Query 032798
Match_columns 133
No_of_seqs 214 out of 1032
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:33:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 1.2E-26 4.3E-31 155.6 12.9 87 31-118 9-95 (102)
2 2eqz_A High mobility group pro 99.9 2.9E-26 1E-30 149.3 12.0 79 30-109 6-86 (86)
3 2lhj_A High mobility group pro 99.9 7.8E-27 2.7E-31 155.2 5.9 81 31-112 14-96 (97)
4 1k99_A Upstream binding factor 99.9 3E-26 1E-30 153.1 7.3 83 31-114 2-84 (99)
5 1cg7_A Protein (NON histone pr 99.9 2.2E-26 7.6E-31 152.0 5.1 82 30-112 11-92 (93)
6 1hme_A High mobility group pro 99.9 6.2E-26 2.1E-30 144.7 6.8 76 34-110 1-76 (77)
7 2crj_A SWI/SNF-related matrix- 99.9 4.4E-25 1.5E-29 145.5 10.6 79 34-113 2-80 (92)
8 2e6o_A HMG box-containing prot 99.9 1.4E-25 4.6E-30 146.5 7.6 77 32-109 10-86 (87)
9 1wgf_A Upstream binding factor 99.9 6E-26 2.1E-30 149.1 5.7 79 27-106 8-86 (90)
10 2cs1_A PMS1 protein homolog 1; 99.9 3.7E-25 1.3E-29 145.8 8.5 80 34-114 2-81 (92)
11 3nm9_A HMG-D, high mobility gr 99.9 2.4E-24 8.3E-29 136.1 9.4 72 37-111 1-72 (73)
12 1hry_A Human SRY; DNA, DNA-bin 99.9 8.5E-25 2.9E-29 139.0 6.8 73 36-109 1-73 (76)
13 1v64_A Nucleolar transcription 99.9 4.5E-24 1.5E-28 144.7 10.2 91 31-126 8-99 (108)
14 1aab_A High mobility group pro 99.9 4.9E-25 1.7E-29 142.5 5.1 77 34-111 2-80 (83)
15 1wxl_A Single-strand recogniti 99.9 4E-24 1.4E-28 135.2 6.9 71 37-110 1-71 (73)
16 1j46_A SRY, sex-determining re 99.9 9E-24 3.1E-28 137.2 8.6 75 36-111 1-75 (85)
17 2gzk_A Sex-determining region 99.9 1.8E-23 6.2E-28 149.7 11.0 80 30-110 79-158 (159)
18 1ckt_A High mobility group 1 p 99.9 8.3E-24 2.8E-28 132.7 7.5 69 39-108 1-71 (71)
19 4a3n_A Transcription factor SO 99.9 4.6E-24 1.6E-28 133.7 5.9 71 38-109 1-71 (71)
20 1wz6_A HMG-box transcription f 99.9 3.6E-24 1.2E-28 138.1 5.1 76 35-111 3-78 (82)
21 4euw_A Transcription factor SO 99.9 1.4E-23 4.8E-28 141.7 7.8 80 31-111 21-100 (106)
22 1gt0_D Transcription factor SO 99.9 2.3E-23 7.9E-28 133.6 7.9 73 38-111 1-73 (80)
23 3f27_D Transcription factor SO 99.9 1.7E-23 6E-28 135.0 7.2 74 36-110 3-76 (83)
24 2lef_A LEF-1 HMG, protein (lym 99.9 3.6E-23 1.2E-27 134.5 8.4 73 38-111 1-73 (86)
25 3u2b_C Transcription factor SO 99.9 3.1E-23 1.1E-27 132.6 6.8 72 38-110 1-72 (79)
26 2yrq_A High mobility group pro 99.9 1.3E-22 4.4E-27 147.2 10.4 80 31-111 93-172 (173)
27 1i11_A Transcription factor SO 99.9 3E-23 1E-27 133.5 6.1 74 37-111 2-75 (81)
28 1l8y_A Upstream binding factor 99.9 1.2E-22 4E-27 133.5 8.2 75 38-114 3-77 (91)
29 3fgh_A Transcription factor A, 99.9 5.7E-23 2E-27 127.7 6.4 66 38-108 1-66 (67)
30 2yrq_A High mobility group pro 99.9 3.3E-22 1.1E-26 145.0 10.4 83 30-112 6-89 (173)
31 1v63_A Nucleolar transcription 99.9 3.2E-22 1.1E-26 134.0 9.4 83 35-120 4-86 (101)
32 2d7l_A WD repeat and HMG-box D 99.8 1.2E-21 4.2E-26 126.4 6.7 61 36-97 2-63 (81)
33 3tmm_A Transcription factor A, 99.8 1.7E-21 5.9E-26 148.0 8.2 82 32-114 34-115 (238)
34 3tq6_A Transcription factor A, 99.8 4.6E-22 1.6E-26 149.1 3.7 90 31-125 106-195 (214)
35 3tmm_A Transcription factor A, 99.8 7E-22 2.4E-26 150.2 3.2 89 31-124 138-226 (238)
36 3tq6_A Transcription factor A, 99.8 8.6E-21 2.9E-25 142.1 9.0 79 35-114 5-83 (214)
37 2yuk_A Myeloid/lymphoid or mix 99.8 3.8E-22 1.3E-26 131.0 0.0 69 31-104 14-84 (90)
38 2cto_A Novel protein; high mob 99.8 5.7E-21 2E-25 126.2 4.5 69 34-105 5-76 (93)
39 2gzk_A Sex-determining region 99.8 1.4E-18 4.8E-23 124.1 7.2 73 37-110 2-74 (159)
40 2qgu_A Probable signal peptide 72.2 4.4 0.00015 29.3 4.1 46 66-111 72-119 (211)
