566
Q ss_pred HHHHh-CCCCCEEEEechH
Q 032797 90 TVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 90 ~i~~~-~~~~PvLGIClG~ 107 (133)
.++.+ ..++|+|||=.|.
T Consensus 79 a~~~~~~~~~P~lGI~~Gt 97 (292)
T 2an1_A 79 AARTLARYDINVIGINRGN 97 (292)
T ss_dssp HHHHHTTSSCEEEEBCSSS
T ss_pred HHHHhhcCCCCEEEEECCC
Confidence 66665 5679999996553
No 94
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=93.69 E-value=0.22 Score=31.96 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=48.3
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~-v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
++|+++|........+.+.|++.|+.+. ...........+....+|.+|+--. -|...+ ...+.+++...+.|++-
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVD--IPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETT--CSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecC--CCCCChHHHHHHHHhcCCCCeEEE
Confidence 6899998755566678888998997665 3332211123333347998888322 122222 34556666556789888
Q ss_pred EechH
Q 032797 103 VCMGL 107 (133)
Q Consensus 103 IClG~ 107 (133)
+.--.
T Consensus 80 ~s~~~ 84 (134)
T 3f6c_A 80 VSAKN 84 (134)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 77533
No 95
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=93.67 E-value=0.12 Score=33.48 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=47.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHh-CCCe-EEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHH--hCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGP 96 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~-~G~~-~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~--~~~ 96 (133)
..+++|+|+|........+.+.|+. .|++ +..........+.+....+|.+|+--.. +... -...+.+++ ...
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VGMDGFSICHRIKSTPATA 83 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TTSCHHHHHHHHHTSTTTT
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CCCcHHHHHHHHHhCcccc
Confidence 4467899998765566678888988 8998 5544321111122333479988884321 2222 234555665 346
Q ss_pred CCCEEEEec
Q 032797 97 TVPLFGVCM 105 (133)
Q Consensus 97 ~~PvLGICl 105 (133)
..|++.+.-
T Consensus 84 ~~~ii~~s~ 92 (143)
T 3cnb_A 84 NIIVIAMTG 92 (143)
T ss_dssp TSEEEEEES
T ss_pred CCcEEEEeC
Confidence 789998864
No 96
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=93.55 E-value=0.15 Score=34.21 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=48.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHccC--CCCEEEECCCCCCcCCc-hHHHHHHHHhCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRK--NPRGVLISPGPGAPQDS-GISLQTVLELGPT 97 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~-v~~~~~~~~~~l~~~--~~DgvIl~GG~~~~~d~-~~~~~~i~~~~~~ 97 (133)
.+.++|+|+|........+.+.|++.|+++. .........+.+... .+|.||+--. -+... -.+.+.+++....
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~--l~~~~g~~~~~~lr~~~~~ 111 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXIT--MPKMDGITCLSNIMEFDKN 111 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSS--CSSSCHHHHHHHHHHHCTT
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEecc--CCCccHHHHHHHHHhhCCC
Confidence 3446899998755556678888988998875 332210011222233 6898888322 12222 2345666665667
Q ss_pred CCEEEEec
Q 032797 98 VPLFGVCM 105 (133)
Q Consensus 98 ~PvLGICl 105 (133)
.|++-+.-
T Consensus 112 ~~ii~ls~ 119 (157)
T 3hzh_A 112 ARVIMISA 119 (157)
T ss_dssp CCEEEEES
T ss_pred CcEEEEec
Confidence 99988874
No 97
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=93.51 E-value=0.094 Score=34.00 Aligned_cols=82 Identities=10% Similarity=0.027 Sum_probs=48.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
...++|+|+|........+.+.|++.++.+..........+.+....+|.+|+--. -+...+ .+.+.+++.....|+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~i 82 (137)
T 3hdg_A 5 EVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIR--MPKLGGLEMLDRIKAGGAKPYV 82 (137)
T ss_dssp --CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHTTCCCEE
T ss_pred ccccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCcE
Confidence 34579999997655666788888888877765543111112233347998888432 122222 345556665567888
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-+.-
T Consensus 83 i~~s~ 87 (137)
T 3hdg_A 83 IVISA 87 (137)
T ss_dssp EECCC
T ss_pred EEEec
Confidence 87764
No 98
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=93.50 E-value=0.13 Score=33.32 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=47.7
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEE-EeCCCCCHHHHccCCCCEEEECCCCCCc-C-CchHHHHHHHHhCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEV-YRNDELTVEELKRKNPRGVLISPGPGAP-Q-DSGISLQTVLELGPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v-~~~~~~~~~~l~~~~~DgvIl~GG~~~~-~-d~~~~~~~i~~~~~~~ 98 (133)
...++|+|+|........+.+.|++.|+++.. ..........+....+|.+|+--. .+ . +.-...+.+++. ...
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~--~~~~~~g~~~~~~l~~~-~~~ 83 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIM--LCGALDGVETAARLAAG-CNL 83 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CCSSSCHHHHHHHHHHH-SCC
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecC--CCCCCCHHHHHHHHHhC-CCC
Confidence 45678999987555566788888888988763 332101112222346998888322 11 1 222344555555 679
Q ss_pred CEEEEec
Q 032797 99 PLFGVCM 105 (133)
Q Consensus 99 PvLGICl 105 (133)
|++-+.-
T Consensus 84 ~ii~ls~ 90 (140)
T 3cg0_A 84 PIIFITS 90 (140)
T ss_dssp CEEEEEC
T ss_pred CEEEEec
Confidence 9998864
No 99
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=93.36 E-value=0.18 Score=33.31 Aligned_cols=83 Identities=11% Similarity=0.108 Sum_probs=46.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~ 98 (133)
...++|+|+|....+...+.+.|+..+....+...... ..+.+....+|.+|+--. -+...+ .+.+.+++...+.
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~~~ 95 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVE--MPVKTGLEVLEWIRSEKLET 95 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSS--CSSSCHHHHHHHHHHTTCSC
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCC--CCCCcHHHHHHHHHHhCCCC
Confidence 44578999987555566778888887743333332211 112233457998888322 122222 3455566655678
Q ss_pred CEEEEech
Q 032797 99 PLFGVCMG 106 (133)
Q Consensus 99 PvLGIClG 106 (133)
|++-+.-.
T Consensus 96 ~ii~ls~~ 103 (150)
T 4e7p_A 96 KVVVVTTF 103 (150)
T ss_dssp EEEEEESC
T ss_pred eEEEEeCC
Confidence 99888753
No 100
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=93.28 E-value=0.087 Score=33.29 Aligned_cols=78 Identities=13% Similarity=0.241 Sum_probs=46.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCc-CCc-hHHHHHHHHh--CCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDS-GISLQTVLEL--GPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~-~d~-~~~~~~i~~~--~~~~P 99 (133)
.++|+|+|........+.+.|+..|+++............+....+|.+|+--. .+ ... ....+.+++. ....|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~--~~~~~~g~~~~~~l~~~~~~~~~~ 82 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVD--LSAGQNGYLICGKLKKDDDLKNVP 82 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESB--CGGGCBHHHHHHHHHHSTTTTTSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCC--CCCCCCHHHHHHHHhcCccccCCC
Confidence 368999987655666788888888998765432111112222346998887321 11 112 2345566664 46799
Q ss_pred EEEE
Q 032797 100 LFGV 103 (133)
Q Consensus 100 vLGI 103 (133)
++.+
T Consensus 83 ii~~ 86 (127)
T 2gkg_A 83 IVII 86 (127)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9888
No 101
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=93.28 E-value=0.29 Score=31.32 Aligned_cols=81 Identities=11% Similarity=0.188 Sum_probs=48.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHcc-------CCCCEEEECCCCCCcCCch-HHHHHHHH
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-------KNPRGVLISPGPGAPQDSG-ISLQTVLE 93 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~~-------~~~DgvIl~GG~~~~~d~~-~~~~~i~~ 93 (133)
+++|+|+|........+.+.|+..|+ .+..........+.+.. ..+|.+|+--.. +...+ ...+.+++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~~~~g~~~~~~l~~ 79 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL--PKKDGREVLAEIKS 79 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC--SSSCHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC--CcccHHHHHHHHHc
Confidence 57899998765566678888998888 55444321011122332 479988884321 22222 34555665
Q ss_pred hC--CCCCEEEEech
Q 032797 94 LG--PTVPLFGVCMG 106 (133)
Q Consensus 94 ~~--~~~PvLGIClG 106 (133)
.. ...|++.+.-.
T Consensus 80 ~~~~~~~pii~ls~~ 94 (140)
T 1k68_A 80 DPTLKRIPVVVLSTS 94 (140)
T ss_dssp STTGGGSCEEEEESC
T ss_pred CcccccccEEEEecC
Confidence 43 57899988743
No 102
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=93.15 E-value=0.22 Score=35.92 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCCCCeEEEEEC--------CCCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----c---cCCCCEEEECCCCC-CcC
Q 032797 21 KNNKNPIIVIDN--------YDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RKNPRGVLISPGPG-APQ 82 (133)
Q Consensus 21 ~~~~~~i~vid~--------~~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l----~---~~~~DgvIl~GG~~-~~~ 82 (133)
....+||.||-- +|++...+.+.|++.|+++..+. .| +.+.+ . ..++|.||.+||-+ .+.
T Consensus 27 ~~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~DlVIttGGts~g~~ 104 (185)
T 3rfq_A 27 ELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEA--DEVDIRNALNTAVIGGVDLVVSVGGTGVTPR 104 (185)
T ss_dssp --CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECS--CHHHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred CCCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCCCCCCCc
Confidence 356678888822 56677778999999999876432 23 22222 1 14799999999976 344
Q ss_pred Cc
Q 032797 83 DS 84 (133)
Q Consensus 83 d~ 84 (133)
|.
T Consensus 105 D~ 106 (185)
T 3rfq_A 105 DV 106 (185)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 103
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=93.02 E-value=0.22 Score=38.29 Aligned_cols=76 Identities=16% Similarity=0.294 Sum_probs=44.1
Q ss_pred CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCCC-----------------HH-----HHccCCCCEEEECCC
Q 032797 25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDELT-----------------VE-----ELKRKNPRGVLISPG 77 (133)
Q Consensus 25 ~~i~vid~~~~~-----~~~i~~~l~~~G~~~~v~~~~~~~-----------------~~-----~l~~~~~DgvIl~GG 77 (133)
++|++|-|..+- ...+.++|++.|+++.+....... .. +....++|.+|..||
T Consensus 5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GG 84 (307)
T 1u0t_A 5 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG 84 (307)
T ss_dssp CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeC
Confidence 578888664332 234778889999988765332110 11 011236899998898
Q ss_pred CCCcCCchHHHHHHHHh-CCCCCEEEEech
Q 032797 78 PGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (133)
Q Consensus 78 ~~~~~d~~~~~~~i~~~-~~~~PvLGIClG 106 (133)
- +.+....+.+ ..++|++||=.|
T Consensus 85 D------GT~l~a~~~~~~~~~pvlgi~~G 108 (307)
T 1u0t_A 85 D------GTFLRAAELARNASIPVLGVNLG 108 (307)
T ss_dssp H------HHHHHHHHHHHHHTCCEEEEECS
T ss_pred C------HHHHHHHHHhccCCCCEEEEeCC
Confidence 4 4445555553 346899999776
No 104
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=93.00 E-value=0.059 Score=34.70 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=33.2
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl 74 (133)
...+++|+|+|........+.+.|++.|+.+..........+.+....+|.+|+
T Consensus 3 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 56 (132)
T 3lte_A 3 LKQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTL 56 (132)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEE
T ss_pred CCCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 345679999987655666788889889997765532111112233457998887
No 105
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=92.98 E-value=0.059 Score=35.18 Aligned_cols=78 Identities=19% Similarity=0.324 Sum_probs=45.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----ccCCCCEEEECCCCCCcC--Cch-HHHHHHHHh
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQ--DSG-ISLQTVLEL 94 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~~~~DgvIl~GG~~~~~--d~~-~~~~~i~~~ 94 (133)
...++|+|+|........+.+.|+..|+++..... .++. ....+|.+|+-=. -|. ..+ .+.+.+++.
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----~~~a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~~~ 77 (136)
T 3kto_A 4 NHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFAS----AESFMRQQISDDAIGMIIEAH--LEDKKDSGIELLETLVKR 77 (136)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHTTSSSEEEEESS----HHHHTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHHHHHT
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCC----HHHHHHHHhccCCCEEEEeCc--CCCCCccHHHHHHHHHhC
Confidence 34579999987555566788888888987765432 2222 2246888887221 122 122 234555554
Q ss_pred CCCCCEEEEec
Q 032797 95 GPTVPLFGVCM 105 (133)
Q Consensus 95 ~~~~PvLGICl 105 (133)
..+.|++-+.-
T Consensus 78 ~~~~~ii~~s~ 88 (136)
T 3kto_A 78 GFHLPTIVMAS 88 (136)
T ss_dssp TCCCCEEEEES
T ss_pred CCCCCEEEEEc
Confidence 56789988764
No 106
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=92.75 E-value=0.18 Score=32.55 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=47.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCC-CCEEEECCCCCCcCCch-HHHHHHHHh-CCCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDSG-ISLQTVLEL-GPTVP 99 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~-~DgvIl~GG~~~~~d~~-~~~~~i~~~-~~~~P 99 (133)
..++|+|+|........+.+.|++.|+++............+.... +|.+|+--. -+...+ .+.+.+++. ....|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLR--MQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSC--CSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEecc--CCCCCHHHHHHHHHhcCCCCCC
Confidence 4578999997655666788889989988766432110111222234 898887322 122222 344555554 36788
Q ss_pred EEEEech
Q 032797 100 LFGVCMG 106 (133)
Q Consensus 100 vLGIClG 106 (133)
++-+.--
T Consensus 84 ii~~s~~ 90 (136)
T 3hdv_A 84 IIVVSGD 90 (136)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 8887743
No 107
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=92.68 E-value=0.19 Score=32.55 Aligned_cols=81 Identities=11% Similarity=0.020 Sum_probs=46.1
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~P 99 (133)
...++|+++|........+.+.|+..|+.+............+.. ..+|.+|+--. -+...+ ...+.+++.....|
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~l~~~~~~~~ 90 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQTKQPS 90 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSSSCCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCC
Confidence 556789999976556667888888889876544321001122333 47998887321 111122 23344444345788
Q ss_pred EEEEe
Q 032797 100 LFGVC 104 (133)
Q Consensus 100 vLGIC 104 (133)
++-+.
T Consensus 91 ii~ls 95 (138)
T 2b4a_A 91 VLILT 95 (138)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88876
No 108
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=92.50 E-value=0.33 Score=31.16 Aligned_cols=80 Identities=15% Similarity=0.236 Sum_probs=46.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
+.+|+|+|........+...|...|+.+............+....+|.+++--. -|...+ ...+.+++.....|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHcCCCCCCEEE
Confidence 468999987555556677888888987654432100112222336898887321 122222 34455665445689988
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
+.-
T Consensus 81 ~s~ 83 (136)
T 1mvo_A 81 LTA 83 (136)
T ss_dssp EEC
T ss_pred EEC
Confidence 764
No 109
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=92.41 E-value=0.39 Score=35.23 Aligned_cols=94 Identities=23% Similarity=0.255 Sum_probs=55.1
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCCE
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPL 100 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~~~~~Pv 100 (133)
..+++|+|+|........+.+.|++.|+++..........+.+....+|.+++-=. .|. +.-...+.|++.....|+
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~--mp~~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVN--MPNMDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEES--SCSSCCHHHHHHHHHHHCCSCE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHHHHHHHhcCCCCcE
Confidence 45678999997555556678888889998765543211122233347998886211 122 222345666665457999
Q ss_pred EEEech----HHHHHHHhCCe
Q 032797 101 FGVCMG----LQCIGEAFGDC 117 (133)
Q Consensus 101 LGIClG----~QlLa~a~GG~ 117 (133)
+.+.-- ...-+...|..
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~ 225 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMD 225 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCE
T ss_pred EEEECCCCHHHHHHHHHcCCc
Confidence 988642 23334455653
No 110
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=92.40 E-value=0.3 Score=35.44 Aligned_cols=85 Identities=14% Similarity=0.223 Sum_probs=49.8
Q ss_pred ccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCC
Q 032797 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPT 97 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~ 97 (133)
....+.++|+|+|........+...|+..|+++..........+.+....+|.+|+-=. -|...+ .+.+.+++...+
T Consensus 18 ~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~ 95 (250)
T 3r0j_A 18 ENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGMDGFGVLRRLRADGID 95 (250)
T ss_dssp --CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHTTCC
T ss_pred CCCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCC
Confidence 33445689999987555566778888888988764432100112222347998887221 222222 345556655557
Q ss_pred CCEEEEec
Q 032797 98 VPLFGVCM 105 (133)
Q Consensus 98 ~PvLGICl 105 (133)
.|++-+.-
T Consensus 96 ~~ii~lt~ 103 (250)
T 3r0j_A 96 APALFLTA 103 (250)
T ss_dssp CCEEEEEC
T ss_pred CCEEEEEC
Confidence 89988875
No 111
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=92.39 E-value=0.54 Score=29.37 Aligned_cols=79 Identities=11% Similarity=0.196 Sum_probs=45.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
++|+++|........+.+.|+..|+.+............+....+|.+++--. .|...+ ...+.+++.....|++-+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47899987555556677888888987664432111112233347898887322 222222 344555554457899887
Q ss_pred ec
Q 032797 104 CM 105 (133)
Q Consensus 104 Cl 105 (133)
.-
T Consensus 79 s~ 80 (121)
T 2pl1_A 79 TA 80 (121)
T ss_dssp ES
T ss_pred ec
Confidence 54
No 112
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=92.39 E-value=0.2 Score=32.54 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=48.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHcc-CCCCEEEECCCCCCc-CCc-hHHHHHHHH--hCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAP-QDS-GISLQTVLE--LGP 96 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~-~d~-~~~~~~i~~--~~~ 96 (133)
..++|+|+|........+...|++ .|+++..........+.+.. ..+|.+|+-=. -| ... -.+.+.+++ ...
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA--FPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC--SSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCCCCcHHHHHHHHHhCcccC
Confidence 457899998765556678888988 89987754321001112334 57998888221 11 111 124556666 456
Q ss_pred CCCEEEEec
Q 032797 97 TVPLFGVCM 105 (133)
Q Consensus 97 ~~PvLGICl 105 (133)
+.|++-+.-
T Consensus 81 ~~~ii~ls~ 89 (140)
T 3lua_A 81 NTPVIIATK 89 (140)
T ss_dssp TCCEEEEES
T ss_pred CCCEEEEeC
Confidence 899998874
No 113
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=92.35 E-value=0.27 Score=37.09 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=42.7
Q ss_pred CeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-C--CC
Q 032797 25 NPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G--PT 97 (133)
Q Consensus 25 ~~i~vid~~~~~~----~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~--~~ 97 (133)
|+++++-|..... ..+.++|++.|+++. ..++|.+|..|| ++.+....+.+ . .+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~~~~D~vv~lGG------DGT~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------DVEPEIVISIGG------DGTFLSAFHQYEERLDE 61 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------SSSCSEEEEEES------HHHHHHHHHHTGGGTTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------CCCCCEEEEEcC------cHHHHHHHHHHhhcCCC
Confidence 5788887743222 235566778888761 136899999998 44455666665 3 38
Q ss_pred CCEEEEechH
Q 032797 98 VPLFGVCMGL 107 (133)
Q Consensus 98 ~PvLGIClG~ 107 (133)
+|+|||=.|.
T Consensus 62 ~PilGIn~G~ 71 (272)
T 2i2c_A 62 IAFIGIHTGH 71 (272)
T ss_dssp CEEEEEESSS
T ss_pred CCEEEEeCCC
Confidence 9999997764
No 114
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=92.29 E-value=0.28 Score=31.84 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=47.8
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHcc----------CCCCEEEECCCCCCcCCch-HH
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR----------KNPRGVLISPGPGAPQDSG-IS 87 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~~----------~~~DgvIl~GG~~~~~d~~-~~ 87 (133)
...+++|+|+|........+.+.|+..|+ .+..........+.+.. ..+|.+|+--. .+...+ ..
T Consensus 3 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~ 80 (149)
T 1k66_A 3 GNATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLN--LPGTDGREV 80 (149)
T ss_dssp SCTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSC--CSSSCHHHH
T ss_pred CCCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECC--CCCCCHHHH
Confidence 34567899998765566678888998887 55544321111122332 47898888332 122222 23
Q ss_pred HHHHHHhC--CCCCEEEEec
Q 032797 88 LQTVLELG--PTVPLFGVCM 105 (133)
Q Consensus 88 ~~~i~~~~--~~~PvLGICl 105 (133)
.+.+++.. ...|++.+.-
T Consensus 81 ~~~l~~~~~~~~~~ii~~t~ 100 (149)
T 1k66_A 81 LQEIKQDEVLKKIPVVIMTT 100 (149)
T ss_dssp HHHHTTSTTGGGSCEEEEES
T ss_pred HHHHHhCcccCCCeEEEEeC
Confidence 34444432 5789998864
No 115
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=92.26 E-value=0.13 Score=33.84 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=49.8
Q ss_pred ccCCCCCeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHc-c-CCCCEEEECCCCCCcCCch-HHHHHHHHh
Q 032797 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELK-R-KNPRGVLISPGPGAPQDSG-ISLQTVLEL 94 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G-~~~~v~~~~~~~~~~l~-~-~~~DgvIl~GG~~~~~d~~-~~~~~i~~~ 94 (133)
.....+.+|+|+|........+.+.|++.| +++............+. . ..+|.+|+--. -+...+ .+.+.+++.
T Consensus 15 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~ 92 (146)
T 4dad_A 15 LYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALDTAELAAIEKLSRL 92 (146)
T ss_dssp CCCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCCHHHHHHHHHHHHH
T ss_pred CCcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCCccHHHHHHHHHHh
Confidence 334555799999876556667888898888 87776543210111122 2 57998888321 111111 234555555
Q ss_pred CCCCCEEEEec
Q 032797 95 GPTVPLFGVCM 105 (133)
Q Consensus 95 ~~~~PvLGICl 105 (133)
....|++-+.-
T Consensus 93 ~~~~~ii~lt~ 103 (146)
T 4dad_A 93 HPGLTCLLVTT 103 (146)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCcEEEEeC
Confidence 56789888764
No 116
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=92.16 E-value=0.6 Score=28.97 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=46.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
++|+++|........+.+.|+..|+.+..........+.+....+|.+++-=. -|...+ ...+.+++.....|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIE--MPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHccCCCCeEEEE
Confidence 47999987555566678888888987764432111112233347898887321 122222 345566665567888877
Q ss_pred ec
Q 032797 104 CM 105 (133)
Q Consensus 104 Cl 105 (133)
.-
T Consensus 80 s~ 81 (116)
T 3a10_A 80 TA 81 (116)
T ss_dssp ES
T ss_pred EC
Confidence 53
No 117
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=91.99 E-value=0.69 Score=29.29 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=46.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
+.+|+++|........+...|+..|+.+............+....+|.+++-=. -|...+ ...+.+++.....|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLR--MPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECC--STTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999997655566677888888987764432100112223346887776211 122222 34455665556789988
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
+.-
T Consensus 81 ~s~ 83 (126)
T 1dbw_A 81 ITG 83 (126)
T ss_dssp EEC
T ss_pred EEC
Confidence 754
No 118
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=91.97 E-value=0.42 Score=33.65 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=47.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
.++|+|+|........+.+.|+..|+++..........+.+....+|.+|+--. -|...+ ...+.+++...+.|++-
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999987555566678888888988764432100112223347998887322 122222 34455665556789998
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
+.-
T Consensus 80 ls~ 82 (225)
T 1kgs_A 80 LTA 82 (225)
T ss_dssp EES
T ss_pred EeC
Confidence 864
No 119
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=91.83 E-value=0.52 Score=30.05 Aligned_cols=80 Identities=9% Similarity=0.049 Sum_probs=45.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVP 99 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~P 99 (133)
..++|+|+|........+...|+ .|+++..........+.+....+|.+|+--. -+...+ .+.+.+++. ..+.|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVN--MDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhCCccCCCC
Confidence 35789999875555556667777 7887765432111122233457998888322 122222 345556654 35789
Q ss_pred EEEEec
Q 032797 100 LFGVCM 105 (133)
Q Consensus 100 vLGICl 105 (133)
++-+.-
T Consensus 80 ii~~s~ 85 (133)
T 3nhm_A 80 VIFVSG 85 (133)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 988764
No 120
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=91.81 E-value=0.65 Score=29.51 Aligned_cols=92 Identities=14% Similarity=0.243 Sum_probs=51.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv 100 (133)
..+|+|+|........+...|+..|+++..........+.+....+|.+++-=. -|...+ ...+.+++. ..+.|+
T Consensus 2 ~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--~p~~~g~~~~~~l~~~~~~~~~pi 79 (122)
T 3gl9_A 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVMDGFTVLKKLQEKEEWKRIPV 79 (122)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--CCCCcHHHHHHHHHhcccccCCCE
Confidence 358999986545555677888889988765432111122233457998888321 232233 334555543 257899
Q ss_pred EEEec----hHHHHHHHhCCe
Q 032797 101 FGVCM----GLQCIGEAFGDC 117 (133)
Q Consensus 101 LGICl----G~QlLa~a~GG~ 117 (133)
+-+.- ....-+...|..
T Consensus 80 i~~s~~~~~~~~~~~~~~Ga~ 100 (122)
T 3gl9_A 80 IVLTAKGGEEDESLALSLGAR 100 (122)
T ss_dssp EEEESCCSHHHHHHHHHTTCS
T ss_pred EEEecCCchHHHHHHHhcChh
Confidence 98873 222334455654
No 121
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=91.75 E-value=0.66 Score=29.32 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=45.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
+.+|+|+|........+...|+..|+++..........+.+....+|.+++-=. -|...+ ...+.+++ ..+.|++-
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~~g~~~~~~lr~-~~~~~ii~ 78 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNKDGVEVCREVRK-KYDMPIIM 78 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTTHHHHHHHHHHT-TCCSCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCCEEE
Confidence 358999987555556677888889988765432100112233457998887221 122222 23344444 34689887
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
+.-
T Consensus 79 ~t~ 81 (120)
T 3f6p_A 79 LTA 81 (120)
T ss_dssp EEE
T ss_pred EEC
Confidence 764
No 122
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.72 E-value=0.039 Score=39.05 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCCC-------------HHHHccCCCCEEEECCCCCCcC---Cc
Q 032797 24 KNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELT-------------VEELKRKNPRGVLISPGPGAPQ---DS 84 (133)
Q Consensus 24 ~~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~~~~~~-------------~~~l~~~~~DgvIl~GG~~~~~---d~ 84 (133)
..+|+.+..-+-.+ ..+...+|. -+...+|..+.. ..+..+.++|.+||.||-..|. +.
T Consensus 26 ~~kIvf~Gs~GvCtPFaeL~~YaiR~--~~~~FiP~~d~e~a~~l~~~~~G~~~~~~~~~~~D~vVllGGLAMPk~~v~~ 103 (157)
T 2r47_A 26 AERIGFAGVPGVCTPFAQLFAYAVRD--KDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDI 103 (157)
T ss_dssp CSEEEEEECTTTTHHHHHHHHHHTTT--SEEEEEETTCGGGCEEEEEETTEEEEEEECCCCEEEEEEEGGGGSTTTSCCH
T ss_pred CCeEEEECCCeeecCHHhhheeeeeC--CceEEcCCCChhHceEEEEecCceEeccccCCCCCEEEEeccccCCCCCCCH
Confidence 56888887654333 234445555 466666653211 0111114789999999966665 44
Q ss_pred hHHHHHHHHh-CCCCCEEEEec
Q 032797 85 GISLQTVLEL-GPTVPLFGVCM 105 (133)
Q Consensus 85 ~~~~~~i~~~-~~~~PvLGICl 105 (133)
+...++|..+ +....+.|||+
T Consensus 104 e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 104 EDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCCEEEEEh
Confidence 5567788876 45567999997
No 123
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=91.67 E-value=0.36 Score=30.50 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=46.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
+.+|+|+|....+...+.+.|+..|+++..........+.+....+|.+++-=. -|...+ ...+.+++.....|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMK--IPGMDGIEILKRMKVIDENIRVII 80 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CTTCCHHHHHHHHHHHCTTCEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHHhCCCCCEEE
Confidence 358999987555566677888888987654322100112222346898887221 122222 34455665556789888
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
+.-
T Consensus 81 ~s~ 83 (124)
T 1srr_A 81 MTA 83 (124)
T ss_dssp EES
T ss_pred EEc
Confidence 764
No 124
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=91.60 E-value=0.47 Score=30.52 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=46.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
.++|+|+|........+...|+..|+.+..........+.+....+|.+|+--. -|...+ ...+.+++.....|++-
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIK--LPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSB--CSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCchHHHHHHHHhhCCCCcEEE
Confidence 468999987555566678888888987764432111112233347898887321 122222 34455665555788887
Q ss_pred Ee
Q 032797 103 VC 104 (133)
Q Consensus 103 IC 104 (133)
+.
T Consensus 81 ~s 82 (132)
T 3crn_A 81 VT 82 (132)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 125
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=91.57 E-value=1.6 Score=33.57 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=53.7
Q ss_pred ccccCCCCCeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCC-CHH----HHccCCCCEEEECCCCCCcCCc
Q 032797 17 DKKSKNNKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVE----ELKRKNPRGVLISPGPGAPQDS 84 (133)
Q Consensus 17 ~~~~~~~~~~i~vid~~~~~-------~~~i~~~l~~~G~~~~v~~~~~~-~~~----~l~~~~~DgvIl~GG~~~~~d~ 84 (133)
|++.+.+.+++++|-|..+- ...+.+.|++.|+++.+...... ... +....++|.||+.||-|
T Consensus 17 ~~~~~m~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG----- 91 (337)
T 2qv7_A 17 PRGSHMMRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG----- 91 (337)
T ss_dssp --CCCSCCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH-----
T ss_pred ccccccccceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch-----
Confidence 44444444568887664332 12466778889998887765322 111 12234789999999944
Q ss_pred hHHHHHHHHh---CCCCCEEEEechHH-HHHHHhC
Q 032797 85 GISLQTVLEL---GPTVPLFGVCMGLQ-CIGEAFG 115 (133)
Q Consensus 85 ~~~~~~i~~~---~~~~PvLGIClG~Q-lLa~a~G 115 (133)
.+.+.+..+ ..++|+.+|=.|-- .+|+.+|
T Consensus 92 -Tv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg 125 (337)
T 2qv7_A 92 -TLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALH 125 (337)
T ss_dssp -HHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred -HHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence 344444443 45788888866643 3455544
No 126
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=91.20 E-value=0.74 Score=34.84 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=45.3
Q ss_pred CCeEEEEECC--CCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCC
Q 032797 24 KNPIIVIDNY--DSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTV 98 (133)
Q Consensus 24 ~~~i~vid~~--~~~~~~i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~ 98 (133)
+++||+|+.. ......+.++|++.|+++++++..+. +.+++. +||.||+.--..+... ....+.|+++ .++-
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~yDvIIl~d~~~~~l~-~~~~~~L~~yV~~GG 80 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA--KQDLVILSDYPAERMT-AQAIDQLVTMVKAGC 80 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH--TCSEEEEESCCGGGBC-HHHHHHHHHHHHTTC
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh--cCCEEEEcCCccccCC-HHHHHHHHHHHHhCC
Confidence 4689999631 12345688899999999999876543 345564 8999999632211112 2234555553 3344
Q ss_pred CEEEE
Q 032797 99 PLFGV 103 (133)
Q Consensus 99 PvLGI 103 (133)
=++.+
T Consensus 81 gLi~~ 85 (259)
T 3rht_A 81 GLVML 85 (259)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 45554
No 127
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=91.14 E-value=0.2 Score=32.51 Aligned_cols=82 Identities=12% Similarity=0.237 Sum_probs=46.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHcc------CCCCEEEECCCCCCcCCch-HHHHHHHH
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSG-ISLQTVLE 93 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~~------~~~DgvIl~GG~~~~~d~~-~~~~~i~~ 93 (133)
.+++|+|+|........+.+.|++.|. .+..........+.+.. ..+|.+|+--. -+...+ ...+.+++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~--l~~~~g~~~~~~l~~ 83 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDIN--IPKMNGIEFLKELRD 83 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETT--CTTSCHHHHHHHHTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecC--CCCCCHHHHHHHHHc
Confidence 457899998765566678888888887 55554321111122322 46898888322 122222 23344444
Q ss_pred hC--CCCCEEEEech
Q 032797 94 LG--PTVPLFGVCMG 106 (133)
Q Consensus 94 ~~--~~~PvLGIClG 106 (133)
.. ...|++.+.-.
T Consensus 84 ~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 84 DSSFTDIEVFVLTAA 98 (143)
T ss_dssp SGGGTTCEEEEEESC
T ss_pred CccccCCcEEEEeCC
Confidence 32 57899888643
No 128
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=91.05 E-value=0.56 Score=33.44 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=34.2
Q ss_pred CeEEEEEC---------CCCchHHHHHHHHhCCCeEEEEe--CCCCCHHHHc----c--CCCCEEEECCCCC
Q 032797 25 NPIIVIDN---------YDSFTYNLCQYMGELGYHFEVYR--NDELTVEELK----R--KNPRGVLISPGPG 79 (133)
Q Consensus 25 ~~i~vid~---------~~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l~----~--~~~DgvIl~GG~~ 79 (133)
+++.||-- .|++...+.+.|++.|+++..+. .| +.+.+. . .++|.||.+||-+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~DlVittGG~g 73 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD--DLDEIGWAFRVALEVSDLVVSSGGLG 73 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCEEEEcCCCc
Confidence 67777732 34555668899999999876432 23 222221 1 2599999999976
No 129
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=90.67 E-value=0.51 Score=33.07 Aligned_cols=59 Identities=10% Similarity=0.163 Sum_probs=33.9
Q ss_pred CCeEEEEE---------CCCCchHHHHHH----HHhCCCeEEEEe--CCCCCHHHH----c---cCCCCEEEECCCCC-C
Q 032797 24 KNPIIVID---------NYDSFTYNLCQY----MGELGYHFEVYR--NDELTVEEL----K---RKNPRGVLISPGPG-A 80 (133)
Q Consensus 24 ~~~i~vid---------~~~~~~~~i~~~----l~~~G~~~~v~~--~~~~~~~~l----~---~~~~DgvIl~GG~~-~ 80 (133)
.+|+.||- -+|++...+.+. |++.|+++..+. .| +.+.+ . ..++|.||.+||-+ +
T Consensus 5 ~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~~DlVittGG~g~~ 82 (167)
T 2g2c_A 5 HIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPE--GYDTVVEAIATALKQGARFIITAGGTGIR 82 (167)
T ss_dssp EEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECS--SHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred ccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 35777772 245666778889 999998765332 23 22222 1 12599999999976 3
Q ss_pred cCCc
Q 032797 81 PQDS 84 (133)
Q Consensus 81 ~~d~ 84 (133)
+.|.
T Consensus 83 ~~D~ 86 (167)
T 2g2c_A 83 AKNQ 86 (167)
T ss_dssp TTCC
T ss_pred CCcC
Confidence 4443
No 130
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=90.65 E-value=0.41 Score=33.01 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=47.5
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~~~~~~~PvL 101 (133)
.+++|+|+|........+...|+..|+.+..........+.+....+|.+|+-=. -|... -.+.+.+++.....|++
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCccHHHHHHHHHhcCCCCCEE
Confidence 4578999987555566678888889987754432111122233457998887211 12212 23455666655678988
Q ss_pred EEec
Q 032797 102 GVCM 105 (133)
Q Consensus 102 GICl 105 (133)
-+.-
T Consensus 84 ~lt~ 87 (184)
T 3rqi_A 84 VLTG 87 (184)
T ss_dssp EEES
T ss_pred EEeC
Confidence 7763
No 131
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=90.52 E-value=0.35 Score=31.88 Aligned_cols=82 Identities=7% Similarity=-0.003 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhC-CCe-EEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~-G~~-~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (133)
.++|+|+|........+.+.|++. |+. +............+.. ..+|.+|+--... ..+.-...+.+++.....|+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLP-DAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCC-CCchHHHHHHHHHhCCCCeE
Confidence 468999987555566788888876 773 3333221001122333 4799888833211 11222345556655557898
Q ss_pred EEEech
Q 032797 101 FGVCMG 106 (133)
Q Consensus 101 LGIClG 106 (133)
+.++--
T Consensus 82 i~ls~~ 87 (154)
T 2qsj_A 82 ALISGE 87 (154)
T ss_dssp EEC---
T ss_pred EEEeCC
Confidence 887643
No 132
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=90.48 E-value=0.72 Score=32.59 Aligned_cols=80 Identities=11% Similarity=0.228 Sum_probs=47.0
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
..++|+|+|........+...|+..|+++..........+.+....+|.+|+--. -|...+ ...+.+++...+.|++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~ii 83 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVC 83 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence 3478999987555566788888888987764332100112233347998887322 122222 3445566545678998
Q ss_pred EEe
Q 032797 102 GVC 104 (133)
Q Consensus 102 GIC 104 (133)
-+.
T Consensus 84 ~lt 86 (233)
T 1ys7_A 84 VLS 86 (233)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 133
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=90.43 E-value=0.54 Score=29.39 Aligned_cols=80 Identities=15% Similarity=0.289 Sum_probs=45.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
+++|+++|........+.+.|+..|+++...-.+... .+.+....+|.+++-=. -|...+ ...+.+++.....|++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDIT--MPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECS--CGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHhhCCCCeEE
Confidence 4689999875555566778888889875322222111 12222336898887321 122222 3445565555678988
Q ss_pred EEec
Q 032797 102 GVCM 105 (133)
Q Consensus 102 GICl 105 (133)
-+.-
T Consensus 80 ~~s~ 83 (120)
T 1tmy_A 80 VCSA 83 (120)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 134
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=90.40 E-value=1.5 Score=30.71 Aligned_cols=78 Identities=14% Similarity=0.032 Sum_probs=45.7
Q ss_pred CeEEEEEC-CCCchHHHH----HHHHh-CCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCC-chHHHHHHHHh---
Q 032797 25 NPIIVIDN-YDSFTYNLC----QYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL--- 94 (133)
Q Consensus 25 ~~i~vid~-~~~~~~~i~----~~l~~-~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d-~~~~~~~i~~~--- 94 (133)
++|++|-. ..+++..+. +.+++ .|.+++++...+.+.+++. ++|+||+ |.|---.. ...+..++.++
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~--~aD~ii~-gsP~y~g~~~~~lk~fld~~~~~ 81 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVLGD 81 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTGGG
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHH--hCCEEEE-EeCccCCcCCHHHHHHHHHHhhh
Confidence 57877742 334455444 44555 7888888887655566665 6999999 54432111 23344555543
Q ss_pred ----CCCCCEEEEec
Q 032797 95 ----GPTVPLFGVCM 105 (133)
Q Consensus 95 ----~~~~PvLGICl 105 (133)
-.++|+.-++-
T Consensus 82 ~~~~l~gk~~~~~~t 96 (188)
T 2ark_A 82 LWGEIDGKIACAFSS 96 (188)
T ss_dssp TTTSCTTCEEEEEEE
T ss_pred hHHHhCCCeEEEEEE
Confidence 15777765554
No 135
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=90.39 E-value=0.34 Score=31.94 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=47.2
Q ss_pred cccccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-C-HHHHccCCCCEEEECCCCCCcCCc-hHHHHHHH
Q 032797 16 DDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-T-VEELKRKNPRGVLISPGPGAPQDS-GISLQTVL 92 (133)
Q Consensus 16 ~~~~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~-~~~l~~~~~DgvIl~GG~~~~~d~-~~~~~~i~ 92 (133)
+.......+.+|+|+|........+.+.|++.|....+...... . .+.+....+|.+|+--.. +... -...+.++
T Consensus 7 ~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~ 84 (152)
T 3eul_A 7 HMSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM--PGMDGAQVAAAVR 84 (152)
T ss_dssp -------CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHH
T ss_pred CCCCCCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHH
Confidence 33445567789999997555566788888888855433222211 1 122233479988883221 1222 23455566
Q ss_pred HhCCCCCEEEEec
Q 032797 93 ELGPTVPLFGVCM 105 (133)
Q Consensus 93 ~~~~~~PvLGICl 105 (133)
+.....|++-+.-
T Consensus 85 ~~~~~~~ii~~s~ 97 (152)
T 3eul_A 85 SYELPTRVLLISA 97 (152)
T ss_dssp HTTCSCEEEEEES
T ss_pred hcCCCCeEEEEEc
Confidence 6556788887764
No 136
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=90.28 E-value=0.83 Score=29.56 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=47.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv 100 (133)
+.+|+|+|........+...|+..|+++..........+.+....+|.+++-=. -|...+ .+.+.+++. ...+|+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHcCCCcCCccE
Confidence 468999987555556678888889987765432111112233357998887211 222233 345566653 457899
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-+.-
T Consensus 82 i~~t~ 86 (136)
T 3t6k_A 82 LMLTA 86 (136)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88774
No 137
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=90.26 E-value=1.1 Score=31.50 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=36.2
Q ss_pred CCCCeEEEEECC--------------CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH--------ccCCCCEEEECCC
Q 032797 22 NNKNPIIVIDNY--------------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL--------KRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid~~--------------~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l--------~~~~~DgvIl~GG 77 (133)
...+|+.||--. |.....+.+.|++.|+++.-.. .|+ .+.+ ...++|.||.+||
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEecCC
Confidence 455788888322 4444568899999999875432 232 2221 1246899999999
Q ss_pred CC
Q 032797 78 PG 79 (133)
Q Consensus 78 ~~ 79 (133)
-+
T Consensus 91 ~g 92 (178)
T 3iwt_A 91 TG 92 (178)
T ss_dssp CS
T ss_pred cc
Confidence 76
No 138
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=90.21 E-value=0.35 Score=33.97 Aligned_cols=60 Identities=25% Similarity=0.333 Sum_probs=37.2
Q ss_pred CCeEEEEE---------CCCCchHHHHHHHHhCCCeEE---EEeCCCCCHH-HHc---cCCCCEEEECCCCC-CcCCc
Q 032797 24 KNPIIVID---------NYDSFTYNLCQYMGELGYHFE---VYRNDELTVE-ELK---RKNPRGVLISPGPG-APQDS 84 (133)
Q Consensus 24 ~~~i~vid---------~~~~~~~~i~~~l~~~G~~~~---v~~~~~~~~~-~l~---~~~~DgvIl~GG~~-~~~d~ 84 (133)
.+|+.||- -+|++...+.+.|++.|+++. +++.+ .... .+. ..++|.||.+||.+ .++|.
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D~ 83 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTDS 83 (164)
T ss_dssp CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTCC
T ss_pred CCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCcc
Confidence 46787773 246667778999999999874 34432 2111 121 13699999999976 34443
No 139
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=90.07 E-value=1.1 Score=32.06 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=45.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
.++|+|+|........+...|+..|+++..........+.+....+|.+|+--. -|...+ ...+.+++. .+.|++-
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~~g~~~~~~lr~~-~~~~ii~ 81 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLM--LPGMNGIDVCRVLRAD-SGVPIVM 81 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHTT-CCCCEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhC-CCCcEEE
Confidence 468999987555566778888888998765433211122233347998887321 122222 233444443 3789988
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
+.-
T Consensus 82 lt~ 84 (238)
T 2gwr_A 82 LTA 84 (238)
T ss_dssp EEE
T ss_pred EeC
Confidence 753
No 140
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.06 E-value=0.72 Score=29.92 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=45.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
.+|+|+|........+.+.|+..|+++..........+.+....+|.+|+-=. -|...+ ...+.+++.....|++-+
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLK--LPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSB--CSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 48999988666677788888888887654322100112222347898887321 122222 344556654456888877
Q ss_pred ec
Q 032797 104 CM 105 (133)
Q Consensus 104 Cl 105 (133)
.-
T Consensus 83 s~ 84 (137)
T 3cfy_A 83 TA 84 (137)
T ss_dssp ES
T ss_pred Ee
Confidence 53
No 141
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=90.00 E-value=0.65 Score=32.58 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=35.1
Q ss_pred CCCCeEEEEECC-------CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----c--cC--CCCEEEECCCCC
Q 032797 22 NNKNPIIVIDNY-------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RK--NPRGVLISPGPG 79 (133)
Q Consensus 22 ~~~~~i~vid~~-------~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l----~--~~--~~DgvIl~GG~~ 79 (133)
...+++.||--+ |++...+.+.|++.|+++.... .| +.+.+ . .. ++|.||.+||-+
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKD--DKESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECS--SHHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 455788888433 3444568888999999875332 22 22222 1 12 799999999976
No 142
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=89.94 E-value=0.63 Score=31.39 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT 97 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~ 97 (133)
..++||+|+|-.......+.+.|++.|+.......+... .+.+....||.|++ -= .-|.-.+ ++.+.||+. ..+
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~Dlill-D~-~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVT-DW-NMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEE-ES-CCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEE-cC-CCCCCCHHHHHHHHHhCCCCCC
Confidence 456799999854444556778899999864332222111 12223347998887 11 1233344 345677763 367
Q ss_pred CCEEEEec----hHHHHHHHhCCe
Q 032797 98 VPLFGVCM----GLQCIGEAFGDC 117 (133)
Q Consensus 98 ~PvLGICl----G~QlLa~a~GG~ 117 (133)
+||+-+-- ....-+...|..