41 1j1d_B Troponin T, TNT; THIN f 35.8 88 0.003 20.2 5.8 61 50-115 29-89 (106)
42 3lay_A Zinc resistance-associa 33.2 76 0.0026 22.3 4.9 26 77-102 63-88 (175)
43 3o39_A Periplasmic protein rel 28.2 75 0.0026 20.4 3.9 25 72-96 81-105 (108)
44 3u65_B TP33 protein; tetratric 25.6 1.3E+02 0.0045 22.6 5.5 22 77-98 235-256 (328)
45 3mfq_A TROA, high-affinity zin 25.1 2.1E+02 0.007 21.1 7.4 57 68-124 112-171 (282)
46 3itf_A Periplasmic adaptor pro 24.1 1.1E+02 0.0037 20.7 4.2 28 72-99 109-136 (145)
47 2yua_A Williams-beuren syndrom 23.2 1.4E+02 0.0046 18.3 4.7 36 52-87 36-75 (99)
48 1j1d_C Troponin I, TNI; THIN f 23.0 1.6E+02 0.0055 19.7 4.9 51 66-118 58-108 (133)
49 2o37_A Protein SIS1; HSP40, J- 22.0 1.2E+02 0.0041 18.3 3.8 36 52-87 27-63 (92)
50 2xwv_A Sialic acid-binding per 21.6 1.7E+02 0.006 21.6 5.4 22 76-97 220-241 (312)
51 3fx7_A Putative uncharacterize 21.6 1.6E+02 0.0055 18.6 5.3 38 69-106 26-66 (94)
52 3hh8_A Metal ABC transporter s 20.1 1.8E+02 0.0061 21.6 5.1 49 68-116 132-180 (294)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=1.2e-26 Score=155.65 Aligned_cols=87 Identities=29% Similarity=0.538 Sum_probs=81.7
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032798 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (133)
Q Consensus 31 ~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 110 (133)
+++.+||++|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|+.++++|..+|++|+.
T Consensus 9 kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 9 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp CSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcc
Q 032798 111 QLVIFFGI 118 (133)
Q Consensus 111 k~~~~~~~ 118 (133)
.+......
T Consensus 88 ~~~~~~~~ 95 (102)
T 2co9_A 88 SLVSKSYT 95 (102)
T ss_dssp HHTSSCCC
T ss_pred hccccccc
Confidence 88765443
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=2.9e-26 Score=149.32 Aligned_cols=79 Identities=37% Similarity=0.618 Sum_probs=74.6
Q ss_pred CcccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032798 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107 (133)
Q Consensus 30 k~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 107 (133)
+++..+||++||||+|||++|++++|..++.+||+ ++ +.+|+++||++|++|++++|.+|+++|+.++++|..+|.+
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPE-VPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTT-SCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667999999999999999999999999999999 64 7999999999999999999999999999999999999999
Q ss_pred HH
Q 032798 108 YN 109 (133)
Q Consensus 108 y~ 109 (133)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 83
No 3
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.93 E-value=7.8e-27 Score=155.25 Aligned_cols=81 Identities=32% Similarity=0.664 Sum_probs=77.4
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032798 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108 (133)
Q Consensus 31 ~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 108 (133)
++..+||++|+||+||||||++++|..|+.+||+ ++ +.+|+++||++|++|++++|++|+++|+.++++|..+|++|
T Consensus 14 ~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y 92 (97)
T 2lhj_A 14 RKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPE-IAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEY 92 (97)
T ss_dssp TCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTT-STTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999999 88 99999999999999999999999999999999999999999
Q ss_pred HHhh
Q 032798 109 NKQL 112 (133)
Q Consensus 109 ~~k~ 112 (133)
+.+.
T Consensus 93 ~~~~ 96 (97)
T 2lhj_A 93 AQRK 96 (97)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8763
No 4
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.93 E-value=3e-26 Score=153.09 Aligned_cols=83 Identities=24% Similarity=0.518 Sum_probs=78.7
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032798 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (133)
Q Consensus 31 ~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 110 (133)
+++.+||++||||+|||||||++.|..|+.+||+ +++.+|+++||++|++||+++|++|.++|+.++++|..+|.+|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999 999999999999999999999999999999999999999999988
Q ss_pred hhhh
Q 032798 111 QLVI 114 (133)
Q Consensus 111 k~~~ 114 (133)
+..+
T Consensus 81 ~~P~ 84 (99)
T 1k99_A 81 DHPD 84 (99)
T ss_dssp CCCC
T ss_pred HCCC
Confidence 7553
No 5
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.93 E-value=2.2e-26 Score=152.01 Aligned_cols=82 Identities=37% Similarity=0.686 Sum_probs=78.0
Q ss_pred CcccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032798 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109 (133)
Q Consensus 30 k~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 109 (133)
+++..+||+.|+||+|||+||++++|..++.+||+ +++.+|+++||++|++||+++|.+|.++|+.++++|..+|++|.
T Consensus 11 ~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 11 TTRKKKDPNAPKRALSAYMFFANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred Hhh
Q 032798 110 KQL 112 (133)
Q Consensus 110 ~k~ 112 (133)
.+.
T Consensus 90 ~~~ 92 (93)
T 1cg7_A 90 ATL 92 (93)
T ss_dssp HHT
T ss_pred Hcc
Confidence 763
No 6
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.92 E-value=6.2e-26 Score=144.66 Aligned_cols=76 Identities=45% Similarity=0.861 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032798 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (133)
Q Consensus 34 ~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 110 (133)
++||++|+||+|||++|++++|..++.+||+ +++.+|+++||++|+.||+++|.+|.++|+.++++|..+|++|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999 999999999999999999999999999999999999999999864
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.92 E-value=4.4e-25 Score=145.45 Aligned_cols=79 Identities=27% Similarity=0.563 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032798 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLV 113 (133)
Q Consensus 34 ~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k~~ 113 (133)
.+||++||||+||||+|++++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|+.++++|..+|++|+....
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~ 80 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEA 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 4799999999999999999999999999999 999999999999999999999999999999999999999999987643
No 8
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=146.51 Aligned_cols=77 Identities=26% Similarity=0.505 Sum_probs=73.8
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032798 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109 (133)
Q Consensus 32 k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 109 (133)
+..+||++|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|++++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 456899999999999999999999999999999 99999999999999999999999999999999999999998874
No 9
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.92 E-value=6e-26 Score=149.11 Aligned_cols=79 Identities=29% Similarity=0.516 Sum_probs=73.4
Q ss_pred CCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 032798 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQ 106 (133)
Q Consensus 27 k~~k~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 106 (133)
+++++++.+||++|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|+.++++|..+|.
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777999999999999999999999999999999 99999999999999999999999999999999999987664
No 10
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=3.7e-25 Score=145.80 Aligned_cols=80 Identities=30% Similarity=0.427 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032798 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLV 113 (133)
Q Consensus 34 ~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k~~ 113 (133)
..+|++||||+||||+|++++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|++++++|..+|++|..++.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3689999999999999999999999999999 999999999999999999999999999999999999999999998765
Q ss_pred h
Q 032798 114 I 114 (133)
Q Consensus 114 ~ 114 (133)
.
T Consensus 81 ~ 81 (92)
T 2cs1_A 81 Q 81 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.91 E-value=2.4e-24 Score=136.15 Aligned_cols=72 Identities=32% Similarity=0.690 Sum_probs=69.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032798 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (133)
Q Consensus 37 p~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 111 (133)
+++||||+||||+||+++|..|+.+||+ +++.+|+++||++|++|++ |++|+++|++++++|..+|++|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999 9999999999999999998 9999999999999999999999874
No 12
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.91 E-value=8.5e-25 Score=139.02 Aligned_cols=73 Identities=27% Similarity=0.519 Sum_probs=69.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032798 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109 (133)
Q Consensus 36 dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 109 (133)
||++||||+||||+|++++|..++.+||+ +++.+|+++||++|++||+++|++|.++|+.++++|..++++|+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 73 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 68999999999999999999999999999 99999999999999999999999999999999999999999885
No 13
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=4.5e-24 Score=144.65 Aligned_cols=91 Identities=19% Similarity=0.343 Sum_probs=82.9
Q ss_pred cccCCCCCCC-CCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032798 31 PKAAKDPNKP-KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109 (133)
Q Consensus 31 ~k~~~dp~~P-KrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 109 (133)
.++.+||++| |||+|||++||+++|..++ + +++.||+++||++|+.|++++|++|+++|+.++++|..+|.+|.