T Consensus 88 ipvI~lTa~~~~~~~~~~~~~Ga~ 111 (134)
T 3to5_A 88 LPVLMITAEAKREQIIEAAQAGVN 111 (134)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCHHHHHHHHHCCCC
Confidence 99988763 222234455664
No 143
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=89.86 E-value=0.68 Score=32.65 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=37.6
Q ss_pred CCCCCeEEEEECCC-------CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH-------ccC-CCCEEEECCCCC-CcC
Q 032797 21 KNNKNPIIVIDNYD-------SFTYNLCQYMGELGYHFEVYR--NDELTVEEL-------KRK-NPRGVLISPGPG-APQ 82 (133)
Q Consensus 21 ~~~~~~i~vid~~~-------~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l-------~~~-~~DgvIl~GG~~-~~~ 82 (133)
+...+++.||--+| ++...+.+.|++.|+++.... .| +.+.+ ... ++|.||.+||-+ ++.
T Consensus 7 ~~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~~DlVittGG~g~~~~ 84 (172)
T 1mkz_A 7 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKE--NRYAIRAQVSAWIASDDVQVVLITGGTGLTEG 84 (172)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHSSSCCEEEEESCCSSSTT
T ss_pred CCCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCC
Confidence 34567888884433 334558888999999875332 23 22222 112 499999999976 344
Q ss_pred C
Q 032797 83 D 83 (133)
Q Consensus 83 d 83 (133)
|
T Consensus 85 D 85 (172)
T 1mkz_A 85 D 85 (172)
T ss_dssp C
T ss_pred C
Confidence 4
No 144
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=89.74 E-value=0.72 Score=30.32 Aligned_cols=81 Identities=10% Similarity=0.126 Sum_probs=45.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCC-CCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~-~DgvIl~GG~~~~~d~-~~~~~~i~~~~~~~Pv 100 (133)
++++|+|+|........+.+.|+. |+++..........+.+.... ||.+|+--. -+... -.+.+.+++.....|+
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~i 79 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMR--MPGMEGTEVIQKARLISPNSVY 79 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESC--CSSSCHHHHHHHHHHHCSSCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCC--CCCCcHHHHHHHHHhcCCCcEE
Confidence 457899998755555567777765 877765432111112232234 698887322 11222 2345566665567898
Q ss_pred EEEech
Q 032797 101 FGVCMG 106 (133)
Q Consensus 101 LGIClG 106 (133)
+-+.-.
T Consensus 80 i~~s~~ 85 (151)
T 3kcn_A 80 LMLTGN 85 (151)
T ss_dssp EEEECG
T ss_pred EEEECC
Confidence 887753
No 145
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=89.64 E-value=0.8 Score=31.81 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=46.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
...+|+|+|........+...|+..|+++..........+.+....+|.+|+-=. -|...+ ...+.+++...+.|++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~ii 80 (208)
T 1yio_A 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISDGIPIV 80 (208)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence 3468999987555566778888888988764432100011122346888776211 122222 3455566555678998
Q ss_pred EEec
Q 032797 102 GVCM 105 (133)
Q Consensus 102 GICl 105 (133)
-+.-
T Consensus 81 ~ls~ 84 (208)
T 1yio_A 81 FITA 84 (208)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8763
No 146
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=89.61 E-value=0.58 Score=32.66 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=31.7
Q ss_pred CCCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----c---cC-CCCEEEECCCCC-CcCCc
Q 032797 33 YDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RK-NPRGVLISPGPG-APQDS 84 (133)
Q Consensus 33 ~~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l----~---~~-~~DgvIl~GG~~-~~~d~ 84 (133)
+|++...+.+.|++.|+++.... .| +.+.+ . .. ++|.||.+||-+ .+.|.
T Consensus 19 ~D~n~~~l~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~ 79 (164)
T 2is8_A 19 QDTTHLAIREVLAGGPFEVAAYELVPD--EPPMIKKVLRLWADREGLDLILTNGGTGLAPRDR 79 (164)
T ss_dssp CCCHHHHHHHHHTTSSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCC
T ss_pred ccchHHHHHHHHHHCCCeEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCC
Confidence 45666778899999998765332 23 22222 1 12 699999999976 34443
No 147
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=89.54 E-value=0.75 Score=28.79 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=44.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
..+|+++|........+.+.|+..|+.+............+....+|.+++-=. -|...+ ...+.+++ ....|++-
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~-~~~~~ii~ 78 (122)
T 1zgz_A 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RSTVGIIL 78 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TCCCEEEE
T ss_pred CcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCCChHHHHHHHHh-cCCCCEEE
Confidence 358999987555566788888888987754432100011223347898887221 122222 23444554 45678877
Q ss_pred Ee
Q 032797 103 VC 104 (133)
Q Consensus 103 IC 104 (133)
+.
T Consensus 79 ~s 80 (122)
T 1zgz_A 79 VT 80 (122)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 148
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=89.24 E-value=0.85 Score=29.92 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=47.0
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHc---------cCCCCEEEECCCCCCcCCch-HHHHH
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELK---------RKNPRGVLISPGPGAPQDSG-ISLQT 90 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~---------~~~~DgvIl~GG~~~~~d~~-~~~~~ 90 (133)
++++|+|+|........+.+.|++.|. .+..........+.+. ...+|.+|+-=. -|...+ .+.+.
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~~~g~~~~~~ 80 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPDMTGIDILKL 80 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSSSBHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC--CCCCcHHHHHHH
Confidence 357999998755556678888999998 4544332100112221 246898887321 122222 34566
Q ss_pred HHH--hCCCCCEEEEech
Q 032797 91 VLE--LGPTVPLFGVCMG 106 (133)
Q Consensus 91 i~~--~~~~~PvLGIClG 106 (133)
+++ ...+.|++-+.-.
T Consensus 81 lr~~~~~~~~pii~~t~~ 98 (152)
T 3heb_A 81 VKENPHTRRSPVVILTTT 98 (152)
T ss_dssp HHHSTTTTTSCEEEEESC
T ss_pred HHhcccccCCCEEEEecC
Confidence 666 3467899987743
No 149
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=89.23 E-value=0.53 Score=35.19 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCeEEEEeCC----C--CCHHHHccCCCCEEEECCCCCCcCC-------c----hHHHHHHHHh-CCCCC
Q 032797 38 YNLCQYMGELGYHFEVYRND----E--LTVEELKRKNPRGVLISPGPGAPQD-------S----GISLQTVLEL-GPTVP 99 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~~----~--~~~~~l~~~~~DgvIl~GG~~~~~d-------~----~~~~~~i~~~-~~~~P 99 (133)
..+.++|+..++++++++.. . .+.+++. +||.||+.+-+.+... . ....+.|+++ .++..
T Consensus 43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~--~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGg 120 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGG 120 (256)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhcCceEEEEecccchhhCCcChhHHh--cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCE
Confidence 35888999999999887421 1 1234454 7999999775432111 0 2234677774 56889
Q ss_pred EEEE
Q 032797 100 LFGV 103 (133)
Q Consensus 100 vLGI 103 (133)
+++|
T Consensus 121 ll~i 124 (256)
T 2gk3_A 121 LLMI 124 (256)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 150
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=88.97 E-value=1.3 Score=27.67 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=44.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
..+|+++|........+...|+..|+++..........+.+....+|.+++--. .|...+ ...+.+++. ...|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~-~~~~ii~ 79 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDIN--LPGKNGLLLARELREQ-ANVALMF 79 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhC-CCCcEEE
Confidence 458999987555556677888888887654332100112223347898887322 122222 234455544 5688887
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
+.-
T Consensus 80 ~s~ 82 (123)
T 1xhf_A 80 LTG 82 (123)
T ss_dssp EES
T ss_pred EEC
Confidence 753
No 151
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=88.91 E-value=2.4 Score=28.97 Aligned_cols=78 Identities=10% Similarity=0.133 Sum_probs=42.2
Q ss_pred CeEEEEE-CCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCchHHHHHHHHh---
Q 032797 25 NPIIVID-NYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLEL--- 94 (133)
Q Consensus 25 ~~i~vid-~~~~~~~~i~----~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~~~~~~~i~~~--- 94 (133)
|+|+|+- ...+.+..+. +.+.+.|+++++++....+..++.. .++|+||+ |.|---..... ..++..+
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspty~g~~p~-~~fl~~l~~~ 78 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVL-GTPPSQPSEAV-ATALSTIFAA 78 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEE-ECCBSSCCHHH-HHHHHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-EcCCcCCchhH-HHHHHHHHhh
Confidence 4666663 2334555544 4456679998888875445555421 26999998 55432122221 2333332
Q ss_pred -CCCCCEEEEe
Q 032797 95 -GPTVPLFGVC 104 (133)
Q Consensus 95 -~~~~PvLGIC 104 (133)
-.++|+.-++
T Consensus 79 ~l~gk~v~~fg 89 (161)
T 3hly_A 79 AHNKQAIGLFD 89 (161)
T ss_dssp CCTTSEEEEEC
T ss_pred hhCCCEEEEEE
Confidence 3567776654
No 152
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=88.69 E-value=0.79 Score=29.51 Aligned_cols=82 Identities=10% Similarity=0.139 Sum_probs=46.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHcc-----CCCCEEEECCCCCCcCCch-HHHHHHHH-
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSG-ISLQTVLE- 93 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~--~~~v~~~~~~~~~~l~~-----~~~DgvIl~GG~~~~~d~~-~~~~~i~~- 93 (133)
..++|+|+|........+...|+..|. .+..........+.+.. ..+|.||+-=. -|...+ .+.+.+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELIDLFKQH 85 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCCCHHHHHHHHHHh
Confidence 456899998755555667788888888 44433221001122333 57998888321 122222 34566666
Q ss_pred ---hCCCCCEEEEech
Q 032797 94 ---LGPTVPLFGVCMG 106 (133)
Q Consensus 94 ---~~~~~PvLGIClG 106 (133)
.....|++-+.-.
T Consensus 86 ~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSS 101 (146)
T ss_dssp CGGGTTTCEEEEECSS
T ss_pred hhhccCCCeEEEEeCC
Confidence 3467888877643
No 153
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=88.68 E-value=1.2 Score=27.96 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=45.0
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV 98 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~-~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~ 98 (133)
..++|+++|........+.+.|+..|+ .+..........+.+....+|.+++-=. -|...+ ...+.+++. ....
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhcccCCC
Confidence 457899998755555667788888887 4444332101112233346898877221 222222 334555542 3568
Q ss_pred CEEEEec
Q 032797 99 PLFGVCM 105 (133)
Q Consensus 99 PvLGICl 105 (133)
|++-+.-
T Consensus 81 ~ii~~s~ 87 (128)
T 1jbe_A 81 PVLMVTA 87 (128)
T ss_dssp CEEEEES
T ss_pred cEEEEec
Confidence 9988764
No 154
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=88.53 E-value=1.2 Score=31.36 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=53.6
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHcc-------------CCCCEEEECCCCCCcCCch-H
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKR-------------KNPRGVLISPGPGAPQDSG-I 86 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~-~~~v~~~~~~~~~~l~~-------------~~~DgvIl~GG~~~~~d~~-~ 86 (133)
..+++|+|+|........+.+.|+..|+ .+..........+.+.. ..+|.||+-=. -|...+ .
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~e 136 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYE 136 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHH
Confidence 4557999998755556678888999998 56554321111111221 26998887211 122222 3
Q ss_pred HHHHHHHh----CCCCCEEEEechH---HHH--HHHhCCe
Q 032797 87 SLQTVLEL----GPTVPLFGVCMGL---QCI--GEAFGDC 117 (133)
Q Consensus 87 ~~~~i~~~----~~~~PvLGIClG~---QlL--a~a~GG~ 117 (133)
+.+.|++. ...+|++-+.--. +.. +...|..
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~ 176 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMD 176 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCS
T ss_pred HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCC
Confidence 45566653 3679999887532 333 3455654
No 155
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=88.21 E-value=1.2 Score=31.43 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=35.4
Q ss_pred CCCeEEEEEC---------CCCchHHHHHHHH---hCCCeEEEEe-CCCCCHHHH-------cc-CCCCEEEECCCCC-C
Q 032797 23 NKNPIIVIDN---------YDSFTYNLCQYMG---ELGYHFEVYR-NDELTVEEL-------KR-KNPRGVLISPGPG-A 80 (133)
Q Consensus 23 ~~~~i~vid~---------~~~~~~~i~~~l~---~~G~~~~v~~-~~~~~~~~l-------~~-~~~DgvIl~GG~~-~ 80 (133)
..+++.||-- +|++...+.+.|+ +.|+++.... .| +.+.+ .. .++|.||.+||-+ +
T Consensus 4 ~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~D--d~~~I~~~l~~~~~~~~~DlVittGG~g~g 81 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPD--ERDLIEKTLIELADEKGCSLILTTGGTGPA 81 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred CCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 4568887743 3444556788777 8899773211 22 22222 11 1699999999976 4
Q ss_pred cCCc
Q 032797 81 PQDS 84 (133)
Q Consensus 81 ~~d~ 84 (133)
+.|.
T Consensus 82 ~~D~ 85 (178)
T 2pbq_A 82 PRDV 85 (178)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 4443
No 156
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=87.96 E-value=1.7 Score=27.91 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=46.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv 100 (133)
.++|+|+|........+.+.|+..|+.+..........+.+....+|.+|+-=. -|...+ .+.+.+++. ...+|+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIM--MEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHcCcccCCCCE
Confidence 358999987555566678888888987664322100112233347898887221 122222 344556553 357899
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-+.-
T Consensus 81 i~ls~ 85 (138)
T 3c3m_A 81 LMLTA 85 (138)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88763
No 157
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=87.92 E-value=0.16 Score=34.02 Aligned_cols=80 Identities=10% Similarity=0.127 Sum_probs=45.7
Q ss_pred cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCC
Q 032797 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPT 97 (133)
Q Consensus 20 ~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~ 97 (133)
+...++||+|+|-.......+.+.|++.|+++.-...+.. ..+.+....||.+++== .-|...+ +..+.+++ .+
T Consensus 4 m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi--~mP~~~G~el~~~lr~--~~ 79 (123)
T 2lpm_A 4 MTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDV--NLDGEPSYPVADILAE--RN 79 (123)
T ss_dssp CCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECS--SSSSCCSHHHHHHHHH--TC
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEec--CCCCCCHHHHHHHHHc--CC
Confidence 3455689999987666677788899999987531111100 11223345899888711 1122233 23445554 45
Q ss_pred CCEEEE
Q 032797 98 VPLFGV 103 (133)
Q Consensus 98 ~PvLGI 103 (133)
+|++-+
T Consensus 80 ipvI~l 85 (123)
T 2lpm_A 80 VPFIFA 85 (123)
T ss_dssp CSSCCB
T ss_pred CCEEEE
Confidence 887643
No 158
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=87.88 E-value=4.1 Score=29.47 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=41.7
Q ss_pred CCCCCeEEEEEC--CCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHH
Q 032797 21 KNNKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 21 ~~~~~~i~vid~--~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.....+|.++-. .+.|... +.+.+++.|+++.+...+. +.+ .+...++||+|+.+.. +....
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~--~~~~~-- 79 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQN-SRISEREQILEFVHLKVDAIFITTLD--DVYIG-- 79 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHHHHHTTCSEEEEECSC--TTTTH--
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCC--hHHHH--
Confidence 344567777633 2233322 4556777899999887642 221 2223589999997642 12221
Q ss_pred HHHHHHh-CCCCCEEEEe
Q 032797 88 LQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 88 ~~~i~~~-~~~~PvLGIC 104 (133)
+.++.+ +.++|+.-+.
T Consensus 80 -~~~~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 80 -SAIEEAKKAGIPVFAID 96 (293)
T ss_dssp -HHHHHHHHTTCCEEEES
T ss_pred -HHHHHHHHcCCCEEEec
Confidence 233333 4568887663
No 159
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=87.71 E-value=1.6 Score=34.71 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=48.9
Q ss_pred CCCeEEEEECCCC--c---hHHHHHHHHhCCCeEEEEeCC--C------C--------------CHHHHccCCCCEEEEC
Q 032797 23 NKNPIIVIDNYDS--F---TYNLCQYMGELGYHFEVYRND--E------L--------------TVEELKRKNPRGVLIS 75 (133)
Q Consensus 23 ~~~~i~vid~~~~--~---~~~i~~~l~~~G~~~~v~~~~--~------~--------------~~~~l~~~~~DgvIl~ 75 (133)
...+|+||--... . ...+.++|.+.|+++.+-+.. . . +.+++ ...+|.+|..
T Consensus 37 ~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlvI~l 115 (365)
T 3pfn_A 37 SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI-SNQIDFIICL 115 (365)
T ss_dssp CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC-TTTCSEEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc-ccCCCEEEEE
Confidence 3457888854322 2 245788899999887654210 0 0 00111 1368999999
Q ss_pred CCCCCcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797 76 PGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 76 GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
||-| .++...+.+ ..++|++||=.|.
T Consensus 116 GGDG------T~L~aa~~~~~~~~PvlGiN~G~ 142 (365)
T 3pfn_A 116 GGDG------TLLYASSLFQGSVPPVMAFHLGS 142 (365)
T ss_dssp SSTT------HHHHHHHHCSSSCCCEEEEESSS
T ss_pred cChH------HHHHHHHHhccCCCCEEEEcCCC
Confidence 9854 355666665 5689999999885
No 160
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=87.41 E-value=4.3 Score=28.16 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=42.7
Q ss_pred CeEEEEECCCCchHHHHHH----HHhCCCeEEEEeCCCC--------------------CHHHHccCCCCEEEECCCCCC
Q 032797 25 NPIIVIDNYDSFTYNLCQY----MGELGYHFEVYRNDEL--------------------TVEELKRKNPRGVLISPGPGA 80 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~----l~~~G~~~~v~~~~~~--------------------~~~~l~~~~~DgvIl~GG~~~ 80 (133)
|+|++|..-.+++..+.+. +++.|.+++++...+. ..+++. .+|+||+ |.|--
T Consensus 5 mkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~ii~-gsP~y 81 (199)
T 2zki_A 5 PNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMR--WADGFAI-GSPTR 81 (199)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHH--HCSEEEE-EEECB
T ss_pred cEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHH--hCCEEEE-ECCcc
Confidence 6888885434555555444 4556889888865432 133343 6999999 55431
Q ss_pred cCC-chHHHHHHHHh--------CCCCCEEEEe
Q 032797 81 PQD-SGISLQTVLEL--------GPTVPLFGVC 104 (133)
Q Consensus 81 ~~d-~~~~~~~i~~~--------~~~~PvLGIC 104 (133)
-.. ...+..++.++ -.++|+..++
T Consensus 82 ~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~ 114 (199)
T 2zki_A 82 YGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFT 114 (199)
T ss_dssp TTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEE
T ss_pred ccCccHHHHHHHHHhhhcccccccCCCEEEEEE
Confidence 111 22334444432 2567876555
No 161
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=87.37 E-value=0.92 Score=29.27 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=41.4
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~ 98 (133)
..+++|+|+|....+...+.+.|+.. ++.+...-.+... .+.+....+|.+|+--. -+...+ ...+.+++.....
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~ 84 (143)
T 2qv0_A 7 GEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDIN--IPSLDGVLLAQNISQFAHKP 84 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSS--CSSSCHHHHHHHHTTSTTCC
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecC--CCCCCHHHHHHHHHccCCCc
Confidence 45678999987655566677788775 6664322221001 12233347998888322 122222 2334444433445
Q ss_pred CEEEEec
Q 032797 99 PLFGVCM 105 (133)
Q Consensus 99 PvLGICl 105 (133)
|++-+.-
T Consensus 85 ~ii~~s~ 91 (143)
T 2qv0_A 85 FIVFITA 91 (143)
T ss_dssp EEEEEES
T ss_pred eEEEEeC
Confidence 6766653
No 162
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=87.34 E-value=6.2 Score=29.36 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=46.2
Q ss_pred HHHHHHhCCCeEEEEeCCCC----CHHHHccCCCCEEEECCC-CCCcCCchHHHHHHHH-hCCCCCEEEEechH--HHHH
Q 032797 40 LCQYMGELGYHFEVYRNDEL----TVEELKRKNPRGVLISPG-PGAPQDSGISLQTVLE-LGPTVPLFGVCMGL--QCIG 111 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~----~~~~l~~~~~DgvIl~GG-~~~~~d~~~~~~~i~~-~~~~~PvLGIClG~--QlLa 111 (133)
+.+.|++.|+++++...++. +.+.+. +||.||+.|. .+...+.. ..+.+++ +.++..++||=.|+ +-..
T Consensus 37 i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~--~~DvvV~~~~~~~~~l~~~-~~~al~~~V~~GgG~vgiH~a~~~~~y~ 113 (252)
T 1t0b_A 37 IASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDEVKDE-VVERVHRRVLEGMGLIVLHSGHFSKIFK 113 (252)
T ss_dssp HHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGGSCHH-HHHHHHHHHHTTCEEEEEGGGGGSHHHH
T ss_pred HHHHHhhCCcEEEEEeccCccccCCHhHHh--cCCEEEEecCCCCCcCCHH-HHHHHHHHHHcCCCEEEEcccCCcHHHH
Confidence 46778889999988653221 223343 8999998432 11222222 3344554 57889999995443 4566
Q ss_pred HHhCCee
Q 032797 112 EAFGDCA 118 (133)
Q Consensus 112 ~a~GG~v 118 (133)
..+||.-
T Consensus 114 ~llGg~f 120 (252)
T 1t0b_A 114 KLMGTTC 120 (252)
T ss_dssp HHHCSCC
T ss_pred hhhCCcc
Confidence 7788863
No 163
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=87.24 E-value=1.3 Score=32.12 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=44.5
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
..++|+|+|........+...|+..|+.+..........+.+....+|.+|+-=. -|...+ .+.+.+++ ....|++
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~--lp~~~G~~l~~~lr~-~~~~~iI 112 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLG--LPDFDGGDVVQRLRK-NSALPII 112 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECC--SCHHHHHHHHHHHHT-TCCCCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHc-CCCCCEE
Confidence 3468999987555566677888888886654432100112233357998888211 111111 22344444 4568998
Q ss_pred EEec
Q 032797 102 GVCM 105 (133)
Q Consensus 102 GICl 105 (133)
-+.-
T Consensus 113 ~lt~ 116 (249)
T 3q9s_A 113 VLTA 116 (249)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8764
No 164
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=87.21 E-value=2.7 Score=29.64 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=21.7
Q ss_pred CCeEEEEEC-CCCchHHHHH----HHHhCCCeEEEEeCC
Q 032797 24 KNPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRND 57 (133)
Q Consensus 24 ~~~i~vid~-~~~~~~~i~~----~l~~~G~~~~v~~~~ 57 (133)
.++|++|.. ..+++..+.+ .+++.|.+++++...
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 468888853 2345555444 455578999888754
No 165
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=87.02 E-value=0.31 Score=32.07 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=43.8
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh----CC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL----GP 96 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~----~~ 96 (133)
...++|+|+|........+.+.|++.|+.+..........+.+....+|.+++-=. -|...+ ...+.+++. ..
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhchhccCC
Confidence 45579999986544555677888888987765432100112233357998887211 122222 345556542 24
Q ss_pred CCCEEEEec
Q 032797 97 TVPLFGVCM 105 (133)
Q Consensus 97 ~~PvLGICl 105 (133)
..|++-+.-
T Consensus 90 ~~pii~~s~ 98 (143)
T 3m6m_D 90 YTPVVVLSA 98 (143)
T ss_dssp CCCEEEEES
T ss_pred CCeEEEEeC
Confidence 578888764
No 166
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=86.77 E-value=7.1 Score=28.12 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=42.8
Q ss_pred CeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHH
Q 032797 25 NPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (133)
Q Consensus 25 ~~i~vi--d~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i 91 (133)
.+|.++ +..+.|.. .+.+.+++.|+.+.+..... +.+ .+...++||+|+.+......+.. .+.+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~--~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNN-NPDNERRGLENLLSQHIDGLIVEPTKSALQTPN--IGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTT--HHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHHCCCCEEEEecccccccCCc--HHHH
Confidence 577776 33333433 35566777899998887542 221 12235899999987532211111 1233
Q ss_pred HHh-CCCCCEEEEe
Q 032797 92 LEL-GPTVPLFGVC 104 (133)
Q Consensus 92 ~~~-~~~~PvLGIC 104 (133)
+.+ +.++|+.-+.
T Consensus 93 ~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 93 LNLEKNGIPFAMIN 106 (298)
T ss_dssp HHHHHTTCCEEEES
T ss_pred HHHHhcCCCEEEEe
Confidence 332 4568877664
No 167
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=86.74 E-value=5.6 Score=27.45 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=42.2
Q ss_pred CeEEEEEC-CCCchHHHHH----HHHhCCCeEEEEeCCC-------------------CCHHHHccCCCCEEEECCCCCC
Q 032797 25 NPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGPGA 80 (133)
Q Consensus 25 ~~i~vid~-~~~~~~~i~~----~l~~~G~~~~v~~~~~-------------------~~~~~l~~~~~DgvIl~GG~~~ 80 (133)
++|+||-. ..+++..+.+ .+++.|.+++++...+ ...+++. ++|+||+ |.|--
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~-gsP~y 82 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GSPTR 82 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EEECB
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHH--HCCEEEE-EcChh
Confidence 47888743 2345555444 4555788888876543 1133443 7999999 55431
Q ss_pred cCC-chHHHHHHHHh--------CCCCCEEEEe
Q 032797 81 PQD-SGISLQTVLEL--------GPTVPLFGVC 104 (133)
Q Consensus 81 ~~d-~~~~~~~i~~~--------~~~~PvLGIC 104 (133)
-.. ...+..++.++ -.++|+.-++
T Consensus 83 ~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~ 115 (200)
T 2a5l_A 83 FGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFT 115 (200)
T ss_dssp TTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEE
T ss_pred ccCccHHHHHHHHHHHHHhhccccCCCEEEEEE
Confidence 111 22344444432 2567776554
No 168
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=86.24 E-value=1.2 Score=31.59 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=37.7
Q ss_pred CCCCCeEEEEECC--------------CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH-------ccC-CCCEEEECC
Q 032797 21 KNNKNPIIVIDNY--------------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL-------KRK-NPRGVLISP 76 (133)
Q Consensus 21 ~~~~~~i~vid~~--------------~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l-------~~~-~~DgvIl~G 76 (133)
....+|+.||--+ |++...+.+.|++.|+++.... .| +.+.+ ... ++|.||.+|
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPD--DKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred CCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3556788888433 2334457888999999876432 23 22222 111 399999999
Q ss_pred CCC-CcCCc
Q 032797 77 GPG-APQDS 84 (133)
Q Consensus 77 G~~-~~~d~ 84 (133)
|.+ .+.|.
T Consensus 90 G~s~g~~D~ 98 (178)
T 2pjk_A 90 GTGYSPTDI 98 (178)
T ss_dssp CCSSSTTCC
T ss_pred CCCCCCCcc
Confidence 976 34443
No 169
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=86.14 E-value=0.53 Score=29.96 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=51.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~P 99 (133)
+++|+|+|........+.+.|+..+..+..... .++. ....+|.+|+--. -|...+ ...+.+++.....|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~----~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~ 76 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQH----PRAFLTLSLNKQDIIILDLM--MPDMDGIEVIRHLAEHKSPAS 76 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESC----HHHHTTSCCCTTEEEEEECC--TTTTHHHHHHHHHHHTTCCCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecC----HHHHHHhhccCCCEEEEeCC--CCCCCHHHHHHHHHhCCCCCC
Confidence 578999987555566677888877766655432 2222 1123898887322 111122 23455665556788
Q ss_pred EEEEechH-------HHHHHHhCCe
Q 032797 100 LFGVCMGL-------QCIGEAFGDC 117 (133)
Q Consensus 100 vLGIClG~-------QlLa~a~GG~ 117 (133)
++-+.--. +.+..+++..
T Consensus 77 ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 77 LILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp EEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred EEEEEeccchhHHHHHHHHHHcCCC
Confidence 88776432 4555566654
No 170
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=86.12 E-value=1 Score=31.73 Aligned_cols=76 Identities=9% Similarity=0.042 Sum_probs=44.4
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
|+|+|+|........+...|+..|+.+..........+.+....+|.+| .++ .+.-...+.+++...+.|++-+.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-lp~----~~g~~~~~~lr~~~~~~~ii~lt 75 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEKHSSIVVLVSS 75 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE-ECC----TTHHHHHHHHHHHCTTSEEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE-eCC----CCHHHHHHHHHhCCCCCcEEEEE
Confidence 5799998755556667888888888876443210011223334799888 222 11123445555552278998886
Q ss_pred c
Q 032797 105 M 105 (133)
Q Consensus 105 l 105 (133)
-
T Consensus 76 ~ 76 (223)
T 2hqr_A 76 D 76 (223)
T ss_dssp S
T ss_pred C
Confidence 4
No 171
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=86.03 E-value=1.7 Score=26.76 Aligned_cols=78 Identities=17% Similarity=0.288 Sum_probs=44.2
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
.+|+++|........+...|+..|+++............+....+|.+++--. .|...+ ...+.+++. ...|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~-~~~~ii~~ 78 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLM--LPEIDGLEVAKTIRKT-SSVPILML 78 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCCEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEecc--CCCCCHHHHHHHHHhC-CCCCEEEE
Confidence 47899987555556677888888987764432100112222336898887322 122222 334555543 56899887
Q ss_pred ec
Q 032797 104 CM 105 (133)
Q Consensus 104 Cl 105 (133)
.-
T Consensus 79 s~ 80 (120)
T 2a9o_A 79 SA 80 (120)
T ss_dssp ES
T ss_pred ec
Confidence 64
No 172
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=85.96 E-value=0.97 Score=29.12 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-CchHHHHHHHHhC--CCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELG--PTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-d~~~~~~~i~~~~--~~~Pv 100 (133)
.++|+|+|........+.+.|++. +.+..........+.+....+|.+|+--. -+. +.-.+.+.+++.. .+.|+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMD--IIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETT--C------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHcCcccCCCCE
Confidence 468999987555556677778776 65554332100112223347998888321 111 1122445566543 68899
Q ss_pred EEEech
Q 032797 101 FGVCMG 106 (133)
Q Consensus 101 LGIClG 106 (133)
+-+.--
T Consensus 80 i~~s~~ 85 (140)
T 3n53_A 80 ILLFSS 85 (140)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 887654
No 173
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=85.91 E-value=2.3 Score=31.41 Aligned_cols=73 Identities=14% Similarity=-0.032 Sum_probs=41.0
Q ss_pred CeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHH
Q 032797 25 NPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (133)
Q Consensus 25 ~~i~vid--~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i 91 (133)
.+|.++- ..+.|.. .+.+.+++.|+.+.+.... .+.+ .+...++||||+.+.. +.... +.+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~---~~~ 76 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSAN-GNEETQMSQIENMINRGVDVLVIIPYN--GQVLS---NVV 76 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSS--TTSCH---HHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC--hhhhH---HHH
Confidence 4566662 2334433 3556677889999888664 2221 2223589999997742 11212 234
Q ss_pred HHh-CCCCCEEEE
Q 032797 92 LEL-GPTVPLFGV 103 (133)
Q Consensus 92 ~~~-~~~~PvLGI 103 (133)
+.+ +.++|+.-+
T Consensus 77 ~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 77 KEAKQEGIKVLAY 89 (313)
T ss_dssp HHHHTTTCEEEEE
T ss_pred HHHHHCCCeEEEE
Confidence 443 556777654
No 174
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=85.89 E-value=3.1 Score=28.87 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=33.7
Q ss_pred CCCCCeEEEEEC---------CCCchHHHHHHHHhC-----CCeEEEEe--CCCCCHHH----Hc---c-CCCCEEEECC
Q 032797 21 KNNKNPIIVIDN---------YDSFTYNLCQYMGEL-----GYHFEVYR--NDELTVEE----LK---R-KNPRGVLISP 76 (133)
Q Consensus 21 ~~~~~~i~vid~---------~~~~~~~i~~~l~~~-----G~~~~v~~--~~~~~~~~----l~---~-~~~DgvIl~G 76 (133)
+...+|+.||-- .|++...+.+.+++. |+++..+. .| +.+. +. . .++|.||.+|
T Consensus 2 ~~~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittG 79 (167)
T 1uuy_A 2 PGPEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPD--EVERIKDILQKWSDVDEMDLILTLG 79 (167)
T ss_dssp -CCSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred CCCCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECC
Confidence 345567877743 234445567888877 88765332 22 2222 21 1 3699999999
Q ss_pred CCC
Q 032797 77 GPG 79 (133)
Q Consensus 77 G~~ 79 (133)
|.+
T Consensus 80 G~g 82 (167)
T 1uuy_A 80 GTG 82 (167)
T ss_dssp CCS
T ss_pred CCC
Confidence 975
No 175
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=85.77 E-value=0.89 Score=32.89 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=35.0
Q ss_pred CCeEEEEEC---------CCCchHHHHHHHHhCCCe--E---EEEeCCCCCH-HHH---cc-CCCCEEEECCCCC-CcCC
Q 032797 24 KNPIIVIDN---------YDSFTYNLCQYMGELGYH--F---EVYRNDELTV-EEL---KR-KNPRGVLISPGPG-APQD 83 (133)
Q Consensus 24 ~~~i~vid~---------~~~~~~~i~~~l~~~G~~--~---~v~~~~~~~~-~~l---~~-~~~DgvIl~GG~~-~~~d 83 (133)
.+|+.||-- +|++...+.+.|++.|++ + .+++.+.... +.+ .. .++|.||.+||-+ ++.|
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~~D 82 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRD 82 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTC
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCc
Confidence 356666622 355566788899998876 2 2344321111 112 11 2699999999976 4445
Q ss_pred c
Q 032797 84 S 84 (133)
Q Consensus 84 ~ 84 (133)
.
T Consensus 83 ~ 83 (195)
T 1di6_A 83 V 83 (195)
T ss_dssp C
T ss_pred c
Confidence 4
No 176
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=85.72 E-value=7.1 Score=28.11 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=42.7
Q ss_pred CCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 23 ~~~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
...+|.++-. .+.|.. .+.+.+++.|+++.+..... +.+ .+...++||||+.+.. .....+
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~-----~~~~~~ 77 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGR-NDQTQVSQIQTLIAQKPDAIIEQLGN-----LDVLNP 77 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHHCCSEEEEESSC-----HHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCC-CHHHHHHHHHHHHHcCCCEEEEeCCC-----hhhhHH
Confidence 3456776633 223322 35566777899998886542 221 1223489999997642 122223
Q ss_pred HHHHh-CCCCCEEEEe
Q 032797 90 TVLEL-GPTVPLFGVC 104 (133)
Q Consensus 90 ~i~~~-~~~~PvLGIC 104 (133)
.++.+ +.++|+.-+-
T Consensus 78 ~~~~~~~~~iPvV~~~ 93 (291)
T 3l49_A 78 WLQKINDAGIPLFTVD 93 (291)
T ss_dssp HHHHHHHTTCCEEEES
T ss_pred HHHHHHHCCCcEEEec
Confidence 44443 4578877653
No 177
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=85.68 E-value=5 Score=30.42 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=47.2
Q ss_pred CCCeEEEEECCCC--ch---HHHHHHHHhCC-CeEEEEeCCC-----CCH-HHHccCCCCEEEECCCCCCcCCchHHHHH
Q 032797 23 NKNPIIVIDNYDS--FT---YNLCQYMGELG-YHFEVYRNDE-----LTV-EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (133)
Q Consensus 23 ~~~~i~vid~~~~--~~---~~i~~~l~~~G-~~~~v~~~~~-----~~~-~~l~~~~~DgvIl~GG~~~~~d~~~~~~~ 90 (133)
...|||||.-... +. ..+.+.|++.| +++++..... ... +.+ .+||.||+.- .++..... ..+.
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L--~~~D~vV~~~-~~~~l~~~-~~~~ 78 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDF--SPYQLVVLDY-NGDSWPEE-TNRR 78 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCC--TTCSEEEECC-CSSCCCHH-HHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhh--hcCCEEEEeC-CCCcCCHH-HHHH
Confidence 3578999954222 22 24667777788 8888875320 001 123 3799999744 23322223 3344
Q ss_pred HHH-hCCCCCEEEEechH
Q 032797 91 VLE-LGPTVPLFGVCMGL 107 (133)
Q Consensus 91 i~~-~~~~~PvLGIClG~ 107 (133)
+.+ ++++.+++|+.-+.
T Consensus 79 l~~yV~~Ggglv~~H~a~ 96 (281)
T 4e5v_A 79 FLEYVQNGGGVVIYHAAD 96 (281)
T ss_dssp HHHHHHTTCEEEEEGGGG
T ss_pred HHHHHHcCCCEEEEeccc
Confidence 444 57789999998654
No 178
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=85.36 E-value=3.7 Score=30.26 Aligned_cols=52 Identities=21% Similarity=0.118 Sum_probs=34.3
Q ss_pred CCeEEEEECCCCc--------hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEEC
Q 032797 24 KNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (133)
Q Consensus 24 ~~~i~vid~~~~~--------~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~ 75 (133)
+++|+|+..+.+. ...+.+++++.|+++.++..++.....+...++|.++..
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~ 61 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEEC
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEc
Confidence 4789999765542 235778899999999888765333333333468887754
No 179
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=85.18 E-value=5.3 Score=27.74 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=44.7
Q ss_pred CCeEEEEECC---CCchHHHHHHHHh---CCCeEEEEeCCCCCH-----------HH---Hc--cCCCCEEEECCCCCCc
Q 032797 24 KNPIIVIDNY---DSFTYNLCQYMGE---LGYHFEVYRNDELTV-----------EE---LK--RKNPRGVLISPGPGAP 81 (133)
Q Consensus 24 ~~~i~vid~~---~~~~~~i~~~l~~---~G~~~~v~~~~~~~~-----------~~---l~--~~~~DgvIl~GG~~~~ 81 (133)
.|+|++|..- .+++..+.+.+.+ .|.+++++...+.+. ++ +. -..+|+||+ +.|---
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~-~sP~y~ 84 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLF-ATPEYN 84 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEE-ECCEET
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEE-Eccccc
Confidence 4689888643 3677777777654 377887765432110 11 11 126899999 544311
Q ss_pred C-CchHHHHHHHHh-------CCCCCEEEEec
Q 032797 82 Q-DSGISLQTVLEL-------GPTVPLFGVCM 105 (133)
Q Consensus 82 ~-d~~~~~~~i~~~-------~~~~PvLGICl 105 (133)
. -...+..+|.++ -.++|+.-|+-
T Consensus 85 ~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t 116 (193)
T 1rtt_A 85 YSMAGVLKNAIDWASRPPEQPFSGKPAAILGA 116 (193)
T ss_dssp TEECHHHHHHHHHHTCSSSCTTTTCEEEEEEE
T ss_pred cCcCHHHHHHHHHhccccCcccCCCeEEEEEe
Confidence 1 123344555543 24788877764
No 180
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=85.14 E-value=0.51 Score=29.74 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=44.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhC--CCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELG--PTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~--~~~Pv 100 (133)
.++|+|+|........+...|+..|+.+..........+.+....+|.+++-=. -|...+ ...+.+++.. ...|+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWM--LPGGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESE--ETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhCcccCCCCE
Confidence 368999987555566677888888987654432100011122336898877211 111122 2344555432 57899
Q ss_pred EEEech
Q 032797 101 FGVCMG 106 (133)
Q Consensus 101 LGIClG 106 (133)
+-+.--
T Consensus 80 i~~s~~ 85 (127)
T 2jba_A 80 VMLTAR 85 (127)
T ss_dssp EEEEET
T ss_pred EEEeCC
Confidence 887643
No 181
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=85.03 E-value=2.7 Score=30.08 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=36.6
Q ss_pred CCCCeEEEEEC---------CCCchHHHHHHHHh---CCCeEEEEe--CCCCCHHHH----c---c-CCCCEEEECCCCC
Q 032797 22 NNKNPIIVIDN---------YDSFTYNLCQYMGE---LGYHFEVYR--NDELTVEEL----K---R-KNPRGVLISPGPG 79 (133)
Q Consensus 22 ~~~~~i~vid~---------~~~~~~~i~~~l~~---~G~~~~v~~--~~~~~~~~l----~---~-~~~DgvIl~GG~~ 79 (133)
...+++.||-- .|++...+.+.|++ .|+++.... .| +.+.+ . . .++|.||.+||-+
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVIttGGtg 89 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPD--EIEEIKETLIDWCDEKELNLILTTGGTG 89 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCC--CHHHHHHHHHHHhhcCCCCEEEEcCCCC
Confidence 34568887733 34445568888988 788775332 23 22222 1 1 2699999999976
Q ss_pred -CcCCc
Q 032797 80 -APQDS 84 (133)
Q Consensus 80 -~~~d~ 84 (133)
++.|.
T Consensus 90 ~g~~D~ 95 (189)
T 1jlj_A 90 FAPRDV 95 (189)
T ss_dssp SSTTCC
T ss_pred CCCccc
Confidence 44444
No 182
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=84.52 E-value=2 Score=30.18 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=46.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
.++|+|+|........+...|+..|+++..........+.+....+|.+|+--. .|...+ ...+.+++. ...|++-
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~-~~~~ii~ 80 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLM--LPGMSGTDVCKQLRAR-SSVPVIM 80 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHH-CSCSEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECC--CCCCCHHHHHHHHHcC-CCCCEEE
Confidence 468999987555566788888888988664432100112222336998887322 122222 334555553 4689888
Q ss_pred Eech
Q 032797 103 VCMG 106 (133)
Q Consensus 103 IClG 106 (133)
+.--
T Consensus 81 lt~~ 84 (230)
T 2oqr_A 81 VTAR 84 (230)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7643
No 183
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=84.36 E-value=0.59 Score=30.28 Aligned_cols=80 Identities=6% Similarity=0.137 Sum_probs=45.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh-----CCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL-----GPT 97 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~-----~~~ 97 (133)
.++|+|+|........+...|+..|+.+..........+.+....+|.+|+-=. -|...+ .+.+.+++. ...
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~--lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQ--MPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTT--CCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHhhhhhcCCCc
Confidence 468999987555556677788888887766532111112233347998887321 122222 334555542 246
Q ss_pred CCEEEEec
Q 032797 98 VPLFGVCM 105 (133)
Q Consensus 98 ~PvLGICl 105 (133)
.|++.+.-
T Consensus 88 ~~ii~~s~ 95 (140)
T 3c97_A 88 ASIIAITA 95 (140)
T ss_dssp CCCEEEES
T ss_pred eEEEEEeC
Confidence 78887753
No 184
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=84.25 E-value=6.3 Score=25.34 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=41.7
Q ss_pred EEEE-ECCCCchHHHHHH----HHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC-CcCCchH--HHHHHHHh---C
Q 032797 27 IIVI-DNYDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSGI--SLQTVLEL---G 95 (133)
Q Consensus 27 i~vi-d~~~~~~~~i~~~----l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-~~~d~~~--~~~~i~~~---~ 95 (133)
|+|+ ....+.+..+.+. +++.|.++++++..+.+.+++. ++|.+|+ |.|- .-..... +..++.++ -
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vi~-g~p~y~~~~~~~~~~~~fl~~l~~~l 78 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVA--SKDVILL-GCPAMGSEELEDSVVEPFFTDLAPKL 78 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEE-ECCCBTTTBCCHHHHHHHHHHHGGGC
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHh--cCCEEEE-EccccCCCCCCHHHHHHHHHHhhhhc
Confidence 4444 3333555555544 5557889988887655566664 7999998 4442 1112233 55566553 2
Q ss_pred CCCCEEEE
Q 032797 96 PTVPLFGV 103 (133)
Q Consensus 96 ~~~PvLGI 103 (133)
.++|+.-+
T Consensus 79 ~~k~~~~~ 86 (137)
T 2fz5_A 79 KGKKVGLF 86 (137)
T ss_dssp SSCEEEEE
T ss_pred CCCEEEEE
Confidence 56776543
No 185
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=83.43 E-value=3.5 Score=28.21 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=33.2
Q ss_pred CCeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCC-CHHHHcc--CCCCEEEECCCC
Q 032797 24 KNPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDEL-TVEELKR--KNPRGVLISPGP 78 (133)
Q Consensus 24 ~~~i~vi-d~~~~~~~~i~----~~l~~~G~~~~v~~~~~~-~~~~l~~--~~~DgvIl~GG~ 78 (133)
..+|+|+ ....+.+..+. +.+++.|+++++++.... +..++.. .++|+||+ |.|
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp 65 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVI-GMS 65 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEE-ECC
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEE-EcC
Confidence 3467666 33334565544 445667999988887644 5544421 36999999 544
No 186
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=83.33 E-value=3.5 Score=35.45 Aligned_cols=82 Identities=9% Similarity=0.007 Sum_probs=49.2
Q ss_pred CeEEEEECCC-Cc-------hHHHHHHHHhCCCeEEEEeCCCCCHHHHccC-CCCEEEECCCCCCcC----Cch-HHHHH
Q 032797 25 NPIIVIDNYD-SF-------TYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQ----DSG-ISLQT 90 (133)
Q Consensus 25 ~~i~vid~~~-~~-------~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~-~~DgvIl~GG~~~~~----d~~-~~~~~ 90 (133)
|+|+|||... .. ...+...|++.|+++......+.-...+... ++|.||+.=. .|. ..+ ++.+.