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~-~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----D-VPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----T-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556899999 9999999999999999886 5 89999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccccCCCC
Q 032798 110 KQLVIFFGIIVVYNDNS 126 (133)
Q Consensus 110 ~k~~~~~~~~~~~~~~~ 126 (133)
..+.+..+..++.+...
T Consensus 83 ~~~~~~~r~~~~~~~~~ 99 (108)
T 1v64_A 83 ESLPEEEQQRVLGEEKM 99 (108)
T ss_dssp HHSCHHHHHHHHTTTTT
T ss_pred hhCCHHHHHHHHhcCCC
Confidence 99988888877666543
No 14
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.91 E-value=4.9e-25 Score=142.48 Aligned_cols=77 Identities=32% Similarity=0.621 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032798 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (133)
Q Consensus 34 ~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 111 (133)
++||++||||+||||+|++++|..++.+||+ ++ +.+|+++||++|++|++++|.+|.++|+.++++|..+|++|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTT-TCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999999999 64 69999999999999999999999999999999999999999653
No 15
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.90 E-value=4e-24 Score=135.17 Aligned_cols=71 Identities=30% Similarity=0.665 Sum_probs=68.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032798 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (133)
Q Consensus 37 p~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 110 (133)
|++||||+|||++|++++|..++.+||+ +++.+|+++||++|++| ++|.+|+++|+.++++|..+|++|+.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~ 71 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKP 71 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTT
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999999999999999999999 99999999999999999 89999999999999999999999965
No 16
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.90 E-value=9e-24 Score=137.22 Aligned_cols=75 Identities=27% Similarity=0.503 Sum_probs=72.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032798 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (133)
Q Consensus 36 dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 111 (133)
.|++|+||+||||+|++++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|+.++++|..++++|...
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 75 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 47899999999999999999999999999 9999999999999999999999999999999999999999999654
No 17
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.90 E-value=1.8e-23 Score=149.67 Aligned_cols=80 Identities=44% Similarity=0.827 Sum_probs=76.5
Q ss_pred CcccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032798 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109 (133)
Q Consensus 30 k~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 109 (133)
+++..+||+.|+||+|||++||+++|..++.+||+ +++++|+++||++|++|++++|++|.++|+.++++|..+|++|+
T Consensus 79 ~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 157 (159)
T 2gzk_A 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 157 (159)
T ss_dssp CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999 99999999999999999999999999999999999999999997
Q ss_pred H
Q 032798 110 K 110 (133)
Q Consensus 110 ~ 110 (133)
.
T Consensus 158 ~ 158 (159)
T 2gzk_A 158 A 158 (159)
T ss_dssp C
T ss_pred c
Confidence 5
No 18
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.90 E-value=8.3e-24 Score=132.73 Aligned_cols=69 Identities=33% Similarity=0.664 Sum_probs=66.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032798 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108 (133)
Q Consensus 39 ~PKrP~say~lF~~~~r~~~k~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 108 (133)
+||||+|||++|++++|..++.+||+ ++ +.+|+++||++|++|++++|.+|.++|+.++++|..+|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTT-CCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999 64 69999999999999999999999999999999999999876
No 19
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.90 E-value=4.6e-24 Score=133.74 Aligned_cols=71 Identities=31% Similarity=0.597 Sum_probs=63.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032798 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109 (133)
Q Consensus 38 ~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 109 (133)
++||||+||||+|++++|..++.+||+ +++.+|+++||++|+.||+++|.+|.++|+.++++|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 579999999999999999999999999 99999999999999999999999999999999999999999885
No 20
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.89 E-value=3.6e-24 Score=138.08 Aligned_cols=76 Identities=21% Similarity=0.424 Sum_probs=72.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032798 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (133)
Q Consensus 35 ~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 111 (133)
.|+++|+||+||||||++++|..++.+||+ +++.+|+++||++|++||+++|++|.++|+.++++|..++++|+..