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~--lp~~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK 78 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECC--CCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCcccccccHHHHHHH
Confidence 5899997654 44 4567888999999887654321111223333 4999999432 232 111 24556
Q ss_pred HHHhCCCCCEEEEechHH
Q 032797 91 VLELGPTVPLFGVCMGLQ 108 (133)
Q Consensus 91 i~~~~~~~PvLGIClG~Q 108 (133)
||+...++||+-+.-=.+
T Consensus 79 iR~~~~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_dssp HHHHSTTCCEEEEECHHH
T ss_pred HHHhCCCCCEEEEecCCc
Confidence 666556799998875444
No 187
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=83.16 E-value=5.9 Score=25.81 Aligned_cols=71 Identities=10% Similarity=-0.040 Sum_probs=39.8
Q ss_pred ECCCCchHHHHH----HHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC-CcCCch--HHHHHHHHh---CCCCCE
Q 032797 31 DNYDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSG--ISLQTVLEL---GPTVPL 100 (133)
Q Consensus 31 d~~~~~~~~i~~----~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-~~~d~~--~~~~~i~~~---~~~~Pv 100 (133)
....+.+..+.+ .+++.|.++++++..+.+.+++. ++|.+|+ |.|- .-.... .+.+++.++ -.++++
T Consensus 6 ~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~iii-g~pty~~g~~p~~~~~~fl~~l~~~l~~k~~ 82 (138)
T 5nul_A 6 WSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELL--NEDILIL-GCSAMTDEVLEESEFEPFIEEISTKISGKKV 82 (138)
T ss_dssp ECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHT--TCSEEEE-EECCBTTTBCCTTTHHHHHHHHGGGCTTCEE
T ss_pred ECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHh--hCCEEEE-EcCccCCCCCChHHHHHHHHHHHhhcCCCEE
Confidence 333455655544 45667888888876545566664 7999998 4442 111111 344455543 256676
Q ss_pred EEEe
Q 032797 101 FGVC 104 (133)
Q Consensus 101 LGIC 104 (133)
.-++
T Consensus 83 ~~f~ 86 (138)
T 5nul_A 83 ALFG 86 (138)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 188
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=83.10 E-value=2.6 Score=27.90 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=42.3
Q ss_pred CeEEEE-ECCCCchHHHHHH----HHhCCCeEEEEeCCCCCHHHHccCC-CCEEEECCCCCC-cCC---chHHHHHHHHh
Q 032797 25 NPIIVI-DNYDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGA-PQD---SGISLQTVLEL 94 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~~----l~~~G~~~~v~~~~~~~~~~l~~~~-~DgvIl~GG~~~-~~d---~~~~~~~i~~~ 94 (133)
|+++|+ ....+.+..+.+. +++.|.++++++..+.+.+++. + +|.+|+ |.|-- -.. ...+..++..+
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~--~~~d~ii~-~~p~y~~g~~~~p~~~~~fl~~l 77 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLF--EGFDLVLL-GCSTWGDDSIELQDDFIPLFDSL 77 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTT--TTCSEEEE-EECEECSSSCEECTTTHHHHHTG
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhc--CcCCEEEE-EeCCCCCCCcCCChhHHHHHHHH
Confidence 466666 3333555555554 4556888888775433333343 6 999998 43321 112 12334455542
Q ss_pred ----CCCCCEEEEech
Q 032797 95 ----GPTVPLFGVCMG 106 (133)
Q Consensus 95 ----~~~~PvLGIClG 106 (133)
-.++++.-+|.|
T Consensus 78 ~~~~l~~k~~~v~~~g 93 (147)
T 1f4p_A 78 EETGAQGRKVACFGCG 93 (147)
T ss_dssp GGSCCTTCEEEEEEEE
T ss_pred HhcccCCCEEEEEeec
Confidence 246777766654
No 189
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=83.00 E-value=1.5 Score=34.06 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=45.8
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
.+++|+|+|........+.+.|++.|+++..........+.+....+|.||+== .-|...+ ...+.+++...++|++
T Consensus 4 ~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvllD~--~mp~~~G~~~~~~lr~~~~~~pii 81 (394)
T 3eq2_A 4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICDL--RMPQIDGLELIRRIRQTASETPII 81 (394)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEECC--CSSSSCTHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCCCCEEEEcC--CCCCCCHHHHHHHHHhhCCCCcEE
Confidence 457899998755556667888988888764321110011223335799888711 1222222 3456666655678988
Q ss_pred EEe
Q 032797 102 GVC 104 (133)
Q Consensus 102 GIC 104 (133)
-+-
T Consensus 82 ~lt 84 (394)
T 3eq2_A 82 VLS 84 (394)
T ss_dssp EC-
T ss_pred EEE
Confidence 664
No 190
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=82.99 E-value=5.7 Score=28.65 Aligned_cols=57 Identities=9% Similarity=0.200 Sum_probs=32.9
Q ss_pred CCCCCeEEEEEC-------CCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCC
Q 032797 21 KNNKNPIIVIDN-------YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGP 78 (133)
Q Consensus 21 ~~~~~~i~vid~-------~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~ 78 (133)
.....+|.++-. .+.|... +.+.+++.|+.+.+...+. +.+ .+...++||+|+.+..
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGET-EEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCS-HHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 344567777732 3344333 4556677899988765432 111 1223589999997753
No 191
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=82.83 E-value=3.5 Score=26.00 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHcc-CCCCEEEECCCCCCcCCch-HHHHHHHHh--CCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT 97 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~-~~v~~~~~~~~~~l~~-~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~ 97 (133)
..++|+|+|........+.+.|++.|+. +..........+.+.. ..+|.+++-= .-|...+ ...+.+++. ...
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~--~~p~~~g~~~~~~lr~~~~~~~ 81 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDW--NMPEMNGLDLVKKVRSDSRFKE 81 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECS--CCSSSCHHHHHHHHHTSTTCTT
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeC--CCCCCCHHHHHHHHHhcCCCCC
Confidence 4578999987555566678888888885 3332211001122222 2689877721 1222223 344555552 257
Q ss_pred CCEEEEec
Q 032797 98 VPLFGVCM 105 (133)
Q Consensus 98 ~PvLGICl 105 (133)
.|++-+.-
T Consensus 82 ~pii~~s~ 89 (129)
T 3h1g_A 82 IPIIMITA 89 (129)
T ss_dssp CCEEEEES
T ss_pred CeEEEEeC
Confidence 89998873
No 192
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=82.76 E-value=0.84 Score=29.55 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
.++|+|+|....+...+...|+..|+.+..........+.+....+|.+++-=. .|...+ .+.+.+++.. ..|++-
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~-~~~ii~ 80 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDGDGWTLCKKIRNVT-TCPIVY 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTEEHHHHHHHHHTTC-CCCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHccCC-CCCEEE
Confidence 568999987555566678888888887654432101112233347898887211 111122 2334444433 789887
Q ss_pred Ee
Q 032797 103 VC 104 (133)
Q Consensus 103 IC 104 (133)
+.
T Consensus 81 ls 82 (136)
T 2qzj_A 81 MT 82 (136)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 193
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=82.61 E-value=9.7 Score=27.63 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=39.8
Q ss_pred CCeEEEEE--CCCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHH
Q 032797 24 KNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQT 90 (133)
Q Consensus 24 ~~~i~vid--~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~ 90 (133)
+.+|.++- ..+.|... +.+.+++.|+.+.+......+.+ .+...++||||+.+... .... +.
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~~~---~~ 78 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDP--VELT---DT 78 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSST--TTTH---HH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCH--HHHH---HH
Confidence 45676663 23344333 45566778999987432222221 12234899999977431 1112 23
Q ss_pred HHHh-CCCCCEEEEe
Q 032797 91 VLEL-GPTVPLFGVC 104 (133)
Q Consensus 91 i~~~-~~~~PvLGIC 104 (133)
++++ +.++|+.-+-
T Consensus 79 ~~~~~~~~iPvV~~~ 93 (305)
T 3g1w_A 79 INKAVDAGIPIVLFD 93 (305)
T ss_dssp HHHHHHTTCCEEEES
T ss_pred HHHHHHCCCcEEEEC
Confidence 3332 4567876553
No 194
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=82.16 E-value=3.9 Score=30.72 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=34.8
Q ss_pred CCCCeEEEEECCCCch--------HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797 22 NNKNPIIVIDNYDSFT--------YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~--------~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl 74 (133)
.+.+||+||-.+.|-. ..+.++|++.|+++..+...+.....+....+|.++.
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~ 71 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFN 71 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEE
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEE
Confidence 3457899997655532 2467889999999988875322233443347898775
No 195
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=82.14 E-value=4.5 Score=29.47 Aligned_cols=77 Identities=12% Similarity=-0.034 Sum_probs=40.4
Q ss_pred CCCCeEEEEE--CCCCchHH----HHHHHHhCCCeEEEEeCCC-CCH--------HHHccCCCCEEEECCCCCCcCCchH
Q 032797 22 NNKNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDE-LTV--------EELKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 22 ~~~~~i~vid--~~~~~~~~----i~~~l~~~G~~~~v~~~~~-~~~--------~~l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
....+|.++- ..+.|... +.+.+++.|+.+.+...+. ... +.+...++||+|+.+...+ ..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~~ 81 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH----DE 81 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC----HH
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC----HH
Confidence 3445777773 22233322 4556777899988775432 111 1122358999999775321 22
Q ss_pred HHHHHHHhCCCCCEEEEe
Q 032797 87 SLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 87 ~~~~i~~~~~~~PvLGIC 104 (133)
..+.++ +.++|+.-+.
T Consensus 82 ~~~~l~--~~~iPvV~~~ 97 (290)
T 2rgy_A 82 DLDELH--RMHPKMVFLN 97 (290)
T ss_dssp HHHHHH--HHCSSEEEES
T ss_pred HHHHHh--hcCCCEEEEc
Confidence 223332 2457877664
No 196
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=82.00 E-value=0.99 Score=28.07 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=44.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (133)
.++|+++|........+.+.|+..|+.+............+....+|.+++--. .+...+ ...+.+++.....|++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIR--MPGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSC--SSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeee--cCCCCHHHHHHHHHhhCCCCCEEE
Confidence 457899987666677788888888887654332111112223346898877321 111111 23455555445677776
Q ss_pred Ee
Q 032797 103 VC 104 (133)
Q Consensus 103 IC 104 (133)
+.
T Consensus 81 ~s 82 (124)
T 1dc7_A 81 MT 82 (124)
T ss_dssp BC
T ss_pred Ee
Confidence 54
No 197
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=81.99 E-value=12 Score=28.21 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=53.7
Q ss_pred CCCCeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCCC-HHHHc---cCCCCEEEECCCCCCcCCchHHHHH
Q 032797 22 NNKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDELT-VEELK---RKNPRGVLISPGPGAPQDSGISLQT 90 (133)
Q Consensus 22 ~~~~~i~vid~~~~~-------~~~i~~~l~~~G~~~~v~~~~~~~-~~~l~---~~~~DgvIl~GG~~~~~d~~~~~~~ 90 (133)
...+|+++|-|..+- ...+.+.|++.|.++++....... ..++. ..++|.||+.||-| .+.+.
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDG------Tl~~v 79 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDG------TVFEC 79 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHH------HHHHH
T ss_pred CCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccch------HHHHH
Confidence 334678877664321 123566788889999887654221 11211 13799999999944 33444
Q ss_pred HHHh-C--CCCCEEEEechHH-HHHHHhCC
Q 032797 91 VLEL-G--PTVPLFGVCMGLQ-CIGEAFGD 116 (133)
Q Consensus 91 i~~~-~--~~~PvLGIClG~Q-lLa~a~GG 116 (133)
+..+ . .+.|+..|=.|-. -+|..+|-
T Consensus 80 ~~~l~~~~~~~~l~iiP~Gt~N~~ar~lg~ 109 (304)
T 3s40_A 80 TNGLAPLEIRPTLAIIPGGTCNDFSRTLGV 109 (304)
T ss_dssp HHHHTTCSSCCEEEEEECSSCCHHHHHTTC
T ss_pred HHHHhhCCCCCcEEEecCCcHHHHHHHcCC
Confidence 5543 3 5677777777765 56677664
No 198
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=81.77 E-value=5.1 Score=27.64 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=20.7
Q ss_pred CeEEEEEC-CCCchHHHH----HHHHh-CCCeEEEEeCC
Q 032797 25 NPIIVIDN-YDSFTYNLC----QYMGE-LGYHFEVYRND 57 (133)
Q Consensus 25 ~~i~vid~-~~~~~~~i~----~~l~~-~G~~~~v~~~~ 57 (133)
|+|++|.. ..+++..+. +.+++ .|++++++...
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 47877743 334555444 44566 78899888764
No 199
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=81.72 E-value=9 Score=25.34 Aligned_cols=33 Identities=9% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCCeEEEEE---CCCCchHHHHHHHHhCCCeEEEEe
Q 032797 23 NKNPIIVID---NYDSFTYNLCQYMGELGYHFEVYR 55 (133)
Q Consensus 23 ~~~~i~vid---~~~~~~~~i~~~l~~~G~~~~v~~ 55 (133)
.+..|+||. ..+.+.+.+.+.|.+.|+++..+.
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVn 38 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVG 38 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEES
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEEC
Confidence 345789993 334566778889998898655543
No 200
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=81.62 E-value=0.64 Score=29.43 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=42.3
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV 98 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~-~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~ 98 (133)
..++|+++|........+.+.|+..|+ .+..........+.+....+|.+++-=. -|...+ ...+.+++. ....
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFN--MPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSS--SCSSCHHHHHHHHTTCTTSTTC
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCC--CCCCCHHHHHHHHhcCccccCC
Confidence 456899998755555667788888887 3332211000112223346898877221 122222 233444442 2467
Q ss_pred CEEEEe
Q 032797 99 PLFGVC 104 (133)
Q Consensus 99 PvLGIC 104 (133)
|++-+.
T Consensus 83 ~ii~~s 88 (129)
T 1p6q_A 83 AFIILT 88 (129)
T ss_dssp EEEECC
T ss_pred CEEEEe
Confidence 887764
No 201
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=81.59 E-value=12 Score=27.56 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=48.1
Q ss_pred ccCCCCCeEEEEECC---CCchHHHHHH----HHhCCCeEEEEeCCCCC-----------HHHHcc--CCCCEEEECCCC
Q 032797 19 KSKNNKNPIIVIDNY---DSFTYNLCQY----MGELGYHFEVYRNDELT-----------VEELKR--KNPRGVLISPGP 78 (133)
Q Consensus 19 ~~~~~~~~i~vid~~---~~~~~~i~~~----l~~~G~~~~v~~~~~~~-----------~~~l~~--~~~DgvIl~GG~ 78 (133)
++....++|++|..- .+++..+.++ +++.|++++++...+.+ ..++.. ..+|+||+ +.|
T Consensus 29 ~~~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~-~sP 107 (247)
T 2q62_A 29 AFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW-VSP 107 (247)
T ss_dssp CCCCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE-EEE
T ss_pred hccCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE-EeC
Confidence 444556789988532 3566555544 45579999887653322 111111 26899999 444
Q ss_pred C-CcCCchHHHHHHHHh---------CCCCCEEEEec
Q 032797 79 G-APQDSGISLQTVLEL---------GPTVPLFGVCM 105 (133)
Q Consensus 79 ~-~~~d~~~~~~~i~~~---------~~~~PvLGICl 105 (133)
- +-.-...+..+|..+ -.+||+.-|+-
T Consensus 108 ~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~t 144 (247)
T 2q62_A 108 ERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQV 144 (247)
T ss_dssp CSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEE
T ss_pred CCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEe
Confidence 3 111233444555442 14788877765
No 202
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=81.26 E-value=3.6 Score=29.74 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=32.2
Q ss_pred CCCCCeEEEEE--CCCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 21 KNNKNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 21 ~~~~~~i~vid--~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
.....+|.++- ..+.|... +.+.+++.|+.+.+...+. +.+.....++||+|+.+.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~vdgiI~~~~ 66 (277)
T 3cs3_A 5 RRQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKK-SHLFIPEKMVDGAIILDW 66 (277)
T ss_dssp CCCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTT-TTTCCCTTTCSEEEEECT
T ss_pred ccCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCC-CHHHHhhccccEEEEecC
Confidence 34455777763 23344333 4556677899988876532 111111127999999775
No 203
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=81.12 E-value=4 Score=26.99 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=43.6
Q ss_pred CeEEEE-ECCCCchHHHHHH----HHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC-Cc--CC-chHHHHHHHHh-
Q 032797 25 NPIIVI-DNYDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-AP--QD-SGISLQTVLEL- 94 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~~----l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-~~--~d-~~~~~~~i~~~- 94 (133)
++|+|+ ....+.+..+.+. +++.|+++++++..+.+.+++.. ++|.+|+ |.|- .- .+ ......++..+
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~-~~d~ii~-g~pty~~~~G~~p~~~~~fl~~l~ 79 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLAD-GYDAVLF-GCSAWGMEDLEMQDDFLSLFEEFD 79 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTT-TCSEEEE-EECEECSSSCEECHHHHHHHTTGG
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcc-cCCEEEE-EecccCCCCCCCcHHHHHHHHHhh
Confidence 466666 3334556555544 55578899888875433344421 6899888 4432 11 01 12344555542
Q ss_pred ---CCCCCEEEEech
Q 032797 95 ---GPTVPLFGVCMG 106 (133)
Q Consensus 95 ---~~~~PvLGIClG 106 (133)
-.++++.-++.|
T Consensus 80 ~~~l~~k~~~vfg~G 94 (148)
T 3f6r_A 80 RIGLAGRKVAAFASG 94 (148)
T ss_dssp GTCCTTCEEEEEEEE
T ss_pred ccCCCCCEEEEEEeC
Confidence 246776666554
No 204
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=81.02 E-value=3.6 Score=28.35 Aligned_cols=80 Identities=14% Similarity=0.239 Sum_probs=44.8
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~-v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
++++|+|+|........+.+.|+..|+++. .........+.+....+|.+|+-=. -|...+ ...+.++... ..|+
T Consensus 12 m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~--~p~~~g~~~~~~l~~~~-~~pi 88 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRRDGIDAASEIASKR-IAPI 88 (205)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTT-CSCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCCCChHHHHHHHHhcC-CCCE
Confidence 346899998755556677888888898775 3322100111222346998887221 122222 3345555532 3488
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-+.-
T Consensus 89 i~lt~ 93 (205)
T 1s8n_A 89 VVLTA 93 (205)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 87764
No 205
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=80.96 E-value=14 Score=26.96 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=41.3
Q ss_pred CCCCeEEEE--ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 22 NNKNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 22 ~~~~~i~vi--d~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
....+|.++ +..+.|... +.+.+++.|+.+.+........ +.+...++||+|+.+...+ + ..
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~-~~--- 86 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDF--D-DD--- 86 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTC--C-HH---
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC--c-HH---
Confidence 344567666 333344333 5566777899998887542211 1233458999999875322 1 11
Q ss_pred HHHHh-CCCCCEEEEe
Q 032797 90 TVLEL-GPTVPLFGVC 104 (133)
Q Consensus 90 ~i~~~-~~~~PvLGIC 104 (133)
.+..+ + ++|+.-+-
T Consensus 87 ~~~~l~~-~iPvV~i~ 101 (303)
T 3kke_A 87 MLAAVLE-GVPAVTIN 101 (303)
T ss_dssp HHHHHHT-TSCEEEES
T ss_pred HHHHHhC-CCCEEEEC
Confidence 23332 4 78887664
No 206
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=80.95 E-value=9.3 Score=28.09 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=31.7
Q ss_pred CCeEEEE--ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797 24 KNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 24 ~~~i~vi--d~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG 77 (133)
+.+|.++ +..+.|... +.+.+++.|+++.+.... .+.+ .+...++||||+.+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYAD-DDIPNQLSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCC-CCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3466666 333344333 556677789999887654 2221 222348999999764
No 207
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=80.66 E-value=3.6 Score=28.85 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=44.3
Q ss_pred CeEEEEECC---CCchHHHHH----H-HHhCCCeEEEEeCCCCCH-----------------HHHccCCCCEEEECCCCC
Q 032797 25 NPIIVIDNY---DSFTYNLCQ----Y-MGELGYHFEVYRNDELTV-----------------EELKRKNPRGVLISPGPG 79 (133)
Q Consensus 25 ~~i~vid~~---~~~~~~i~~----~-l~~~G~~~~v~~~~~~~~-----------------~~l~~~~~DgvIl~GG~~ 79 (133)
|+|++|..- .+++..+.+ . +++.|.+++++...+.+. +++ ..+|+||+ |.|-
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i--~~aD~ii~-~sP~ 79 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDAT--CNADGLIV-ATPI 79 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHH--HHCSEEEE-EEEC
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHH--HHCCEEEE-EeCc
Confidence 578888543 366665554 4 555688888887543321 112 26899999 4443
Q ss_pred -CcCCchHHHHHHHHh----CCCCCEEEEec
Q 032797 80 -APQDSGISLQTVLEL----GPTVPLFGVCM 105 (133)
Q Consensus 80 -~~~d~~~~~~~i~~~----~~~~PvLGICl 105 (133)
+-.-...+..++..+ -.++|++-++-
T Consensus 80 y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 80 YKASYTGLLKAFLDILPQFALAGKAALPLAT 110 (197)
T ss_dssp BTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred cCCCCCHHHHHHHHhccccccCCCEEEEEEE
Confidence 111223344555543 24788887765
No 208
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=80.55 E-value=9 Score=27.73 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=37.2
Q ss_pred CCCCCeEEEE--ECCCCchHH----HHHHHHhCCCeEEEE-eCCC-CC-----HHHHccCCCCEEEECCCCCCcCCchHH
Q 032797 21 KNNKNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVY-RNDE-LT-----VEELKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 21 ~~~~~~i~vi--d~~~~~~~~----i~~~l~~~G~~~~v~-~~~~-~~-----~~~l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.....+|.++ +..+.|... +.+.+++.|+++.+. .... .. .+.+...++||+|+.+...+ ...
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~~~ 80 (290)
T 3clk_A 5 KKSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT----DDN 80 (290)
T ss_dssp ---CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC--------C
T ss_pred cccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC----HHH
Confidence 3444577777 333344333 455667789998876 4321 11 22333458999999764321 111
Q ss_pred HHHHHHhCCCCCEEEEe
Q 032797 88 LQTVLELGPTVPLFGVC 104 (133)
Q Consensus 88 ~~~i~~~~~~~PvLGIC 104 (133)
.+.++ +.++|++-+-
T Consensus 81 ~~~l~--~~~iPvV~~~ 95 (290)
T 3clk_A 81 LQLLQ--SSDVPYCFLS 95 (290)
T ss_dssp HHHHH--CC--CEEEES
T ss_pred HHHHH--hCCCCEEEEc
Confidence 22222 4578887664
No 209
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=80.36 E-value=6 Score=28.87 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=31.8
Q ss_pred CCeEEEEECC--CCchHH----HHHHHHhCCCeEEEEeCCCC-CH-------HHHccCCCCEEEECCC
Q 032797 24 KNPIIVIDNY--DSFTYN----LCQYMGELGYHFEVYRNDEL-TV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 24 ~~~i~vid~~--~~~~~~----i~~~l~~~G~~~~v~~~~~~-~~-------~~l~~~~~DgvIl~GG 77 (133)
..+|.++-.. +.|... +.+.+++.|+++.+...+.. +. +.+...++||||+.+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4567777332 233332 45566778999988764311 21 2233458999999764
No 210
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=80.24 E-value=0.96 Score=28.26 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=44.8
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF 101 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~PvL 101 (133)
.+|+++|........+.+.|+..|+++............+....+|.+++-=. .|...+ ...+.+++. ....|++
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHcCccccCCcEE
Confidence 47999987555566778888888987664422100011222336898887211 122222 344556553 2478998
Q ss_pred EEec
Q 032797 102 GVCM 105 (133)
Q Consensus 102 GICl 105 (133)
-+.-
T Consensus 80 ~~s~ 83 (124)
T 1mb3_A 80 AVTA 83 (124)
T ss_dssp EEC-
T ss_pred EEEC
Confidence 8764
No 211
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=80.18 E-value=7.5 Score=28.75 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=50.5
Q ss_pred CCeEEEEECCCC--chHHHHHHHHh---CCCeEEEEeCCC----C-CH-----------HHH---ccCCCCEEEECCCCC
Q 032797 24 KNPIIVIDNYDS--FTYNLCQYMGE---LGYHFEVYRNDE----L-TV-----------EEL---KRKNPRGVLISPGPG 79 (133)
Q Consensus 24 ~~~i~vid~~~~--~~~~i~~~l~~---~G~~~~v~~~~~----~-~~-----------~~l---~~~~~DgvIl~GG~~ 79 (133)
.|||+||+-..+ .+..+.+.++. .|.+++.+..+. . +. +.+ ...++|++|+.-...
T Consensus 1 ~mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~ 80 (245)
T 3qvl_A 1 SVRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGD 80 (245)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCC
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCh
Confidence 368999976554 34556666654 355665553321 0 11 111 124799999965422
Q ss_pred CcCCchHHHHHHHHhCCCCCEEEEechHHHHHHHhCCeee
Q 032797 80 APQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 80 ~~~d~~~~~~~i~~~~~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
+ .+ +.+++. -++||+||.--.-..+...|+++.
T Consensus 81 ~-----~l-~~lr~~-~~iPvigi~e~~~~~a~~~~~rig 113 (245)
T 3qvl_A 81 P-----GL-LAAREL-AQGPVIGIAEAAMHMATMVATRFS 113 (245)
T ss_dssp T-----TH-HHHHHH-CSSCEEEHHHHHHHHHHHHCSCEE
T ss_pred h-----HH-HHHHHH-cCCCEECccHHHHHHHHHcCCEEE
Confidence 1 12 556663 249999997655555556677665
No 212
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=80.14 E-value=0.22 Score=27.31 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=13.2
Q ss_pred EEEEechHHHHHHHhC
Q 032797 100 LFGVCMGLQCIGEAFG 115 (133)
Q Consensus 100 vLGIClG~QlLa~a~G 115 (133)
..|-|+|.|+|..+-|
T Consensus 32 tagacfgaqimvaakg 47 (48)
T 1ehs_A 32 TAGACFGAQIMVAAKG 47 (48)
T ss_dssp SCCTTTTTHHHHTTTT
T ss_pred ccccccchhHhhhccc
Confidence 4688999999987765
No 213
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=80.02 E-value=14 Score=26.55 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=42.4
Q ss_pred CCCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHH
Q 032797 21 KNNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 21 ~~~~~~i~vid--~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.....+|.++- ..+.|.. .+.+.+++.|+.+.+..... +.+ .+...++||+|+.+... ..
T Consensus 5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~----~~-- 77 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE-DIVREREAVGQFFERRVDGLILAPSEG----EH-- 77 (291)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCSS----CC--
T ss_pred cCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCC----Ch--
Confidence 34456777763 2223332 35556777899999887642 221 22335899999987532 11
Q ss_pred HHHHHHh-CCCCCEEEEe
Q 032797 88 LQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 88 ~~~i~~~-~~~~PvLGIC 104 (133)
+.++.+ +.++|+.-+-
T Consensus 78 -~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 78 -DYLRTELPKTFPIVAVN 94 (291)
T ss_dssp -HHHHHSSCTTSCEEEES
T ss_pred -HHHHHhhccCCCEEEEe
Confidence 234443 4567776553
No 214
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=78.91 E-value=6.3 Score=29.52 Aligned_cols=75 Identities=20% Similarity=0.163 Sum_probs=41.8
Q ss_pred CCCCeEEEE--ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHH
Q 032797 22 NNKNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISL 88 (133)
Q Consensus 22 ~~~~~i~vi--d~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~ 88 (133)
....+|.++ +..+.|... +.+.+++.|+.+.+...+. +.+ .+...++||||+.+... .....
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdGiIi~~~~~----~~~~~ 140 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDY-LPEKEEKVLYEMLSWRPSGVIIAGLEH----SEAAR 140 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTT-CHHHHHHHHHHHHTTCCSEEEEECSCC----CHHHH
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEECCCC----CHHHH
Confidence 344567766 333344333 4556677899998776542 221 12345899999976421 12222
Q ss_pred HHHHHhCCCCCEEEE
Q 032797 89 QTVLELGPTVPLFGV 103 (133)
Q Consensus 89 ~~i~~~~~~~PvLGI 103 (133)
+.+. +.++|+.-+
T Consensus 141 ~~l~--~~~iPvV~i 153 (344)
T 3kjx_A 141 AMLD--AAGIPVVEI 153 (344)
T ss_dssp HHHH--HCSSCEEEE
T ss_pred HHHH--hCCCCEEEE
Confidence 2222 356888766
No 215
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=78.69 E-value=1.7 Score=27.77 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=24.4
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEE
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~ 54 (133)
...+++|+|+|........+.+.|+..|+++...
T Consensus 4 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~ 37 (136)
T 1dcf_A 4 NFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTV 37 (136)
T ss_dssp CCTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEe
Confidence 3456799999875555556778888889876543
No 216
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=78.69 E-value=2.5 Score=26.89 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=41.7
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-C-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-T-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
++|+|+|........+.+.|+..|....+...... . .+.+....+|.+|+-=. -|...+ ...+.+++.....|++
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~--lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIE--MPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHHHCCCCcEE
Confidence 57899987555556677778776522222222111 1 11222336898887221 222222 3455566544578988
Q ss_pred EEe
Q 032797 102 GVC 104 (133)
Q Consensus 102 GIC 104 (133)
-+.
T Consensus 82 ~ls 84 (133)
T 3b2n_A 82 IVT 84 (133)
T ss_dssp EEE
T ss_pred EEe
Confidence 875
No 217
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=78.45 E-value=3.1 Score=27.74 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=43.5
Q ss_pred ccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-C-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhC
Q 032797 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-T-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELG 95 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~ 95 (133)
++....++|+|+|........+.+.|++.+....+...... . .+.+....+|.+|+-=. -+...+ .+.+.+++..
T Consensus 20 ~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~~g~~l~~~lr~~~ 97 (164)
T 3t8y_A 20 HMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIE--MPNLNGIEALKLIMKKA 97 (164)
T ss_dssp ----CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHHS
T ss_pred ccccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCC--CCCCCHHHHHHHHHhcC
Confidence 33445578999987555556677888877543333222111 1 12222347998888321 122222 3445566543
Q ss_pred CCCCEEEEec
Q 032797 96 PTVPLFGVCM 105 (133)
Q Consensus 96 ~~~PvLGICl 105 (133)
. .|++-+.-
T Consensus 98 ~-~~ii~~s~ 106 (164)
T 3t8y_A 98 P-TRVIMVSS 106 (164)
T ss_dssp C-CEEEEEES
T ss_pred C-ceEEEEec
Confidence 3 78777754
No 218
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=78.34 E-value=12 Score=28.62 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=50.2
Q ss_pred CeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCCCC-HHH----HccCCCCEEEECCCCCCcCCchHHHHHHHHh-
Q 032797 25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELT-VEE----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL- 94 (133)
Q Consensus 25 ~~i~vid~~~~~----~~~i~~~l~~~G~~~~v~~~~~~~-~~~----l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~- 94 (133)
+++++|-|..+- ...+.++|++.|+++.+....... ..+ ....++|.||+.||-| .+.+.++.+
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDG------Tl~~v~~~l~ 103 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDG------TINEVSTALI 103 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHH------HHHHHHHHHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccch------HHHHHHHHHh
Confidence 468777553322 234667888899998877643221 111 1123689999999944 333444432
Q ss_pred ----CCCCCEEEEechHHH-HHHHhC
Q 032797 95 ----GPTVPLFGVCMGLQC-IGEAFG 115 (133)
Q Consensus 95 ----~~~~PvLGIClG~Ql-La~a~G 115 (133)
..++|+..|=.|--= ++..+|
T Consensus 104 ~~~~~~~~plgiiP~Gt~N~fa~~l~ 129 (332)
T 2bon_A 104 QCEGDDIPALGILPLGTANDFATSVG 129 (332)
T ss_dssp HCCSSCCCEEEEEECSSSCHHHHHTT
T ss_pred hcccCCCCeEEEecCcCHHHHHHhcC
Confidence 457787777565543 566665
No 219
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=78.32 E-value=16 Score=26.48 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=40.3
Q ss_pred CCeEEEE--ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCCCCCcCCchHHHHH
Q 032797 24 KNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (133)
Q Consensus 24 ~~~i~vi--d~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~~~ 90 (133)
..+|.++ +..+.|... +.+.+++.|+.+.+..... +. +.+...++||+|+.+... .....+.
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~----~~~~~~~ 90 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQ-NMEKELHLLNTMLGKQVDGIVFMGGNI----TDEHVAE 90 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCSCC----CHHHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEecCCC----CHHHHHH
Confidence 3467666 333333332 4556777899988776532 22 122335899999977421 1222222
Q ss_pred HHHhCCCCCEEEEe
Q 032797 91 VLELGPTVPLFGVC 104 (133)
Q Consensus 91 i~~~~~~~PvLGIC 104 (133)
+. +.++|+..+.
T Consensus 91 l~--~~~iPvV~~~ 102 (289)
T 2fep_A 91 FK--RSPVPIVLAA 102 (289)
T ss_dssp HH--HSSSCEEEES
T ss_pred HH--hcCCCEEEEc
Confidence 22 3567877664
No 220
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=78.20 E-value=1.5 Score=32.81 Aligned_cols=62 Identities=6% Similarity=0.136 Sum_probs=34.4
Q ss_pred cccccCCCCCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCC---CCHHHH----c-cCCCCEEEECCC
Q 032797 16 DDKKSKNNKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDE---LTVEEL----K-RKNPRGVLISPG 77 (133)
Q Consensus 16 ~~~~~~~~~~~i~vid~~~~~~---~~i~~~l~~~G~~~~v~~~~~---~~~~~l----~-~~~~DgvIl~GG 77 (133)
++.+.+..+++|+|.-...... ..+.+.|++.|+++..+|.-. .+.+.+ . ..+||.||++-.
T Consensus 13 ~~~~~~l~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~ 85 (286)
T 1jr2_A 13 SSGHIEGRHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSP 85 (286)
T ss_dssp ---------CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCH
T ss_pred cccchhhcCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCH
Confidence 4556778889999997642222 568889999999987766421 122221 1 137999999654
No 221
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=78.18 E-value=14 Score=28.54 Aligned_cols=79 Identities=10% Similarity=0.025 Sum_probs=44.5
Q ss_pred CCeEEEEEC-CCCchHHHHH----HHHhCCCeEEEEeCCCCCHH----HHccCCCCEEEECCCCC-CcCCchHHHHHHHH
Q 032797 24 KNPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPG-APQDSGISLQTVLE 93 (133)
Q Consensus 24 ~~~i~vid~-~~~~~~~i~~----~l~~~G~~~~v~~~~~~~~~----~l~~~~~DgvIl~GG~~-~~~d~~~~~~~i~~ 93 (133)
.++|+++-. ..+++..+.+ .+.+.|++++++...+.+.. ++. ++|+||+ |.|- .-.....+..++.+
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~--~~D~iii-gsP~y~~~~~~~~k~fld~ 332 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTY--DSGAVAF-ASPTLNNTMMPSVAAALNY 332 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHH--TCSEEEE-ECCCBTTBCCHHHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHH--hCCEEEE-EcCccCcCchHHHHHHHHH
Confidence 467777743 2344555544 45557888888876444443 333 7999999 5443 11122334444444
Q ss_pred ---h-C-CCCCEEEEec
Q 032797 94 ---L-G-PTVPLFGVCM 105 (133)
Q Consensus 94 ---~-~-~~~PvLGICl 105 (133)
. - .++|+.-+|-
T Consensus 333 l~~~~~~~~K~~~~~~t 349 (414)
T 2q9u_A 333 VRGLTLIKGKPAFAFGA 349 (414)
T ss_dssp HHHHTTTTTSBEEEEEE
T ss_pred HHhhcccCCCEEEEEEe
Confidence 2 3 6788876653
No 222
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=78.02 E-value=17 Score=26.13 Aligned_cols=52 Identities=10% Similarity=0.266 Sum_probs=30.7
Q ss_pred CeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCC
Q 032797 25 NPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 25 ~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG 77 (133)
.+|.++-. .+.|.. .+.+.+++.|+++.+.... .+. +.+...++||+|+.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQ-NDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 46666632 233332 2455677789998877653 222 1222358999999764
No 223
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=77.40 E-value=8.1 Score=24.48 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=43.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHcc-----CCCCEEEECCCCCCcCCch-HHHHHHHH-hC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSG-ISLQTVLE-LG 95 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~-~~v~~~~~~~~~~l~~-----~~~DgvIl~GG~~~~~d~~-~~~~~i~~-~~ 95 (133)
.++|+|+|........+.+.|+..|+. +..........+.+.. ..+|.+++-= .-|...+ ...+.+++ ..
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~--~mp~~~G~~~~~~lr~~~~ 79 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDV--QMPKVDGLLSTKMIRRDLG 79 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECS--CCSSSCHHHHHHHHHHHSC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeC--CCCCCChHHHHHHHHhhcC
Confidence 468999987555556677888888874 4333221001112222 4689888721 1222233 34556665 34
Q ss_pred CCCCEEEEec
Q 032797 96 PTVPLFGVCM 105 (133)
Q Consensus 96 ~~~PvLGICl 105 (133)
...|++-+.-
T Consensus 80 ~~~~ii~lt~ 89 (133)
T 2r25_B 80 YTSPIVALTA 89 (133)
T ss_dssp CCSCEEEEES
T ss_pred CCCCEEEEEC
Confidence 4679887753
No 224
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=77.16 E-value=11 Score=27.30 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=40.1
Q ss_pred CCeEEEE-ECCCCchHH----HHHHHHhCCCeEEEEeCCCC-C----HHHHccCCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797 24 KNPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDEL-T----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (133)
Q Consensus 24 ~~~i~vi-d~~~~~~~~----i~~~l~~~G~~~~v~~~~~~-~----~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~ 93 (133)
..+|.++ +..+.|... +.+.+++.|+.+.+...+.. . .+.+...++||+|+.+...+ . +.++.
T Consensus 12 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~---~~~~~ 84 (289)
T 3k9c_A 12 SRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFD----T---DELGA 84 (289)
T ss_dssp -CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCC----H---HHHHH
T ss_pred CCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCC----H---HHHHH
Confidence 3455443 544444333 45567778999988764321 1 12233458999999775321 1 22333
Q ss_pred hCCCCCEEEEe
Q 032797 94 LGPTVPLFGVC 104 (133)
Q Consensus 94 ~~~~~PvLGIC 104 (133)
+..++|+.-+-
T Consensus 85 ~~~~iPvV~i~ 95 (289)
T 3k9c_A 85 LADRVPALVVA 95 (289)
T ss_dssp HHTTSCEEEES
T ss_pred HHcCCCEEEEc
Confidence 32278887664
No 225
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=77.01 E-value=1.2 Score=27.56 Aligned_cols=77 Identities=12% Similarity=0.208 Sum_probs=42.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
++|+|+|........+.+.|+..|+.+............+....+|.+++--. .|...+ ...+.+++ ....|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~-~~~~~ii~~ 78 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDGDGIEFIRDLRQ-WSAVPVIVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTEEHHHHHHHHHT-TCCCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHh-CCCCcEEEE
Confidence 57899987555566677888888887654332100111222236898877211 111122 23344443 346888877
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
.
T Consensus 79 s 79 (121)
T 1zh2_A 79 S 79 (121)
T ss_dssp E
T ss_pred E
Confidence 5
No 226
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=76.57 E-value=20 Score=26.63 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=43.4
Q ss_pred CCeEEEEECCC---CchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHcc--CCCCEEEECCCCCCcCCchHH
Q 032797 24 KNPIIVIDNYD---SFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKR--KNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 24 ~~~i~vid~~~---~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~--~~~DgvIl~GG~~~~~d~~~~ 87 (133)
..+|.++-... .|... +.+.+++.|+++.+...+. +.+ .+.. .++||||+.+.. ...
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~-~~~~~~~~i~~~i~~~~~vDgiIi~~~~------~~~ 75 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAER-DPQNTLQQARELFQGRDKPDYLMLVNEQ------YVA 75 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHHHSSSCCSEEEEECCS------SHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHHHHHHHhcCCCCCEEEEeCch------hhH
Confidence 45777774322 23222 4556677899998886542 221 2223 489999996521 112
Q ss_pred HHHHHHh-CCCCCEEEEec
Q 032797 88 LQTVLEL-GPTVPLFGVCM 105 (133)
Q Consensus 88 ~~~i~~~-~~~~PvLGICl 105 (133)
.+.++.+ +.++|++-+..
T Consensus 76 ~~~~~~~~~~giPvV~~~~ 94 (350)
T 3h75_A 76 PQILRLSQGSGIKLFIVNS 94 (350)
T ss_dssp HHHHHHHTTSCCEEEEEES
T ss_pred HHHHHHHHhCCCcEEEEcC
Confidence 3445554 67889887753
No 227
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=76.35 E-value=10 Score=24.49 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=44.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-C-HHHHcc-------CCCCEEEECCCCCCcCCch-HHHHHHHH
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-T-VEELKR-------KNPRGVLISPGPGAPQDSG-ISLQTVLE 93 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~-~~~l~~-------~~~DgvIl~GG~~~~~d~~-~~~~~i~~ 93 (133)
.++|+|+|........+...|+..|....+...... . ...+.. ..+|.+|+-=. -|...+ ...+.+++
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~--lp~~~g~~l~~~l~~ 85 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN--LPKKDGREVLAEIKQ 85 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC--CSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCC--CCCCcHHHHHHHHHh
Confidence 468999987555566677888888874333332211 1 122221 25898887211 122222 34455655
Q ss_pred hC--CCCCEEEEec
Q 032797 94 LG--PTVPLFGVCM 105 (133)
Q Consensus 94 ~~--~~~PvLGICl 105 (133)
.. ..+|++-+.-
T Consensus 86 ~~~~~~~piiils~ 99 (149)
T 1i3c_A 86 NPDLKRIPVVVLTT 99 (149)
T ss_dssp CTTTTTSCEEEEES
T ss_pred CcCcCCCeEEEEEC
Confidence 32 5789987753
No 228
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=76.29 E-value=15 Score=27.24 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=40.3
Q ss_pred CCCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 23 NKNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 23 ~~~~i~vi--d~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
...+|.++ +..+.|.. .+.+.+++.|+.+.+...+. +. +.+...++||+|+.+...+ ....+
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdGiIi~~~~~~----~~~~~ 135 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHY-DAGQELQLLRAYLQHRPDGVLITGLSHA----EPFER 135 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHTTCCSEEEEECSCCC----TTHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHcCCCCEEEEeCCCCC----HHHHH
Confidence 34567666 32233433 35566778999998876542 22 1223358999999774321 12222
Q ss_pred HHHHhCCCCCEEEE
Q 032797 90 TVLELGPTVPLFGV 103 (133)
Q Consensus 90 ~i~~~~~~~PvLGI 103 (133)
.+. ..++|+.-+
T Consensus 136 ~l~--~~~iPvV~~ 147 (339)
T 3h5o_A 136 ILS--QHALPVVYM 147 (339)
T ss_dssp HHH--HTTCCEEEE
T ss_pred HHh--cCCCCEEEE
Confidence 232 345787765
No 229
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=75.75 E-value=21 Score=26.26 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=40.2
Q ss_pred CCCCeEEEEECC-CCchHH----HHHHHHhC-CCeEEEEeCCCCCH-------HHHccCCCCEEEECCCCCCcCCchHHH
Q 032797 22 NNKNPIIVIDNY-DSFTYN----LCQYMGEL-GYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISL 88 (133)
Q Consensus 22 ~~~~~i~vid~~-~~~~~~----i~~~l~~~-G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~ 88 (133)
....+|.++-.. +.|... +.+.+++. |+++.+..... +. +.+...++||||+.+.. .....