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 588999999999999999999999999999 9999999999999999999999999999999999999999988643
No 21
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=141.69 Aligned_cols=80 Identities=33% Similarity=0.573 Sum_probs=70.5
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032798 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (133)
Q Consensus 31 ~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 110 (133)
....++++.|+||+||||||++++|..++.+||+ +++.+|+++||++|+.|++++|++|+++|++++++|..++++|+.
T Consensus 21 ~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky 99 (106)
T 4euw_A 21 FQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKY 99 (106)
T ss_dssp -------CCCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred hhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 3456889999999999999999999999999999 999999999999999999999999999999999999999999965
Q ss_pred h
Q 032798 111 Q 111 (133)
Q Consensus 111 k 111 (133)
.
T Consensus 100 ~ 100 (106)
T 4euw_A 100 Q 100 (106)
T ss_dssp -
T ss_pred C
Confidence 3
No 22
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.89 E-value=2.3e-23 Score=133.63 Aligned_cols=73 Identities=30% Similarity=0.584 Sum_probs=70.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032798 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (133)
Q Consensus 38 ~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 111 (133)
++|+||+||||+|++++|..++.+||+ +++.+|+++||++|+.||+++|.+|.++|+.++++|..++++|+..
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYR 73 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 579999999999999999999999999 9999999999999999999999999999999999999999999643
No 23
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.89 E-value=1.7e-23 Score=134.99 Aligned_cols=74 Identities=30% Similarity=0.557 Sum_probs=68.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032798 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (133)
Q Consensus 36 dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 110 (133)
.+++|+||+||||||++++|..++.+||+ +++.+|+++||++|+.|++++|.+|.++|+.++++|..++++|+.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 76 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKY 76 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 46789999999999999999999999999 999999999999999999999999999999999999999999864
No 24
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=3.6e-23 Score=134.54 Aligned_cols=73 Identities=23% Similarity=0.441 Sum_probs=70.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032798 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (133)
Q Consensus 38 ~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 111 (133)
+.|+||+||||||++++|..++.+||+ +++.+|+++||++|++||+++|++|.++|+.++++|..++++|...
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSAR 73 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 479999999999999999999999999 9999999999999999999999999999999999999999999754
No 25
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=3.1e-23 Score=132.58 Aligned_cols=72 Identities=29% Similarity=0.564 Sum_probs=69.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032798 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (133)
Q Consensus 38 ~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 110 (133)
|+||||+||||||++++|..++.+||+ +++.+|+++||++|++|++++|++|.++|+.++++|..++++|+.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky 72 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPD-MHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKY 72 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 579999999999999999999999999 999999999999999999999999999999999999999999864
No 26
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=147.19 Aligned_cols=80 Identities=44% Similarity=0.833 Sum_probs=76.2
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032798 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (133)
Q Consensus 31 ~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 110 (133)
++..+||++|+||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|+.++++|..+|++|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456799999999999999999999999999999 999999999999999999999999999999999999999999986
Q ss_pred h
Q 032798 111 Q 111 (133)
Q Consensus 111 k 111 (133)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 4
No 27
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=3e-23 Score=133.48 Aligned_cols=74 Identities=27% Similarity=0.525 Sum_probs=68.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032798 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (133)
Q Consensus 37 p~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 111 (133)
++.|+||+||||||++++|..++.+||+ +++.+|+++||++|++|++++|++|.++|++++++|..++++|+..
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 4789999999999999999999999999 9999999999999999999999999999999999999999999754
No 28
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.88 E-value=1.2e-22 Score=133.52 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=72.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032798 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLVI 114 (133)
Q Consensus 38 ~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k~~~ 114 (133)
+.|+||+|||+||+++.|..++.++|+ ++.+|++.||++|+.|++++|++|+++|+.++++|+.+|.+|+.+...
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 689999999999999999999999998 799999999999999999999999999999999999999999887665
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.88 E-value=5.7e-23 Score=127.74 Aligned_cols=66 Identities=32% Similarity=0.609 Sum_probs=62.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032798 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108 (133)
Q Consensus 38 ~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 108 (133)
|+||||+|||++|++++|..++.+|| ++|+++||++|++||+++|.+|.++|++++++|+.+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999987665 5999999999999999999999999999999999999988
No 30
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=145.02 Aligned_cols=83 Identities=29% Similarity=0.554 Sum_probs=77.3
Q ss_pred CcccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032798 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN-KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108 (133)
Q Consensus 30 k~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~-~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 108 (133)
++...+||++|+||+|||+||++++|..|+.+||+. +++.+|+++||++|+.|++++|++|.++|+.++++|..+|.+|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346678999999999999999999999999999994 4899999999999999999999999999999999999999999
Q ss_pred HHhh
Q 032798 109 NKQL 112 (133)
Q Consensus 109 ~~k~ 112 (133)
....