T Consensus 4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~-~~~~~~~~i~~l~~~~vdgiIi~~~~-----~~~~~ 77 (325)
T 2x7x_A 4 TPHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGD-DNSKQAEDVHYFMDEGVDLLIISANE-----AAPMT 77 (325)
T ss_dssp --CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCSS-----HHHHH
T ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEeCCC-----HHHHH
Confidence 344577766432 223222 44456667 99988876532 22 12223589999997642 11112
Q ss_pred HHHHHh-CCCCCEEEEe
Q 032797 89 QTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 89 ~~i~~~-~~~~PvLGIC 104 (133)
+.++.+ +.++|+..+-
T Consensus 78 ~~~~~~~~~~iPvV~~~ 94 (325)
T 2x7x_A 78 PIVEEAYQKGIPVILVD 94 (325)
T ss_dssp HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHCCCeEEEeC
Confidence 233333 4568877653
No 230
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=75.73 E-value=8.6 Score=24.99 Aligned_cols=74 Identities=4% Similarity=-0.041 Sum_probs=40.2
Q ss_pred CCCCeEEEEECCCCchHHHHH----HHHhCCCeEEEEe--CCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-h
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQ----YMGELGYHFEVYR--NDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-L 94 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~----~l~~~G~~~~v~~--~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~ 94 (133)
...++|+++=..+.-+..++. +.++.|.++++.. ..+ .++.. .+||.++++| .- ....+.+++ .
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~--~~~~~-~~~DvvLLgP--QV----~y~~~~ik~~~ 74 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA--HYDIM-GVYDLIILAP--QV----RSYYREMKVDA 74 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS--CTTTG-GGCSEEEECG--GG----GGGHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH--HHhhc-cCCCEEEECh--HH----HHHHHHHHHHh
Confidence 346788888554333333444 4555799888854 321 22222 3699888843 21 112233444 3
Q ss_pred -CCCCCEEEEe
Q 032797 95 -GPTVPLFGVC 104 (133)
Q Consensus 95 -~~~~PvLGIC 104 (133)
..++||.-|=
T Consensus 75 ~~~~ipV~vI~ 85 (108)
T 3nbm_A 75 ERLGIQIVATR 85 (108)
T ss_dssp TTTTCEEEECC
T ss_pred hhcCCcEEEeC
Confidence 3579988663
No 231
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=75.33 E-value=1.3 Score=28.74 Aligned_cols=86 Identities=8% Similarity=0.135 Sum_probs=43.8
Q ss_pred ccccCCCCCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCC-CHHHHccC-CCCEEEECCCCCCcCCc-hHHHHHHH
Q 032797 17 DKKSKNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRK-NPRGVLISPGPGAPQDS-GISLQTVL 92 (133)
Q Consensus 17 ~~~~~~~~~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~-~~~~l~~~-~~DgvIl~GG~~~~~d~-~~~~~~i~ 92 (133)
+...+..+.+|+++|........+.+.|++. |+.....-.+.. ..+.+... .+|.+|+-=. -|... -.+.+.++
T Consensus 6 ~~~~~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~lr 83 (145)
T 3kyj_B 6 HHHHHGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIE--MPVMDGMEFLRHAK 83 (145)
T ss_dssp -----CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTT--SCCCTTCHHHHHHH
T ss_pred cCCCCCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCC--CCCCCHHHHHHHHH
Confidence 3455677789999987555556677888876 666432222111 11223334 6998888321 11112 23445566
Q ss_pred HhCCCCCEEEEec
Q 032797 93 ELGPTVPLFGVCM 105 (133)
Q Consensus 93 ~~~~~~PvLGICl 105 (133)
+... .|++-+..
T Consensus 84 ~~~~-~~iiil~~ 95 (145)
T 3kyj_B 84 LKTR-AKICMLSS 95 (145)
T ss_dssp HHCC-CEEC-CBS
T ss_pred hcCC-CCeEEEEE
Confidence 5432 66666653
No 232
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=75.20 E-value=20 Score=25.75 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=32.5
Q ss_pred HHHHHHhCCCeEEEEeCCCC---C---HHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 40 LCQYMGELGYHFEVYRNDEL---T---VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~---~---~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
+.+.+++.|+.+.+...+.. . .+.+...++||+|+.+...+ + ...+.+. +.++|+..+.
T Consensus 30 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~--~~~~~l~--~~~iPvV~~~ 94 (287)
T 3bbl_A 30 MVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN--D--PRVQFLL--KQKFPFVAFG 94 (287)
T ss_dssp HHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT--C--HHHHHHH--HTTCCEEEES
T ss_pred HHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC--c--HHHHHHH--hcCCCEEEEC
Confidence 45566778999877643211 1 12233458999999774321 1 2222232 3467777654
No 233
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=75.13 E-value=9.6 Score=27.05 Aligned_cols=73 Identities=11% Similarity=0.261 Sum_probs=38.9
Q ss_pred eEEEE--ECCCCchHH----HHHHHHhCCCeEEEEeCC-CCCHH-------HHccCC-CCEEEECCCCCCcCCchHHHHH
Q 032797 26 PIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRND-ELTVE-------ELKRKN-PRGVLISPGPGAPQDSGISLQT 90 (133)
Q Consensus 26 ~i~vi--d~~~~~~~~----i~~~l~~~G~~~~v~~~~-~~~~~-------~l~~~~-~DgvIl~GG~~~~~d~~~~~~~ 90 (133)
+|.++ +..+.|... +.+.+++.|+++.+...+ ..+.+ .+...+ +||+|+.+.. ..... +.
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~--~~~~~---~~ 76 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNS--AEDLT---PS 76 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSS--TTTTH---HH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC--HHHHH---HH
Confidence 56666 333344333 455667789999877532 12221 122346 9999997642 11122 23
Q ss_pred HHHh-CCCCCEEEE
Q 032797 91 VLEL-GPTVPLFGV 103 (133)
Q Consensus 91 i~~~-~~~~PvLGI 103 (133)
++.+ +.++|+.-+
T Consensus 77 ~~~~~~~~ipvV~~ 90 (276)
T 3ksm_A 77 VAQYRARNIPVLVV 90 (276)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCcEEEE
Confidence 3333 446787765
No 234
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=75.08 E-value=5.7 Score=27.12 Aligned_cols=48 Identities=4% Similarity=0.135 Sum_probs=27.6
Q ss_pred CeEEEE-ECCCCchHHHHHHH----HhCCCeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797 25 NPIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~~l----~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl 74 (133)
++++|+ ....+.+..+.+.+ .+.|.++++.+.++.+..++. ++|.||+
T Consensus 10 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~ii~ 62 (167)
T 1ykg_A 10 PGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIA--SEKLLIV 62 (167)
T ss_dssp --CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGG--GCSEEEE
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhc--cCCeEEE
Confidence 355555 33445566555544 445777777765433444553 6898888
No 235
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=74.28 E-value=8.1 Score=27.86 Aligned_cols=54 Identities=17% Similarity=0.304 Sum_probs=32.3
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCe-EEEEeCCCCCH-------HHHccCCCCEEEECC
Q 032797 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYH-FEVYRNDELTV-------EELKRKNPRGVLISP 76 (133)
Q Consensus 22 ~~~~~i~vid~--~~~~~~----~i~~~l~~~G~~-~~v~~~~~~~~-------~~l~~~~~DgvIl~G 76 (133)
....+|.++-. .+.|.. .+.+.+++.|+. +.+..... +. +.+...++||+|+.+
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNS-DVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSC-CHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEcc
Confidence 44557777733 223332 355667778999 77765532 22 123345899999987
No 236
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=74.18 E-value=16 Score=27.05 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=41.1
Q ss_pred CCCCeEEEEE--CCCCchHH----HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCCCCCcCCchHHH
Q 032797 22 NNKNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISL 88 (133)
Q Consensus 22 ~~~~~i~vid--~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~ 88 (133)
....+|.++- ..+.|... +.+.+++.|+.+.+...+. +. +.+...++||+|+.+...+ .
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~--- 129 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQ-NQDKELHLLNNMLGKQVDGIIFMSGNVT----E--- 129 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHTSCCSSCCEEECCSSCC----H---
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCC-ChHHHHHHHHHHHhCCCcEEEEecCCCC----H---
Confidence 4455777663 33344333 4556677899988876532 11 1122357999999774321 1
Q ss_pred HHHHHh-CCCCCEEEEe
Q 032797 89 QTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 89 ~~i~~~-~~~~PvLGIC 104 (133)
+.+..+ +.++|+.-+.
T Consensus 130 ~~~~~l~~~~iPvV~~~ 146 (332)
T 2hsg_A 130 EHVEELKKSPVPVVLAA 146 (332)
T ss_dssp HHHHHHTTSSSCEEEES
T ss_pred HHHHHHHhCCCCEEEEc
Confidence 223333 4567877654
No 237
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=73.85 E-value=5.6 Score=31.89 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=28.5
Q ss_pred CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHHc----c--CCCCEEEECCCCC
Q 032797 34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEELK----R--KNPRGVLISPGPG 79 (133)
Q Consensus 34 ~~~~~~i~~~l~~~G~~~~v~~--~~~~~~~~l~----~--~~~DgvIl~GG~~ 79 (133)
|++...+...|++.|+++.... .| +.+.+. . .++|.||.+||.+
T Consensus 203 dsn~~~L~~~l~~~G~~v~~~~iv~D--d~~~i~~al~~a~~~~DlvittGG~s 254 (411)
T 1g8l_A 203 DTNRLAVHLMLEQLGCEVINLGIIRD--DPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_dssp CCHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHHCSEEEECSSSC
T ss_pred cCchHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHhhcCCEEEECCCCC
Confidence 3455668889999999876432 22 222221 1 2689999999965
No 238
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=73.78 E-value=22 Score=25.52 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=41.3
Q ss_pred CCCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHH
Q 032797 21 KNNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 21 ~~~~~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.....+|.++-. .+.|.. .+.+.+++.|+.+.+...+. +.+ .+...++||+|+.+... ....
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~----~~~~ 79 (285)
T 3c3k_A 5 TAKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTES-DLARSRSCLTLLSGKMVDGVITMDALS----ELPE 79 (285)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHTHHHHTTCCSEEEECCCGG----GHHH
T ss_pred CCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEeCCCC----ChHH
Confidence 344557777743 223322 24556677899998876532 221 12235899999976421 1122
Q ss_pred HHHHHHhCCCCCEEEEe
Q 032797 88 LQTVLELGPTVPLFGVC 104 (133)
Q Consensus 88 ~~~i~~~~~~~PvLGIC 104 (133)
.+.++ .++|+.-+.
T Consensus 80 ~~~l~---~~iPvV~~~ 93 (285)
T 3c3k_A 80 LQNII---GAFPWVQCA 93 (285)
T ss_dssp HHHHH---TTSSEEEES
T ss_pred HHHHh---cCCCEEEEc
Confidence 23333 568887664
No 239
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=73.46 E-value=22 Score=25.34 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=43.2
Q ss_pred CCCeEEEEE--CCCCchHH----HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 23 NKNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 23 ~~~~i~vid--~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
...+|.++- ..+.|... +.+.+++.|+.+.+...+. +. +.+...++||+|+.+... . +
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~---~ 76 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA-DIEREKTLLRAIGSRGFDGLILQSFSN-----P---Q 76 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT-CHHHHHHHHHHHHTTTCSEEEEESSCC-----H---H
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEecCCc-----H---H
Confidence 345676663 22333333 4556777899998887642 22 123345899999977532 2 3
Q ss_pred HHHHh-CCCCCEEEEec
Q 032797 90 TVLEL-GPTVPLFGVCM 105 (133)
Q Consensus 90 ~i~~~-~~~~PvLGICl 105 (133)
.++.+ +.++|+.-+..
T Consensus 77 ~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 77 TVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHTTSSCEEEESC
T ss_pred HHHHHHHCCCCEEEEec
Confidence 34443 56788876643
No 240
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=72.41 E-value=4.8 Score=25.28 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=42.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh-CCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL-GPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~-~~~~P 99 (133)
.++|+++|........+.+.|... |+.+.....+... .+.+....+|.+++--. -|...+ ...+.+++. ....|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDII--MPHLDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHHCSSCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCc
Confidence 358999987555556677778776 6654322222111 12222336898887321 122222 344556553 34567
Q ss_pred EEEEec
Q 032797 100 LFGVCM 105 (133)
Q Consensus 100 vLGICl 105 (133)
++-+.-
T Consensus 80 ii~ls~ 85 (130)
T 1dz3_A 80 VIMLTA 85 (130)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 776643
No 241
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=72.10 E-value=5.8 Score=25.50 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=41.1
Q ss_pred CeEEEEECCCCchHHHHHHHHh--CCCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGE--LGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~--~G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
++|+|+|........+...|.. .|+.+...-.+... ...+....+|.+|+-=. -|...+ .+.+.+++.....|+
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVR--MPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESC--CSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCcE
Confidence 5899998754444556666653 46655422221111 12233346898876221 122222 344556655556888
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-+.-
T Consensus 81 i~ls~ 85 (141)
T 3cu5_A 81 IFMSG 85 (141)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 87653
No 242
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=71.66 E-value=14 Score=26.70 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=39.2
Q ss_pred CeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCC-----HHHHccCCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797 25 NPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (133)
Q Consensus 25 ~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~~~~~~~-----~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~ 93 (133)
.+|.++-. .+.|.. .+.+.+++.|+++.+....+.. .+.+...++||||+.+. +.......++.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~-----~~~~~~~~~~~ 77 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTP-----DPKLGSAIVAK 77 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECS-----CGGGHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC-----CchhhHHHHHH
Confidence 46666632 223322 2455667789998877653111 11222358999999763 22222233433
Q ss_pred h-CCCCCEEEE
Q 032797 94 L-GPTVPLFGV 103 (133)
Q Consensus 94 ~-~~~~PvLGI 103 (133)
+ +.++|+.-+
T Consensus 78 ~~~~~iPvV~~ 88 (306)
T 8abp_A 78 ARGYDMKVIAV 88 (306)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHCCCcEEEe
Confidence 3 456777654
No 243
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=71.50 E-value=4.3 Score=31.79 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=46.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
++|+|+|........+...|+..|+++..........+.+....+|.+|+-= ..|...+ ...+.+++.....|++-+
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllD~--~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDL--LLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEES--BCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 5799998755556667788888898876543211111223335799888721 1122233 345556665567888877
Q ss_pred ec
Q 032797 104 CM 105 (133)
Q Consensus 104 Cl 105 (133)
.-
T Consensus 79 T~ 80 (387)
T 1ny5_A 79 TG 80 (387)
T ss_dssp EE
T ss_pred eC
Confidence 53
No 244
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=71.00 E-value=27 Score=25.25 Aligned_cols=59 Identities=10% Similarity=0.242 Sum_probs=33.2
Q ss_pred HHHHHHhCCCeEEEEeCCCC-C----HHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 40 LCQYMGELGYHFEVYRNDEL-T----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~-~----~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
+.+.+++.|+.+.+...+.. . .+.+...++||||+.+...+ + ...+.+. +.++|+.-+-
T Consensus 32 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~--~--~~~~~l~--~~~iPvV~~~ 95 (294)
T 3qk7_A 32 IGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPE--D--FRLQYLQ--KQNFPFLALG 95 (294)
T ss_dssp HHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSS--C--HHHHHHH--HTTCCEEEES
T ss_pred HHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCC--h--HHHHHHH--hCCCCEEEEC
Confidence 45567778999988765421 1 11223358999999875321 1 2222222 3457776554
No 245
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=70.99 E-value=7.7 Score=26.73 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=23.0
Q ss_pred CCCEEEECCCCCCc-CCchHHHHHHHHh---CCCCCEEEEech
Q 032797 68 NPRGVLISPGPGAP-QDSGISLQTVLEL---GPTVPLFGVCMG 106 (133)
Q Consensus 68 ~~DgvIl~GG~~~~-~d~~~~~~~i~~~---~~~~PvLGIClG 106 (133)
.+|+||+ +.|--- .-...+..+|.++ -.++|++-++.|
T Consensus 84 ~aD~iI~-~sP~y~~~~p~~lK~~iD~~~~~l~gK~~~~~~~G 125 (191)
T 1t0i_A 84 ALDIIVF-VTPQYNWGYPAALKNAIDRLYHEWHGKPALVVSYG 125 (191)
T ss_dssp TCSEEEE-EEECBTTBCCHHHHHHHHTCSTTTTTCEEEEEEEE
T ss_pred hCCEEEE-EeceECCCCCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 7999999 544311 1233455666653 257888877754
No 246
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=70.91 E-value=7.5 Score=29.29 Aligned_cols=74 Identities=9% Similarity=0.165 Sum_probs=40.0
Q ss_pred CCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 23 ~~~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
....|.++-. .+.|.. .+.+.+++.|+.+.+...+. +.+ .+....+||+|+.+... .....+
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdGiI~~~~~~----~~~~~~ 143 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAY-SPEREEQLVETMLRRRPEAMVLSYDGH----TEQTIR 143 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTCCSEEEEECSCC----CHHHHH
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEeCCCC----CHHHHH
Confidence 3456766632 222322 35566777899998876542 221 12235899999976432 122222
Q ss_pred HHHHhCCCCCEEEE
Q 032797 90 TVLELGPTVPLFGV 103 (133)
Q Consensus 90 ~i~~~~~~~PvLGI 103 (133)
.+. +.++|+.-|
T Consensus 144 ~l~--~~~iPvV~i 155 (355)
T 3e3m_A 144 LLQ--RASIPIVEI 155 (355)
T ss_dssp HHH--HCCSCEEEE
T ss_pred HHH--hCCCCEEEE
Confidence 222 456888766
No 247
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=70.69 E-value=10 Score=27.72 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=40.8
Q ss_pred CCCCCeEEEEECC-------CCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcC
Q 032797 21 KNNKNPIIVIDNY-------DSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQ 82 (133)
Q Consensus 21 ~~~~~~i~vid~~-------~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~ 82 (133)
.....+|.++-.. +.|... +.+.+++.|+.+.+...+. +.+ .+...++||+|+.+...+
T Consensus 19 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~~-- 95 (305)
T 3huu_A 19 TNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSEN-SGDLYHEVKTMIQSKSVDGFILLYSLKD-- 95 (305)
T ss_dssp --CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSS-HHHHHHHHHHHHHTTCCSEEEESSCBTT--
T ss_pred hCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEeCCcCC--
Confidence 3445678777332 233322 4456677899988765431 111 123458999999775321
Q ss_pred CchHHHHHHHHhCCCCCEEEEe
Q 032797 83 DSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 83 d~~~~~~~i~~~~~~~PvLGIC 104 (133)
. ...+.++ +.++|+.-+-
T Consensus 96 -~-~~~~~l~--~~~iPvV~i~ 113 (305)
T 3huu_A 96 -D-PIEHLLN--EFKVPYLIVG 113 (305)
T ss_dssp -C-HHHHHHH--HTTCCEEEES
T ss_pred -c-HHHHHHH--HcCCCEEEEC
Confidence 1 2222222 3467776653
No 248
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=70.53 E-value=23 Score=25.47 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=30.9
Q ss_pred CCCCeEEEEEC--CC--CchHH----HHHHHHhCCCeEEEEeCCCC--CHHH----HccCCCCEEEECCC
Q 032797 22 NNKNPIIVIDN--YD--SFTYN----LCQYMGELGYHFEVYRNDEL--TVEE----LKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid~--~~--~~~~~----i~~~l~~~G~~~~v~~~~~~--~~~~----l~~~~~DgvIl~GG 77 (133)
....+|.++-. .+ .|... +.+.+++.|+.+.+...+.. .... +...++||+|+.+.
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 44556766622 12 44333 44566678999887754311 1111 22358999999764
No 249
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=70.35 E-value=15 Score=26.46 Aligned_cols=56 Identities=13% Similarity=0.306 Sum_probs=30.5
Q ss_pred CCCCeEEEE--EC-CCCchHH----HHHHHHhC-CCeEEEEeC--CCCCH-------HHHccCCCCEEEECCC
Q 032797 22 NNKNPIIVI--DN-YDSFTYN----LCQYMGEL-GYHFEVYRN--DELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vi--d~-~~~~~~~----i~~~l~~~-G~~~~v~~~--~~~~~-------~~l~~~~~DgvIl~GG 77 (133)
....+|.++ +. .+.|... +.+.+++. |+.+.+... +..+. +.+...++||||+.+.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 344567655 32 3445433 44556667 888776532 11222 1233458999999764
No 250
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=69.66 E-value=9.8 Score=27.70 Aligned_cols=37 Identities=8% Similarity=0.167 Sum_probs=24.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+.+.+...+. +. +.+...++||+|+.+.
T Consensus 34 i~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 34 ISETCNQHGYGTQTTVSNN-MNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp HHHHHHTTTCEEEECCCCS-HHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred HHHHHHHCCCEEEEEcCCC-ChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 4556777899988765432 11 1223458999999865
No 251
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=69.41 E-value=5.4 Score=27.61 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=42.8
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G-~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~P 99 (133)
..++|+|+|....+...+...|+..+ +.+...-.+... .+.+....+|.+|+--. -|...+ ...+.+++.....|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLN--MPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETT--STTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHHhCCCCc
Confidence 34689999875555556777777654 554222222111 11222336898887221 122222 34455665445678
Q ss_pred EEEEec
Q 032797 100 LFGVCM 105 (133)
Q Consensus 100 vLGICl 105 (133)
++-+.-
T Consensus 82 ii~ls~ 87 (215)
T 1a04_A 82 IVVFSV 87 (215)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 877753
No 252
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=69.00 E-value=24 Score=23.97 Aligned_cols=79 Identities=14% Similarity=-0.058 Sum_probs=41.1
Q ss_pred CeEEEEE-CCCCchHHHHHHHHh-CC-CeEEEEeCCCCCHHHHccCCCCEEEECCCCC-CcCCc-hHHHHHHHHh----C
Q 032797 25 NPIIVID-NYDSFTYNLCQYMGE-LG-YHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDS-GISLQTVLEL----G 95 (133)
Q Consensus 25 ~~i~vid-~~~~~~~~i~~~l~~-~G-~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-~~~d~-~~~~~~i~~~----~ 95 (133)
|+|+|+- ...+.+..+.+.+.+ .+ ..+++.+.......++. ++|.||+ |.|- .-.+. ..+.+++..+ -
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~~v~i~~~~~~~~~~l~--~~d~ii~-g~pt~~~G~~p~~~~~f~~~l~~~~l 77 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLE--AYDILLL-GIPTWYYGEAQCDWDDFFPTLEEIDF 77 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEEGGGCCHHHHH--TCSEEEE-ECCEETTTEECHHHHHHHHHHTTCCC
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccCceEEEEcccCChhHhh--hCCEEEE-EEeecCCCcChHHHHHHHhhhhhccc
Confidence 4666663 233556667777654 22 24666665433455554 7999998 4432 11111 2233444432 2
Q ss_pred CCCCEEEEech
Q 032797 96 PTVPLFGVCMG 106 (133)
Q Consensus 96 ~~~PvLGIClG 106 (133)
.++++.-+|.|
T Consensus 78 ~gk~vavfg~g 88 (175)
T 1ag9_A 78 NGKLVALFGCG 88 (175)
T ss_dssp TTCEEEEEEEC
T ss_pred CCCEEEEEEEC
Confidence 46777666653
No 253
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=68.42 E-value=21 Score=27.27 Aligned_cols=82 Identities=13% Similarity=0.018 Sum_probs=43.8
Q ss_pred CCCeEEEEEC-CCCchHHHHH----HHHhCCCeEEEEeCCCCCHHHHc--cCCCCEEEECCCCC-CcCCchHHHHHHH--
Q 032797 23 NKNPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPG-APQDSGISLQTVL-- 92 (133)
Q Consensus 23 ~~~~i~vid~-~~~~~~~i~~----~l~~~G~~~~v~~~~~~~~~~l~--~~~~DgvIl~GG~~-~~~d~~~~~~~i~-- 92 (133)
..++++++-. ..+++..+.+ .+.+.|++++++...+.+.+++. -..+|+||+ |.|- +-.....+..++.
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iii-gsP~y~~~~~~~~k~~ld~l 333 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIAL-GAPTIYDEPYPSVGDLLMYL 333 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEE-ECCEETTEECTHHHHHHHHH
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEE-ECccccccchHHHHHHHHHh
Confidence 4467777643 2234554444 45557888988876544444221 127999999 5442 1111222333443
Q ss_pred -Hh-C---CCCCEEEEec
Q 032797 93 -EL-G---PTVPLFGVCM 105 (133)
Q Consensus 93 -~~-~---~~~PvLGICl 105 (133)
.. . .++|+.-+|-
T Consensus 334 ~~~~~~~l~~k~~~~~~~ 351 (404)
T 2ohh_A 334 RGLKFNRTLTRKALVFGS 351 (404)
T ss_dssp HHHCGGGTCCEEEEEEEE
T ss_pred hhccccccCCCEEEEEEe
Confidence 22 2 5788876653
No 254
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=68.41 E-value=12 Score=27.02 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=41.1
Q ss_pred CCeEEEEE--CCCCchHH----HHHHHHhCCCeEEEEeCCCC-CHH-------HHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 24 KNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDEL-TVE-------ELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 24 ~~~i~vid--~~~~~~~~----i~~~l~~~G~~~~v~~~~~~-~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
..+|.++- ..+.|... +.+.+++.|+++.+...+.. +.+ .+...++||||+.+...+ .....
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~--~~~~~-- 80 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH--AYEHN-- 80 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT--SSTTT--
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh--HHHHH--
Confidence 45676663 22333333 45566778999998876421 211 122348999999864322 11122
Q ss_pred HHHHhCCCCCEEEE
Q 032797 90 TVLELGPTVPLFGV 103 (133)
Q Consensus 90 ~i~~~~~~~PvLGI 103 (133)
++.+..++|+.-+
T Consensus 81 -~~~~~~~iPvV~~ 93 (304)
T 3o1i_D 81 -LKSWVGNTPVFAT 93 (304)
T ss_dssp -HHHHTTTSCEEEC
T ss_pred -HHHHcCCCCEEEe
Confidence 2222267888776
No 255
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=68.24 E-value=8.8 Score=29.75 Aligned_cols=74 Identities=15% Similarity=0.367 Sum_probs=38.6
Q ss_pred CCCCeEEEE-ECCCCchHH----HHHHHHhCCCeEEEEeCCCC--CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 032797 22 NNKNPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (133)
Q Consensus 22 ~~~~~i~vi-d~~~~~~~~----i~~~l~~~G~~~~v~~~~~~--~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~ 94 (133)
....+|.|+ +..+.|... +.+.+++.|+.+.+...+.. ..+.+...++||||+.. . .. +.++.+
T Consensus 23 ~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~-----~-~~---~~~~~l 93 (412)
T 4fe7_A 23 TKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADF-----D-DK---QIEQAL 93 (412)
T ss_dssp CCCEEEEEECCTTSHHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEET-----T-CH---HHHHHH
T ss_pred CCCceEEEEeCCcchhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEec-----C-Ch---HHHHHH
Confidence 344567666 422233222 44566678998887764321 12334445899999921 1 11 234443
Q ss_pred -CCCCCEEEEe
Q 032797 95 -GPTVPLFGVC 104 (133)
Q Consensus 95 -~~~~PvLGIC 104 (133)
+.++|+.-|.
T Consensus 94 ~~~~iPvV~i~ 104 (412)
T 4fe7_A 94 ADVDVPIVGVG 104 (412)
T ss_dssp TTCCSCEEEEE
T ss_pred hhCCCCEEEec
Confidence 5689988775
No 256
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=67.89 E-value=7.2 Score=26.29 Aligned_cols=78 Identities=9% Similarity=-0.026 Sum_probs=40.4
Q ss_pred CeEEEEE-CCCCchHHHHHHHHh-CC--CeEEEEeCCCCCHHHHccCCCCEEEECCCCC-CcCCc-hHHHHHHHHh----
Q 032797 25 NPIIVID-NYDSFTYNLCQYMGE-LG--YHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDS-GISLQTVLEL---- 94 (133)
Q Consensus 25 ~~i~vid-~~~~~~~~i~~~l~~-~G--~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-~~~d~-~~~~~~i~~~---- 94 (133)
++|+|+- ...+.+..+.+.+.+ .+ .++++++....+.+++. ++|.||+ |.|- .-.+. ..+.+++..+
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~~~v~~~~~~~~~~~~l~--~~d~ii~-g~pty~~g~~p~~~~~f~~~l~~~~ 77 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLN--AYDYLII-GCPTWNVGELQSDWEGIYDDLDSVN 77 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTSTTTEEEEEGGGCCGGGGG--GCSEEEE-ECCEETTTEECHHHHHHGGGGGGSC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcccceEEEEhhhCCHhHHh--hCCEEEE-EecccCCCcCCHHHHHHHHHhhhhc
Confidence 3566662 233556667776654 23 34777765433344454 6999998 4432 11111 1233344432
Q ss_pred CCCCCEEEEec
Q 032797 95 GPTVPLFGVCM 105 (133)
Q Consensus 95 ~~~~PvLGICl 105 (133)
-.++|+.-+|.
T Consensus 78 l~gk~~~~f~t 88 (169)
T 1czn_A 78 FQGKKVAYFGA 88 (169)
T ss_dssp CTTCEEEEEEE
T ss_pred cCCCEEEEEEE
Confidence 25678777774
No 257
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=67.84 E-value=4.8 Score=32.16 Aligned_cols=46 Identities=28% Similarity=0.231 Sum_probs=27.7
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc----c--CCCCEEEECCCCC
Q 032797 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPG 79 (133)
Q Consensus 34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~--~~~DgvIl~GG~~ 79 (133)
|++...+...|++.|+++.....-..+.+.+. . .++|.||.+||.+
T Consensus 206 DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s 257 (402)
T 1uz5_A 206 DINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGAS 257 (402)
T ss_dssp CCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC-
T ss_pred cchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 34455688889999998764321101222221 1 2589999999965
No 258
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=67.67 E-value=9.4 Score=28.48 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=47.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHccCCCCEEEECCCCCCc-C-CchHHHHHHHHhCCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAP-Q-DSGISLQTVLELGPTV 98 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~-v~~~~~~~~~~l~~~~~DgvIl~GG~~~~-~-d~~~~~~~i~~~~~~~ 98 (133)
....+|+++|-.......+...|+..|+.+. .........+.+....+|.||+= = .-| . +--+..+.|++.. ++
T Consensus 158 ~l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D-~-~MPd~mdG~e~~~~ir~~~-~~ 234 (286)
T 3n0r_A 158 ELATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLAD-I-QLADGSSGIDAVKDILGRM-DV 234 (286)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEE-S-CCTTSCCTTTTTHHHHHHT-TC
T ss_pred cCCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEc-C-CCCCCCCHHHHHHHHHhcC-CC
Confidence 4456899997544445567788999999887 44321111222334579988761 1 012 1 1122345666655 89
Q ss_pred CEEEEec
Q 032797 99 PLFGVCM 105 (133)
Q Consensus 99 PvLGICl 105 (133)
||+.+--
T Consensus 235 piI~lT~ 241 (286)
T 3n0r_A 235 PVIFITA 241 (286)
T ss_dssp CEEEEES
T ss_pred CEEEEeC
Confidence 9998763
No 259
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=67.30 E-value=23 Score=25.24 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=39.3
Q ss_pred CCeEEEEEC--C--CCchHH----HHHHHHhCCCeEEEEeCC-CCCH-------HHHccCCCCEEEECCCCCCcCCchHH
Q 032797 24 KNPIIVIDN--Y--DSFTYN----LCQYMGELGYHFEVYRND-ELTV-------EELKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 24 ~~~i~vid~--~--~~~~~~----i~~~l~~~G~~~~v~~~~-~~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
..+|.++-. . +.|... +.+.+++.|+++.+...+ ..+. +.+...++||+|+.+... .. .
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~--~~---~ 79 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY--EK---T 79 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT--TT---T
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh--HH---h
Confidence 456776632 2 233333 445566789998876542 1222 122235899999976432 11 1
Q ss_pred HHHHHHh-CCCCCEEEE
Q 032797 88 LQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 88 ~~~i~~~-~~~~PvLGI 103 (133)
.+.++.+ +.++|++.+
T Consensus 80 ~~~~~~~~~~~iPvV~~ 96 (289)
T 3brs_A 80 YDAAKEIKDAGIKLIVI 96 (289)
T ss_dssp HHHHTTTGGGTCEEEEE
T ss_pred HHHHHHHHHCCCcEEEE
Confidence 1233333 356776654
No 260
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=67.05 E-value=5.1 Score=27.83 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=42.5
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
++|+|+|........+...|+..| .+.... +.++... ..+|.+|+--. -|...+ ...+.+++.....|++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~----~~~~al~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~ii 75 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFL----TGEDFLNDEEAFHVVVLDVM--LPDYSGYEICRMIKETRPETWVI 75 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEES----SHHHHHHCCSCCSEEEEESB--CSSSBHHHHHHHHHHHCTTSEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEEC----CHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCcEE
Confidence 589999875555566778888777 443332 2222211 47898887221 122222 3445566554678988
Q ss_pred EEec
Q 032797 102 GVCM 105 (133)
Q Consensus 102 GICl 105 (133)
-+.-
T Consensus 76 ~lt~ 79 (220)
T 1p2f_A 76 LLTL 79 (220)
T ss_dssp EEES
T ss_pred EEEc
Confidence 8763
No 261
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=66.43 E-value=29 Score=24.77 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=40.4
Q ss_pred CCCCCeEEEEEC---CCCchHH----HHHHHHhCCCeEEEEeC--CCCC----HHHHccCCCCEEEECCCCCCcCCchHH
Q 032797 21 KNNKNPIIVIDN---YDSFTYN----LCQYMGELGYHFEVYRN--DELT----VEELKRKNPRGVLISPGPGAPQDSGIS 87 (133)
Q Consensus 21 ~~~~~~i~vid~---~~~~~~~----i~~~l~~~G~~~~v~~~--~~~~----~~~l~~~~~DgvIl~GG~~~~~d~~~~ 87 (133)
.....+|.++-. .+.|... +.+.+++.|+.+.+... +... .+.+...++||+|+.+.. ...
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-----~~~- 81 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANIS-----NYD- 81 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCC-----HHH-
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCC-----ccc-
Confidence 344557766632 2334333 45566778998776532 1111 122333589999997642 111
Q ss_pred HHHHHHhCCCCCEEEEe
Q 032797 88 LQTVLELGPTVPLFGVC 104 (133)
Q Consensus 88 ~~~i~~~~~~~PvLGIC 104 (133)
..+.+..+.++|+.-+-
T Consensus 82 ~~~~~~~~~~iPvV~~~ 98 (289)
T 3g85_A 82 LEYLNKASLTLPIILFN 98 (289)
T ss_dssp HHHHHHCCCSSCEEEES
T ss_pred HHHHHhccCCCCEEEEC
Confidence 22333346678887653
No 262
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=65.84 E-value=5.6 Score=31.71 Aligned_cols=50 Identities=16% Similarity=0.037 Sum_probs=25.4
Q ss_pred CchHHHHHHHHhCCCeEEEEeCCCCCHHHHc------cCCCCEEEECCCCC-CcCCc
Q 032797 35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG-APQDS 84 (133)
Q Consensus 35 ~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~------~~~~DgvIl~GG~~-~~~d~ 84 (133)
++...+...|++.|+++.....-..+.+.+. ..++|.||.+||.+ +++|.
T Consensus 211 sn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s~g~~D~ 267 (396)
T 1wu2_A 211 TNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAFGDKDY 267 (396)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC--------CC
T ss_pred chHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCCCChhhH
Confidence 3445688889999998764321101223321 12699999999865 33343
No 263
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=65.02 E-value=5.8 Score=26.05 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=36.7
Q ss_pred EEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEE
Q 032797 28 IVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGV 103 (133)
Q Consensus 28 ~vid~~~~~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGI 103 (133)
++|.|.-.. ...+.+.|...|+++.- +.+ ...|++|+.-|..+.+.. -....|+. .+.++|++||
T Consensus 7 lFISh~~~d~~~~L~~~l~~~~f~~~~--------~~I--~~~~~vIvL~G~~t~~s~-wv~~EI~~A~~~gkpIigV 73 (111)
T 1eiw_A 7 LYITEGEVEDYRVFLERLEQSGLEWRP--------ATP--EDADAVIVLAGLWGTRRD-EILGAVDLARKSSKPIITV 73 (111)
T ss_dssp EEECCCCSHHHHHHHHHHHHHCSCEEE--------CCS--SSCSEEEEEGGGTTTSHH-HHHHHHHHHTTTTCCEEEE
T ss_pred EEEecccHhHHHHHHHHHhCCCCeeec--------Ccc--ccCCEEEEEeCCCcCCCh-HHHHHHHHHHHcCCCEEEE
Confidence 566553333 23355555545666543 233 268999987776443222 12233444 4789999998
No 264
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=64.75 E-value=17 Score=24.26 Aligned_cols=29 Identities=7% Similarity=0.219 Sum_probs=18.3
Q ss_pred CCCeEEEEE-CCCCchHHHHHHH-HhC-CCeE
Q 032797 23 NKNPIIVID-NYDSFTYNLCQYM-GEL-GYHF 51 (133)
Q Consensus 23 ~~~~i~vid-~~~~~~~~i~~~l-~~~-G~~~ 51 (133)
+.++++|+- ...+.+..+.+.+ +.. +.++
T Consensus 2 M~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~ 33 (151)
T 3edo_A 2 MAKKTLILYYSWSGETKKMAEKINSEIKDSEL 33 (151)
T ss_dssp CCCCEEEEECCSSSHHHHHHHHHHHHSTTCEE
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHhccCCCE
Confidence 345777773 3345677788888 444 6664
No 265
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=64.27 E-value=35 Score=24.12 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=30.6
Q ss_pred CCCeEEEEEC--CCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECC
Q 032797 23 NKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (133)
Q Consensus 23 ~~~~i~vid~--~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~G 76 (133)
...+|.++-. .+.|... +.+.+++.|+.+.+..... +.+ .+...++||+|+.+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDN-DIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEec
Confidence 3456766632 2333333 4556777899998887642 221 12235899999977
No 266
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=63.62 E-value=14 Score=26.88 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=32.8
Q ss_pred CCCCeEEEEE--CCCCc-----hHHHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797 22 NNKNPIIVID--NYDSF-----TYNLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid--~~~~~-----~~~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG 77 (133)
....+|.++- ..+.| ...+.+.+++.|+.+.+...+. +.+ .+...++||+|+.+.
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGG-SSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEecC
Confidence 4445677662 22122 2346667788999998887542 221 123358999999764
No 267
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=63.08 E-value=19 Score=26.85 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=32.2
Q ss_pred CCCCeEEEEEC--CCCchHH----HHHHHHhCCCeEEEEeCCCCCH------HHHccCCCCEEEECCC
Q 032797 22 NNKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid~--~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~------~~l~~~~~DgvIl~GG 77 (133)
....+|.++-. .+.|... +.+.+++.|+.+.+...+. .. +.+...++||+|+.+.
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 34456776632 2233322 4556677899999887653 11 1122348999999875
No 268
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=62.85 E-value=8.7 Score=30.78 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=33.2
Q ss_pred CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc----c--CCCCEEEECCCCCCcCCchHHHHHH
Q 032797 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGAPQDSGISLQTV 91 (133)
Q Consensus 34 ~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~--~~~DgvIl~GG~~~~~d~~~~~~~i 91 (133)
|++...+...|++.|+++.....-..+.+.+. . .++|.||.+||.+ +.+.+...+.+
T Consensus 207 dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s-~g~~D~t~~al 269 (419)
T 2fts_A 207 DSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVS-MGEKDYLKQVL 269 (419)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCS-SSCCHHHHHHH
T ss_pred cCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCc-CCCcccHHHHH
Confidence 34455688899999998754321101222221 1 2589999999964 44444444555
No 269
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=62.73 E-value=23 Score=24.30 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=18.1
Q ss_pred CCeEEEEEC-CCCchHHHHHHHHh-CCCeEE
Q 032797 24 KNPIIVIDN-YDSFTYNLCQYMGE-LGYHFE 52 (133)
Q Consensus 24 ~~~i~vid~-~~~~~~~i~~~l~~-~G~~~~ 52 (133)
.|+++|+-+ ..+.+..+.+.+.+ .+.+..
T Consensus 13 ~mkilIvY~S~tGnT~~vA~~Ia~~l~~d~~ 43 (171)
T 4ici_A 13 NSKILVAYFSATGTTARAAEKLGAAVGGDLY 43 (171)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCeE
Confidence 467777733 33557778877765 566643
No 270
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=62.61 E-value=44 Score=24.62 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=32.8
Q ss_pred CCCCeEEEEEC----CCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797 22 NNKNPIIVIDN----YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid~----~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG 77 (133)
....+|.++-. .+.|.. .+.+.+++.|+.+.+..... +.+ .+...++||+|+.+.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKH-SAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTT-SHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 34456766633 233432 25566778999998887542 221 222358999999774
No 271
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=62.58 E-value=32 Score=24.60 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=20.5
Q ss_pred CeEEEEECC---CCchHHHHHH----HHhC-CCeEEEEeC
Q 032797 25 NPIIVIDNY---DSFTYNLCQY----MGEL-GYHFEVYRN 56 (133)
Q Consensus 25 ~~i~vid~~---~~~~~~i~~~----l~~~-G~~~~v~~~ 56 (133)
|+|++|..- .+++..+.+. +++. |.+++++..
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl 41 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTP 41 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 578888542 2666655554 4444 999988754
No 272
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=62.30 E-value=14 Score=25.36 Aligned_cols=47 Identities=6% Similarity=0.120 Sum_probs=28.4
Q ss_pred eEEEE-ECCCCchHHHHHHHHh-CC--CeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797 26 PIIVI-DNYDSFTYNLCQYMGE-LG--YHFEVYRNDELTVEELKRKNPRGVLI 74 (133)
Q Consensus 26 ~i~vi-d~~~~~~~~i~~~l~~-~G--~~~~v~~~~~~~~~~l~~~~~DgvIl 74 (133)
+|+|+ ....+.+..+.+.+.+ .+ .++++++..+.+.+++. ++|.||+
T Consensus 2 kilI~Y~S~tGnT~~iA~~ia~~l~~~~~v~~~~~~~~~~~~l~--~~d~iil 52 (179)
T 1yob_A 2 KIGLFFGSNTGKTRKVAKSIKKRFDDETMSDALNVNRVSAEDFA--QYQFLIL 52 (179)
T ss_dssp CEEEEECCSSSHHHHHHHHHHTTSCTTTBCCCEEGGGCCHHHHH--TCSEEEE
T ss_pred eEEEEEECCCcHHHHHHHHHHHHhCCCCceEEEEhhhCCHHHHh--cCCEEEE
Confidence 56555 3334567778888765 33 34555554434455554 6999988
No 273
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=62.14 E-value=17 Score=24.41 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=30.0
Q ss_pred CeEEEE-ECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797 25 NPIIVI-DNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLI 74 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l~~~~~DgvIl 74 (133)
++++|+ ....+.+..+.+.+.+ .|. +++.+.++.+..++. ++|.||+
T Consensus 2 ~k~~I~Y~S~tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l~--~~d~ii~ 50 (164)
T 2bmv_A 2 GKIGIFFGTDSGNAEAIAEKISKAIGN-AEVVDVAKASKEQFN--SFTKVIL 50 (164)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHHT--TCSEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHcCC-cEEEecccCCHhHHh--hCCEEEE
Confidence 356655 3334567778777755 576 777765434455564 7999998
No 274
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=61.90 E-value=28 Score=25.64 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=51.0
Q ss_pred CCCCeEEEEECC-C---CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----ccCCCCEEEECCCCCCcCC-chHHHHHHH
Q 032797 22 NNKNPIIVIDNY-D---SFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQD-SGISLQTVL 92 (133)
Q Consensus 22 ~~~~~i~vid~~-~---~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~~~~DgvIl~GG~~~~~d-~~~~~~~i~ 92 (133)
....+|++.--. | --...+...|+..|+++.....+ .+.+++ ...++|.|.+|........ ....++.++
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~-vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD-VPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLL 199 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE-CCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHH
Confidence 344577666322 1 12334567789999999876544 344443 2348999999876321111 122334444
Q ss_pred HhCCCCCEEEEech-HHHHHHHhCCeee
Q 032797 93 ELGPTVPLFGVCMG-LQCIGEAFGDCAF 119 (133)
Q Consensus 93 ~~~~~~PvLGIClG-~QlLa~a~GG~v~ 119 (133)
+...++|++-=... -+-++...|+..+
T Consensus 200 ~~~~~~~v~vGG~~~~~~~~~~igad~~ 227 (258)
T 2i2x_B 200 ENGIKIPFACGGGAVNQDFVSQFALGVY 227 (258)
T ss_dssp TTTCCCCEEEESTTCCHHHHHTSTTEEE
T ss_pred hcCCCCcEEEECccCCHHHHHHcCCeEE
Confidence 43334665432211 2455666776554
No 275
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=61.32 E-value=7.8 Score=28.97 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=25.9
Q ss_pred HHHHHHhCCCeEEEEeCCC------CCHHHHccCCCCEEEEC
Q 032797 40 LCQYMGELGYHFEVYRNDE------LTVEELKRKNPRGVLIS 75 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~------~~~~~l~~~~~DgvIl~ 75 (133)
+.++|+..+++++.++.++ .+.+++. +||.||++
T Consensus 38 ~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~--~yDvIIl~ 77 (248)
T 3soz_A 38 LLSCLRQGNIDVDYMPAHIVQTRFPQTAEALA--CYDAIVIS 77 (248)
T ss_dssp HHHHHTTTTCEEEEEETTHHHHSCCCSHHHHH--TCSEEEEE
T ss_pred HHHHHhcCCceeEEeCchhhhhhCCCChHHHh--cCCEEEEc
Confidence 8889999999999988742 1234443 89999996
No 276
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=61.28 E-value=31 Score=25.40 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCCeEEEEEC--CCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCC--CCEEEECCC
Q 032797 23 NKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKN--PRGVLISPG 77 (133)
Q Consensus 23 ~~~~i~vid~--~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~--~DgvIl~GG 77 (133)
...+|.++-. .+.|... +.+.+++.|+++.+.... .+.+ .+...+ +||||+.+.
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~-~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTE-GSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECT-TCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCC-CCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 3456766632 2233222 455667789999887653 2221 122347 999999764
No 277
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=60.74 E-value=43 Score=23.89 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=31.8
Q ss_pred CCCCeEEEEECC-CCchHH----HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCCC
Q 032797 22 NNKNPIIVIDNY-DSFTYN----LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGP 78 (133)
Q Consensus 22 ~~~~~i~vid~~-~~~~~~----i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG~ 78 (133)
....+|.++-.. +.|... +.+.+++.|+++.+.... .+. +.+...++||+|+.+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASSE-ENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEECT-TCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 334567666432 223222 445566789998887653 222 12223579999998754
No 278
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=60.48 E-value=29 Score=25.27 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=43.2
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH--HHHc-cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV--EELK-RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTV 98 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~--~~l~-~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~ 98 (133)
.+-+|+++.........+.+.....|.....-++..-.+ ..+. -..+|.+|+. +|..+. ..+++. .-++
T Consensus 67 ~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~----Dp~~e~---~ai~EA~~l~I 139 (208)
T 1vi6_A 67 EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVN----DPAIDK---QAVSEATAVGI 139 (208)
T ss_dssp CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEES----CTTTTH---HHHHHHHHTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEE----CCCcch---hHHHHHHHhCC
Confidence 355788887655555556666667787665444321110 0111 1258888885 233332 345553 4579
Q ss_pred CEEEEec
Q 032797 99 PLFGVCM 105 (133)
Q Consensus 99 PvLGICl 105 (133)
|+.|+|-
T Consensus 140 PvIalvD 146 (208)
T 1vi6_A 140 PVVALCD 146 (208)
T ss_dssp CEEEEEC
T ss_pred CEEEEeC
Confidence 9999994
No 279
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=60.43 E-value=23 Score=24.97 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=51.3
Q ss_pred CCCCeEEEEEC---CCCchHHHHHHHHh---CCCeEE-EEeCCCCC-----------HHH---Hc--cCCCCEEEECCCC
Q 032797 22 NNKNPIIVIDN---YDSFTYNLCQYMGE---LGYHFE-VYRNDELT-----------VEE---LK--RKNPRGVLISPGP 78 (133)
Q Consensus 22 ~~~~~i~vid~---~~~~~~~i~~~l~~---~G~~~~-v~~~~~~~-----------~~~---l~--~~~~DgvIl~GG~ 78 (133)
..+|||++|.. ..|++..+.+++.+ .|.+++ ++...+.+ .++ +. -..+|++|+ +.|
T Consensus 4 M~~mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi-~tP 82 (199)
T 4hs4_A 4 TSPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVI-VTP 82 (199)
T ss_dssp -CCEEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEE-EEC
T ss_pred CCCCEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEE-EcC
Confidence 34578998853 34677777776654 366666 54321110 011 11 126899999 444
Q ss_pred C-CcCCchHH---HHHHHH----hCCCCCEEEEec--h----------HHHHHHHhCCeeeec
Q 032797 79 G-APQDSGIS---LQTVLE----LGPTVPLFGVCM--G----------LQCIGEAFGDCAFSA 121 (133)
Q Consensus 79 ~-~~~d~~~~---~~~i~~----~~~~~PvLGICl--G----------~QlLa~a~GG~v~~~ 121 (133)
- +-.-...+ ++++.. .-.+||++-|+- | +.-+...+|.++.+.
T Consensus 83 ~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g~~~a~~~Lr~il~~lg~~~v~~ 145 (199)
T 4hs4_A 83 EYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNR 145 (199)
T ss_dssp CBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSCSHHHHHHHHHHHHHTTCEECCS
T ss_pred ccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcccHHHHHHHHHHHHHcCCEEcCC
Confidence 3 11122333 344432 125788877765 2 122334788887753
No 280
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=60.15 E-value=16 Score=26.04 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=31.6
Q ss_pred CCCeEEEE--ECCCCchHH----HHHHHHhCCCeEEEEeCCCC-----CHHHHccCCCCEEEECCC
Q 032797 23 NKNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPG 77 (133)
Q Consensus 23 ~~~~i~vi--d~~~~~~~~----i~~~l~~~G~~~~v~~~~~~-----~~~~l~~~~~DgvIl~GG 77 (133)
...+|.++ +..+.|... +.+.+++.|+.+.+...++. ..+.+...++|||| .+.
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~ 68 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGII-IAQ 68 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEE-EES
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEE-ecC
Confidence 34567666 333334333 45667778999988765411 12234445899999 454
No 281
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=59.76 E-value=18 Score=25.11 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=38.0
Q ss_pred CCCCCeEEEEEC-CCCchHHHHHHHHh-CCCeEEEEeC-CCCCH---HHHccCCCCEEEECCCCCCcCC-chHHHHHHHH
Q 032797 21 KNNKNPIIVIDN-YDSFTYNLCQYMGE-LGYHFEVYRN-DELTV---EELKRKNPRGVLISPGPGAPQD-SGISLQTVLE 93 (133)
Q Consensus 21 ~~~~~~i~vid~-~~~~~~~i~~~l~~-~G~~~~v~~~-~~~~~---~~l~~~~~DgvIl~GG~~~~~d-~~~~~~~i~~ 93 (133)
+...++|+||-+ ..+++..+.+.+.+ .+.+..-+.. ++.+. +++. .+|+||+ |.|---.. ...+..++.+
T Consensus 3 ~~~~~kiliiy~S~~GnT~~lA~~ia~~l~~~~~~v~~~~~~~~~~~~~l~--~~D~ii~-gsP~y~g~~~~~~k~fld~ 79 (193)
T 3d7n_A 3 TNSSSNTVVVYHSGYGHTHRMAEAVAEGAEATLHAIDAEGNLSEDGWAALD--AADAIIF-GTPTYMGGPSWQFKKFADA 79 (193)
T ss_dssp ---CCCEEEEECCSSSHHHHHHHHHHHHHTCEEEECCTTSCCCHHHHHHHH--HCSEEEE-EEEEETTEECHHHHHHHHH
T ss_pred CCCCCEEEEEEECCChHHHHHHHHHHHHhhhcceEeeecCCCCHhHHHHHH--HCCEEEE-EeCccCCCccHHHHHHHHH
Confidence 344578888843 23456667666544 3332221111 11222 3343 6999999 54431111 2233344433
Q ss_pred h--------CCCCCEEEEec
Q 032797 94 L--------GPTVPLFGVCM 105 (133)
Q Consensus 94 ~--------~~~~PvLGICl 105 (133)
+ -.++|+..++-
T Consensus 80 ~~~~~~~~~l~gK~~~~f~s 99 (193)
T 3d7n_A 80 SSKPWFSAKWQDKVFGGFTN 99 (193)
T ss_dssp THHHHHTTTTTTCEEEEEEE
T ss_pred hhhhccccccCCCEEEEEEE
Confidence 1 25677765554
No 282
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=58.56 E-value=37 Score=24.67 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=32.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
+.+++++.|+++.+......+.+ .+...++||||+.+.. +.... +.++.+ +.++|++.+.
T Consensus 22 i~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~---~~~~~~~~~~iPvV~~~ 89 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSD--PTAVI---PTIKKALEMGIPVVTLD 89 (313)
T ss_dssp HHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSS--TTTTH---HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--hHHHH---HHHHHHHHCCCeEEEeC
Confidence 45566778999887642222221 2223589999997642 11111 223332 4568877654
No 283
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=58.15 E-value=27 Score=23.27 Aligned_cols=78 Identities=12% Similarity=-0.016 Sum_probs=41.4
Q ss_pred CeEEEEE-CCCCchHHHHHHHHh-CC-CeEEEEeCCCCCHHHHccCCCCEEEECCCCC-CcCCc-hHHHHHHHHh----C
Q 032797 25 NPIIVID-NYDSFTYNLCQYMGE-LG-YHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDS-GISLQTVLEL----G 95 (133)
Q Consensus 25 ~~i~vid-~~~~~~~~i~~~l~~-~G-~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~-~~~d~-~~~~~~i~~~----~ 95 (133)
|+|+|+- ...+.+..+.+.+.+ .+ .++++++....+.+++. ++|.||+ |.|- .-... ..+.+++..+ -
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~~v~~~~~~~~~~~~l~--~~d~ii~-g~p~y~~g~~p~~~~~fl~~l~~~~l 78 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLN--DYQYLII-GCPTLNIGELQSDWEGLYSELDDVDF 78 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEETTTCCGGGGG--GCSEEEE-EEEEETTTEECHHHHHHHTTGGGCCC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcCCcEEEEcccCCHHHHh--hCCEEEE-EEeeCCCCcCCHHHHHHHHHhhhcCc
Confidence 5677663 233556667776654 22 25667776544445554 6999998 4332 11111 2233344432 1
Q ss_pred CCCCEEEEec
Q 032797 96 PTVPLFGVCM 105 (133)
Q Consensus 96 ~~~PvLGICl 105 (133)
.++++.-+|.
T Consensus 79 ~~k~~~~f~t 88 (169)
T 1obo_A 79 NGKLVAYFGT 88 (169)
T ss_dssp TTCEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 5677776665
No 284
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=57.42 E-value=17 Score=24.65 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=45.8
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (133)
.+++|+|+|........+...|+..|+.+....... +.+ ...+|.+|+-=. -|...+.+.+.++......|++-
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~---~al-~~~~dlvl~D~~--mp~~~g~l~~~~~~~~~~~~ii~ 84 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPP---EAF-DVPVDVVFTSIF--QNRHHDEIAALLAAGTPRTTLVA 84 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCC---SSC-SSCCSEEEEECC--SSTHHHHHHHHHHHSCTTCEEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCch---hhC-CCCCCEEEEeCC--CCccchHHHHHHhccCCCCCEEE
Confidence 457899998765666677888888899877554321 122 246898777211 12212333344444336788887
Q ss_pred Eec
Q 032797 103 VCM 105 (133)
Q Consensus 103 ICl 105 (133)
+.-
T Consensus 85 lt~ 87 (196)
T 1qo0_D 85 LVE 87 (196)
T ss_dssp EEC
T ss_pred EEc
Confidence 764
No 285
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=57.11 E-value=50 Score=23.58 Aligned_cols=76 Identities=9% Similarity=0.102 Sum_probs=38.7
Q ss_pred CCeEEEEE--CCCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHH
Q 032797 24 KNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQT 90 (133)
Q Consensus 24 ~~~i~vid--~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~ 90 (133)
..+|.++- ..+.|... +.+.+++.|+++.++.....+.+ .+...++||+|+.+. +.......
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~-----~~~~~~~~ 78 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN-----DANVLEPV 78 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS-----CHHHHHHH
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC-----ChHHHHHH
Confidence 34666663 22233222 45566778988875432212221 222358999999764 22222233
Q ss_pred HHHh-CCCCCEEEEe
Q 032797 91 VLEL-GPTVPLFGVC 104 (133)
Q Consensus 91 i~~~-~~~~PvLGIC 104 (133)
++.+ +.++|+.-+.
T Consensus 79 ~~~~~~~~ipvV~~~ 93 (303)
T 3d02_A 79 FKKARDAGIVVLTNE 93 (303)
T ss_dssp HHHHHHTTCEEEEES
T ss_pred HHHHHHCCCeEEEEe
Confidence 3333 3467766553
No 286
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=57.07 E-value=49 Score=23.42 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=23.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+++.+..... +. +.+...++||+|+.+.
T Consensus 23 i~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 23 AQKEADKLGYNLVVLDSQN-NPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp HHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred HHHHHHHcCcEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4556677899988776432 21 1233357999999753
No 287
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=56.90 E-value=51 Score=23.58 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=34.9
Q ss_pred HHHHHHhCCC-eEEEEeCCCCCH-------HHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEec
Q 032797 40 LCQYMGELGY-HFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (133)
Q Consensus 40 i~~~l~~~G~-~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGICl 105 (133)
+.+.+++.|+ ++.+..... +. +.+...++||+|+.+.. .....+.++.+ +.++|+.-+..
T Consensus 24 i~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~vdgiii~~~~-----~~~~~~~~~~~~~~~iPvV~~~~ 92 (309)
T 2fvy_A 24 IEQDAKAAPDVQLLMNDSQN-DQSKQNDQIDVLLAKGVKALAINLVD-----PAAAGTVIEKARGQNVPVVFFNK 92 (309)
T ss_dssp HHHHHHTCTTEEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCSS-----GGGHHHHHHHHHTTTCCEEEESS
T ss_pred HHHHHHhcCCeEEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEeCCC-----cchhHHHHHHHHHCCCcEEEecC
Confidence 4556677898 888776532 22 12233589999997642 11122334443 56789887643
No 288
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=56.62 E-value=19 Score=24.63 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=48.8
Q ss_pred CCCeEEEEEC-CCCc---hHHHHHHHHhCCCeEEEEeCCCCCHHHHc----cCCCCEEEECCCCCCcC-CchHHHHHHHH
Q 032797 23 NKNPIIVIDN-YDSF---TYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQTVLE 93 (133)
Q Consensus 23 ~~~~i~vid~-~~~~---~~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~~~~DgvIl~GG~~~~~-d~~~~~~~i~~ 93 (133)
...+|++.-- +|.. ...+...|+..|+++.....+ .+.+++. ..++|.|.+|....... ......+.+++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~-~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR-QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB-CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHh
Confidence 4456665521 2222 234566788999999866554 4555542 35899999977532110 11223445555
Q ss_pred hC-CCCCEEEEechH---HHH--HHHhCCe
Q 032797 94 LG-PTVPLFGVCMGL---QCI--GEAFGDC 117 (133)
Q Consensus 94 ~~-~~~PvLGIClG~---QlL--a~a~GG~ 117 (133)
.. .++|++. -|. +-. ....|..
T Consensus 96 ~g~~~i~v~v--GG~~~~~~~~~l~~~G~d 123 (161)
T 2yxb_A 96 LGADDIPVVL--GGTIPIPDLEPLRSLGIR 123 (161)
T ss_dssp TTCTTSCEEE--EECCCHHHHHHHHHTTCC
T ss_pred cCCCCCEEEE--eCCCchhcHHHHHHCCCc
Confidence 32 3566542 242 222 3467775
No 289
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=56.38 E-value=52 Score=23.52 Aligned_cols=76 Identities=11% Similarity=0.154 Sum_probs=42.1
Q ss_pred CCCCeEEEEEC--CCCchHH----HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCCCCCcCCchHHH
Q 032797 22 NNKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISL 88 (133)
Q Consensus 22 ~~~~~i~vid~--~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~ 88 (133)
....+|.++-. .+.|... +.+.+++.|+++.+..... +. +.+...++||+|+.+... .+ .
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgii~~~~~~--~~-~--- 90 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSED-QPDNEMRCIEHLLQRQVDAIIVSTSLP--PE-H--- 90 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCSSC--TT-C---
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCC--Cc-H---
Confidence 44567777632 2233322 4556677899998876532 22 122335899999977532 11 1
Q ss_pred HHHHHh-CCCCCEEEEe
Q 032797 89 QTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 89 ~~i~~~-~~~~PvLGIC 104 (133)
+.++.+ +.++|+.-+-
T Consensus 91 ~~~~~~~~~~iPvV~~~ 107 (293)
T 2iks_A 91 PFYQRWANDPFPIVALD 107 (293)
T ss_dssp HHHHTTTTSSSCEEEEE
T ss_pred HHHHHHHhCCCCEEEEC
Confidence 123333 4567876654
No 290
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=56.34 E-value=27 Score=30.25 Aligned_cols=80 Identities=9% Similarity=0.058 Sum_probs=50.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCc------hHHHHHHHHh-CCCCCEEEEec-------
Q 032797 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GPTVPLFGVCM------- 105 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~------~~~~~~i~~~-~~~~PvLGICl------- 105 (133)
+.++|...+++++.++.++....+.. .++|.||..|-.++.... ....+.||++ .++--++||.-
T Consensus 473 ilEALsg~~~dV~FIsfdDI~e~e~L-~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~ 551 (759)
T 2zuv_A 473 ILESLSGMRVNVRFISFDDVLAHGID-SDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRF 551 (759)
T ss_dssp HHHHHHTSSSEEEEEEHHHHHHHCCC-TTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEE
T ss_pred HHHHHhcCCCceEEecHHHhcccccc-ccCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccc
Confidence 78899999999999886522111221 489999976634333221 2346778874 55666666642
Q ss_pred h----HHHHHHHhCCeeeec
Q 032797 106 G----LQCIGEAFGDCAFSA 121 (133)
Q Consensus 106 G----~QlLa~a~GG~v~~~ 121 (133)
| +| |+..||-.....
T Consensus 552 g~gryFq-LADVLGVd~e~g 570 (759)
T 2zuv_A 552 QTGRFFQ-LADVIGVDEERY 570 (759)
T ss_dssp ETTEEET-THHHHSEEECCS
T ss_pred cCccccc-HHhhcCcccccC
Confidence 1 35 788888766543
No 291
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=56.06 E-value=5.6 Score=29.48 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=25.9
Q ss_pred CCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEechH
Q 032797 67 KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG~ 107 (133)
.++|.+|..|| ++.+.+..+.+ . ++|++||=.|.
T Consensus 40 ~~~D~vv~~GG------DGTll~~a~~~~~-~~PilGIn~G~ 74 (258)
T 1yt5_A 40 VTADLIVVVGG------DGTVLKAAKKAAD-GTPMVGFKAGR 74 (258)
T ss_dssp BCCSEEEEEEC------HHHHHHHHTTBCT-TCEEEEEESSS
T ss_pred CCCCEEEEEeC------cHHHHHHHHHhCC-CCCEEEEECCC
Confidence 47999999998 44455666665 5 89999998774
No 292
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=55.81 E-value=52 Score=23.32 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=40.3
Q ss_pred CCCeEEEEEC--CCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHH
Q 032797 23 NKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 23 ~~~~i~vid~--~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
...+|.++-. .+.|... +.+.+++.|+++.+.... .+.+ .+...++||+|+.+... .....+
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~~----~~~~~~ 80 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAW-NNLEKQRAYLSMMAQKRVDGLLVMCSEY----PEPLLA 80 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSCC----CHHHHH
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcCC-CChHHHHHHHHHHHhCCCCEEEEEeccC----CHHHHH
Confidence 3456776643 2233222 445666789998887653 2222 22335899999976432 122333
Q ss_pred HHHHhCCCCCEEEEe
Q 032797 90 TVLELGPTVPLFGVC 104 (133)
Q Consensus 90 ~i~~~~~~~PvLGIC 104 (133)
.+.+ ..++|+..+-
T Consensus 81 ~l~~-~~~iPvV~~~ 94 (289)
T 1dbq_A 81 MLEE-YRHIPMVVMD 94 (289)
T ss_dssp HHHH-TTTSCEEEEE
T ss_pred HHHh-ccCCCEEEEc
Confidence 3432 2467876654
No 293
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=55.72 E-value=63 Score=24.30 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=43.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC------------------HHHHccCCCCEEEECCCCCCcCCch
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT------------------VEELKRKNPRGVLISPGPGAPQDSG 85 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~------------------~~~l~~~~~DgvIl~GG~~~~~d~~ 85 (133)
.++|.+|.-+.+-...+.+.|.+.|+++......... .+.+...++|.||+|+|-. .+..
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~--~~~p 81 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAK--RGMD 81 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCC--TTCH
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcC--CCCH
Confidence 3567777665444434667777777777766532111 1111102589999998842 2221
Q ss_pred H-------------HHHHHHH-hCCCCCEEEEec
Q 032797 86 I-------------SLQTVLE-LGPTVPLFGVCM 105 (133)
Q Consensus 86 ~-------------~~~~i~~-~~~~~PvLGICl 105 (133)
. ..+++.+ +.+++|++||.-
T Consensus 82 ~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTG 115 (326)
T 3eag_A 82 VVEAILNLGLPYISGPQWLSENVLHHHWVLGVAG 115 (326)
T ss_dssp HHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEES
T ss_pred HHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEEC
Confidence 1 1344443 334578888873
No 294
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=55.67 E-value=58 Score=23.82 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=29.2
Q ss_pred CeEEEEEC--CCCchH----HHHHHHHhCCCeEEEE-eCCCCCH-------HHHccCCCCEEEECCC
Q 032797 25 NPIIVIDN--YDSFTY----NLCQYMGELGYHFEVY-RNDELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 25 ~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~-~~~~~~~-------~~l~~~~~DgvIl~GG 77 (133)
.+|.++-. .+.|.. .+.+.+++.|+++.+. +.. .+. +.+...++|+||+.+.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~-~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTE-PSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSS-CCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCC-CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 46766632 223322 2455667789988775 232 222 2233458999999653
No 295
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=55.56 E-value=53 Score=26.81 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=35.8
Q ss_pred CCCCEEEECCCCCCcCCc--------hHH--HHHHHH-h-CCCCCEE---EEechHHHH-HHHhCCeeee
Q 032797 67 KNPRGVLISPGPGAPQDS--------GIS--LQTVLE-L-GPTVPLF---GVCMGLQCI-GEAFGDCAFS 120 (133)
Q Consensus 67 ~~~DgvIl~GG~~~~~d~--------~~~--~~~i~~-~-~~~~PvL---GIClG~QlL-a~a~GG~v~~ 120 (133)
..+|+|++..|+++.... ..+ +..+.+ . +.++|++ ||..+-++. +.++|+...-
T Consensus 317 aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~ 386 (511)
T 3usb_A 317 AGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVM 386 (511)
T ss_dssp HTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred hCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhe
Confidence 479999997777764321 111 222222 2 3479999 899999988 7789987553
No 296
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=55.25 E-value=7.5 Score=30.96 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=25.6
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCC-CEEEEechH
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTV-PLFGVCMGL 107 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~-PvLGIClG~ 107 (133)
++|.+|..|| ++.++...+.+ ..++ |+|||=.|.
T Consensus 114 ~~DlVIvlGG------DGTlL~aa~~~~~~~vpPiLGIN~G~ 149 (388)
T 3afo_A 114 RTDLLVTLGG------DGTILHGVSMFGNTQVPPVLAFALGT 149 (388)
T ss_dssp HCSEEEEEES------HHHHHHHHHTTTTSCCCCEEEEECSS
T ss_pred CCCEEEEEeC------cHHHHHHHHHhcccCCCeEEEEECCC
Confidence 5899999998 44456666665 4577 899998874
No 297
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=54.60 E-value=4.7 Score=28.42 Aligned_cols=79 Identities=10% Similarity=0.142 Sum_probs=42.3
Q ss_pred CeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G-~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (133)
++|+|+|........+...|...| +.+...-.+... .+.+....+|.+|+--. -|...+ ...+.+++.....|++
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVR--LPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECSE--ETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcCCCEEEEeCC--CCCCCHHHHHHHHHHhCCCCcEE
Confidence 589999875555566778888776 553322221111 11222336998887211 122122 2345555545578888
Q ss_pred EEec
Q 032797 102 GVCM 105 (133)
Q Consensus 102 GICl 105 (133)
-+.-
T Consensus 80 ~lt~ 83 (225)
T 3c3w_A 80 ILTS 83 (225)
T ss_dssp EGGG
T ss_pred EEEC
Confidence 7653
No 298
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=54.57 E-value=7 Score=30.42 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=41.6
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
++|+|+|-.......+.+.|+..|+.+..........+.+....+|.|++== .-|...+ .+.+.+++.....|++-+
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllDi--~mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDV--WMPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBCCSEEEEES--EETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 4789998654555667788888898875543210011223334688776510 0011111 234555554455676665
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
.
T Consensus 79 T 79 (368)
T 3dzd_A 79 T 79 (368)
T ss_dssp E
T ss_pred e
Confidence 4
No 299
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=54.00 E-value=56 Score=23.14 Aligned_cols=77 Identities=10% Similarity=0.111 Sum_probs=40.5
Q ss_pred CCCCeEEEEE----CCCCchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchH
Q 032797 22 NNKNPIIVID----NYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 22 ~~~~~i~vid----~~~~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
....+|.++- ..+.|... +.+.+++.|+++.+.... .+.+ .+...++||+|+.+... ...
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~~----~~~ 91 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK-HSAEEERQAIQYLLDLRCDAIMIYPRFL----SVD 91 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCT-TSHHHHHHHHHHHHHTTCSEEEEECSSS----CHH
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEecCCC----ChH
Confidence 3456777663 23344333 455667789998877543 2221 22235899999976421 122
Q ss_pred HHHHHHHhCCCCCEEEEe
Q 032797 87 SLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 87 ~~~~i~~~~~~~PvLGIC 104 (133)
..+.+.+ ..++|++-+-
T Consensus 92 ~~~~l~~-~~~iPvV~~~ 108 (296)
T 3brq_A 92 EIDDIID-AHSQPIMVLN 108 (296)
T ss_dssp HHHHHHH-TCSSCEEEES
T ss_pred HHHHHHh-cCCCCEEEEc
Confidence 2222322 1578887664
No 300
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=53.89 E-value=85 Score=25.21 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=37.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC-HHHHc--------------cCCCCEEEECCCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELK--------------RKNPRGVLISPGP 78 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~-~~~l~--------------~~~~DgvIl~GG~ 78 (133)
....+|+||.-+.+-...+.+.|.+.|+++......... .+.+. -.++|.||+|+|-
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi 91 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAI 91 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTS
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCC
Confidence 344689999887666656889999999998876532111 01111 0258999999874
No 301
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=53.88 E-value=46 Score=26.13 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=54.2
Q ss_pred CCeEEEEECCCCchH---HHHHHHHhC--CCeEEEEeCCCCCHHH---HccCCCCEEEECCCCCCcCCc-------hHHH
Q 032797 24 KNPIIVIDNYDSFTY---NLCQYMGEL--GYHFEVYRNDELTVEE---LKRKNPRGVLISPGPGAPQDS-------GISL 88 (133)
Q Consensus 24 ~~~i~vid~~~~~~~---~i~~~l~~~--G~~~~v~~~~~~~~~~---l~~~~~DgvIl~GG~~~~~d~-------~~~~ 88 (133)
+..++.+|...++.. ...+++++. +..+..-.. .+.++ +....+|+|+++.|+|...+. ....
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V--~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l 189 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNV--ATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPML 189 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEE--CSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHH
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCc--CCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHH
Confidence 456888875334433 355667664 554443112 23333 333589999997676643110 0134
Q ss_pred HHHHHh-CCCCCEE---EEechHHHH-HHHhCCeeee
Q 032797 89 QTVLEL-GPTVPLF---GVCMGLQCI-GEAFGDCAFS 120 (133)
Q Consensus 89 ~~i~~~-~~~~PvL---GIClG~QlL-a~a~GG~v~~ 120 (133)
..|.+. +...||+ ||..|-++. +.++|+...-
T Consensus 190 ~aI~~~~~~~~PVIAdGGI~~~~di~kALa~GAd~V~ 226 (361)
T 3r2g_A 190 TCIQDCSRADRSIVADGGIKTSGDIVKALAFGADFVM 226 (361)
T ss_dssp HHHHHHTTSSSEEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 556654 3223999 788788777 6688987654
No 302
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=52.99 E-value=23 Score=26.71 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=38.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC---HHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~---~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (133)
+-+|+++.........+.+...+.|..+..-++..-. .....-..+|.+|+.. |..+ ...|++. .-++|
T Consensus 104 ~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~D----p~~e---~~AI~EA~~lgIP 176 (253)
T 3bch_A 104 PADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTD----PRAD---HQPLTEASYVNLP 176 (253)
T ss_dssp GGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESC----TTTT---HHHHHHHHHTTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEEC----CCcc---chHHHHHHHhCCC
Confidence 3467777654333334555555667765543332111 1001113588888842 3222 2345553 56799
Q ss_pred EEEEe
Q 032797 100 LFGVC 104 (133)
Q Consensus 100 vLGIC 104 (133)
+.|||
T Consensus 177 vIalv 181 (253)
T 3bch_A 177 TIALC 181 (253)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99998
No 303
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=51.88 E-value=37 Score=23.94 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=29.7
Q ss_pred HHHHHHhCCCeEEEEeCCC-C-----CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 40 LCQYMGELGYHFEVYRNDE-L-----TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~-~-----~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
+.+.+++.|+++.+..... . ..+.+...++||+|+.+...+ . +.++.+ +.++|+.-+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~---~~~~~~~~~~iPvV~~~ 85 (276)
T 2h0a_A 21 IEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLT----E---RFEEGRLPTERPVVLVD 85 (276)
T ss_dssp HHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC-------------CCSCSSCEEEES
T ss_pred HHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCC----H---HHHHHHhhcCCCEEEEe
Confidence 4556677899887764321 1 122233357999999765321 1 233443 4678887764
No 304
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=51.86 E-value=19 Score=22.64 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=39.3
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (133)
.+|+|+|........+...|+.. +.+..........+.+....+|.+|+-=. -|...+ ...+.+++.....|++-+
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEWVQVIICDQR--MPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSCEEEEEEESC--CSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 47899986544455566677654 65543321100112223346888877211 122222 344556554456787766
Q ss_pred e
Q 032797 104 C 104 (133)
Q Consensus 104 C 104 (133)
.
T Consensus 79 s 79 (139)
T 2jk1_A 79 T 79 (139)
T ss_dssp E
T ss_pred e
Confidence 4
No 305
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=51.74 E-value=11 Score=27.34 Aligned_cols=94 Identities=12% Similarity=0.038 Sum_probs=49.0
Q ss_pred ccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CHHHH----cc--CCCCEEEECCCCCCcCCchHHHH
Q 032797 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEEL----KR--KNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~---~~~~l----~~--~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
+.+..+++|+|.-.. . ...+.+.|++.|+++..+|.-.. +.+++ .. ..||.||++-..+ ...+.+
T Consensus 3 ~~~l~g~~vlvtr~~-~-~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~a----V~~~~~ 76 (261)
T 1wcw_A 3 RLEEDAVRVAYAGLR-R-KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVG----VRDLLE 76 (261)
T ss_dssp -----CCEEEECCST-T-HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHH----HHHHHH
T ss_pred CCCCCCCEEEEeCCC-c-hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHHH----HHHHHH
Confidence 355678898888644 3 56788999999998865543111 11221 11 2699999965422 222222
Q ss_pred HHHHhC-------CCCCEEEEechHHHHHHHhCCee
Q 032797 90 TVLELG-------PTVPLFGVCMGLQCIGEAFGDCA 118 (133)
Q Consensus 90 ~i~~~~-------~~~PvLGIClG~QlLa~a~GG~v 118 (133)
.+.+.. .+.+++.|--+-.-..+.+|-++
T Consensus 77 ~l~~~~~~~~~~l~~~~i~avG~~Ta~~l~~~G~~~ 112 (261)
T 1wcw_A 77 AGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPP 112 (261)
T ss_dssp HHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCC
T ss_pred HHHHhCchHHHHhcCCeEEEECHHHHHHHHHcCCCC
Confidence 222211 13566665555544445667654
No 306
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=51.30 E-value=6.9 Score=29.15 Aligned_cols=103 Identities=10% Similarity=-0.003 Sum_probs=50.1
Q ss_pred cccccccccccccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC------CCCCHHH-Hcc--CCCCEEEECCCC
Q 032797 8 PISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN------DELTVEE-LKR--KNPRGVLISPGP 78 (133)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~------~~~~~~~-l~~--~~~DgvIl~GG~ 78 (133)
+...+||.+ .+..+++|+|.-.. . ...+.+.|++.|+++..+|. +....+. +.. ..||.||++-..
T Consensus 20 ~~~~~w~e~---~pL~G~~VlvtR~~-~-~~~l~~~L~~~G~~v~~~P~i~i~~~~~~~l~~~l~~l~~~~d~lifTS~n 94 (286)
T 3d8t_A 20 STENLYFQG---IDPFTMRIAYAGLR-R-KEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGV 94 (286)
T ss_dssp ----------------CCEEEECCSS-C-HHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHH
T ss_pred CccCccccC---CCCCCCEEEEeCCC-c-hHHHHHHHHHCCCeEEEeeeEEEecCCHHHHHHHHHhhccCCCEEEEECHH
Confidence 344567754 45778899888644 3 56788999999998765432 1111211 111 269999996542
Q ss_pred CCcCCchHHHHHHHHhC-------CCCCEEEEechHHHHHHHhCCeee
Q 032797 79 GAPQDSGISLQTVLELG-------PTVPLFGVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 79 ~~~~d~~~~~~~i~~~~-------~~~PvLGIClG~QlLa~a~GG~v~ 119 (133)
+ ...+.+.+.+.. .+.+++.|--.-.-..+.+|-++.
T Consensus 95 a----V~~~~~~l~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~G~~~~ 138 (286)
T 3d8t_A 95 G----VRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPH 138 (286)
T ss_dssp H----HHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCS
T ss_pred H----HHHHHHHHHHcCchHHHHhcCCeEEEECHHHHHHHHHcCCCcc
Confidence 1 222222222211 135676666555445556776543
No 307
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=50.95 E-value=78 Score=23.97 Aligned_cols=81 Identities=7% Similarity=-0.011 Sum_probs=42.8
Q ss_pred CCeEEEEEC-CCCchHHHHH----HHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEECCCCCCcCCchHHHHHHHH---
Q 032797 24 KNPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLE--- 93 (133)
Q Consensus 24 ~~~i~vid~-~~~~~~~i~~----~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl~GG~~~~~d~~~~~~~i~~--- 93 (133)
.++++|+-. ..+.+..+.+ .+.+.|.+++++.....+..++.. .++|++|+.-+...-.....+..++.+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~~~~~~~~~~~l~~l~~ 331 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKG 331 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCCCchHHHHHHHHHhhh
Confidence 467777743 2234544444 455578888888765444444311 379999993322222223334444444
Q ss_pred h-CCCCCEEEEe
Q 032797 94 L-GPTVPLFGVC 104 (133)
Q Consensus 94 ~-~~~~PvLGIC 104 (133)
. -.++++.-+|
T Consensus 332 ~~l~~k~~~~f~ 343 (402)
T 1e5d_A 332 LRPQNKIGGAFG 343 (402)
T ss_dssp TCCCSCEEEEEE
T ss_pred cccCCCEEEEEE
Confidence 2 2566665443
No 308
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=50.81 E-value=55 Score=22.14 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=20.1
Q ss_pred CeEEEEECC----CCchHHHHHH----HHhCC--CeEEEEeCC
Q 032797 25 NPIIVIDNY----DSFTYNLCQY----MGELG--YHFEVYRND 57 (133)
Q Consensus 25 ~~i~vid~~----~~~~~~i~~~----l~~~G--~~~~v~~~~ 57 (133)
|+|++|..- .+++..+.+. +++.| .+++++...
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 578888542 2566655544 45544 888887653
No 309
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=50.29 E-value=29 Score=25.04 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=50.9
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccC-CCCEEEECCCCCCcCCch-HHHHHHHHh--CCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT 97 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~-~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~ 97 (133)
...++|+|+|-.......+...|+..|+.+..........+.+... .+|.+++ -= .-|...+ .+.+.+++. ...
T Consensus 122 ~~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvll-D~-~mP~~dG~~l~~~lr~~~~~~~ 199 (259)
T 3luf_A 122 NQQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLV-DY-YMPEIDGISLVRMLRERYSKQQ 199 (259)
T ss_dssp HTTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEE-CS-CCSSSCHHHHHHHHHHHCCTTT
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEE-cC-CCCCCCHHHHHHHHHhccCCCC
Confidence 3567999998654445567777888888776543211111222222 3787776 11 1233333 345666664 346
Q ss_pred CCEEEEech----HHHHHHHhCCe
Q 032797 98 VPLFGVCMG----LQCIGEAFGDC 117 (133)
Q Consensus 98 ~PvLGIClG----~QlLa~a~GG~ 117 (133)
+|++.+.-- ...-+...|+.
T Consensus 200 ~~ii~~s~~~~~~~~~~a~~~Ga~ 223 (259)
T 3luf_A 200 LAIIGISVSDKRGLSARYLKQGAN 223 (259)
T ss_dssp SEEEEEECSSSSSHHHHHHHTTCS
T ss_pred CeEEEEEccCCHHHHHHHHhcChh
Confidence 888876531 23334455654
No 310
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=50.04 E-value=74 Score=23.40 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=42.2
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHH
Q 032797 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISL 88 (133)
Q Consensus 22 ~~~~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~ 88 (133)
....+|.++-. .+.|.. .+.+.+++.|+.+.+...+ .+.+ .+...++||+|+.+... .....
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~----~~~~~ 130 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAW-NNLEKQRAYLSMMAQKRVDGLLVMCSEY----PEPLL 130 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCSCC----CHHHH
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHcCCCCEEEEeCCCC----ChHHH
Confidence 44457777732 223322 2455667789999887653 2222 22235899999976432 12223
Q ss_pred HHHHHhCCCCCEEEEe
Q 032797 89 QTVLELGPTVPLFGVC 104 (133)
Q Consensus 89 ~~i~~~~~~~PvLGIC 104 (133)
+.+.+ ..++|+.-+.
T Consensus 131 ~~l~~-~~~iPvV~~~ 145 (340)
T 1qpz_A 131 AMLEE-YRHIPMVVMD 145 (340)
T ss_dssp HHHHT-TTTSCEEEEE
T ss_pred HHHHh-hCCCCEEEEe
Confidence 33332 2468877654
No 311
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=49.84 E-value=7.9 Score=28.23 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCEEEEechHHHHHHH
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIGEA 113 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~--~~~~~PvLGIClG~QlLa~a 113 (133)
+.|+|.++-|||+..-..--....+. +..++|++||+. ++.++..
T Consensus 66 dld~Iav~~GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs~-l~a~a~~ 112 (218)
T 2a6a_A 66 DLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNS-FEMTAKS 112 (218)
T ss_dssp GCSEEEEECCSSCHHHHHHHHHHHHHHHGGGTCCEEEECH-HHHHHHT
T ss_pred HCCEEEEEcCCCchHhHHHHHHHHHHHHHHcCCCEEEeCc-HHHHHhh
Confidence 68999999999976432211222333 356799999996 5555554
No 312
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=48.44 E-value=26 Score=27.00 Aligned_cols=79 Identities=18% Similarity=0.279 Sum_probs=42.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCC-HHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~-G~~~~v~~~~~~~-~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (133)
.++|+|+|....+...+.+.|++. |+++.....+... .+.+....+|.+++-=. .|...+ ...+.+++... .|+
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~pDlVllDi~--mp~~dGlell~~l~~~~p-~pV 79 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVE--MPRMDGLDFLEKLMRLRP-MPV 79 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECC--CSSSCHHHHHHHHHHSSC-CCE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccCCCEEEEECC--CCCCCHHHHHHHHHhcCC-CcE
Confidence 468999986544555677788875 7664322222111 12223347998887211 122222 23445554333 899
Q ss_pred EEEec
Q 032797 101 FGVCM 105 (133)
Q Consensus 101 LGICl 105 (133)
+-+.-
T Consensus 80 IvlS~ 84 (349)
T 1a2o_A 80 VMVSS 84 (349)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88764
No 313
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=47.91 E-value=70 Score=23.99 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=38.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~---~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (133)
+-+|++|.........+.+.....|..+..-++..- +...-.-..+|.+|++. |..+ ...|++. .-++|
T Consensus 70 ~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~D----p~~d---~~ai~EA~~l~IP 142 (252)
T 3u5c_A 70 PEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTD----PRSD---AQAIKEASYVNIP 142 (252)
T ss_dssp GGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESC----TTTT---HHHHHHHHTTTCC
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeC----Cccc---hHHHHHHHHcCCC
Confidence 346777765433333455555567776554333110 01011112578888843 3322 2345553 66899
Q ss_pred EEEEe
Q 032797 100 LFGVC 104 (133)
Q Consensus 100 vLGIC 104 (133)
+.|+|
T Consensus 143 ~Ial~ 147 (252)
T 3u5c_A 143 VIALT 147 (252)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99999
No 314
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=47.53 E-value=15 Score=28.73 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=43.9
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCEE
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF 101 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~~--~~~~PvL 101 (133)
.+|+|+|........+...|+..|+.+..........+.+....+|.+++-= .-|...+ ...+.+++. ...+|++
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~~dlvllD~--~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDV--MMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEES--CCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcC--CCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 4799998766666678888888888766543210011222223688777611 1222222 344555553 2467887
Q ss_pred EEe
Q 032797 102 GVC 104 (133)
Q Consensus 102 GIC 104 (133)
-+-
T Consensus 80 ~lt 82 (459)
T 1w25_A 80 LIT 82 (459)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 315
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=47.18 E-value=35 Score=23.00 Aligned_cols=36 Identities=6% Similarity=-0.263 Sum_probs=21.3
Q ss_pred CCCEEEECCCCCCcCC-chHHHHHHHHh-CCCCCEEEEe
Q 032797 68 NPRGVLISPGPGAPQD-SGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d-~~~~~~~i~~~-~~~~PvLGIC 104 (133)
+||.||+ |.|---.. ...+..++++. -.++++.-+|
T Consensus 78 ~yd~iil-G~P~~~g~~~~~~~~fl~~~~l~gk~v~~f~ 115 (162)
T 3klb_A 78 KYEVLFV-GFPVWWYIAPTIINTFLESYDFAGKIVVPFA 115 (162)
T ss_dssp GCSEEEE-EEECBTTBCCHHHHHHHHTSCCTTCEEEEEE
T ss_pred hCCEEEE-EcccccCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 6999999 54432122 23355677764 3567776665
No 316
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=46.84 E-value=17 Score=26.58 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=37.0
Q ss_pred ccccccccccccccccccCCCCCeEEEE-ECCCCchHHHHHHHHh---CCCeEEEEeCCCCCHHHHccCCCCEEEE
Q 032797 3 VAEAVPISKSLYLDDKKSKNNKNPIIVI-DNYDSFTYNLCQYMGE---LGYHFEVYRNDELTVEELKRKNPRGVLI 74 (133)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~i~vi-d~~~~~~~~i~~~l~~---~G~~~~v~~~~~~~~~~l~~~~~DgvIl 74 (133)
+|.|+.+|...+ -..+ ...++|+|+ ....+.+..+.+.|.+ .|+++.+...++.+.+++. .++.+|+
T Consensus 22 ~~~av~~~~~l~-~~~~--~~~~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~~~l~--~~~~vI~ 92 (219)
T 3hr4_A 22 LVKAVLFACMLM-RKTM--ASRVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRLSCLE--EERLLLV 92 (219)
T ss_dssp HHHHHHHHHHHH-HHHH--HTSCEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCGGGGG--TCSEEEE
T ss_pred HHHHHHHHHHHH-HHHH--hcCCcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCHhHhc--cCCeEEE
Confidence 455666655432 1222 233455555 4444556666555433 5888888876544555664 5777776
No 317
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=46.74 E-value=75 Score=22.55 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=23.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+.+.+..... +. +.+...++||+|+.+.
T Consensus 23 i~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 23 AEEKAKELGYKIIVEDSQN-DSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp HHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHhcCcEEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4456677899988776532 22 1122358999999753
No 318
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=46.64 E-value=77 Score=22.62 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=32.4
Q ss_pred HHHHHHhCCCeEEEEe--CCCCCH-------HHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 40 LCQYMGELGYHFEVYR--NDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~--~~~~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
+.+.+++.|+.+.+.. .. .+. +.+...++||+|+.+.. ........+.++ +.++|+.-+-
T Consensus 23 i~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vdgiIi~~~~--~~~~~~~~~~~~--~~~iPvV~~~ 91 (288)
T 1gud_A 23 IEDEAKTLGVSVDIFASPSE-GDFQSQLQLFEDLSNKNYKGIAFAPLS--SVNLVMPVARAW--KKGIYLVNLD 91 (288)
T ss_dssp HHHHHHHHTCCEEEEECSST-TCHHHHHHHHHHHHTSSEEEEEECCSS--SSTTHHHHHHHH--HTTCEEEEES
T ss_pred HHHHHHHcCCEEEEeCCCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC--hHHHHHHHHHHH--HCCCeEEEEC
Confidence 4556677899988776 32 222 12233579999997642 111112222222 3467876553
No 319
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=45.79 E-value=90 Score=23.15 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=30.2
Q ss_pred CCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCC
Q 032797 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (133)
Q Consensus 23 ~~~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG 77 (133)
...+|.++-. .+.|.. .+.+.+++.|+.+.+..... +.+ .+...++||+|+.+.
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSNE-DATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3456766632 223322 24556677899998876532 221 122358999999764
No 320
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=45.66 E-value=75 Score=22.23 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=32.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEe
Q 032797 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (133)
+.+.+++.|+.+.+..... +. +.+...++||+|+.+... .....+.++ +.++|+.-+.