T Consensus 86 ~~~~ 89 (173)
T 2yrq_A 86 IPPK 89 (173)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 7643
No 31
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=3.2e-22 Score=134.00 Aligned_cols=83 Identities=16% Similarity=0.248 Sum_probs=72.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032798 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLVI 114 (133)
Q Consensus 35 ~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k~~~ 114 (133)
...++||||+|||++||++++. ..++++ +++.||+++||++|+.|++++|++|+++|+.++++|..+|++|...+..
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~-~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNH-LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 4567999999999999999964 224455 7899999999999999999999999999999999999999999999877
Q ss_pred hhcccc
Q 032798 115 FFGIIV 120 (133)
Q Consensus 115 ~~~~~~ 120 (133)
.+...+
T Consensus 81 ~~~~~~ 86 (101)
T 1v63_A 81 QDRAAY 86 (101)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 665544
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=126.36 Aligned_cols=61 Identities=21% Similarity=0.393 Sum_probs=59.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCChhhhHHHHHHHHHH
Q 032798 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97 (133)
Q Consensus 36 dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~-~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~ 97 (133)
+++.||||+|||||||+++|..|+.+||+ ++ +.||+++||++|+.|++++|++|+++|+.+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~-~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPD-FSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTT-CCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999 87 999999999999999999999999999887
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=148.01 Aligned_cols=82 Identities=17% Similarity=0.397 Sum_probs=76.9
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032798 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (133)
Q Consensus 32 k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 111 (133)
....||++||||+|||++||+++|..|+.+||+ +++.||+++||++|+.|++++|.+|+++|..++++|+.+|..|...
T Consensus 34 ~s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~ 112 (238)
T 3tmm_A 34 SSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ 112 (238)
T ss_dssp -CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346799999999999999999999999999999 9999999999999999999999999999999999999999999876
Q ss_pred hhh
Q 032798 112 LVI 114 (133)
Q Consensus 112 ~~~ 114 (133)
+..
T Consensus 113 ~~p 115 (238)
T 3tmm_A 113 LTP 115 (238)
T ss_dssp CCH
T ss_pred CCH
Confidence 543
No 34
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.84 E-value=4.6e-22 Score=149.07 Aligned_cols=90 Identities=26% Similarity=0.412 Sum_probs=81.5
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032798 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (133)
Q Consensus 31 ~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 110 (133)
++..+||+.|+||+|||++||++.|..++.++| .+|+++||++|++|++++|++|+++|++++++|..+|++|+.
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999998876554 499999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCC
Q 032798 111 QLVIFFGIIVVYNDN 125 (133)
Q Consensus 111 k~~~~~~~~~~~~~~ 125 (133)
++.+.+..++|....
T Consensus 181 ~~~~~~~~dlvr~~~ 195 (214)
T 3tq6_A 181 QMIEVGRKDLLRRTI 195 (214)
T ss_dssp HHHHTTBGGGSCSCC
T ss_pred hCccccccccccccc
Confidence 999999888877543
No 35
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.83 E-value=7e-22 Score=150.16 Aligned_cols=89 Identities=26% Similarity=0.427 Sum_probs=81.5
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032798 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (133)
Q Consensus 31 ~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 110 (133)
++..+||+.||||+|||+|||+++|..++.+|| .+|+++||++|++|++++|++|+++|++++++|+.+|++|+.
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999998876555 499999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCC
Q 032798 111 QLVIFFGIIVVYND 124 (133)
Q Consensus 111 k~~~~~~~~~~~~~ 124 (133)
++.+....++|...
T Consensus 213 k~~~~~~~dlvr~~ 226 (238)
T 3tmm_A 213 QMIEVGRKDLLRRT 226 (238)
T ss_dssp HHHHTTCGGGSCSC
T ss_pred hCccccccchhhcc
Confidence 99999999888754
No 36
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.83 E-value=8.6e-21 Score=142.14 Aligned_cols=79 Identities=18% Similarity=0.402 Sum_probs=74.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032798 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLVI 114 (133)
Q Consensus 35 ~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k~~~ 114 (133)
.+|++|+||+|||++||+++|..|+.+||+ +++.+|+++||++|+.|++++|.+|+++|..++++|..+|..|...++.
T Consensus 5 ~~p~~PKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp 83 (214)
T 3tq6_A 5 VLASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 83 (214)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCH
Confidence 357899999999999999999999999999 9999999999999999999999999999999999999999999876643
No 37
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.83 E-value=3.8e-22 Score=130.97 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=64.2
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHH
Q 032798 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104 (133)
Q Consensus 31 ~k~~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e 104 (133)
.+..+||+.||||+|||||||+++|+.|+.+||+ ++ +++|+ ++|+.|++++|++|+++|+.++++|..+
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4566799999999999999999999999999999 88 88887 9999999999999999999999998753
No 38
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.7e-21 Score=126.16 Aligned_cols=69 Identities=22% Similarity=0.389 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHhcCCChhhhHHHHHHHHHHHHHHHHHH
Q 032798 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAA---GEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105 (133)
Q Consensus 34 ~~dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l---~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 105 (133)
..++++||||+||||+|++++|++|+.+ + +++.||+++| |++|+.|+++||++|+++|++++++|..++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~-~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--G-LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--T-CCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999988 5 8899999999 999999999999999999999999998875
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.75 E-value=1.4e-18 Score=124.13 Aligned_cols=73 Identities=27% Similarity=0.523 Sum_probs=70.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032798 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (133)
Q Consensus 37 p~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 110 (133)
|++|+||+||||+|+++.+..|..+||+ +++.+|+++||++|+.||+++|.+|.++|..++++|..++++|..
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 74 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 6789999999999999999999999999 999999999999999999999999999999999999999999964
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=72.19 E-value=4.4 Score=29.31 Aligned_cols=46 Identities=9% Similarity=0.232 Sum_probs=35.5
Q ss_pred CCHHHHHHH-HHHHhcCCChhhhHHHHHHHHHH-HHHHHHHHHHHHHh
Q 032798 66 KSVATVGKA-AGEKWKSMSEDEKAPFVERAEKR-KSDYNKNMQDYNKQ 111 (133)
Q Consensus 66 ~~~~ei~k~-l~~~Wk~ls~~eK~~y~~~A~~~-k~~y~~e~~~y~~k 111 (133)
.++..+++. ||..|+.+|+++++.|.+..... ..-|-..+..|..+
T Consensus 72 ~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 72 ADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp BCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred cCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 456666665 58999999999999999887765 45677777777654
No 41
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=35.83 E-value=88 Score=20.18 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032798 50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLVIF 115 (133)
Q Consensus 50 F~~~~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k~~~~ 115 (133)
|+.+.++-+- -++ ++..++...|-+.|..+..-|=+.|.-.+...+..| ++.+-+.++.+.
T Consensus 29 iLaER~kpL~--id~-l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~y--EI~eL~~rV~dl 89 (106)
T 1j1d_B 29 ILAERRKVLA--IDH-LNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKY--EINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHH--HTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTC
T ss_pred HHHHhCCCCC--CCC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhH--HHHHHHHHHHHh
Confidence 4555555442 233 778899999999999988777777988888777777 566666666665
No 42
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.18 E-value=76 Score=22.25 Aligned_cols=26 Identities=4% Similarity=0.043 Sum_probs=15.7
Q ss_pred HHhcCCChhhhHHHHHHHHHHHHHHH
Q 032798 77 EKWKSMSEDEKAPFVERAEKRKSDYN 102 (133)
Q Consensus 77 ~~Wk~ls~~eK~~y~~~A~~~k~~y~ 102 (133)
..|-+||+++++.+.++-++...+-.
T Consensus 63 q~~LnLT~EQq~ql~~I~~e~r~~~~ 88 (175)
T 3lay_A 63 QGGSPLTTEQQATAQKIYDDYYTQTS 88 (175)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999877665544444
No 43
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=28.19 E-value=75 Score=20.43 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCChhhhHHHHHHHHH
Q 032798 72 GKAAGEKWKSMSEDEKAPFVERAEK 96 (133)
Q Consensus 72 ~k~l~~~Wk~ls~~eK~~y~~~A~~ 96 (133)
.+.-..++.-|++++|..|.+..++
T Consensus 81 ~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 81 METQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4444688999999999999876543
No 44
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=25.58 E-value=1.3e+02 Score=22.58 Aligned_cols=22 Identities=9% Similarity=0.362 Sum_probs=18.2
Q ss_pred HHhcCCChhhhHHHHHHHHHHH
Q 032798 77 EKWKSMSEDEKAPFVERAEKRK 98 (133)
Q Consensus 77 ~~Wk~ls~~eK~~y~~~A~~~k 98 (133)
..|..||+++++...+.+.+..