T Consensus 25 i~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgii~~~~~~----~~~~~~~l~--~~~iPvV~~~ 89 (275)
T 3d8u_A 25 FQQALNKAGYQLLLGYSDY-SIEQEEKLLSTFLESRPAGVVLFGSEH----SQRTHQLLE--ASNTPVLEIA 89 (275)
T ss_dssp HHHHHHHTSCEECCEECTT-CHHHHHHHHHHHHTSCCCCEEEESSCC----CHHHHHHHH--HHTCCEEEES
T ss_pred HHHHHHHCCCEEEEEcCCC-CHHHHHHHHHHHHhcCCCEEEEeCCCC----CHHHHHHHH--hCCCCEEEEe
Confidence 4556777899887776532 22 123345899999976432 122222332 2357776653
No 321
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=44.78 E-value=14 Score=25.78 Aligned_cols=80 Identities=10% Similarity=0.004 Sum_probs=45.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHH----ccCCCCEEEECCCCCCcCCch-HHHHHHHH-h
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDSG-ISLQTVLE-L 94 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l----~~~~~DgvIl~GG~~~~~d~~-~~~~~i~~-~ 94 (133)
...++|+|+|........+...|+. .|+.+.....+ ..+.+ ....+|.+|+-=. -|...+ ...+.+++ .
T Consensus 5 ~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~--~~~~~~~~~~~~~~dlvllD~~--mp~~~G~~~~~~lr~~~ 80 (225)
T 3klo_A 5 ENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFS--ELWLEENKPESRSIQMLVIDYS--RISDDVLTDYSSFKHIS 80 (225)
T ss_dssp CSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGG--GHHHHTTCSGGGGCCEEEEEGG--GCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCC--cHHHHHHHhhccCCCEEEEeCC--CCCCCHHHHHHHHHHhh
Confidence 4457899998755566677788874 57766543222 22222 2236898887110 111122 24455666 4
Q ss_pred CCCCCEEEEec
Q 032797 95 GPTVPLFGVCM 105 (133)
Q Consensus 95 ~~~~PvLGICl 105 (133)
..+.|++-+.-
T Consensus 81 ~~~~~ii~lt~ 91 (225)
T 3klo_A 81 CPDAKEVIINC 91 (225)
T ss_dssp CTTCEEEEEEE
T ss_pred CCCCcEEEEEC
Confidence 56788887753
No 322
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=44.00 E-value=76 Score=24.36 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=36.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CHHHHccCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~---~~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (133)
+.+|+++.........+.+...+.|.....-++..- +.....-..+|.||+.. |..+. ..|++. .-++|
T Consensus 71 ~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~D----p~~e~---~AI~EA~~lgIP 143 (295)
T 2zkq_b 71 PADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTD----PRADH---QPLTEASYVNLP 143 (295)
T ss_dssp GGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESC----TTTTH---HHHHHHHHHTCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeC----CCcch---hHHHHHHHhCCC
Confidence 345667665322233344445556665543332110 11111113578888843 33332 345553 45699
Q ss_pred EEEEe
Q 032797 100 LFGVC 104 (133)
Q Consensus 100 vLGIC 104 (133)
+.|||
T Consensus 144 vIalv 148 (295)
T 2zkq_b 144 TIALC 148 (295)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99998
No 323
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=43.50 E-value=29 Score=22.93 Aligned_cols=78 Identities=15% Similarity=-0.004 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHc----cCCCCEEEECCCCCCcCC-chHHHHHHHHhC-CCCCEEEEechHHH---
Q 032797 39 NLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQD-SGISLQTVLELG-PTVPLFGVCMGLQC--- 109 (133)
Q Consensus 39 ~i~~~l~~~G~~~~v~~~~~~~~~~l~----~~~~DgvIl~GG~~~~~d-~~~~~~~i~~~~-~~~PvLGIClG~Ql--- 109 (133)
.+...|+..|+++.-.-.+ .+.+++. ..++|.+.+|........ .....+.+++.. +++|+ ++-|.++
T Consensus 22 ~v~~~l~~~G~~Vi~lG~~-~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v--~vGG~~~~~~ 98 (137)
T 1ccw_A 22 ILDHAFTNAGFNVVNIGVL-SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILL--YVGGNIVVGK 98 (137)
T ss_dssp HHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEE--EEEESCSSSS
T ss_pred HHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEE--EEECCCcCch
Confidence 3556789999999865433 3455532 348999999876432111 122455565542 24555 4456432
Q ss_pred --------HHHHhCCeee
Q 032797 110 --------IGEAFGDCAF 119 (133)
Q Consensus 110 --------La~a~GG~v~ 119 (133)
.+...|..-.
T Consensus 99 ~~~~~~~~~~~~~G~d~~ 116 (137)
T 1ccw_A 99 QHWPDVEKRFKDMGYDRV 116 (137)
T ss_dssp CCHHHHHHHHHHTTCSEE
T ss_pred HhhhhhHHHHHHCCCCEE
Confidence 3667777433
No 324
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=43.17 E-value=61 Score=20.50 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=22.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECC
Q 032797 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~G 76 (133)
+.+++++.|.++++...+....++.. .++|.+++++
T Consensus 23 ~~~~~~~~gi~~~i~a~~~~~~~~~~-~~~Dvil~~p 58 (106)
T 1e2b_A 23 MRAQAEKYEVPVIIEAFPETLAGEKG-QNADVVLLGP 58 (106)
T ss_dssp HHHHHHHSCCSEEEEEECSSSTTHHH-HHCSEEEECT
T ss_pred HHHHHHHCCCCeEEEEecHHHHHhhc-cCCCEEEEcc
Confidence 55677788998877654322233322 2689777754
No 325
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=43.07 E-value=61 Score=20.43 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=27.2
Q ss_pred CeEEEE-ECCCCch---HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECC
Q 032797 25 NPIIVI-DNYDSFT---YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (133)
Q Consensus 25 ~~i~vi-d~~~~~~---~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~G 76 (133)
|+|+++ ..+-+-+ ..+.+.+++.|.++++........++.. .++|.++++.
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~-~~~D~Ii~t~ 59 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV-DRFDVVLLAP 59 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT-TTCSEEEECS
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc-CCCCEEEECC
Confidence 676655 3333322 2345566677887665443222344332 4799777754
No 326
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=42.76 E-value=96 Score=22.65 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=32.2
Q ss_pred CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCC
Q 032797 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid~--~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG 77 (133)
....+|.++-. .+.|.. .+.+.+++.|+.+.+..... +. +.+...++||+|+.+.
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDN-DVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEECCC-ChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 34457776632 223332 24556677899998876532 22 1223358999999774
No 327
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=42.51 E-value=61 Score=25.08 Aligned_cols=79 Identities=15% Similarity=0.336 Sum_probs=45.5
Q ss_pred CeEEEEECCC------CchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchHHHH
Q 032797 25 NPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGISLQ 89 (133)
Q Consensus 25 ~~i~vid~~~------~~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~~~~ 89 (133)
.|++|+-... ++...+.+.|++.|+++.+++.- +.+.+. +...++|.||--|| |++-|......
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 112 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDCGKGIG 112 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHHHH
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhHHHHHH
Confidence 5888873222 24556777888889988766421 123322 22357899995555 45555554433
Q ss_pred HHH-------Hh-------CCCCCEEEEe
Q 032797 90 TVL-------EL-------GPTVPLFGVC 104 (133)
Q Consensus 90 ~i~-------~~-------~~~~PvLGIC 104 (133)
... ++ .+++|+..|=
T Consensus 113 ~~~~~~~~~~d~~~~~~~~~~~~p~i~IP 141 (387)
T 3bfj_A 113 IAATHEGDLYQYAGIETLTNPLPPIVAVN 141 (387)
T ss_dssp HHHHSSSCSGGGCBSSCCCSCCCCEEEEE
T ss_pred HHHhCCCCHHHHhcccccCCCCCCEEEEe
Confidence 331 11 2578888774
No 328
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=42.33 E-value=65 Score=20.54 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=26.6
Q ss_pred CeEEEE-ECCCCchH----HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 25 NPIIVI-DNYDSFTY----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
++|+++ ..+-+-.. .+.+.+.+.|+++++........+.. ..++|.||.+.-
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~~-~~~~DlIist~~ 78 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETY-MDGVHLICTTAR 78 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTS-TTSCSEEEESSC
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhhc-cCCCCEEEECCc
Confidence 466666 44333322 24456777888765544321122221 137997776553
No 329
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=42.12 E-value=23 Score=22.82 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=47.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC------------------CCHHHHc---cCCCCEEEECCCCCCcC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE------------------LTVEELK---RKNPRGVLISPGPGAPQ 82 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~------------------~~~~~l~---~~~~DgvIl~GG~~~~~ 82 (133)
.++|+|+.. +.....+.+.|.+.|+++.++..+. .+.+.+. ..++|.+|++-+ .
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~----~ 80 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS----D 80 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS----C
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC----C
Confidence 356777765 2345567788888888877765431 1111111 125677777544 1
Q ss_pred CchH--HHHHHHHhCCCCCEEEEechHHH--HHHHhCCe
Q 032797 83 DSGI--SLQTVLELGPTVPLFGVCMGLQC--IGEAFGDC 117 (133)
Q Consensus 83 d~~~--~~~~i~~~~~~~PvLGIClG~Ql--La~a~GG~ 117 (133)
+... .....++.. ...++..+....- .-..+|..
T Consensus 81 ~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l~~~G~~ 118 (141)
T 3llv_A 81 DEFNLKILKALRSVS-DVYAIVRVSSPKKKEEFEEAGAN 118 (141)
T ss_dssp HHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhC-CceEEEEEcChhHHHHHHHcCCC
Confidence 1111 223444455 6778887775542 23455664
No 330
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=42.09 E-value=82 Score=21.68 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=19.9
Q ss_pred CeEEEEECC---CCchHHHHHHHHh---CCCeEEEEeC
Q 032797 25 NPIIVIDNY---DSFTYNLCQYMGE---LGYHFEVYRN 56 (133)
Q Consensus 25 ~~i~vid~~---~~~~~~i~~~l~~---~G~~~~v~~~ 56 (133)
+||++|..- .+++..+.+++.+ .|.+++++..
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~~~~~v~~~dl 40 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSY 40 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCC
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 588888542 3566666655433 4778877654
No 331
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=41.54 E-value=1.2e+02 Score=23.38 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=52.2
Q ss_pred CCeEEEEECCCCchH---HHHHHHHhC--CCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCC--------chH-
Q 032797 24 KNPIIVIDNYDSFTY---NLCQYMGEL--GYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQD--------SGI- 86 (133)
Q Consensus 24 ~~~i~vid~~~~~~~---~i~~~l~~~--G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d--------~~~- 86 (133)
+..++.++...+... ...+++++. +..+.+-.. .+.++. ....+|+|+++.|++.-.. ...
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v--~t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~ 209 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNV--VTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQL 209 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEE--CSHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHH
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeC--CCHHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHH
Confidence 455666664222322 245566654 555442222 234432 3358999999877653110 011
Q ss_pred -HHHHHHH-h-CCCCCEE---EEechHHHH-HHHhCCeeee
Q 032797 87 -SLQTVLE-L-GPTVPLF---GVCMGLQCI-GEAFGDCAFS 120 (133)
Q Consensus 87 -~~~~i~~-~-~~~~PvL---GIClG~QlL-a~a~GG~v~~ 120 (133)
.+..+.+ . ..++|++ ||-.|-++. +.++|+....
T Consensus 210 ~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~ 250 (351)
T 2c6q_A 210 SAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVM 250 (351)
T ss_dssp HHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCcee
Confidence 1222322 2 2469999 699999998 5699998663
No 332
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=40.56 E-value=61 Score=25.59 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=31.7
Q ss_pred CCCeEEEE-ECCCCchHH----HHHHHHhCCCeEEEEeCCC---CCHHHHc--cCCCCEEEECCCC
Q 032797 23 NKNPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDE---LTVEELK--RKNPRGVLISPGP 78 (133)
Q Consensus 23 ~~~~i~vi-d~~~~~~~~----i~~~l~~~G~~~~v~~~~~---~~~~~l~--~~~~DgvIl~GG~ 78 (133)
...+|+|+ +..-++|.. +.+.|.+.|++.+++...+ .+..++. ..++|++|+ |+|
T Consensus 264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivl-Gsp 328 (410)
T 4dik_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIF-GVS 328 (410)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE-EEC
T ss_pred cccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEE-EeC
Confidence 34467665 433345554 4556677899887664321 2233332 248999999 554
No 333
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=40.51 E-value=54 Score=25.40 Aligned_cols=81 Identities=10% Similarity=0.063 Sum_probs=47.4
Q ss_pred eEEEEECCCCchHHHHHHHHhCCCeEE-EEeC-----CCCCHHHHc-----cCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 032797 26 PIIVIDNYDSFTYNLCQYMGELGYHFE-VYRN-----DELTVEELK-----RKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (133)
Q Consensus 26 ~i~vid~~~~~~~~i~~~l~~~G~~~~-v~~~-----~~~~~~~l~-----~~~~DgvIl~GG~~~~~d~~~~~~~i~~~ 94 (133)
+|.++..-+.....+..++.+.|.-+- .+.. ...+..|+. +.+-+.|++-|=.+...+ ....+++++.
T Consensus 170 ~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e-~~~~~~~r~~ 248 (334)
T 3mwd_B 170 SVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEE-YKICRGIKEG 248 (334)
T ss_dssp SEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHH-HHHHHHHHTT
T ss_pred CEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHH-HHHHHHHHhh
Confidence 799998755667778888877554332 2322 123444432 125677777422222222 4455667765
Q ss_pred CCCCCEEEEechH
Q 032797 95 GPTVPLFGVCMGL 107 (133)
Q Consensus 95 ~~~~PvLGIClG~ 107 (133)
..+|||..++-|-
T Consensus 249 ~~~KPVV~~kaGr 261 (334)
T 3mwd_B 249 RLTKPIVCWCIGT 261 (334)
T ss_dssp SCCSCEEEEEECT
T ss_pred cCCCCEEEEEcCC
Confidence 6789999999774
No 334
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=40.26 E-value=31 Score=24.79 Aligned_cols=94 Identities=15% Similarity=0.049 Sum_probs=50.5
Q ss_pred CCeEEEEE----CCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----ccCCCCEEEECCCCCCcCCchH---HHHHHH
Q 032797 24 KNPIIVID----NYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDSGI---SLQTVL 92 (133)
Q Consensus 24 ~~~i~vid----~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l----~~~~~DgvIl~GG~~~~~d~~~---~~~~i~ 92 (133)
..+|++-- ..+--...+...|+..|+++...-.+ .+.+++ ...++|.|.+||+......... .++.++
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~-vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~ 170 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD-VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN 170 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS-CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC-CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH
Confidence 45666552 22222334566788999999876554 455554 2358999999555433222222 334444
Q ss_pred HhC--CCCCEE--EEechHHHHHHHhCCeee
Q 032797 93 ELG--PTVPLF--GVCMGLQCIGEAFGDCAF 119 (133)
Q Consensus 93 ~~~--~~~PvL--GIClG~QlLa~a~GG~v~ 119 (133)
+.. .++|++ |-... |-++...|+..+
T Consensus 171 ~~~~~~~v~v~vGG~~~~-~~~a~~iGad~~ 200 (215)
T 3ezx_A 171 EEKLRDSVKCMFGGAPVS-DKWIEEIGADAT 200 (215)
T ss_dssp HTTCGGGSEEEEESSSCC-HHHHHHHTCCBC
T ss_pred HcCCCCCCEEEEECCCCC-HHHHHHhCCeEE
Confidence 432 245643 22222 446666776554
No 335
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=40.26 E-value=35 Score=23.49 Aligned_cols=50 Identities=10% Similarity=-0.002 Sum_probs=33.1
Q ss_pred CEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEech--------------------------------HHHHHHHhCC
Q 032797 70 RGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG--------------------------------LQCIGEAFGD 116 (133)
Q Consensus 70 DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG--------------------------------~QlLa~a~GG 116 (133)
-.|+++-|..+.. ...+.++.+ ..+++++.|.+| ++-||...||
T Consensus 114 ~ivllTDG~~~~~---~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG 190 (218)
T 3ibs_A 114 AIIVITDGENHEG---GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKG 190 (218)
T ss_dssp EEEEEECCTTCCS---CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEE
T ss_pred EEEEEcCCCCCCC---cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCC
Confidence 3556777754322 233445554 678999999998 5677888888
Q ss_pred eeeecc
Q 032797 117 CAFSAW 122 (133)
Q Consensus 117 ~v~~~~ 122 (133)
+.....
T Consensus 191 ~~~~~~ 196 (218)
T 3ibs_A 191 IYVRVD 196 (218)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 876543
No 336
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=39.38 E-value=26 Score=27.52 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=26.4
Q ss_pred CCCCEEEECC-CCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 67 KNPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 67 ~~~DgvIl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
..++|||+-| |.|+......+.+.++++ ++++||.-.-
T Consensus 252 ~g~~GiVle~~G~Gn~p~~~~~~~~l~~a~~~Gi~VV~~S 291 (358)
T 2him_A 252 QPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLT 291 (358)
T ss_dssp SSCSEEEEEEBTTTBCCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEecCCCCCCCCcHHHHHHHHHHHHCCCEEEEEc
Confidence 4699999966 666654434566777775 7789987543
No 337
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=39.19 E-value=59 Score=22.76 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=33.4
Q ss_pred CCeEEEEECC-CC---chHHHHHHHHhCCCeEEEEeCCCCCHHHHc----cCCCCEEEECCC
Q 032797 24 KNPIIVIDNY-DS---FTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPG 77 (133)
Q Consensus 24 ~~~i~vid~~-~~---~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~~~~DgvIl~GG 77 (133)
..+|++.--. |. -...+...|+..|+++.....+ .+.+++. ..++|.|.+|..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~-vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD-IEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS-BCHHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEecc
Confidence 4466666221 22 2334567788999999876654 4555542 348999999875
No 338
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=38.86 E-value=12 Score=27.13 Aligned_cols=43 Identities=21% Similarity=0.462 Sum_probs=27.1
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCEEEEechHHHHH
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIG 111 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~--~~~~~PvLGIClG~QlLa 111 (133)
+.|+|.++=|||+..-..--....+. +..++|++||+. ++.++
T Consensus 56 dld~Iav~~GPGsfTglRig~~~AkgLa~~~~iPl~gVst-L~a~a 100 (213)
T 3r6m_A 56 DLDALAFGRGPGSFTGVRIGIGIAQGLAFGAELPMIGVST-LAAMA 100 (213)
T ss_dssp TCSEEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEEH-HHHHH
T ss_pred HccEEEEecCCCchhhHHHHHHHHHHHHHHhCCCEEEEcC-HHHHH
Confidence 68999999999976422111222332 245799999985 34444
No 339
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=38.81 E-value=68 Score=24.78 Aligned_cols=50 Identities=8% Similarity=0.017 Sum_probs=29.1
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHc-cCCCCEEEEC
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-RKNPRGVLIS 75 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~-~~~~DgvIl~ 75 (133)
|||++.+..+.....+.+++++.|+++...+.. .+.+.+. ..++|++++.
T Consensus 2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~li~~ 52 (343)
T 2yq5_A 2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQA-LTSATVDLAEGCSSVSLK 52 (343)
T ss_dssp CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSC-CSTTGGGGGTTCSEEEEC
T ss_pred ceEEEEecCcccHHHHHHHHHhCCeEEEECCCC-CCHHHHHHhcCCcEEEEc
Confidence 788888865544445566666778887765432 1211111 1367877774
No 340
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=38.57 E-value=1.4e+02 Score=23.42 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=26.0
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~ 56 (133)
...+.+|+||..+.+-. ...+.|.+.|+++.....
T Consensus 6 ~~~~k~v~viG~G~sG~-s~A~~l~~~G~~V~~~D~ 40 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGE-AAARLLAKLGAIVTVNDG 40 (451)
T ss_dssp TTTTCEEEEECCTTTHH-HHHHHHHHTTCEEEEEES
T ss_pred hcCCCEEEEEeeCHHHH-HHHHHHHhCCCEEEEEeC
Confidence 34567899998865544 468888999999888764
No 341
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=38.55 E-value=1.2e+02 Score=22.87 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=28.8
Q ss_pred CCeEEEEEC-CCCchHHHHH----HHHhCCCeEEEEeCCCCCHHHHcc--CCCCEEEE
Q 032797 24 KNPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKR--KNPRGVLI 74 (133)
Q Consensus 24 ~~~i~vid~-~~~~~~~i~~----~l~~~G~~~~v~~~~~~~~~~l~~--~~~DgvIl 74 (133)
.++++++-. ..+++..+.+ .+.+.|.+++++........++.. .++|++|+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~ 308 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLV 308 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEE
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEE
Confidence 356666632 2234444444 455578888887654333433311 26999999
No 342
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=38.53 E-value=98 Score=21.51 Aligned_cols=38 Identities=13% Similarity=0.230 Sum_probs=25.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGP 78 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~ 78 (133)
+.+.+++.|+.+.+...+. +.+ .+...++||+|+.+..
T Consensus 24 i~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 24 LEQGARARGYQLLIASSDD-QPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp HHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 4556777899999887642 221 2233589999997753
No 343
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=38.43 E-value=87 Score=21.71 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=52.3
Q ss_pred CCCeEEEEEC---CCCchHHHHHHHHh---CCCeEE-EEeCCCCC------------HHH---Hcc--CCCCEEEECCCC
Q 032797 23 NKNPIIVIDN---YDSFTYNLCQYMGE---LGYHFE-VYRNDELT------------VEE---LKR--KNPRGVLISPGP 78 (133)
Q Consensus 23 ~~~~i~vid~---~~~~~~~i~~~l~~---~G~~~~-v~~~~~~~------------~~~---l~~--~~~DgvIl~GG~ 78 (133)
..|||++|.. .++++..+.+++.+ .|++++ ++...+.+ .++ +.. ..+|++|+ +.|
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~-~sP 81 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVI-VTP 81 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEE-EEC
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEE-Eec
Confidence 3478988843 34677777777755 366777 54332111 011 111 26899999 444
Q ss_pred C-CcCCchH---HHHHHHH----hCCCCCEEEEec--h----------HHHHHHHhCCeeeecc
Q 032797 79 G-APQDSGI---SLQTVLE----LGPTVPLFGVCM--G----------LQCIGEAFGDCAFSAW 122 (133)
Q Consensus 79 ~-~~~d~~~---~~~~i~~----~~~~~PvLGICl--G----------~QlLa~a~GG~v~~~~ 122 (133)
- +-.-... +++++.. .-.+||+.-|+- | +.-+...+|..+.+.+
T Consensus 82 ~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg~~a~~~Lr~~l~~lg~~v~~~~ 145 (193)
T 3svl_A 82 EYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKP 145 (193)
T ss_dssp CBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHTTCEECCSS
T ss_pred ccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcchHHHHHHHHHHHHHCCCEEcCCC
Confidence 3 1112222 3444432 125788877763 3 1223456888887544
No 344
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=38.42 E-value=1.1e+02 Score=21.97 Aligned_cols=74 Identities=9% Similarity=0.089 Sum_probs=39.1
Q ss_pred CeEEEEECCC--CchHH----HHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCchHHHHHH
Q 032797 25 NPIIVIDNYD--SFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (133)
Q Consensus 25 ~~i~vid~~~--~~~~~----i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~~~~~~~i 91 (133)
.+|.++-... .|... +.+.+++.|+.+.+.... .+.+ .+...++||||+.+... .......+.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ-QKQENQIKAVRSFVAQGVDAIFIAPVVA--TGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECT-TCHHHHHHHHHHHHHHTCSEEEECCSSS--SSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCh--hhHHHHHHHH
Confidence 5677664322 22222 445667789999887653 2221 12234799999976432 1112222222
Q ss_pred HHhCCCCCEEEE
Q 032797 92 LELGPTVPLFGV 103 (133)
Q Consensus 92 ~~~~~~~PvLGI 103 (133)
+ +.++|+.-+
T Consensus 80 ~--~~~iPvV~~ 89 (306)
T 2vk2_A 80 K--DAEIPVFLL 89 (306)
T ss_dssp H--HTTCCEEEE
T ss_pred H--HCCCCEEEe
Confidence 2 345777655
No 345
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=37.86 E-value=77 Score=23.91 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=37.8
Q ss_pred CeEEEEECCC---Cc-------hHHHHHHHHhCCCeEEEEeCCC----CCHHHHccCCCCEEEECCCCCCc
Q 032797 25 NPIIVIDNYD---SF-------TYNLCQYMGELGYHFEVYRNDE----LTVEELKRKNPRGVLISPGPGAP 81 (133)
Q Consensus 25 ~~i~vid~~~---~~-------~~~i~~~l~~~G~~~~v~~~~~----~~~~~l~~~~~DgvIl~GG~~~~ 81 (133)
|+|++++.+. +| +-.+.+.+++.|.+++++.... .+.++.+...||-+++-.+.-+.
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd~is~k~~iy~~~fd~vd~n~ydr~~vvn~s~nf 71 (351)
T 1jg7_A 1 MKIAIINMGNNVINFKTVPSSETIYLFKVISEMGLNVDIISLKNGVYTKSFDEVDVNDYDRLIVVNSSINF 71 (351)
T ss_dssp CCEEEEESSSCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEESSCCSSEEEGGGSCGGGCSEEEEECCCCCC
T ss_pred CceEEEecCCccccceecCccceeeHHHHHHHcCCCeeEEEeccceeeeecccCCccccceEEEEeceeec
Confidence 5788886543 23 1236678899999999886532 23566655589999886665443
No 346
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=37.77 E-value=77 Score=21.05 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=17.6
Q ss_pred CeEEEEECC---CCchHHHHHHHHhCCCeEEEE
Q 032797 25 NPIIVIDNY---DSFTYNLCQYMGELGYHFEVY 54 (133)
Q Consensus 25 ~~i~vid~~---~~~~~~i~~~l~~~G~~~~v~ 54 (133)
|+|++|..- .+++..+.+.+.+ +++++.+
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~-~~~~~~~ 35 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHI 35 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc-CCeEEEE
Confidence 578888642 3677778887765 3444433
No 347
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=37.19 E-value=54 Score=23.49 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=35.3
Q ss_pred ccccccCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeC---CCCCHHHHcc--C--CCCEEEECCCCCC
Q 032797 15 LDDKKSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRN---DELTVEELKR--K--NPRGVLISPGPGA 80 (133)
Q Consensus 15 ~~~~~~~~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~---~~~~~~~l~~--~--~~DgvIl~GG~~~ 80 (133)
+|..+.+.++++|+|... .+|. ..+.+.|.+.|+++..+.. |..+.+++.. . ++|.||-..|...
T Consensus 3 ~~~~~~~~~~~~vlVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~ 75 (292)
T 1vl0_A 3 SDKIHHHHHHMKILITGA-NGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTA 75 (292)
T ss_dssp ---------CEEEEEEST-TSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred ccccccccccceEEEECC-CChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCccCC
Confidence 355566666777777754 4554 4578888888988776632 2122333321 1 6999998887654
No 348
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=36.72 E-value=63 Score=23.32 Aligned_cols=53 Identities=13% Similarity=0.294 Sum_probs=30.6
Q ss_pred CeEEEEECCC-------CchHHHHH----HHHhCCCeEEEEeCCC-CCHHHHc--cCCCCEEEECCCC
Q 032797 25 NPIIVIDNYD-------SFTYNLCQ----YMGELGYHFEVYRNDE-LTVEELK--RKNPRGVLISPGP 78 (133)
Q Consensus 25 ~~i~vid~~~-------~~~~~i~~----~l~~~G~~~~v~~~~~-~~~~~l~--~~~~DgvIl~GG~ 78 (133)
++|++|.... +++..+.+ .+++.|.+++++..++ .+.+... -..+|+||+ +.|
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~-~~P 92 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIY-QMP 92 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEE-EEE
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEE-ECC
Confidence 5799885432 34444443 4556799998887542 2222211 137999999 444
No 349
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=35.69 E-value=1.1e+02 Score=23.58 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=18.1
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
.+|.||++. |..+. ..|++. .-++|+.+||
T Consensus 122 ePdllvV~D----p~~d~---qAI~EA~~lnIPtIALv 152 (305)
T 3iz6_A 122 EPRLLILTD----PRTDH---QPIKESALGNIPTIAFC 152 (305)
T ss_dssp CCSEEEESC----TTTTH---HHHHHHHHHTCCEEEEE
T ss_pred CCceeEEeC----cccch---HHHHHHHHcCCCEEEEE
Confidence 567777742 33332 344443 3469999999
No 350
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=35.55 E-value=1.4e+02 Score=22.32 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=49.3
Q ss_pred cCCCCCeEEEEECCCCchHHHHHHHHh-C-CCeEEEE------eCCCCCHHH-----------HccCCCCEEEECCCCCC
Q 032797 20 SKNNKNPIIVIDNYDSFTYNLCQYMGE-L-GYHFEVY------RNDELTVEE-----------LKRKNPRGVLISPGPGA 80 (133)
Q Consensus 20 ~~~~~~~i~vid~~~~~~~~i~~~l~~-~-G~~~~v~------~~~~~~~~~-----------l~~~~~DgvIl~GG~~~ 80 (133)
++...++|.|+|.+-+-.. +.+.+++ . ..++..+ |+-..+.++ +...++|.+|+.=-
T Consensus 20 ~~~~~~~IgvfDSGvGGLt-v~~~i~~~lP~e~~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACN--- 95 (274)
T 3uhf_A 20 FQSNAMKIGVFDSGVGGLS-VLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACN--- 95 (274)
T ss_dssp CCCSCCEEEEEESSSTTHH-HHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCH---
T ss_pred ccCCCCeEEEEECCCChHH-HHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCC---
Confidence 4456678999999765443 4444544 3 4455444 222334433 22358999999331
Q ss_pred cCCchHH-HHHHHHhCCCCCEEEEe-chHHHHHHH
Q 032797 81 PQDSGIS-LQTVLELGPTVPLFGVC-MGLQCIGEA 113 (133)
Q Consensus 81 ~~d~~~~-~~~i~~~~~~~PvLGIC-lG~QlLa~a 113 (133)
..... .+.+++.- ++|++||- -+.+.+...
T Consensus 96 --Ta~~~al~~lr~~~-~iPvigiiepa~~~a~~~ 127 (274)
T 3uhf_A 96 --TASAYALDALRAKA-HFPVYGVIDAGVEATIKA 127 (274)
T ss_dssp --HHHHHSHHHHHHHC-SSCEECSHHHHHHHHHHH
T ss_pred --ChhHHHHHHHHHhc-CCCEEcCCHHHHHHHHHh
Confidence 12212 45566532 49999987 566665554
No 351
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=35.18 E-value=12 Score=30.06 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=33.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG 79 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~ 79 (133)
.|||+|+..+ ..-..+.+.|.+.|.++.++..+....+.+. ..+|..++.|-+.
T Consensus 3 ~M~iiI~G~G-~vG~~la~~L~~~~~~v~vId~d~~~~~~~~-~~~~~~~i~Gd~~ 56 (461)
T 4g65_A 3 AMKIIILGAG-QVGGTLAENLVGENNDITIVDKDGDRLRELQ-DKYDLRVVNGHAS 56 (461)
T ss_dssp CEEEEEECCS-HHHHHHHHHTCSTTEEEEEEESCHHHHHHHH-HHSSCEEEESCTT
T ss_pred cCEEEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HhcCcEEEEEcCC
Confidence 5788877763 4556788888888888888876522222332 2467666656433
No 352
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=34.81 E-value=76 Score=25.45 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=34.3
Q ss_pred EEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEech-------HHHHHHHhCCeeeecc
Q 032797 71 GVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG-------LQCIGEAFGDCAFSAW 122 (133)
Q Consensus 71 gvIl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIClG-------~QlLa~a~GG~v~~~~ 122 (133)
.|+||-|..+..+.....+.++....+++++.|.+| ++-||..-||+.....
T Consensus 183 IILLTDG~~~~~~~~~l~~~~~a~~~~i~i~tiGiG~~~d~~~L~~IA~~tgG~~~~v~ 241 (464)
T 4fx5_A 183 AILLTDGKDESETPADLARAIQSSIGNFTADCRGIGEDWEPKELRKIADALLGTVGIIR 241 (464)
T ss_dssp EEEEESSCCTTSCHHHHHHHHHHHTTTCEEEEEEESSSSCHHHHHHHHHHTTCCEEEES
T ss_pred EEEEcCCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCccCHHHHHHHHHhCCCEEEEcC
Confidence 566777653322222334445555678999888888 6788999999877654
No 353
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=33.77 E-value=50 Score=21.32 Aligned_cols=90 Identities=8% Similarity=0.024 Sum_probs=48.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHH------------------Hc---cCCCCEEEECCCCCCcC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEE------------------LK---RKNPRGVLISPGPGAPQ 82 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~------------------l~---~~~~DgvIl~GG~~~~~ 82 (133)
..+|+|+.+ +.+...+.+.|.+.|.++.++..+....+. +. ..++|.+|++-+ .
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~----~ 81 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP----N 81 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS----C
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC----C
Confidence 356777775 345566778888888888777543111111 11 124566665432 1
Q ss_pred CchH--HHHHHHHhCCCCCEEEEechHHH--HHHHhCCee
Q 032797 83 DSGI--SLQTVLELGPTVPLFGVCMGLQC--IGEAFGDCA 118 (133)
Q Consensus 83 d~~~--~~~~i~~~~~~~PvLGIClG~Ql--La~a~GG~v 118 (133)
+... ....++....+.+++..+....- .-..+|...
T Consensus 82 ~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~~~G~d~ 121 (140)
T 3fwz_A 82 GYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQ 121 (140)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHHHTTCSE
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCCE
Confidence 1111 22344555556788888875443 334567653
No 354
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=33.63 E-value=33 Score=23.34 Aligned_cols=48 Identities=6% Similarity=0.046 Sum_probs=28.2
Q ss_pred CeEEEE-ECCCCchHHHHHHHHh-CCC--eEEEEeCCCCCHHHHccCCCCEEEE
Q 032797 25 NPIIVI-DNYDSFTYNLCQYMGE-LGY--HFEVYRNDELTVEELKRKNPRGVLI 74 (133)
Q Consensus 25 ~~i~vi-d~~~~~~~~i~~~l~~-~G~--~~~v~~~~~~~~~~l~~~~~DgvIl 74 (133)
++|+|+ ....+.+..+.+.+.+ .+. ++++++..+.+.+++. ++|.||+
T Consensus 2 ~kilIiY~S~tGnT~~iA~~ia~~l~~~~~v~~~~~~~~~~~~l~--~~d~ii~ 53 (182)
T 2wc1_A 2 AKIGLFFGSDTGTTRKIAKQIKDMFDDEVMAKPLNVNRADVADFM--AYDFLIL 53 (182)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHTTSCTTTBCCCEEGGGCCHHHHH--HCSEEEE
T ss_pred cEEEEEEECCCchHHHHHHHHHHHhcccCceEEEEcccCCHHHHh--hCCeEEE
Confidence 356666 3334567778887765 332 3445554333445554 6899988
No 355
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=33.04 E-value=1.4e+02 Score=21.54 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=38.7
Q ss_pred CCCeEEEEECC-CCch----HHHHHHHHhCCC------eEEEEeCCCCCHH-------HHccCCCCEEEECCCCCCcCCc
Q 032797 23 NKNPIIVIDNY-DSFT----YNLCQYMGELGY------HFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDS 84 (133)
Q Consensus 23 ~~~~i~vid~~-~~~~----~~i~~~l~~~G~------~~~v~~~~~~~~~-------~l~~~~~DgvIl~GG~~~~~d~ 84 (133)
...+|.|+..- ..|. ..+.+.+++.|+ .+.+...+ .+.+ .+...++||||++|.+
T Consensus 7 ~t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~-~~~~~~~~~~~~l~~~~vDgII~~~~~------ 79 (302)
T 2qh8_A 7 KTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQ-GNPAIAVQIARQFVGENPDVLVGIATP------ 79 (302)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEEESHH------
T ss_pred CCcEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCC-CCHHHHHHHHHHHHhCCCCEEEECChH------
Confidence 34567776322 2222 235667778898 44444443 2221 2334589999997631
Q ss_pred hHHHHHHHHhCCCCCEEEEe
Q 032797 85 GISLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 85 ~~~~~~i~~~~~~~PvLGIC 104 (133)
.. ..+.....++|+.-+.
T Consensus 80 -~~-~~~~~~~~~iPvV~~~ 97 (302)
T 2qh8_A 80 -TA-QALVSATKTIPIVFTA 97 (302)
T ss_dssp -HH-HHHHHHCSSSCEEEEE
T ss_pred -HH-HHHHhcCCCcCEEEEe
Confidence 11 1122235678888765
No 356
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=33.03 E-value=45 Score=24.15 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=27.4
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCEEEEechHHHH
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCI 110 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~--~~~~~PvLGIClG~QlL 110 (133)
+.|+|.++=|||+..-...-....+. +..++|+.||+.-.-+.
T Consensus 55 did~Iav~~GPGsftglRig~~~ak~la~~~~~Pl~~V~~l~a~a 99 (231)
T 2gel_A 55 EIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMA 99 (231)
T ss_dssp GCSEEEEECCSSCHHHHHHHHHHHHHHHHTTTCCEEEECHHHHHH
T ss_pred HCCEEEEEcCCChhHhHHHHHHHHHHHHHHcCCCEEEeccHHHHH
Confidence 57999999999876421111223333 35689999999644333
No 357
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=32.90 E-value=70 Score=24.69 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=34.9
Q ss_pred CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeC--CCCCHHH-------HccCCCCEEEECCCCCCcCCchH
Q 032797 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRN--DELTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (133)
Q Consensus 25 ~~i~vid~~~~-----~~~~i~~~l~~~G~~~~v~~~--~~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~ 86 (133)
.|++||-.... +...+.+.|++.|.++.+++. .+.+.+. +...++|.||--|| |++-|...
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~AK 115 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG-GSPMDFAK 115 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES-HHHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 57877743222 335577788888988776642 1133332 22347999995555 34444443
No 358
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=32.62 E-value=50 Score=24.26 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~ 57 (133)
+|+|+|+..+ ....+.+++++.|+++.++..+
T Consensus 2 ~m~Ililg~g--~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYASH--SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESST--THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECCh--hHHHHHHHHHhCCCEEEEEECC
Confidence 4789999875 5567889999999998877543
No 359
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=32.52 E-value=1.2e+02 Score=22.45 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=43.5
Q ss_pred CCCeEEEEECCCCchH----HHHHHHHhCCCeEEEE-eCC--CCC----HHHHccCCCCEEEECCCCCCcCCchHHHHHH
Q 032797 23 NKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVY-RND--ELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~-~~~--~~~----~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i 91 (133)
...||++|...+.+.. .+.+.+++.|.++... .+. ..+ ...+...++|+|++.+.. .+...+++.+
T Consensus 142 g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~---~~a~~~~~~~ 218 (392)
T 3lkb_A 142 KGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVA---GPVANILKDA 218 (392)
T ss_dssp TTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCH---HHHHHHHHHH
T ss_pred CCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCc---chHHHHHHHH
Confidence 4578998864444432 4667788889876532 221 112 122334579999985521 1122234444
Q ss_pred HHhCCCCCEEEE
Q 032797 92 LELGPTVPLFGV 103 (133)
Q Consensus 92 ~~~~~~~PvLGI 103 (133)
++..-+.|++|.
T Consensus 219 ~~~g~~~~~~~~ 230 (392)
T 3lkb_A 219 KRLGLKMRHLGA 230 (392)
T ss_dssp HHTTCCCEEEEC
T ss_pred HHcCCCceEEEe
Confidence 554556898886
No 360
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=32.11 E-value=28 Score=24.98 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=27.4
Q ss_pred cCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEE
Q 032797 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (133)
Q Consensus 20 ~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~ 54 (133)
....+.+|+|++....+...+.+.|+..|+++...
T Consensus 7 ~~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~ 41 (254)
T 2ayx_A 7 EGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTY 41 (254)
T ss_dssp CTTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEEC
T ss_pred cccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEe
Confidence 44677899999876666777888999999887654
No 361
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=31.49 E-value=1.2e+02 Score=22.76 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=44.6
Q ss_pred CCCCeEEEEEC---CCCchHHHHH----HHHhCCCeEEEEeCCCCC------------HHHHcc--CCCCEEEECCCCC-
Q 032797 22 NNKNPIIVIDN---YDSFTYNLCQ----YMGELGYHFEVYRNDELT------------VEELKR--KNPRGVLISPGPG- 79 (133)
Q Consensus 22 ~~~~~i~vid~---~~~~~~~i~~----~l~~~G~~~~v~~~~~~~------------~~~l~~--~~~DgvIl~GG~~- 79 (133)
...++|++|.. ..+++..+.+ .+++.|++++++...+.+ ..++.. ..+|+||+ +.|-
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~-aSP~Y 134 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVW-CSPER 134 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE-EEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEE-EcCcc
Confidence 34578998853 2356655544 445579999887653322 111111 26899999 4432
Q ss_pred CcCCchHHHHHHHHh---------CCCCCEEEEec
Q 032797 80 APQDSGISLQTVLEL---------GPTVPLFGVCM 105 (133)
Q Consensus 80 ~~~d~~~~~~~i~~~---------~~~~PvLGICl 105 (133)
+-.-...++.+|..+ -.+||+.-|.-
T Consensus 135 n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~t 169 (279)
T 2fzv_A 135 HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQV 169 (279)
T ss_dssp TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEE
T ss_pred ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEE
Confidence 111123344445432 14788776664
No 362
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=31.19 E-value=1e+02 Score=19.87 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=38.5
Q ss_pred eEEEE-ECCCCchHHHHH----HHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCC----CcC-CchHHHHHHHHh-
Q 032797 26 PIIVI-DNYDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG----APQ-DSGISLQTVLEL- 94 (133)
Q Consensus 26 ~i~vi-d~~~~~~~~i~~----~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~----~~~-d~~~~~~~i~~~- 94 (133)
+++|+ ....+.+..+.+ .+.+.|+++++++.. +.+++. ++|.+|+ |.|- .+. ....+.+.+...
T Consensus 3 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~--~~~~l~--~~d~vi~-g~pt~g~g~~p~~~~~f~~~l~~~~ 77 (147)
T 2hna_A 3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP--LLEDLP--ASGIWLV-ISSTHGAGDIPDNLSPFYEALQEQK 77 (147)
T ss_dssp SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT--TSCSSC--SEEEEEE-ECCTTTTCCTTSSCHHHHHHHHHHC
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCC--CHHHcc--cCCeEEE-EECccCCCCCChhHHHHHHHHHhhc
Confidence 56555 222345555544 455568888776432 222332 6888887 3331 111 122334444432
Q ss_pred -C-CCCCEEEEechHH
Q 032797 95 -G-PTVPLFGVCMGLQ 108 (133)
Q Consensus 95 -~-~~~PvLGIClG~Q 108 (133)
. .++++.-++.|-+
T Consensus 78 ~~l~~~~~avfg~G~~ 93 (147)
T 2hna_A 78 PDLSAVRFGAIGIGSR 93 (147)
T ss_dssp CCTTEEEEEEESCCHH
T ss_pred cccCCCEEEEEecccC
Confidence 2 3456666666654
No 363
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=31.00 E-value=1.1e+02 Score=24.54 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCCCEEEECC-CCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 67 KNPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 67 ~~~DgvIl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
..++|||+-| |.|+.. ..+.+.++++ ++++||.-.-
T Consensus 324 ~g~~GiVleg~G~Gn~p--~~~~~~l~~a~~~Gi~VV~~S 361 (435)
T 2d6f_A 324 EGYRGIVIEGTGLGHCP--DTLIPVIGEAHDMGVPVAMTS 361 (435)
T ss_dssp TTCSEEEEEEBTTTBCC--GGGHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEecCCCCCcC--HHHHHHHHHHHhCCCEEEEeC
Confidence 4689999866 555543 4456667764 6789987554
No 364
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=30.97 E-value=1.4e+02 Score=20.90 Aligned_cols=97 Identities=8% Similarity=-0.071 Sum_probs=53.6
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-C---HHHHccCCCCEEEECCCCCCc----CCc---------h
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-T---VEELKRKNPRGVLISPGPGAP----QDS---------G 85 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~-~---~~~l~~~~~DgvIl~GG~~~~----~d~---------~ 85 (133)
+.++|+++-.+......+.+...+.+.++.++..+-. . ..++ ..++|.+|--||...- .+. -
T Consensus 3 ~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~ 81 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGL-QDEVDAIISRGATSDYIKKSVSIPSISIKVTRF 81 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHH
T ss_pred CCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHh-cCCCeEEEECChHHHHHHHhCCCCEEEEcCCHh
Confidence 5568898887666666666666666777776654310 0 1123 4578955555553310 011 1
Q ss_pred HHHHHHHHh-CCCCCEEEE-----echHHHHHHHhCCeeee
Q 032797 86 ISLQTVLEL-GPTVPLFGV-----CMGLQCIGEAFGDCAFS 120 (133)
Q Consensus 86 ~~~~~i~~~-~~~~PvLGI-----ClG~QlLa~a~GG~v~~ 120 (133)
+.++.+..+ +.+.++-=| +.|...++..||-++..
T Consensus 82 Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~ 122 (196)
T 2q5c_A 82 DTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKE 122 (196)
T ss_dssp HHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEE
Confidence 233444443 222233333 45888899999988764
No 365
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=30.85 E-value=2e+02 Score=22.76 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=47.9
Q ss_pred CCeEEEEECCCCchH---HHHHHHHhC-CCeEEEEeCCCCCHHH---HccCCCCEEEECCCCCCcC--C------chH--
Q 032797 24 KNPIIVIDNYDSFTY---NLCQYMGEL-GYHFEVYRNDELTVEE---LKRKNPRGVLISPGPGAPQ--D------SGI-- 86 (133)
Q Consensus 24 ~~~i~vid~~~~~~~---~i~~~l~~~-G~~~~v~~~~~~~~~~---l~~~~~DgvIl~GG~~~~~--d------~~~-- 86 (133)
+..++++|...+... .+.+.+++. +..+..-.. .+.++ +....+|+|++..|+|+.. . ...
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V--~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~ 233 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNV--VTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQIT 233 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEE--CSHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeec--CCHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHH
Confidence 346777765434333 344556554 655442111 23333 3345899999965665421 1 111
Q ss_pred HHHHHHH-h-CCCCCEEE---EechHHHH-HHHhCCeeee
Q 032797 87 SLQTVLE-L-GPTVPLFG---VCMGLQCI-GEAFGDCAFS 120 (133)
Q Consensus 87 ~~~~i~~-~-~~~~PvLG---IClG~QlL-a~a~GG~v~~ 120 (133)
.+..+.+ . ..++||++ |..+-.+. +.++|+....
T Consensus 234 al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 234 AIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp HHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 1223333 2 34799997 77777766 5678886543
No 366
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=30.73 E-value=71 Score=24.00 Aligned_cols=37 Identities=11% Similarity=0.006 Sum_probs=23.2
Q ss_pred cCCCCCeEEEEEC---CCCchHH----HHHHHHhCCCeEEEEeC
Q 032797 20 SKNNKNPIIVIDN---YDSFTYN----LCQYMGELGYHFEVYRN 56 (133)
Q Consensus 20 ~~~~~~~i~vid~---~~~~~~~----i~~~l~~~G~~~~v~~~ 56 (133)
...+.|||+||.. .+|++.. +.+.+++.|.+++++..
T Consensus 18 ~~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 18 LYFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp ----CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred chhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3456689999953 3356554 44567778999998864
No 367
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=30.56 E-value=1.2e+02 Score=23.58 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=49.1
Q ss_pred CchHHHHHHHHhC-CCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCCch----HHHHHHH-HhCCCCCEEE---
Q 032797 35 SFTYNLCQYMGEL-GYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSG----ISLQTVL-ELGPTVPLFG--- 102 (133)
Q Consensus 35 ~~~~~i~~~l~~~-G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d~~----~~~~~i~-~~~~~~PvLG--- 102 (133)
+.+....+++++. +..+.+--. .+.++. ....+|+|+++|..+...+.. ..+..+. .+..++||++
T Consensus 203 ~~~w~~i~~lr~~~~~PvivK~v--~~~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GG 280 (352)
T 3sgz_A 203 SFCWNDLSLLQSITRLPIILKGI--LTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGG 280 (352)
T ss_dssp TCCHHHHHHHHHHCCSCEEEEEE--CSHHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESS
T ss_pred CCCHHHHHHHHHhcCCCEEEEec--CcHHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECC
Confidence 4566677888763 555543322 233332 335899999977544322221 1222333 3455799994
Q ss_pred EechHHHH-HHHhCCeeee
Q 032797 103 VCMGLQCI-GEAFGDCAFS 120 (133)
Q Consensus 103 IClG~QlL-a~a~GG~v~~ 120 (133)
|-.|..++ +.++|++...
T Consensus 281 I~~g~Dv~kaLalGA~aV~ 299 (352)
T 3sgz_A 281 VRTGTDVLKALALGARCIF 299 (352)
T ss_dssp CCSHHHHHHHHHTTCSEEE
T ss_pred CCCHHHHHHHHHcCCCEEE
Confidence 67888888 5688887654
No 368
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=30.17 E-value=1.5e+02 Score=23.92 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=36.2
Q ss_pred CCCCeEEEE---------ECCCCchHHHHHHHHhCCCeEEEEeCCCC---------CHHHHccCCCCEEEECC
Q 032797 22 NNKNPIIVI---------DNYDSFTYNLCQYMGELGYHFEVYRNDEL---------TVEELKRKNPRGVLISP 76 (133)
Q Consensus 22 ~~~~~i~vi---------d~~~~~~~~i~~~l~~~G~~~~v~~~~~~---------~~~~l~~~~~DgvIl~G 76 (133)
..+.+|+|+ |.++|-...+.+.|.+.|+++.++.+... +.++.. .++|++|+.-
T Consensus 351 ~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~-~~ad~vvi~t 422 (478)
T 3g79_A 351 MDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVV-RNADAIVVLA 422 (478)
T ss_dssp STTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHH-TTCSEEEECS
T ss_pred CCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHH-hcCCEEEEec
Confidence 456799999 34445556688999999999988755321 122211 3799999954
No 369
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=30.13 E-value=79 Score=23.39 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=23.1
Q ss_pred ccCCCCCeEEEEECCC-----C---chHHHHHHHHhCCCeEEEEeCC
Q 032797 19 KSKNNKNPIIVIDNYD-----S---FTYNLCQYMGELGYHFEVYRND 57 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~-----~---~~~~i~~~l~~~G~~~~v~~~~ 57 (133)
+...++|||+++..+. + +...+.+.|.+.|.++.++...
T Consensus 15 ~~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 61 (406)
T 2gek_A 15 VPRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPA 61 (406)
T ss_dssp ------CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred ccCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4445668999986421 1 2335778888899999887543
No 370
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=29.87 E-value=46 Score=24.57 Aligned_cols=30 Identities=3% Similarity=0.117 Sum_probs=18.9
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE 52 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~ 52 (133)
.+-+|++|.........+.+...+.|..+.
T Consensus 63 ~~~~iLfVgTk~~~~~~V~~~A~~~g~~yv 92 (231)
T 3bbn_B 63 RGKQFLIVGTKNKAADSVARAAIRARCHYV 92 (231)
T ss_dssp TTCCEEEECCCTTTHHHHHHHHHHHTCEEC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHhCCccc
Confidence 445788887655555556666666676554
No 371
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=29.55 E-value=74 Score=22.02 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=35.0
Q ss_pred ccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH-----------------HHHc--cCCCCEEEECCCCC
Q 032797 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV-----------------EELK--RKNPRGVLISPGPG 79 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~-----------------~~l~--~~~~DgvIl~GG~~ 79 (133)
.....+++|+|....+..-..+.+.|.+.|+++..+.-+.... +++. -.++|.||..-|..
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 4446677877776433334568888888898876653221111 1111 12689999888866
Q ss_pred CcC
Q 032797 80 APQ 82 (133)
Q Consensus 80 ~~~ 82 (133)
...
T Consensus 96 ~~~ 98 (236)
T 3e8x_A 96 PHT 98 (236)
T ss_dssp TTS
T ss_pred CCC
Confidence 443
No 372
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=29.30 E-value=1.6e+02 Score=21.32 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=42.6
Q ss_pred CCCeEEEEECCCCchH----HHHHHHHhCCCeEEE---EeCCCCCH----HHHccCCCCEEEECCCCCCcCCchHHHHHH
Q 032797 23 NKNPIIVIDNYDSFTY----NLCQYMGELGYHFEV---YRNDELTV----EELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v---~~~~~~~~----~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i 91 (133)
...+|++|...+.+.. .+.+.+++.|.++.. ++....+. ..+...++|+|++.+.. .+....++.+
T Consensus 138 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~---~~a~~~~~~~ 214 (358)
T 3hut_A 138 GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAY---EDAAPFLRAL 214 (358)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEESCH---HHHHHHHHHH
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEccCc---hHHHHHHHHH
Confidence 5578988854334433 356677888987643 22221221 22333478998885421 1112234445
Q ss_pred HHhCCCCCEEEE
Q 032797 92 LELGPTVPLFGV 103 (133)
Q Consensus 92 ~~~~~~~PvLGI 103 (133)
++..-++|++|.
T Consensus 215 ~~~g~~~p~~~~ 226 (358)
T 3hut_A 215 RARGSALPVYGS 226 (358)
T ss_dssp HHTTCCCCEEEC
T ss_pred HHcCCCCcEEec
Confidence 555557899875
No 373
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=29.18 E-value=1.6e+02 Score=22.58 Aligned_cols=83 Identities=10% Similarity=0.157 Sum_probs=48.1
Q ss_pred cccCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCCCCCcC-------CchHH-H
Q 032797 18 KKSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-------DSGIS-L 88 (133)
Q Consensus 18 ~~~~~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG~~~~~-------d~~~~-~ 88 (133)
+..++...+|.+.+.+..+. ..+...|.+.|+++++++.. ....+.. +.|.+|+ |-- ... ..+.. +
T Consensus 141 A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Ds--a~~~~m~-~vd~Viv-GAd-~i~~nG~v~nkiGT~~i 215 (315)
T 3ecs_A 141 AVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDA--AVGYIME-KADLVIV-GAE-GVVENGGIINKIGTNQM 215 (315)
T ss_dssp HHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGG--GHHHHGG-GCSEEEE-ECS-EECTTSCEEEETTHHHH
T ss_pred HHHcCCeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehh--HHHHHHH-hCCEEEE-Cce-EEecCCCeeehhhhHHH
Confidence 34456667888877765443 34677889999999887532 2333332 6888877 431 111 12222 2
Q ss_pred HHHHHhCCCCCEEEEech
Q 032797 89 QTVLELGPTVPLFGVCMG 106 (133)
Q Consensus 89 ~~i~~~~~~~PvLGIClG 106 (133)
..+. -..++|++-.|--
T Consensus 216 Al~A-k~~~vP~~V~a~~ 232 (315)
T 3ecs_A 216 AVCA-KAQNKPFYVVAES 232 (315)
T ss_dssp HHHH-HHTTCCEEEECCG
T ss_pred HHHH-HHhCCCEEEEecc
Confidence 2222 2457999977643
No 374
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=29.16 E-value=1.3e+02 Score=20.07 Aligned_cols=78 Identities=14% Similarity=0.003 Sum_probs=44.0
Q ss_pred CeEEEEECCCCch--HHHHHHHHhCCCeEEEEeCCCCCH-HHHccC-CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCC
Q 032797 25 NPIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTV-EELKRK-NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (133)
Q Consensus 25 ~~i~vid~~~~~~--~~i~~~l~~~G~~~~v~~~~~~~~-~~l~~~-~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (133)
.+|.++..+.++. ..+...|...|..+..++.+.... ...... .=|.+|+-.-.| ......+.++.+ +++.|
T Consensus 40 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG---~t~~~~~~~~~ak~~g~~ 116 (187)
T 3sho_A 40 DHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWR---YLRDTVAALAGAAERGVP 116 (187)
T ss_dssp SEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSS---CCHHHHHHHHHHHHTTCC
T ss_pred CEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCC---CCHHHHHHHHHHHHCCCC
Confidence 4899998876653 235666778898888776321111 112211 234444322222 233445566654 57899
Q ss_pred EEEEec
Q 032797 100 LFGVCM 105 (133)
Q Consensus 100 vLGICl 105 (133)
+++|.-
T Consensus 117 vi~IT~ 122 (187)
T 3sho_A 117 TMALTD 122 (187)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 999985
No 375
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=28.92 E-value=38 Score=26.07 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=25.0
Q ss_pred CCCCEEEECC-CCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 67 KNPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 67 ~~~DgvIl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
..++|||+-| |.|+.. ..+.+.++++ ++++||.=.-
T Consensus 240 ~g~~GiVle~~G~Gn~p--~~~~~~l~~a~~~Gi~VV~~S 277 (327)
T 1o7j_A 240 HGVKGIVYAGMGAGSVS--VRGIAGMRKALEKGVVVMRST 277 (327)
T ss_dssp TTCSEEEEEEBTTTBCC--HHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEeeECCCCCC--HHHHHHHHHHHHCCceEEEEC
Confidence 4799999966 556543 4566777774 7789987554
No 376
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=28.71 E-value=1.9e+02 Score=21.89 Aligned_cols=56 Identities=9% Similarity=0.004 Sum_probs=39.2
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
...+.+++|+......-..+...|...|+.+.+......+.++.. ..+|-||..-|
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~-~~ADIVI~Avg 213 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHV-SRADLVVVAAG 213 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-HTCSEEEECCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHh-ccCCEEEECCC
Confidence 356789999987544566788888889999988865333444433 37898876544
No 377
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=28.66 E-value=1.8e+02 Score=23.21 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=36.4
Q ss_pred CCCCeEEEE---------ECCCCchHHHHHHHHhC-CCeEEEEeCCCC------CHHHHccCCCCEEEECCC
Q 032797 22 NNKNPIIVI---------DNYDSFTYNLCQYMGEL-GYHFEVYRNDEL------TVEELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vi---------d~~~~~~~~i~~~l~~~-G~~~~v~~~~~~------~~~~l~~~~~DgvIl~GG 77 (133)
..+.+|+|+ |.++|-...+.+.|.+. |+++.++.+... +.++.. .++|++||.-.
T Consensus 313 ~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~~~~~~~~~~~-~~ad~vvi~t~ 383 (431)
T 3ojo_A 313 LSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAV-KDASLVLILSD 383 (431)
T ss_dssp SSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCTTBCSTTHHHH-TTCSEEEECSC
T ss_pred cCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccccccCCHHHHH-hCCCEEEEecC
Confidence 457799999 33444455688899998 999998865311 122221 37999999654
No 378
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=28.47 E-value=1.4e+02 Score=20.30 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=20.5
Q ss_pred CeEEEEEC--C---CCchHHHH----HHHHhCC--CeEEEEeCC
Q 032797 25 NPIIVIDN--Y---DSFTYNLC----QYMGELG--YHFEVYRND 57 (133)
Q Consensus 25 ~~i~vid~--~---~~~~~~i~----~~l~~~G--~~~~v~~~~ 57 (133)
|+|++|.. . .|++..+. +.+++.| .+++++...
T Consensus 2 ~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 57888853 2 36665444 4455555 888887654
No 379
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=28.46 E-value=81 Score=21.68 Aligned_cols=46 Identities=9% Similarity=-0.071 Sum_probs=26.7
Q ss_pred ccCCCCEEEECCCCCCcCC-chHHHHHHHH-h-CCCCCEEEEechHHHHH
Q 032797 65 KRKNPRGVLISPGPGAPQD-SGISLQTVLE-L-GPTVPLFGVCMGLQCIG 111 (133)
Q Consensus 65 ~~~~~DgvIl~GG~~~~~d-~~~~~~~i~~-~-~~~~PvLGIClG~QlLa 111 (133)
...+.|.||.+..|..+.. .... ..|++ . ..++|++===-+...+.
T Consensus 79 ~~geIdlVInt~~pl~~~~h~~D~-~~IrR~A~~~~IP~~T~latA~a~v 127 (152)
T 1b93_A 79 SEGKIDVLIFFWDPLNAVPHDPDV-KALLRLATVWNIPVATNVATADFII 127 (152)
T ss_dssp HTTCCCEEEEECCTTSCCTTHHHH-HHHHHHHHHTTCCEESSHHHHHHHH
T ss_pred HCCCccEEEEcCCcccCCcccccH-HHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 3458999999988654322 2222 33444 3 67899875444444443
No 380
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=28.24 E-value=40 Score=26.02 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=25.0
Q ss_pred CCCCEEEECC-CCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 67 KNPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 67 ~~~DgvIl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
..++|||+-| |.|+.. ..+.+.++++ ++++||.=.-
T Consensus 241 ~g~~GiVle~~G~Gn~p--~~~~~~l~~a~~~Gi~VV~~S 278 (332)
T 2wlt_A 241 SHAKGVVIAGVGNGNVS--AGFLKAMQEASQMGVVIVRSS 278 (332)
T ss_dssp TTCSEEEEEEBTTTBCC--HHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEeeECCCCCC--HHHHHHHHHHHHCCCEEEEEC
Confidence 4799999966 555543 4566777774 7789987554
No 381
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.97 E-value=44 Score=25.09 Aligned_cols=45 Identities=16% Similarity=0.054 Sum_probs=33.4
Q ss_pred EEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEech--------HHHHHHHhCC
Q 032797 71 GVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG--------LQCIGEAFGD 116 (133)
Q Consensus 71 gvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIClG--------~QlLa~a~GG 116 (133)
.|++++|+.+. +...+.++++.+ +.++.+--|++| +|.++.+..|
T Consensus 110 IIlf~ds~~~~-~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 110 IVAFVCSPISD-SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp EEEEECSCCSS-CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCS
T ss_pred EEEEECCCCCC-CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcC
Confidence 57788887653 444566677765 678999999999 6888888765
No 382
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=27.95 E-value=70 Score=20.20 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=25.8
Q ss_pred CCeEEEEECCCCchH------HHHHHHHhCCCe-EEEEeCCCCCHHHHcc--CCCCEEEECC
Q 032797 24 KNPIIVIDNYDSFTY------NLCQYMGELGYH-FEVYRNDELTVEELKR--KNPRGVLISP 76 (133)
Q Consensus 24 ~~~i~vid~~~~~~~------~i~~~l~~~G~~-~~v~~~~~~~~~~l~~--~~~DgvIl~G 76 (133)
.++|+++ +..+... .+.+.+.+.|++ .++.... ..++.. .++|.||.+.
T Consensus 18 ~~kIlvv-C~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~---~~~~~~~~~~~DlIi~t~ 75 (110)
T 3czc_A 18 MVKVLTA-CGNGMGSSMVIKMKVENALRQLGVSDIESASCS---VGEAKGLASNYDIVVASN 75 (110)
T ss_dssp CEEEEEE-CCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC---HHHHHHHGGGCSEEEEET
T ss_pred CcEEEEE-CCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEee---HHHHhhccCCCcEEEECC
Confidence 3466555 3334422 244567778887 6544332 233321 3799777754
No 383
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=27.74 E-value=54 Score=25.40 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=24.6
Q ss_pred CCCCEEEECC-CCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 032797 67 KNPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 67 ~~~DgvIl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (133)
..++||||-| |.|+.. ..+.+.++++ ++++||.=+
T Consensus 244 ~g~~GiVle~~G~Gn~p--~~~~~~l~~a~~~Gi~VV~~ 280 (334)
T 3nxk_A 244 HGTKGIVVAGSGAGSIH--KNQKDVLKELLKKGLKVVVS 280 (334)
T ss_dssp TTCCEEEEEEBTTTBCC--HHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCEEEEeeECCCCCc--HHHHHHHHHHHHCCCEEEEe
Confidence 4799999965 455433 3566777775 788998865
No 384
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=27.36 E-value=1.7e+02 Score=23.03 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=50.2
Q ss_pred ccccCCCCCeEEEEECCCCchH--HHHHHHHhCCCeEEEEeCCCCCHHHH-ccCCCCEEEECCCCCCcC-------CchH
Q 032797 17 DKKSKNNKNPIIVIDNYDSFTY--NLCQYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQ-------DSGI 86 (133)
Q Consensus 17 ~~~~~~~~~~i~vid~~~~~~~--~i~~~l~~~G~~~~v~~~~~~~~~~l-~~~~~DgvIl~GG~~~~~-------d~~~ 86 (133)
.+..++...+|.+.+....+.. .....|.+.|++++++... ....+ .....|.||+ |- .... ..+.
T Consensus 200 ~A~~~gk~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Ds--a~~~~M~~~~Vd~ViV-GA-D~V~aNG~v~NKiGT 275 (374)
T 2yvk_A 200 LAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDS--MAAHTMKEKQISAVIV-GA-DRIAKNGDTANKIGT 275 (374)
T ss_dssp HHHHTTCCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGG--GHHHHHHHTTCCEEEE-CC-SEEETTCCEEEETTH
T ss_pred HHHHcCCEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehh--HHHHHhhhcCCCEEEE-Cc-cEEecCCCEEecccH
Confidence 3455667788888887665543 3567899999999988632 22332 3235888888 43 1111 2233
Q ss_pred H-HHHHHHhCCCCCEEEEec
Q 032797 87 S-LQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 87 ~-~~~i~~~~~~~PvLGICl 105 (133)
. +..+.+ ..++|++-.|-
T Consensus 276 y~lAl~Ak-~~~vPfyV~ap 294 (374)
T 2yvk_A 276 YGLAILAN-AFDIPFFVAAP 294 (374)
T ss_dssp HHHHHHHH-HTTCCEEEECC
T ss_pred HHHHHHHH-HcCCCEEEecc
Confidence 2 233322 35799999873
No 385
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=27.34 E-value=1e+02 Score=25.75 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=42.3
Q ss_pred CCeEEEEEC-CCC--c-hHHHHHHHHhCCCeEEEEeCCCCCHHHHc----cCCCCEEEECCCCCCcCCchH---HHHHHH
Q 032797 24 KNPIIVIDN-YDS--F-TYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQDSGI---SLQTVL 92 (133)
Q Consensus 24 ~~~i~vid~-~~~--~-~~~i~~~l~~~G~~~~v~~~~~~~~~~l~----~~~~DgvIl~GG~~~~~d~~~---~~~~i~ 92 (133)
..+|++.-- +|. . ...+...|+..|+++..+-.+ .+.+++. ..++|.|.+|+... + .... .++.++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~-vP~e~iv~aa~~~~~diVgLS~l~t-~-~~~~m~~~i~~Lr 174 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVM-VPAEKILRTAKEVNADLIGLSGLIT-P-SLDEMVNVAKEME 174 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSS-BCHHHHHHHHHHHTCSEEEEECCST-H-HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEEecCC-C-CHHHHHHHHHHHH
Confidence 456666522 222 2 334556788899999876554 4555542 24899999988532 1 1122 334444
Q ss_pred HhCCCCCEE
Q 032797 93 ELGPTVPLF 101 (133)
Q Consensus 93 ~~~~~~PvL 101 (133)
+...++||+
T Consensus 175 ~~g~~i~Vi 183 (579)
T 3bul_A 175 RQGFTIPLL 183 (579)
T ss_dssp HTTCCSCEE
T ss_pred HcCCCCeEE
Confidence 434467773
No 386
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=27.05 E-value=1.6e+02 Score=20.77 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=34.9
Q ss_pred CCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHc---------------cCCCCEEEECCCCCCc
Q 032797 24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELK---------------RKNPRGVLISPGPGAP 81 (133)
Q Consensus 24 ~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~~~~~~~l~---------------~~~~DgvIl~GG~~~~ 81 (133)
.++|+|... +|. ..+.+.|.+.|+++..+.-.....+.+. ..++|.||-+.|+...
T Consensus 5 ~~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~ 76 (286)
T 3ius_A 5 TGTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAPDSG 76 (286)
T ss_dssp CCEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCCBTT
T ss_pred cCcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCcccc
Confidence 468888873 664 4588888888988876543211111110 2368999988876543
No 387
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=26.86 E-value=99 Score=22.44 Aligned_cols=51 Identities=16% Similarity=0.078 Sum_probs=31.7
Q ss_pred CCeEEEEECCCCch--------HHHHHHHHhCCCeEEEEeCCCCCHHHHcc-CCCCEEEEC
Q 032797 24 KNPIIVIDNYDSFT--------YNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLIS 75 (133)
Q Consensus 24 ~~~i~vid~~~~~~--------~~i~~~l~~~G~~~~v~~~~~~~~~~l~~-~~~DgvIl~ 75 (133)
.|||+|+-.+.|-. ..+.++|++.|+++..+..+.. ...+.. .++|.++..
T Consensus 3 ~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~-~~~~~~~~~~D~v~~~ 62 (307)
T 3r5x_A 3 AMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEK-MDLIEKAKDIDFALLA 62 (307)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSG-GGHHHHTTTCSEEEEC
T ss_pred CcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCc-hhHHHhccCCCEEEEe
Confidence 57899997654332 2356778888999888776421 111221 378988874
No 388
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=26.85 E-value=2.5e+02 Score=22.62 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=34.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC--HHHHc---------------cCCCCEEEECCCC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT--VEELK---------------RKNPRGVLISPGP 78 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~--~~~l~---------------~~~~DgvIl~GG~ 78 (133)
..++|.+|.-+.+--..+.+.|.+.|+++........+ .+.+. ..++|.||+|+|-
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi 90 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAM 90 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTC
T ss_pred cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCc
Confidence 44678888776555555778888888888776542111 11111 1258999999874
No 389
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=26.80 E-value=95 Score=23.60 Aligned_cols=75 Identities=9% Similarity=0.095 Sum_probs=40.4
Q ss_pred CeEEEEECCCCc---hHHHHHHHHhCCCeEEEEe-CCCCCHHH---H---ccCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 032797 25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEVYR-NDELTVEE---L---KRKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (133)
Q Consensus 25 ~~i~vid~~~~~---~~~i~~~l~~~G~~~~v~~-~~~~~~~~---l---~~~~~DgvIl~GG~~~~~d~~~~~~~i~~~ 94 (133)
.|++||-..... ...+.+.|++.|.++.++. ..+.+.+. + ...++|.||--|| |++-|......+.
T Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~d~IIavGG-Gsv~D~aK~vA~~--- 110 (354)
T 3ce9_A 35 KRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTNAFKIPAEVDALIGIGG-GKAIDAVKYMAFL--- 110 (354)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHHHTTSCTTCCEEEEEES-HHHHHHHHHHHHH---
T ss_pred CeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHhhhcCCCEEEEECC-hHHHHHHHHHHhh---
Confidence 477777432222 2345566777888876554 22233322 2 2347899995555 4554544443322
Q ss_pred CCCCCEEEEe
Q 032797 95 GPTVPLFGVC 104 (133)
Q Consensus 95 ~~~~PvLGIC 104 (133)
+++|+..|=
T Consensus 111 -~~~p~i~IP 119 (354)
T 3ce9_A 111 -RKLPFISVP 119 (354)
T ss_dssp -HTCCEEEEE
T ss_pred -cCCCEEEec
Confidence 357877663
No 390
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=26.70 E-value=44 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCCCEEEECC-CCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 67 KNPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 67 ~~~DgvIl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
..++|||+-| |.|+.. ..+.+.++++ ++++||.=.-
T Consensus 238 ~g~~GiVle~~G~Gn~p--~~~~~~l~~a~~~gi~VV~~S 275 (330)
T 1wsa_A 238 AGAKGIIHAGMGNGNPF--PLTQNALEKAAKSGVVVARSS 275 (330)
T ss_dssp TTCSEEEEEEBTTTBCC--HHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEeeECCCCCC--HHHHHHHHHHHHCCCEEEEEC
Confidence 4799999966 555543 4566777774 7789987554
No 391
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=26.65 E-value=23 Score=26.91 Aligned_cols=82 Identities=7% Similarity=0.038 Sum_probs=42.3
Q ss_pred CCCeEEEEECCCCchHHHHH----HHHhCCCeEEEE-eCCC-CCHH-HHcc--CCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797 23 NKNPIIVIDNYDSFTYNLCQ----YMGELGYHFEVY-RNDE-LTVE-ELKR--KNPRGVLISPGPGAPQDSGISLQTVLE 93 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~----~l~~~G~~~~v~-~~~~-~~~~-~l~~--~~~DgvIl~GG~~~~~d~~~~~~~i~~ 93 (133)
...+++||...+.|...+.+ .+++.|.++.-. .+.. .+.. .+.. .++|+|++.+.+ .+...+.+.++.
T Consensus 121 g~k~vail~~~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~~d~~~~l~~i~~~pDaV~~~~~~---~~~~~i~~~~~~ 197 (325)
T 2h4a_A 121 GVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAVASP---TELAEXKGYLTN 197 (325)
T ss_dssp TCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHSTTCCCEEEECCCH---HHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCcHHHHHHHHHHHHHHHcCCCcceeEecCCHHHHHHHHHhcCCCCCEEEEeCCH---HHHhhhhhhHhh
Confidence 34577777555667655544 445556554322 2221 1111 1221 489999996542 112223334444
Q ss_pred hCCCCCEEEEechH
Q 032797 94 LGPTVPLFGVCMGL 107 (133)
Q Consensus 94 ~~~~~PvLGIClG~ 107 (133)
...+.|++|--.-.
T Consensus 198 ~g~~~pl~~~~~~~ 211 (325)
T 2h4a_A 198 IVPNLAIYASSRAS 211 (325)
T ss_dssp TCTTCEEEECGGGC
T ss_pred cCCCCCEEEecccc
Confidence 45689999975433
No 392
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=26.34 E-value=81 Score=22.88 Aligned_cols=29 Identities=7% Similarity=0.351 Sum_probs=17.4
Q ss_pred eEEEEECCCC-chHHHHHHHHhCCCeEEEE
Q 032797 26 PIIVIDNYDS-FTYNLCQYMGELGYHFEVY 54 (133)
Q Consensus 26 ~i~vid~~~~-~~~~i~~~l~~~G~~~~v~ 54 (133)
++++|--..+ .-..+.+.|.+.|+.+.+.
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~~V~~~ 59 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGFDIAIT 59 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCeEEEE
Confidence 4455543333 3455777777788877655
No 393
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=26.32 E-value=1.7e+02 Score=22.72 Aligned_cols=84 Identities=12% Similarity=0.064 Sum_probs=49.3
Q ss_pred ccccCCCCCeEEEEECCCCchH--HHHHHHHhCCCeEEEEeCCCCCHHHH-ccCCCCEEEECCCCCCcC-------CchH
Q 032797 17 DKKSKNNKNPIIVIDNYDSFTY--NLCQYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQ-------DSGI 86 (133)
Q Consensus 17 ~~~~~~~~~~i~vid~~~~~~~--~i~~~l~~~G~~~~v~~~~~~~~~~l-~~~~~DgvIl~GG~~~~~-------d~~~ 86 (133)
.++.++...+|.+.+....+.. .....|.+.|++++++... ....+ .....|.+|+ |- .... ..+.
T Consensus 175 ~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Ds--a~~~~M~~~~Vd~Viv-GA-d~V~aNG~v~NKiGT 250 (347)
T 1t9k_A 175 AAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDN--MAGWLMKRGLIDAVVV-GA-DRIALNGDTANKIGT 250 (347)
T ss_dssp HHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGG--GHHHHHHTTCCSEEEE-CC-SEEETTSCEEEETTH
T ss_pred HHHHCCCeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEehh--HHHHHhhcCCCCEEEE-Cc-cEEecCCCEEecccH
Confidence 3445566778888877665543 3577899999999888632 23333 3235898888 43 1111 2232
Q ss_pred HHHHHHHhCCCCCEEEEe
Q 032797 87 SLQTVLELGPTVPLFGVC 104 (133)
Q Consensus 87 ~~~~i~~~~~~~PvLGIC 104 (133)
..-.+-.-..++|++-.|
T Consensus 251 ~~lAl~Ak~~~vPfyV~a 268 (347)
T 1t9k_A 251 YSLAVLAKRNNIPFYVAA 268 (347)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHcCCCEEEec
Confidence 222222224579999987
No 394
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=26.24 E-value=46 Score=25.61 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=25.0
Q ss_pred CCCCEEEECC-CCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 67 KNPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 67 ~~~DgvIl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
..++|||+-| |.|+.. ..+.+.++++ ++++||.=.-
T Consensus 234 ~g~~GiVl~~~G~Gn~p--~~~~~~l~~a~~~gi~VV~~S 271 (326)
T 1nns_A 234 AGYDGIVSAGVGNGNLY--KSVFDTLATAAKTGTAVVRSS 271 (326)
T ss_dssp TTCSEEEEEEBTTTBCC--HHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEeeECCCCCC--HHHHHHHHHHHHCCCEEEEEC
Confidence 4799999966 555543 4566777765 7789987554
No 395
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=26.09 E-value=2.1e+02 Score=21.59 Aligned_cols=56 Identities=7% Similarity=0.129 Sum_probs=39.5
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
...+.+++|+......-..+...|...|+.+.+......+.++.. ...|-||..=|
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~-~~ADIVI~Avg 212 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYT-RQADLIIVAAG 212 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-TTCSEEEECSS
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHh-hcCCEEEECCC
Confidence 356789999987544567788889999999988865433444443 47898887544
No 396
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*
Probab=25.99 E-value=1.1e+02 Score=24.04 Aligned_cols=95 Identities=8% Similarity=0.008 Sum_probs=50.9
Q ss_pred cccccccccCCCCCeEEEEECCCCchHHHHHHHHhC---------CCeEEEEeCCCCCHHHHc--cCCCCEEEECCCC--
Q 032797 12 SLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGEL---------GYHFEVYRNDELTVEELK--RKNPRGVLISPGP-- 78 (133)
Q Consensus 12 ~~~~~~~~~~~~~~~i~vid~~~~~~~~i~~~l~~~---------G~~~~v~~~~~~~~~~l~--~~~~DgvIl~GG~-- 78 (133)
.||+.........+|+.+|-.+.. -.++++.+... ++++..+..+..++..+. ....-+-.+++|.
T Consensus 3 ~n~~~~~~~~~~~~ki~vIGvGga-G~~ivd~~~~~~~~~~~~~~~~~~iaiNTd~~~L~~~~~~~~~~~g~~~~~g~g~ 81 (389)
T 4ei7_A 3 GNFSEIESQGNISLKFGFLGLGMG-GCAIAAECANKETQIKNNKYPYRAILVNTNSQDFNKIEIKNTGNVRKIQLEGYEQ 81 (389)
T ss_dssp CCCHHHHHHCCCSSCEEEEEEHHH-HHHHHHHHHTCCCCCTTCSCCCEEEEEECCCHHHHHSCCCSCSSEEEEECTTCCC
T ss_pred CchhhhhhccccCceEEEEEECCc-hHHHHHHHHhcccccccccccccEEEEECCHHHHhhccCcchhhhhhhccCCCCC
Confidence 467777777788899999987543 34567766543 345555665422222221 1122345555543
Q ss_pred --C-CcCC--------chHHHHHHHHhCCCCCEEEEechH
Q 032797 79 --G-APQD--------SGISLQTVLELGPTVPLFGVCMGL 107 (133)
Q Consensus 79 --~-~~~d--------~~~~~~~i~~~~~~~PvLGIClG~ 107 (133)
| +|.- .....+.|+..-.+.=++-||.||
T Consensus 82 GaG~~p~~G~~aa~e~~~~i~~~l~~~~~~~d~vfi~ag~ 121 (389)
T 4ei7_A 82 GAARNPQVGEEAFVKHETKIFEAVKQEFEDRDFIWITCGL 121 (389)
T ss_dssp TTCCCHHHHHHHHHHTHHHHHHHHHHHTTTCSEEEEEEET
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhcCCccEEEEEecC
Confidence 2 2320 011233444322356688999887
No 397
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=25.92 E-value=2e+02 Score=21.30 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=20.4
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEV 53 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v 53 (133)
.++||.||..++.......+.++..+.++.-
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lva 32 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDTGNCLVS 32 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence 3578899987544556667777777766543
No 398
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=25.83 E-value=2.6e+02 Score=22.47 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=50.4
Q ss_pred CCeEEEEECCCCchH---HHHHHHHhC--CCeEEEEeCCCCCHHH---HccCCCCEEEECCCCCCcCCc--------hH-
Q 032797 24 KNPIIVIDNYDSFTY---NLCQYMGEL--GYHFEVYRNDELTVEE---LKRKNPRGVLISPGPGAPQDS--------GI- 86 (133)
Q Consensus 24 ~~~i~vid~~~~~~~---~i~~~l~~~--G~~~~v~~~~~~~~~~---l~~~~~DgvIl~GG~~~~~d~--------~~- 86 (133)
+..+++||....+.. ...+.+++. +..+..-.. .+.++ +....+|+|++++|+++.... ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v--~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~ 318 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNI--ATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQI 318 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEE--CSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHH
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeee--CcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHH
Confidence 345667765444433 234444442 333322111 23332 333589999997777754211 11
Q ss_pred -HHHHHHH-h-CCCCCEEE---EechHHHH-HHHhCCeeee
Q 032797 87 -SLQTVLE-L-GPTVPLFG---VCMGLQCI-GEAFGDCAFS 120 (133)
Q Consensus 87 -~~~~i~~-~-~~~~PvLG---IClG~QlL-a~a~GG~v~~ 120 (133)
.+..+.+ + ..++|+++ |..+-++. +.++|+...-
T Consensus 319 ~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~ 359 (490)
T 4avf_A 319 SAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVM 359 (490)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeee
Confidence 1222222 3 34799996 77777766 6788886543
No 399
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=25.68 E-value=1.9e+02 Score=20.98 Aligned_cols=65 Identities=9% Similarity=-0.069 Sum_probs=35.0
Q ss_pred ccccCCCCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCC------------CCCHHHHc--cCCCCEEEECCCCCCc
Q 032797 17 DKKSKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRND------------ELTVEELK--RKNPRGVLISPGPGAP 81 (133)
Q Consensus 17 ~~~~~~~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~~~~------------~~~~~~l~--~~~~DgvIl~GG~~~~ 81 (133)
+.+....+++|+|... .++. ..+++.|.+.|+++..+... ..+.+.+. ..++|.||-..+....
T Consensus 12 ~~~~~~~~~~vlVtGa-tG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~ 90 (347)
T 4id9_A 12 SGLVPRGSHMILVTGS-AGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMSW 90 (347)
T ss_dssp ---------CEEEETT-TSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCCCS
T ss_pred CcccccCCCEEEEECC-CChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcccCc
Confidence 3344455667777754 4554 45888888889888765321 11222222 1379999998886644
Q ss_pred C
Q 032797 82 Q 82 (133)
Q Consensus 82 ~ 82 (133)
.
T Consensus 91 ~ 91 (347)
T 4id9_A 91 A 91 (347)
T ss_dssp S
T ss_pred c
Confidence 3
No 400
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=25.63 E-value=1.4e+02 Score=19.68 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=26.4
Q ss_pred HccCCCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCEEEEechHHHHHH
Q 032797 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIGE 112 (133)
Q Consensus 64 l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~--~~~~~PvLGIClG~QlLa~ 112 (133)
+.+.++|.||.+..++. . ...--..||+ .+.++|++===-+..++.+
T Consensus 92 i~~g~i~lVInt~~~~~-~-~~~d~~~iRR~Av~~~IP~~T~~~tA~a~~~ 140 (143)
T 2yvq_A 92 IRDGSIDLVINLPNNNT-K-FVHDNYVIRRTAVDSGIPLLTNFQVTKLFAE 140 (143)
T ss_dssp HHTTSCCEEEECCCCCG-G-GHHHHHHHHHHHHHTTCCEECSHHHHHHHHH
T ss_pred HHCCCceEEEECCCCCC-c-CCccHHHHHHHHHHhCCCeEcCHHHHHHHHH
Confidence 44558999999887631 1 1111234555 3688998754444444433
No 401
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=25.32 E-value=56 Score=23.46 Aligned_cols=42 Identities=7% Similarity=0.253 Sum_probs=18.6
Q ss_pred ccccccccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEE
Q 032797 13 LYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (133)
Q Consensus 13 ~~~~~~~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~ 54 (133)
.|..+..+...+.+++|.....+.-..+.+.|.+.|+.+.+.
T Consensus 18 ~~~~~~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~ 59 (271)
T 4iin_A 18 LYFQSNAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWIN 59 (271)
T ss_dssp ------CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred ehhhhhhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 334344444444444444333333445666676677766544
No 402
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=25.09 E-value=57 Score=25.23 Aligned_cols=65 Identities=14% Similarity=0.310 Sum_probs=36.5
Q ss_pred CeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCC--CCCHHH-------HccCCCCEEEECCCCCCcCCchHHHHH
Q 032797 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGISLQT 90 (133)
Q Consensus 25 ~~i~vid~~~----~~~~~i~~~l~~~G~~~~v~~~~--~~~~~~-------l~~~~~DgvIl~GG~~~~~d~~~~~~~ 90 (133)
.|++|+-... ++...+.+.|++.|+++.+++.- +.+.+. +...++|.||--|| |++-|.......
T Consensus 32 ~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA~ 109 (386)
T 1rrm_A 32 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG-GSPQDTCKAIGI 109 (386)
T ss_dssp CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHHHHH
T ss_pred CEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHHHHHH
Confidence 5788773211 23445667788889888766421 123322 22347899995565 455565544333
No 403
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=25.03 E-value=77 Score=23.72 Aligned_cols=59 Identities=7% Similarity=0.004 Sum_probs=32.3
Q ss_pred cccccCCCCCeEEEEECCCC-c---hHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEEC
Q 032797 16 DDKKSKNNKNPIIVIDNYDS-F---TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (133)
Q Consensus 16 ~~~~~~~~~~~i~vid~~~~-~---~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~ 75 (133)
+.+.++...|||+++-.... . ...+.+.|++.|.++.++.... ..+.+...+++.+-+.
T Consensus 12 ~~~~~~~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~-~~~~~~~~g~~~~~~~ 74 (412)
T 3otg_A 12 SSGHIEGRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEG-FAGTLRKLGFEPVATG 74 (412)
T ss_dssp ------CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGG-GHHHHHHTTCEEEECC
T ss_pred ccCCcccceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHH-HHHHHHhcCCceeecC
Confidence 45566777899998864321 1 1247888999999998876531 1222333355555554
No 404
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=24.93 E-value=2.3e+02 Score=21.64 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=40.1
Q ss_pred ccCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 19 ~~~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
.-...+.+++||....-.-..+...|...++.+++.+....+..+.. ...|-||..=|
T Consensus 174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T~dl~~~~-~~ADIvV~A~G 231 (303)
T 4b4u_A 174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELV-KQADIIVGAVG 231 (303)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH-HTCSEEEECSC
T ss_pred CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCCCCHHHHh-hcCCeEEeccC
Confidence 34567789999976434456677788889999998876534455543 37898887555
No 405
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=24.89 E-value=2e+02 Score=20.87 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=42.0
Q ss_pred CCCCeEEEE-ECCCCchHHHHHHHHh-CCCeEEEE---eCCCCC----HHHHccCCCCEEEECCCCCCcCCchHHHHHHH
Q 032797 22 NNKNPIIVI-DNYDSFTYNLCQYMGE-LGYHFEVY---RNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (133)
Q Consensus 22 ~~~~~i~vi-d~~~~~~~~i~~~l~~-~G~~~~v~---~~~~~~----~~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~ 92 (133)
....+++++ ++.+.|...+.+.+++ .|.++... +....+ ...+...++|.|++.+.+ .+...+.+.++
T Consensus 141 ~~~~~~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~---~~~~~~~~~~~ 217 (353)
T 4gnr_A 141 LNAKKVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYY---NEAGKIVNQAR 217 (353)
T ss_dssp SCCSEEEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHTSCCSEEECCSCH---HHHHHHHHHHH
T ss_pred cCCcEEEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecCc---HHHHHHHHHHH
Confidence 334455444 6555577777776654 67765432 222222 223445689999886532 12222334444
Q ss_pred HhCCCCCEEEE
Q 032797 93 ELGPTVPLFGV 103 (133)
Q Consensus 93 ~~~~~~PvLGI 103 (133)
+..-+.|+++.
T Consensus 218 ~~g~~~~~~~~ 228 (353)
T 4gnr_A 218 GMGIDKPIVGG 228 (353)
T ss_dssp HTTCCSCEEEC
T ss_pred HcCCCCcEEEe
Confidence 44456788774
No 406
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=24.83 E-value=63 Score=23.99 Aligned_cols=31 Identities=23% Similarity=0.605 Sum_probs=19.5
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEec
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGICl 105 (133)
.+|.+|+.. |.. ....|++. .-++|+.|||-
T Consensus 114 ~PdlliV~D----p~~---e~~ai~EA~~l~IPvIalvD 145 (241)
T 2xzm_B 114 EPRVLIVTD----PRS---DFQAIKEASYVNIPVIALCD 145 (241)
T ss_dssp CCSEEEESC----TTT---THHHHHHHTTTTCCEEECCC
T ss_pred CCCEEEEEC----CCc---chHHHHHHHHhCCCEEEEec
Confidence 467777642 222 23456664 67899999994
No 407
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=24.67 E-value=1e+02 Score=23.11 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=32.3
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--C-----HHHHccCCCCEEEECCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--T-----VEELKRKNPRGVLISPG 77 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~--~-----~~~l~~~~~DgvIl~GG 77 (133)
...+.||++|.+. .+.+.+++.++++.++.-+.. + .+.+.+ .+|.+++||.