T Consensus 235 ~~w~~L~~e~q~~i~~a~~e~~ 256 (328)
T 3u65_B 235 GSWARIPSRYHDAMLQAATRVR 256 (328)
T ss_dssp HHHTTSCGGGHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHH
Confidence 5699999999999988766543
No 45
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=25.09 E-value=2.1e+02 Score=21.06 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hccccccCC
Q 032798 68 VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLVIF---FGIIVVYND 124 (133)
Q Consensus 68 ~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k~~~~---~~~~~~~~~ 124 (133)
...++..|++.-..+.++.+..|.+-++....+-..--..|+..+... .+..++.|+
T Consensus 112 ~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~ 171 (282)
T 3mfq_A 112 YKSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHD 171 (282)
T ss_dssp HHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSS
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECc
Confidence 456777888888999999999999988887777776667777776653 234444443
No 46
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=24.06 E-value=1.1e+02 Score=20.75 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCChhhhHHHHHHHHHHHH
Q 032798 72 GKAAGEKWKSMSEDEKAPFVERAEKRKS 99 (133)
Q Consensus 72 ~k~l~~~Wk~ls~~eK~~y~~~A~~~k~ 99 (133)
.+.-.+++.-|++++|..|.+..++...
T Consensus 109 ~k~~~qiy~vLTPEQk~ql~e~~~~r~~ 136 (145)
T 3itf_A 109 AKVRNQMYRLLTPEQQAVLNEKHQQRME 136 (145)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 3444588999999999999876555433
No 47
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.22 E-value=1.4e+02 Score=18.30 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhcCCChhhh
Q 032798 52 EEFRKQFKEAHPNNKS----VATVGKAAGEKWKSMSEDEK 87 (133)
Q Consensus 52 ~~~r~~~k~~~p~~~~----~~ei~k~l~~~Wk~ls~~eK 87 (133)
+..|...+.-||+... ..+....|.+.|..|++..+
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~ 75 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATL 75 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 4455566777898332 35677888899998886654
No 48
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=22.96 E-value=1.6e+02 Score=19.71 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 032798 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLVIFFGI 118 (133)
Q Consensus 66 ~~~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k~~~~~~~ 118 (133)
++..++...|.+.|..+..-|=+.|.-.+...+..| ++.+-+.+..+..+.
T Consensus 58 ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~y--EI~dL~~rV~Dl~gK 108 (133)
T 1j1d_C 58 LGFAELQDLARQLHARVDKVDEERYDIEAKVTKNIT--EIADLTQKIFDLRGK 108 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcch--HHHHHHHHHHHHHcc
Confidence 467899999999999888777777988888877777 567777777766543
No 49
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=22.00 E-value=1.2e+02 Score=18.31 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCChhhh
Q 032798 52 EEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEK 87 (133)
Q Consensus 52 ~~~r~~~k~~~p~~~-~~~ei~k~l~~~Wk~ls~~eK 87 (133)
+..|...+.-||+.. ...+..+.|.+.|..|++..+
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~ 63 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQK 63 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHH
Confidence 445556677889843 345677888888888886544
No 50
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=21.65 E-value=1.7e+02 Score=21.59 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.7
Q ss_pred HHHhcCCChhhhHHHHHHHHHH
Q 032798 76 GEKWKSMSEDEKAPFVERAEKR 97 (133)
Q Consensus 76 ~~~Wk~ls~~eK~~y~~~A~~~ 97 (133)
...|..||++.++...+.+.+.
T Consensus 220 ~~~~~~L~~~~q~~i~~a~~~a 241 (312)
T 2xwv_A 220 NETYKELPEDLQKVVKDAAENA 241 (312)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHH
Confidence 4679999999999998766543
No 51
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=21.63 E-value=1.6e+02 Score=18.56 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCC---hhhhHHHHHHHHHHHHHHHHHHH
Q 032798 69 ATVGKAAGEKWKSMS---EDEKAPFVERAEKRKSDYNKNMQ 106 (133)
Q Consensus 69 ~ei~k~l~~~Wk~ls---~~eK~~y~~~A~~~k~~y~~e~~ 106 (133)
.+-...|...|.+|+ |.++..|.+..++....++..+.
T Consensus 26 q~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e 66 (94)
T 3fx7_A 26 REEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE 66 (94)
T ss_dssp HHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556777888887 88999999988887666655444
No 52
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=20.07 E-value=1.8e+02 Score=21.60 Aligned_cols=49 Identities=6% Similarity=0.026 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 032798 68 VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLVIFF 116 (133)
Q Consensus 68 ~~ei~k~l~~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k~~~~~ 116 (133)
...++..|++.-..+.++.+..|..-++....+-..--..|+..+....
T Consensus 132 ~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~ 180 (294)
T 3hh8_A 132 GIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIA 180 (294)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4456667777778889999999998888877777766677777666543
Done!