T Consensus 138 ~~~g~kV~vIG~f-----P~i~~~~~~~~~l~V~E~~p~~g~~p~~~~~~~lp-~~D~viiTgs 195 (270)
T 3l5o_A 138 EVKGKKVGVVGHF-----PHLESLLEPICDLSILEWSPEEGDYPLPASEFILP-ECDYVYITCA 195 (270)
T ss_dssp TTTTSEEEEESCC-----TTHHHHHTTTSEEEEEESSCCTTCEEGGGHHHHGG-GCSEEEEETH
T ss_pred ccCCCEEEEECCc-----hhHHHHHhcCCCEEEEECCCCCCCCChhHHHHhhc-cCCEEEEEee
Confidence 3456899999873 234556677888888754311 1 112222 7899999986
No 408
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=24.66 E-value=1.8e+02 Score=21.14 Aligned_cols=78 Identities=8% Similarity=0.101 Sum_probs=42.0
Q ss_pred CCCeEEEEECCCCchH----HHHHHHHhCCCeEEE---EeCCCCCH----HHHccCCCCEEEECCCCCCcCCchHHHHHH
Q 032797 23 NKNPIIVIDNYDSFTY----NLCQYMGELGYHFEV---YRNDELTV----EELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v---~~~~~~~~----~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i 91 (133)
...+|++|...+.+.. .+.+.+++.|.++.. ++....+. ..+...++|.|++.+.. .+....++.+
T Consensus 137 g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~---~~a~~~~~~~ 213 (356)
T 3ipc_A 137 KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLH---TEAGLIIRQA 213 (356)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCH---HHHHHHHHHH
T ss_pred CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCc---hHHHHHHHHH
Confidence 4578988855444433 355677778876532 22221221 22334579999985531 1122234445
Q ss_pred HHhCCCCCEEEE
Q 032797 92 LELGPTVPLFGV 103 (133)
Q Consensus 92 ~~~~~~~PvLGI 103 (133)
++..-.+|++|.
T Consensus 214 ~~~g~~~~~~~~ 225 (356)
T 3ipc_A 214 ADQGLKAKLVSG 225 (356)
T ss_dssp HHHTCCCEEEEC
T ss_pred HHCCCCCcEEEe
Confidence 555556888774
No 409
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=24.49 E-value=18 Score=30.26 Aligned_cols=16 Identities=13% Similarity=-0.168 Sum_probs=10.8
Q ss_pred CCCCCeEEEEECCCCc
Q 032797 21 KNNKNPIIVIDNYDSF 36 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~ 36 (133)
....++|+|+..+..-
T Consensus 69 ~~~~~~igIltsGGda 84 (555)
T 2f48_A 69 FSKALNIGIILSGGPA 84 (555)
T ss_dssp CCSCCEEEEEEBSSCC
T ss_pred cCCCcEEEEECcCCCc
Confidence 4455789999776543
No 410
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.44 E-value=1.3e+02 Score=21.63 Aligned_cols=30 Identities=17% Similarity=0.426 Sum_probs=18.6
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEe
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (133)
.+|.+|++ +|..+. ..+++. .-++|+.|+|
T Consensus 111 ~Pdllvv~----Dp~~d~---~ai~EA~~l~IP~Ial~ 141 (202)
T 3j20_B 111 EPDVLIVT----DPRADH---QAMREAVEIGIPIVALV 141 (202)
T ss_dssp CCSEEEES----CTTTSH---HHHHHHHHHTCCEEEEE
T ss_pred CCCeEEEe----CCccch---HHHHHHHHcCCCEEEEE
Confidence 57788775 333333 344443 3469999999
No 411
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=24.17 E-value=1.1e+02 Score=22.78 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=23.5
Q ss_pred CCeEEEEECC------CC---chHHHHHHHHhCCCeEEEEeC
Q 032797 24 KNPIIVIDNY------DS---FTYNLCQYMGELGYHFEVYRN 56 (133)
Q Consensus 24 ~~~i~vid~~------~~---~~~~i~~~l~~~G~~~~v~~~ 56 (133)
+|||+++... ++ +...+.+.|.+.|.+++++..
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~ 43 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 43 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5899998532 11 234578889999999998753
No 412
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=24.09 E-value=1.8e+02 Score=19.97 Aligned_cols=54 Identities=13% Similarity=-0.066 Sum_probs=28.9
Q ss_pred CeEEEEEC----CCCchHHHHHHHHhCCCeEEEEeCCC-CCHHHHc--cCCCCEEEECCCCC
Q 032797 25 NPIIVIDN----YDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELK--RKNPRGVLISPGPG 79 (133)
Q Consensus 25 ~~i~vid~----~~~~~~~i~~~l~~~G~~~~v~~~~~-~~~~~l~--~~~~DgvIl~GG~~ 79 (133)
|||++|.. ..|+.+.+.....+...+++++.... .+..+.. -..+|.||+ +.|.
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~~~~v~v~dL~~~~D~~~~~~~l~~aD~iV~-~~P~ 61 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIENFSNVTWHPLVADFNVEQEQSLLLQNDRIIL-EFPL 61 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTTCTTEEEEECCTTCCHHHHHHHHHTCSEEEE-EEEC
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhcCCCEEEEECCCcccHHHHHHHHHhCCEEEE-ECCh
Confidence 57887743 24566555544444345677766542 2222211 137999999 4443
No 413
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=23.89 E-value=2.3e+02 Score=21.28 Aligned_cols=55 Identities=11% Similarity=0.253 Sum_probs=38.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
..+.+++|+......-..+...|...|+.+.+......+.++.. ..+|-||..=|
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~-~~ADIVI~Avg 202 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMT-RSSKIVVVAVG 202 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-HHSSEEEECSS
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhh-ccCCEEEECCC
Confidence 56789999987544566788888889999988865433444433 26897776444
No 414
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=23.86 E-value=2.2e+02 Score=21.02 Aligned_cols=31 Identities=6% Similarity=-0.038 Sum_probs=20.7
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEE
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEV 53 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v 53 (133)
.++||.||..+........+.+++.+.++.-
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lva 32 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEVGGVLVA 32 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEECCChHHHHHHHHHHHhCCCEEEE
Confidence 3578999987544555667777777766543
No 415
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=23.34 E-value=10 Score=22.51 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=9.2
Q ss_pred cccccccccccc
Q 032797 8 PISKSLYLDDKK 19 (133)
Q Consensus 8 ~~~~~~~~~~~~ 19 (133)
--||.||+||+.
T Consensus 16 gTSKiNYlDPRI 27 (62)
T 2b9s_B 16 GTSKINYIDPRI 27 (62)
T ss_dssp HHHHHHTSCHHH
T ss_pred ccchhhccCchh
Confidence 348888999874
No 416
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=23.25 E-value=57 Score=26.41 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=17.6
Q ss_pred HHHHHhCCCCCEEEEechHHH---HHHHhCCe
Q 032797 89 QTVLELGPTVPLFGVCMGLQC---IGEAFGDC 117 (133)
Q Consensus 89 ~~i~~~~~~~PvLGIClG~Ql---La~a~GG~ 117 (133)
..+.++ .+++++|+|.+.|. ++..+|-.
T Consensus 167 ~a~~~~-~~~k~vGlC~~~~~~~~~~~~Lg~~ 197 (477)
T 3u95_A 167 QAVRRW-TGANIIGFCHGVAGVYEVFERLGLD 197 (477)
T ss_dssp HHHHHH-HCCCEEEECCGGGHHHHHHHHTTCC
T ss_pred HHHHHh-CCCCeEEECCCHHHHHHHHHHhCCC
Confidence 344444 34799999996554 45556653
No 417
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=23.13 E-value=1.6e+02 Score=19.08 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~ 56 (133)
..+++|+|+.. +.....+.+.|.+.|.++.++..
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~ 50 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDK 50 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEEC
Confidence 34568888864 34455688889889998887754
No 418
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=23.07 E-value=1.5e+02 Score=23.05 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=49.4
Q ss_pred CchHHHHHHHHh-CCCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCCch----HHHHHHHH-hCCCCCEE---E
Q 032797 35 SFTYNLCQYMGE-LGYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLF---G 102 (133)
Q Consensus 35 ~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d~~----~~~~~i~~-~~~~~PvL---G 102 (133)
.++....+++++ .+..+.+.-. .+.++. .....|+|+++|..+...+.. ..+..+++ +..++||+ |
T Consensus 215 ~~~~~~i~~lr~~~~~PvivK~v--~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GG 292 (368)
T 2nli_A 215 KISPRDIEEIAGHSGLPVFVKGI--QHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSG 292 (368)
T ss_dssp BCCHHHHHHHHHHSSSCEEEEEE--CSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSS
T ss_pred hhhHHHHHHHHHHcCCCEEEEcC--CCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECC
Confidence 455566778876 5655544322 233332 335899999987544322221 12233333 45579999 6
Q ss_pred EechHHHH-HHHhCCeeee
Q 032797 103 VCMGLQCI-GEAFGDCAFS 120 (133)
Q Consensus 103 IClG~QlL-a~a~GG~v~~ 120 (133)
|-.|..++ +.++|++..-
T Consensus 293 I~~g~D~~kalalGAd~V~ 311 (368)
T 2nli_A 293 VRRGEHVAKALASGADVVA 311 (368)
T ss_dssp CCSHHHHHHHHHTTCSEEE
T ss_pred CCCHHHHHHHHHcCCCEEE
Confidence 88888888 5588886553
No 419
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=23.04 E-value=80 Score=23.11 Aligned_cols=34 Identities=6% Similarity=0.190 Sum_probs=23.0
Q ss_pred CCeEEEEECCC-CchH---HHHHHHHhCCCeEEEEeCC
Q 032797 24 KNPIIVIDNYD-SFTY---NLCQYMGELGYHFEVYRND 57 (133)
Q Consensus 24 ~~~i~vid~~~-~~~~---~i~~~l~~~G~~~~v~~~~ 57 (133)
.|||+++..+. +... .+.+.|.+.|.++.++...
T Consensus 6 ~mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~ 43 (364)
T 1f0k_A 6 GKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTA 43 (364)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred CcEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEecC
Confidence 47999886432 1222 4777888899999988654
No 420
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.93 E-value=1.1e+02 Score=20.26 Aligned_cols=88 Identities=17% Similarity=0.094 Sum_probs=46.5
Q ss_pred CeEEEEECCCCch--HHHHHHHHhCCCeEEEEeCCCCCHHHHcc-CCCCEEE-ECCCCCCcCCchHHHHHHHHh-CCCCC
Q 032797 25 NPIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVL-ISPGPGAPQDSGISLQTVLEL-GPTVP 99 (133)
Q Consensus 25 ~~i~vid~~~~~~--~~i~~~l~~~G~~~~v~~~~~~~~~~l~~-~~~DgvI-l~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (133)
.+|.++..+.++. ..+...|...|..+..+...+....++.. ..=|.+| +|-+ | ......+.++.+ +++.|
T Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~s-G---~t~~~~~~~~~ak~~g~~ 125 (183)
T 2xhz_A 50 GKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNS-G---ESSEITALIPVLKRLHVP 125 (183)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSS-S---CCHHHHHHHHHHHTTTCC
T ss_pred CeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCC-C---CCHHHHHHHHHHHHCCCC
Confidence 4899998865552 23445566678877655321100111111 1235444 4333 2 233445666665 67899
Q ss_pred EEEEec-hHHHHHHHhCC
Q 032797 100 LFGVCM-GLQCIGEAFGD 116 (133)
Q Consensus 100 vLGICl-G~QlLa~a~GG 116 (133)
+++|+- ..--|+...--
T Consensus 126 vi~IT~~~~s~la~~ad~ 143 (183)
T 2xhz_A 126 LICITGRPESSMARAADV 143 (183)
T ss_dssp EEEEESCTTSHHHHHSSE
T ss_pred EEEEECCCCChhHHhCCE
Confidence 999986 33445554333
No 421
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=22.91 E-value=2.5e+02 Score=21.22 Aligned_cols=56 Identities=7% Similarity=0.056 Sum_probs=39.1
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
...+.+++||......-..+...|...|+.+.+......+.++.. ..+|.||..=|
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~-~~ADIVI~Avg 213 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHT-TKADILIVAVG 213 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH-TTCSEEEECCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhc-ccCCEEEECCC
Confidence 356789999976544567788888899999888764323444443 47998887554
No 422
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=22.82 E-value=1.9e+02 Score=19.97 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=21.1
Q ss_pred HHhCCCeEEEEeCCCCC--HHHHc--cCCCCEEEECCCC
Q 032797 44 MGELGYHFEVYRNDELT--VEELK--RKNPRGVLISPGP 78 (133)
Q Consensus 44 l~~~G~~~~v~~~~~~~--~~~l~--~~~~DgvIl~GG~ 78 (133)
..+.|++++.+..+... .+.+. ..++|++||=+|.
T Consensus 44 a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA 82 (156)
T 1gtz_A 44 AAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAA 82 (156)
T ss_dssp HHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTT
T ss_pred HHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchh
Confidence 34579999988875321 11121 1259999996653
No 423
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=22.74 E-value=1.6e+02 Score=18.90 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=31.2
Q ss_pred CeEE-EEECCCCchHHH--HHHH----HhCCCeEEEEe--C----CCCCHHHHccCCCCEEEECCC
Q 032797 25 NPII-VIDNYDSFTYNL--CQYM----GELGYHFEVYR--N----DELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 25 ~~i~-vid~~~~~~~~i--~~~l----~~~G~~~~v~~--~----~~~~~~~l~~~~~DgvIl~GG 77 (133)
|+|+ |..+..+..+.+ .+.| ++.|+++.+-. . +..+.+++. ..|.||+.+-
T Consensus 3 mkivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~--~AD~VIia~d 66 (106)
T 2m1z_A 3 RKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVN--IGEVVIFAVD 66 (106)
T ss_dssp CEEEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHH--HCSEEEEEES
T ss_pred ccEEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHh--hCCEEEEecc
Confidence 5655 446766665543 2344 45798877642 2 234566775 6999999653
No 424
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=22.69 E-value=1.2e+02 Score=22.33 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=23.0
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEe
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~ 55 (133)
..+|+|++++. +.......+.|.+.|+++.+..
T Consensus 5 ~~~mki~v~~~-~~~~~~~~~~L~~~g~~v~~~~ 37 (300)
T 2rir_A 5 LTGLKIAVIGG-DARQLEIIRKLTEQQADIYLVG 37 (300)
T ss_dssp CCSCEEEEESB-CHHHHHHHHHHHHTTCEEEEES
T ss_pred ccCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEe
Confidence 34578888864 3344456778888999987664
No 425
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=22.63 E-value=2.6e+02 Score=21.29 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=33.2
Q ss_pred CCCCeEEEEECCCCchH-----HHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 22 NNKNPIIVIDNYDSFTY-----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~-----~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
...|||+++ ...+..+ .+.+.|++.|.++.++.... ..+.+...+++.+-+.+.
T Consensus 18 ~~~mrIl~~-~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~-~~~~v~~~G~~~~~i~~~ 76 (441)
T 2yjn_A 18 GSHMRVVFS-SMASKSHLFGLVPLAWAFRAAGHEVRVVASPA-LTEDITAAGLTAVPVGTD 76 (441)
T ss_dssp -CCCEEEEE-CCSCHHHHTTTHHHHHHHHHTTCEEEEEECGG-GHHHHHTTTCCEEECSCC
T ss_pred CCccEEEEE-cCCCcchHhHHHHHHHHHHHCCCeEEEEeCch-hHHHHHhCCCceeecCCc
Confidence 345789888 3333332 47888999999999886532 222333346776666554
No 426
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=22.50 E-value=78 Score=24.35 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=24.5
Q ss_pred CCCCEEEECC-CCCCcCCchHHHHHHHH-h-CCCCCEEEEe
Q 032797 67 KNPRGVLISP-GPGAPQDSGISLQTVLE-L-GPTVPLFGVC 104 (133)
Q Consensus 67 ~~~DgvIl~G-G~~~~~d~~~~~~~i~~-~-~~~~PvLGIC 104 (133)
..++|||+-| |.|+.. ..+.+.+++ . ++++||.=.-
T Consensus 238 ~g~~GiVle~~G~Gn~p--~~~~~~l~~a~~~~gi~VV~~S 276 (331)
T 1agx_A 238 AGVKAIIHAGTGNGSMA--NYLVPEVRKLHDEQGLQIVRSS 276 (331)
T ss_dssp TTCSEEEEEEBTTTBCC--TTHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCEEEEeeECCCCCC--HHHHHHHHHHHHcCCCEEEEEC
Confidence 4799999966 555543 345666766 4 7889987653
No 427
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=28.06 E-value=18 Score=25.49 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=17.7
Q ss_pred CCCeEEEEEC---CCCchHHHHHHHHh---CCCeEEEE
Q 032797 23 NKNPIIVIDN---YDSFTYNLCQYMGE---LGYHFEVY 54 (133)
Q Consensus 23 ~~~~i~vid~---~~~~~~~i~~~l~~---~G~~~~v~ 54 (133)
..|||++|.. .++++..+.+++.+ .|++++++
T Consensus 5 ~~mkIliI~gS~r~~s~t~~la~~~~~~~~~g~~v~~i 42 (199)
T 3s2y_A 5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPL 42 (199)
Confidence 3468887732 23555555554433 16777666
No 428
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=22.25 E-value=2.3e+02 Score=20.60 Aligned_cols=80 Identities=8% Similarity=-0.035 Sum_probs=43.4
Q ss_pred CCCCeEEEEECCCCchH----HHHHHHHhCCCeEEE---EeCCCCCH----HHHccCCCCEEEECCCCCCcCCchHHHHH
Q 032797 22 NNKNPIIVIDNYDSFTY----NLCQYMGELGYHFEV---YRNDELTV----EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v---~~~~~~~~----~~l~~~~~DgvIl~GG~~~~~d~~~~~~~ 90 (133)
....+|++|...+.+.. .+.+.+++.|.++.. ++....+. ..+...++|+|++.+.. .+....++.
T Consensus 149 ~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~---~~a~~~~~~ 225 (375)
T 4evq_A 149 AGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSG---GGALKFIKD 225 (375)
T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCT---HHHHHHHHH
T ss_pred cCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCc---chHHHHHHH
Confidence 35578988854333432 356678888987642 22221222 22333479999984421 111223444
Q ss_pred HHHhCCCCCEEEEe
Q 032797 91 VLELGPTVPLFGVC 104 (133)
Q Consensus 91 i~~~~~~~PvLGIC 104 (133)
+++..-.+|++|.-
T Consensus 226 ~~~~g~~vp~~~~~ 239 (375)
T 4evq_A 226 YAAANLGIPLWGPG 239 (375)
T ss_dssp HHHTTCCCCEEEEG
T ss_pred HHHcCCCceEEecC
Confidence 55555569999974
No 429
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=22.07 E-value=1.4e+02 Score=19.63 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=30.3
Q ss_pred CCeEEEEECC---CCchHHHHHHHHhCCCeEEEEeCCC-----------CCHHHHccCCCCEEEEC
Q 032797 24 KNPIIVIDNY---DSFTYNLCQYMGELGYHFEVYRNDE-----------LTVEELKRKNPRGVLIS 75 (133)
Q Consensus 24 ~~~i~vid~~---~~~~~~i~~~l~~~G~~~~v~~~~~-----------~~~~~l~~~~~DgvIl~ 75 (133)
+.+|+||... +.+...+.+.|.+.|+++..+.+.. .+..+++ ...|.++++
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~-~~~Dlvii~ 77 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVP-EKVDMVDVF 77 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCS-SCCSEEECC
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcC-CCCCEEEEE
Confidence 4568999543 3455667888888898754443321 1223333 367877775
No 430
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=22.02 E-value=1.4e+02 Score=22.71 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=50.8
Q ss_pred CeEEEEECCCCc---hHHHHHHHHhC-CCeEEEEeCCCCCHHHH---ccCCCCEEEECCCCCCcCCchH---------HH
Q 032797 25 NPIIVIDNYDSF---TYNLCQYMGEL-GYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSGI---------SL 88 (133)
Q Consensus 25 ~~i~vid~~~~~---~~~i~~~l~~~-G~~~~v~~~~~~~~~~l---~~~~~DgvIl~GG~~~~~d~~~---------~~ 88 (133)
..++.++...++ .....+++++. +..+.+... ..+.++. .....|+|+++++++...+... ..
T Consensus 121 ~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~-v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~ 199 (336)
T 1ypf_A 121 PEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGN-VGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 199 (336)
T ss_dssp CSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECC-cCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHH
Confidence 455556542222 23455666653 223333331 1233332 2348999999776554322100 23
Q ss_pred HHHHHh--CCCCCEE---EEechHHHH-HHHhCCeeee
Q 032797 89 QTVLEL--GPTVPLF---GVCMGLQCI-GEAFGDCAFS 120 (133)
Q Consensus 89 ~~i~~~--~~~~PvL---GIClG~QlL-a~a~GG~v~~ 120 (133)
+.+.++ ..++||+ ||..|-.++ +.++|++...
T Consensus 200 ~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalalGAdaV~ 237 (336)
T 1ypf_A 200 AALRWCAKAASKPIIADGGIRTNGDVAKSIRFGATMVM 237 (336)
T ss_dssp HHHHHHHHTCSSCEEEESCCCSTHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 344442 2379998 588898888 5588987654
No 431
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=21.98 E-value=43 Score=24.72 Aligned_cols=80 Identities=6% Similarity=-0.007 Sum_probs=43.1
Q ss_pred CCCeEEEEECCCCchHHHH----HHHHhCCCeEEEE-eCCCCCH----HHHccCCCCEEEECCCCCCcCCchHHHHHHHH
Q 032797 23 NKNPIIVIDNYDSFTYNLC----QYMGELGYHFEVY-RNDELTV----EELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~----~~l~~~G~~~~v~-~~~~~~~----~~l~~~~~DgvIl~GG~~~~~d~~~~~~~i~~ 93 (133)
...+++++...+.|...+. +.+++.|.++.-. .++..+. ......++|.+++.+.+ .+...+.+.++.
T Consensus 123 g~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~~~~~~~~~~~~~~~dai~~~~~~---~~~~~i~~q~~~ 199 (327)
T 3ckm_A 123 GVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAVASP---TELAEMKGYLTN 199 (327)
T ss_dssp TCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHSCTTCCEEEECCCH---HHHHHHHHHHTT
T ss_pred CCeeEEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCCCchhhHHHHHhccCCcEEEEEcCH---HHHHHHHHHHHh
Confidence 3457788865566765544 4455566654322 2221111 12234589999996642 122233444444
Q ss_pred hCCCCCEEEEec
Q 032797 94 LGPTVPLFGVCM 105 (133)
Q Consensus 94 ~~~~~PvLGICl 105 (133)
...+.|+++.-.
T Consensus 200 ~g~~~~~~~~~~ 211 (327)
T 3ckm_A 200 IVPNLAIYASSR 211 (327)
T ss_dssp TCTTCEEEECGG
T ss_pred hhccCCEEeeec
Confidence 556788888643
No 432
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=21.96 E-value=18 Score=29.85 Aligned_cols=13 Identities=8% Similarity=-0.018 Sum_probs=9.2
Q ss_pred CCeEEEEECCCCc
Q 032797 24 KNPIIVIDNYDSF 36 (133)
Q Consensus 24 ~~~i~vid~~~~~ 36 (133)
.++|+|+..+..-
T Consensus 97 ~~rIgIltsGGda 109 (487)
T 2hig_A 97 ETTIGIVTCGGIC 109 (487)
T ss_dssp GCEEEEEECSSCC
T ss_pred CcEEEEEecCCCc
Confidence 4689999776543
No 433
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=21.89 E-value=2e+02 Score=19.73 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=24.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-------HHHccCCCCEEEECCC
Q 032797 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (133)
Q Consensus 40 i~~~l~~~G~~~~v~~~~~~~~-------~~l~~~~~DgvIl~GG 77 (133)
+.+.+++.|+.+.+..... +. +.+...++||+|+.+.
T Consensus 24 i~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 24 MLPAFYEQGYDPIMMESQF-SPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp HHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHcCCEEEEEeCCC-cHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4556677899988876532 22 1223357999999774
No 434
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=21.72 E-value=1.3e+02 Score=18.53 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=17.4
Q ss_pred CeEEEEECCCCchHHHHHHHHhCCCeEEEEe
Q 032797 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (133)
Q Consensus 25 ~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~ 55 (133)
|+|+|+.. +.....+.+.|.+.|.++.++.
T Consensus 5 m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d 34 (140)
T 1lss_A 5 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLID 34 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEE
Confidence 56777743 2233456666766777666554
No 435
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=21.67 E-value=92 Score=23.93 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=24.3
Q ss_pred CCCCEEEECC-CCCCcC-CchHHHHHHHHh-CCCCCEEEE
Q 032797 67 KNPRGVLISP-GPGAPQ-DSGISLQTVLEL-GPTVPLFGV 103 (133)
Q Consensus 67 ~~~DgvIl~G-G~~~~~-d~~~~~~~i~~~-~~~~PvLGI 103 (133)
..++|||+-| |.|+.. +...+.+.++++ ++ +||.-.
T Consensus 222 ~g~~GiVle~~G~Gn~p~~~~~~~~~l~~a~~~-i~VV~~ 260 (328)
T 1wls_A 222 LGYKGIILEGYGVGGIPYRGTDLFEVVSSISKR-IPVVLT 260 (328)
T ss_dssp TTCSEEEEEESSSCCCCCSSSSHHHHHHHHTTT-SCEEEE
T ss_pred CCCCEEEEeeeCCCCCCCCcHHHHHHHHHHhcC-CeEEEe
Confidence 3689999865 556544 334566778775 66 888755
No 436
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.51 E-value=2.5e+02 Score=20.67 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=28.9
Q ss_pred CCCCeEEEEECC-------CCchHHHHHHHHh--CCCeEEEEeCCCCC---H----HHHccCCCCEEEECCC
Q 032797 22 NNKNPIIVIDNY-------DSFTYNLCQYMGE--LGYHFEVYRNDELT---V----EELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid~~-------~~~~~~i~~~l~~--~G~~~~v~~~~~~~---~----~~l~~~~~DgvIl~GG 77 (133)
....+|.++-.. +.|...+.+.+++ .|+.+.+....... . +.+....+||||+.+.
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 137 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSV 137 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSSSCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHhhCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecC
Confidence 344567766432 1222234444433 28888877653211 1 1233458999999764
No 437
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=21.36 E-value=77 Score=23.06 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 032797 38 YNLCQYMGELGYHFEVYRN 56 (133)
Q Consensus 38 ~~i~~~l~~~G~~~~v~~~ 56 (133)
..+.+.|.+.|.++.++..
T Consensus 37 ~~l~~~L~~~G~~v~v~~~ 55 (342)
T 2iuy_A 37 ANLMDGLLELGHEVFLLGA 55 (342)
T ss_dssp HHHHHHHHHTTCEEEEESC
T ss_pred HHHHHHHHHcCCeEEEEec
Confidence 3577888889999998854
No 438
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=21.32 E-value=1.8e+02 Score=19.15 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=27.4
Q ss_pred CCCEEEECCCCC-CcCCchHHHHHHHHhC----CCCCEEEEe--chH-------H---HHHHHhCCeeee
Q 032797 68 NPRGVLISPGPG-APQDSGISLQTVLELG----PTVPLFGVC--MGL-------Q---CIGEAFGDCAFS 120 (133)
Q Consensus 68 ~~DgvIl~GG~~-~~~d~~~~~~~i~~~~----~~~PvLGIC--lG~-------Q---lLa~a~GG~v~~ 120 (133)
.+|+||+ +.|- +-.-...+..++..+. .++|+.-++ .|. + -+...+|.++.+
T Consensus 63 ~aD~ii~-~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 63 KADAIVL-LSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGDGGINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp HCSSEEE-EEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTCSHHHHHHHHHHHHHTTCEEEE
T ss_pred HCCEEEE-EcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEECCCChhHHHHHHHHHHHHHHcCCEEec
Confidence 6899999 4443 1112233444454331 468887775 232 1 123457887664
No 439
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=21.26 E-value=1.5e+02 Score=21.03 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=25.9
Q ss_pred CCCeEEEEECCCCchH----HHHHHHHhCCCeEEEEeC
Q 032797 23 NKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRN 56 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~v~~~ 56 (133)
.+.+|++++.+|-..+ .+.+.+++.|++++++|-
T Consensus 74 ~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPG 111 (239)
T 1va0_A 74 AHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPG 111 (239)
T ss_dssp TSSEEEEEESBCTTSSSSHHHHHHHHHHTTCCEEEECC
T ss_pred CCCcEEEEeCCCCccccCHHHHHHHHHHCCCcEEEECC
Confidence 4568999988876533 466778888999999984
No 440
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=21.13 E-value=2.5e+02 Score=20.57 Aligned_cols=54 Identities=19% Similarity=0.093 Sum_probs=30.0
Q ss_pred CCCeEEEEECC--CCchH----HHHHHHHhCCCeEEEEeCCCCCHH-------HHccCCCCEEEECC
Q 032797 23 NKNPIIVIDNY--DSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (133)
Q Consensus 23 ~~~~i~vid~~--~~~~~----~i~~~l~~~G~~~~v~~~~~~~~~-------~l~~~~~DgvIl~G 76 (133)
...+|.++-.. +.|.. .+.+.+++.|+.+.+......+.+ .+...++||+|+.+
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 34567666332 22322 245566778999988765322211 22335899999964
No 441
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=20.93 E-value=35 Score=26.38 Aligned_cols=51 Identities=6% Similarity=-0.038 Sum_probs=27.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHcc-CCCCEEEE
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLI 74 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~-~G~~~~v~~~~~~~~~~l~~-~~~DgvIl 74 (133)
.++|+|+|-.......+.+.|+. .++.+..........+.+.. ..+|.+++
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~Dlvll 55 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAIC 55 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEE
Confidence 46899998644444556777777 45555433211001122222 36787776
No 442
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=20.93 E-value=2.5e+02 Score=20.56 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=27.1
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEechH---HHHHHHhCC
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL---QCIGEAFGD 116 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIClG~---QlLa~a~GG 116 (133)
.+|-||++=-+ ++.....+.++. +..+.+++-++-|+ +.|.+.++.
T Consensus 69 ~~D~vilavk~---~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~ 118 (312)
T 3hn2_A 69 PMDLVLVGLKT---FANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA 118 (312)
T ss_dssp CCSEEEECCCG---GGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG
T ss_pred CCCEEEEecCC---CCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC
Confidence 45666653211 122233455554 35678899888887 467888874
No 443
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=20.88 E-value=1.8e+02 Score=18.83 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=31.9
Q ss_pred CCeEE-EEECCCCchHH------HHHHHHhCCCeEEEEeC------CCCCHHHHccCCCCEEEECCC
Q 032797 24 KNPII-VIDNYDSFTYN------LCQYMGELGYHFEVYRN------DELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 24 ~~~i~-vid~~~~~~~~------i~~~l~~~G~~~~v~~~------~~~~~~~l~~~~~DgvIl~GG 77 (133)
.++|+ |..+..+-.+. +.++-++.|+++.+-.- +..+.+++. ..|+||+.+-
T Consensus 5 ~mkIvaVTaCptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d 69 (111)
T 2kyr_A 5 SKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIA--EATIIIHSVA 69 (111)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHH--HCSEEEEEES
T ss_pred cccEEEEEcCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHH--hCCEEEEEeC
Confidence 35665 45666665443 33344568998876311 235667776 6899999764
No 444
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=20.83 E-value=1.8e+02 Score=18.91 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=30.3
Q ss_pred CCCCeEEEEEC---CCCchHHHHHHHHhCCCeEEEEeCCC---------CCHHHHccCCCCEEEEC
Q 032797 22 NNKNPIIVIDN---YDSFTYNLCQYMGELGYHFEVYRNDE---------LTVEELKRKNPRGVLIS 75 (133)
Q Consensus 22 ~~~~~i~vid~---~~~~~~~i~~~l~~~G~~~~v~~~~~---------~~~~~l~~~~~DgvIl~ 75 (133)
..+.+|+||.. .+.+.+.+.+.|.+.|+++..+.... .+..++. ...|.++++
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~-~~vDlvii~ 76 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELP-KDVDVIVFV 76 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSC-TTCCEEEEC
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhC-CCCCEEEEE
Confidence 44568999943 23445567888988999744332211 1233333 357877773
No 445
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=20.72 E-value=68 Score=25.30 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=50.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC------------------CHHHHc---cCCCCEEEECCCCCCcC
Q 032797 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL------------------TVEELK---RKNPRGVLISPGPGAPQ 82 (133)
Q Consensus 24 ~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~------------------~~~~l~---~~~~DgvIl~GG~~~~~ 82 (133)
+++|+|+.+ +.+...+.+.|.+.|.++.++..+.. +.+.+. ..++|.+|++-+.
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~---- 78 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD---- 78 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSS----
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCC----
Confidence 457888875 35666788888888888888765411 111111 1356777764431
Q ss_pred CchH--HHHHHHHhCCCCCEEEEechHHHH--HHHhCCe
Q 032797 83 DSGI--SLQTVLELGPTVPLFGVCMGLQCI--GEAFGDC 117 (133)
Q Consensus 83 d~~~--~~~~i~~~~~~~PvLGIClG~QlL--a~a~GG~ 117 (133)
+... ....++++..+.+++.-.....-. -..+|..
T Consensus 79 ~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L~~~Gad 117 (413)
T 3l9w_A 79 PQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVE 117 (413)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCC
Confidence 1111 234455555567788877754333 2356664
No 446
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=20.70 E-value=2.8e+02 Score=21.06 Aligned_cols=56 Identities=7% Similarity=0.081 Sum_probs=38.3
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHH--HHccCCCCEEEECCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVE--ELKRKNPRGVLISPG 77 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~--~l~~~~~DgvIl~GG 77 (133)
...+.+++||......-..+...|...|+.+.+......+.+ +.. .++|.||..=|
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~-~~ADIVI~Avg 219 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYL-RTADIVIAAMG 219 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHH-HTCSEEEECSC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhh-ccCCEEEECCC
Confidence 356789999976444567788889899999888865323343 332 37898876544
No 447
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=20.69 E-value=2.1e+02 Score=20.60 Aligned_cols=31 Identities=6% Similarity=0.077 Sum_probs=20.8
Q ss_pred CCCeEEEEECCCCch-HHHHHHHHhCCCeEEEE
Q 032797 23 NKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVY 54 (133)
Q Consensus 23 ~~~~i~vid~~~~~~-~~i~~~l~~~G~~~~v~ 54 (133)
..|+|+|... .++. ..+.+.|.+.|.++..+
T Consensus 12 ~~M~ilVtGa-tG~iG~~l~~~L~~~g~~V~~~ 43 (342)
T 2x4g_A 12 AHVKYAVLGA-TGLLGHHAARAIRAAGHDLVLI 43 (342)
T ss_dssp CCCEEEEEST-TSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEE
Confidence 3457777754 3554 45788888888887765
No 448
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=20.67 E-value=2.3e+02 Score=22.26 Aligned_cols=83 Identities=7% Similarity=-0.077 Sum_probs=48.0
Q ss_pred cccCCCCCeEEEEECCCCchH--HHHHHHHhCCCeEEEEeCCCCCHHHH-ccCCCCEEEECCCCCCcCC-------chHH
Q 032797 18 KKSKNNKNPIIVIDNYDSFTY--NLCQYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQD-------SGIS 87 (133)
Q Consensus 18 ~~~~~~~~~i~vid~~~~~~~--~i~~~l~~~G~~~~v~~~~~~~~~~l-~~~~~DgvIl~GG~~~~~d-------~~~~ 87 (133)
+..++...+|.+.+.+..+.. .....|.+.|++++++... ....+ .....|.||+ |- ..... .+..
T Consensus 205 A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Ds--a~~~~M~~~~Vd~ViV-GA-D~V~aNG~v~NKiGTy 280 (383)
T 2a0u_A 205 LFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDG--AASSLMLNRKIDAVVV-GA-DRICQNGDTANKIGTY 280 (383)
T ss_dssp HHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGG--GHHHHHHHSCCCEEEE-CC-SEECTTCCEEEETTHH
T ss_pred HHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehh--HHHHHhhcCCCCEEEE-Cc-cEEecCCCEeecccHH
Confidence 344455667777776655543 3567788899999887632 22332 3235898888 43 22221 2222
Q ss_pred -HHHHHHhCCCCCEEEEec
Q 032797 88 -LQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 88 -~~~i~~~~~~~PvLGICl 105 (133)
+..+.+ ..++|++-.|=
T Consensus 281 ~lAl~Ak-~~~vPfyV~ap 298 (383)
T 2a0u_A 281 NLAVSAK-FHGVKLYVAAP 298 (383)
T ss_dssp HHHHHHH-HTTCCEEEECC
T ss_pred HHHHHHH-HcCCCEEEeCC
Confidence 233322 35799998873
No 449
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=20.55 E-value=2.5e+02 Score=20.39 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=43.0
Q ss_pred CCCCeEEEEECCCCchH----HHHHHHHhCCCeEE---EEeCCCCCH----HHHccCCCCEEEECCCCCCcCCchHHHHH
Q 032797 22 NNKNPIIVIDNYDSFTY----NLCQYMGELGYHFE---VYRNDELTV----EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~----~i~~~l~~~G~~~~---v~~~~~~~~----~~l~~~~~DgvIl~GG~~~~~d~~~~~~~ 90 (133)
....||++|...+.+.. .+.+.+++.|.++. .++....+. ..+...++|+|++.+.. .+.....+.
T Consensus 157 ~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~---~~a~~~~~~ 233 (386)
T 3sg0_A 157 TGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAG---TPAVLPQKA 233 (386)
T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCS---GGGHHHHHH
T ss_pred cCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCc---chHHHHHHH
Confidence 34578988854344433 35567777888763 233221221 22334579999885531 222334445
Q ss_pred HHHhCCCCCEEEEe
Q 032797 91 VLELGPTVPLFGVC 104 (133)
Q Consensus 91 i~~~~~~~PvLGIC 104 (133)
+++..-..|+++.-
T Consensus 234 ~~~~g~~~~~~~~~ 247 (386)
T 3sg0_A 234 LRERGFKGAIYQTH 247 (386)
T ss_dssp HHHTTCCSEEECCG
T ss_pred HHHcCCCCcEEecc
Confidence 55544446777653
No 450
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=20.54 E-value=1.3e+02 Score=22.68 Aligned_cols=33 Identities=6% Similarity=0.088 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 032797 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (133)
Q Consensus 23 ~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~ 56 (133)
+.++|+|+..+ .....+.+.+++.|+++..+..
T Consensus 10 ~~~~ili~g~g-~~~~~~~~a~~~~G~~v~~~~~ 42 (391)
T 1kjq_A 10 AATRVMLLGSG-ELGKEVAIECQRLGVEVIAVDR 42 (391)
T ss_dssp TCCEEEEESCS-HHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHcCCEEEEEEC
Confidence 45789999653 3345678889999998877754
No 451
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=20.42 E-value=72 Score=24.69 Aligned_cols=8 Identities=38% Similarity=0.571 Sum_probs=4.5
Q ss_pred HHhCCeee
Q 032797 112 EAFGDCAF 119 (133)
Q Consensus 112 ~a~GG~v~ 119 (133)
.++|.+|.
T Consensus 180 ~~~G~~V~ 187 (352)
T 3gg9_A 180 RAFGMNVL 187 (352)
T ss_dssp HHTTCEEE
T ss_pred HhCCCEEE
Confidence 45666654
No 452
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=20.34 E-value=2.6e+02 Score=21.67 Aligned_cols=83 Identities=11% Similarity=0.114 Sum_probs=49.9
Q ss_pred cccCCCCCeEEEEECCCCchH--HHHHHHHhCCCeEEEEeCCCCCHHHH-ccCCCCEEEECCCCCCcC------CchHH-
Q 032797 18 KKSKNNKNPIIVIDNYDSFTY--NLCQYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQ------DSGIS- 87 (133)
Q Consensus 18 ~~~~~~~~~i~vid~~~~~~~--~i~~~l~~~G~~~~v~~~~~~~~~~l-~~~~~DgvIl~GG~~~~~------d~~~~- 87 (133)
+..++...+|.+.+....+.. .....|.+.|++++++... ....+ .....|.||+ |- .... ..+..
T Consensus 174 A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Ds--a~~~~M~~~~Vd~Viv-GA-d~V~aNGv~NKiGT~~ 249 (351)
T 1t5o_A 174 AVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDS--MVGIVMQKGMVDKVIV-GA-DRIVRDAVFNKIGTYT 249 (351)
T ss_dssp HHHTTCCCEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGG--GHHHHHHTTCCSEEEE-CC-SEEETTEEEEETTHHH
T ss_pred HHHCCCEEEEEEeCCCcccccHHHHHHHHHhCCCCEEEEehh--HHHHHhhcCCCCEEEE-Cc-cchhhcCcccccCHHH
Confidence 455567788888887665543 3567899999999988632 23333 3235898888 43 1111 22322
Q ss_pred HHHHHHhCCCCCEEEEec
Q 032797 88 LQTVLELGPTVPLFGVCM 105 (133)
Q Consensus 88 ~~~i~~~~~~~PvLGICl 105 (133)
+..+.+ ..++|++-.|-
T Consensus 250 lAl~Ak-~~~vPfyV~a~ 266 (351)
T 1t5o_A 250 VSVVAK-HHNIPFYVAAP 266 (351)
T ss_dssp HHHHHH-HTTCCEEEECC
T ss_pred HHHHHH-HcCCCEEEeCc
Confidence 222322 45799999883
No 453
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=20.30 E-value=52 Score=24.70 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=19.8
Q ss_pred CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEec
Q 032797 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (133)
Q Consensus 68 ~~DgvIl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGICl 105 (133)
.+|.+|+.. |..+ ...+++. .-++|+.|||-
T Consensus 158 ~Pdll~V~D----p~~e---~~Ai~EA~~l~IPvIaivD 189 (256)
T 2vqe_B 158 LPDAIFVVD----PTKE---AIAVREARKLFIPVIALAD 189 (256)
T ss_dssp CCSEEEESC----TTTT---HHHHHHHHHTTCCCEECCC
T ss_pred CCCEEEEeC----Cccc---hHHHHHHHHcCCCEEEEec
Confidence 588888843 3222 2345553 56799999984
No 454
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=20.26 E-value=2.6e+02 Score=20.53 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCchH-----HHHHHHHhCCCeEEEEeC
Q 032797 22 NNKNPIIVIDNYDSFTY-----NLCQYMGELGYHFEVYRN 56 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~-----~i~~~l~~~G~~~~v~~~ 56 (133)
.+.|||+++-.. +..+ .+.+.|++.|.++.++..
T Consensus 20 ~~~MRIL~~~~p-~~GHv~P~l~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 20 FQSMRALFITSP-GLSHILPTVPLAQALRALGHEVRYATG 58 (400)
T ss_dssp -CCCEEEEECCS-SHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCeEEEECCC-chhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 456899988543 3333 378899999999998764
No 455
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=20.14 E-value=1.6e+02 Score=22.93 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=26.7
Q ss_pred CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCC
Q 032797 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~ 57 (133)
..++.+|+|+..+ +....+.+++++.|+++.++..+
T Consensus 32 ~~~~~~IlIlG~G-~lg~~~~~aa~~lG~~v~v~d~~ 67 (419)
T 4e4t_A 32 ILPGAWLGMVGGG-QLGRMFCFAAQSMGYRVAVLDPD 67 (419)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEECCC
Confidence 4556788888653 44567888999999999887543
No 456
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=20.13 E-value=2.9e+02 Score=21.00 Aligned_cols=55 Identities=5% Similarity=0.012 Sum_probs=38.2
Q ss_pred CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHccCCCCEEEECCC
Q 032797 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (133)
Q Consensus 22 ~~~~~i~vid~~~~~~~~i~~~l~~~G~~~~v~~~~~~~~~~l~~~~~DgvIl~GG 77 (133)
..+.+++||..+...-..+...|...|+.+++......+..+.. ..+|.||..=|
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~-~~ADIVI~Avg 217 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV-NKGDILVVATG 217 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH-TTCSEEEECCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHh-ccCCEEEECCC
Confidence 56779999987544556788888889999988865433444433 37897776444
No 457
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=20.11 E-value=2.3e+02 Score=20.98 Aligned_cols=54 Identities=13% Similarity=0.045 Sum_probs=28.1
Q ss_pred CCCCCeEEEEECCCCchH-HHHHHHHhC-CCeEEEE-eCCC----------------CCHHHHc-cCCCCEEEEC
Q 032797 21 KNNKNPIIVIDNYDSFTY-NLCQYMGEL-GYHFEVY-RNDE----------------LTVEELK-RKNPRGVLIS 75 (133)
Q Consensus 21 ~~~~~~i~vid~~~~~~~-~i~~~l~~~-G~~~~v~-~~~~----------------~~~~~l~-~~~~DgvIl~ 75 (133)
..+.+||.||..+. ... .....++.. ++++.-+ ..+. .+.+++. ..++|+|+|+
T Consensus 20 ~~~mirigiIG~G~-ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~ 93 (350)
T 4had_A 20 FQSMLRFGIISTAK-IGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIP 93 (350)
T ss_dssp --CCEEEEEESCCH-HHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEEC
T ss_pred ccCccEEEEEcChH-HHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEe
Confidence 34557999998742 222 245566654 5555422 1110 1344443 3479999994
Done!