Query 032799
Match_columns 133
No_of_seqs 106 out of 210
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:06:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1743 Ferric reductase-like 100.0 3.7E-53 8E-58 321.4 9.4 130 4-133 1-130 (137)
2 COG5120 GOT1 Membrane protein 100.0 2E-40 4.4E-45 248.4 7.1 124 4-132 1-124 (129)
3 PF04178 Got1: Got1/Sft2-like 99.7 2.2E-17 4.8E-22 121.7 7.7 112 11-131 1-117 (118)
4 KOG2887 Membrane protein invol 95.8 0.026 5.7E-07 45.3 5.9 93 15-107 51-159 (175)
5 PF13129 DUF3953: Protein of u 76.4 2 4.3E-05 26.8 1.7 34 45-82 5-38 (42)
6 PF03729 DUF308: Short repeat 71.8 14 0.00031 23.1 5.0 63 19-81 2-65 (72)
7 COG5102 SFT2 Membrane protein 70.5 4.6 0.0001 33.0 3.0 44 36-79 102-145 (201)
8 PRK10209 acid-resistance membr 59.3 84 0.0018 24.5 8.6 96 15-110 23-127 (190)
9 PF12390 Se-cys_synth_N: Selen 50.1 6.2 0.00013 23.9 0.3 22 111-132 1-22 (40)
10 PF05915 DUF872: Eukaryotic pr 49.1 18 0.00038 27.0 2.6 37 13-49 47-92 (115)
11 PF14145 YrhK: YrhK-like prote 42.7 47 0.001 21.9 3.7 31 20-50 15-45 (59)
12 PF09925 DUF2157: Predicted me 37.5 1.4E+02 0.003 22.1 6.0 80 12-94 32-113 (145)
13 KOG2788 Glycosyltransferase [C 37.5 28 0.00061 31.4 2.5 46 69-121 261-306 (418)
14 PRK02935 hypothetical protein; 32.8 34 0.00075 25.8 2.0 51 6-61 9-59 (110)
15 PF05915 DUF872: Eukaryotic pr 31.8 79 0.0017 23.5 3.8 39 36-81 50-88 (115)
16 PRK05771 V-type ATP synthase s 30.6 1.3E+02 0.0028 27.7 5.7 94 16-114 449-560 (646)
17 PF04156 IncA: IncA protein; 29.3 86 0.0019 23.8 3.7 19 34-52 43-61 (191)
18 PF04367 DUF502: Protein of un 26.3 74 0.0016 22.7 2.8 41 86-132 10-50 (108)
19 PF12158 DUF3592: Protein of u 25.7 1.9E+02 0.004 20.4 4.7 24 14-37 2-25 (148)
20 PF02038 ATP1G1_PLM_MAT8: ATP1 22.6 1.3E+02 0.0028 19.8 3.1 29 37-66 19-47 (50)
21 PF06570 DUF1129: Protein of u 22.3 3.6E+02 0.0078 21.1 6.2 21 14-34 85-105 (206)
22 PF11023 DUF2614: Protein of u 21.7 57 0.0012 24.8 1.5 25 6-30 8-32 (114)
23 PF07786 DUF1624: Protein of u 21.4 75 0.0016 24.6 2.1 61 37-100 47-114 (223)
No 1
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-53 Score=321.42 Aligned_cols=130 Identities=65% Similarity=1.225 Sum_probs=128.8
Q ss_pred eeccCcceeeeeehhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhhc
Q 032799 4 FEMNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVIG 83 (133)
Q Consensus 4 ~~~~d~qkiGvgl~~~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~~ 83 (133)
||+||.||||+++|++|++|+++|++++|||+|||+||+||++|+++++|.|||+.||.||||.|||+.|+.|++++++|
T Consensus 1 ~~l~d~kkiGvg~TgfG~ff~l~Gii~ffD~aLLa~GNlLfi~GvsliiG~~~t~~FF~r~~k~kGti~F~~G~l~vl~~ 80 (137)
T KOG1743|consen 1 MELNDLKKIGVGLTGFGVFFFLFGIILFFDKALLAMGNLLFIIGVSLIIGFRKTMQFFFRRQKMKGTISFLGGVLLVLFG 80 (137)
T ss_pred CccchhhHhCeEEechhHHHHHHHHHHHHhhHHHHhcchHHHHhHHHhhcchhhhhhheehhhcceeeehhhhHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhccchHHHHHhhhhCCccccccccchhHHhhhcC
Q 032799 84 WPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDSM 133 (133)
Q Consensus 84 ~p~iG~i~E~~G~~~LFg~F~P~i~~flr~~Pvig~il~~P~i~~~~~~l 133 (133)
||++||++|+||+++||++|+|++.+|+|++|++|||+|+|++++.+||+
T Consensus 81 wPi~Gm~lE~~Gff~LF~gF~P~i~~flrs~p~lG~i~~~p~i~~~~drl 130 (137)
T KOG1743|consen 81 WPIFGMILETYGFFVLFRGFFPVIVVFLRSIPVLGWILNLPGIRSFLDRL 130 (137)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCccccccccCccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999985
No 2
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-40 Score=248.39 Aligned_cols=124 Identities=33% Similarity=0.810 Sum_probs=120.7
Q ss_pred eeccCcceeeeeehhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhhc
Q 032799 4 FEMNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVIG 83 (133)
Q Consensus 4 ~~~~d~qkiGvgl~~~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~~ 83 (133)
||++|.||+|++.|+.|..|+..|+.+||||+++++||++++.|+.+++|.||++.||.||+|++||+.|+.|.+++++|
T Consensus 1 mwl~~lqk~GV~~t~~Gflffl~Gif~ffDraLl~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~l~~ 80 (129)
T COG5120 1 MWLMNLQKSGVVVTSIGFLFFLVGIFLFFDRALLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLYR 80 (129)
T ss_pred CchhhhhHcCeEEeehhHHHHHHHHHHHhhhHHHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhccchHHHHHhhhhCCccccccccchhHHhhhc
Q 032799 84 WPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDS 132 (133)
Q Consensus 84 ~p~iG~i~E~~G~~~LFg~F~P~i~~flr~~Pvig~il~~P~i~~~~~~ 132 (133)
||++|+++|+.|+++||+||+|++.+|||.+|.+| |+|.++..+
T Consensus 81 fp~~GF~~E~LG~f~Lf~df~p~i~~fLRt~p~ig-----p~idrl~g~ 124 (129)
T COG5120 81 FPMFGFLLETLGLFLLFRDFIPTIRTFLRTLPLIG-----PYIDRLLGR 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHhhhce
Confidence 99999999999999999999999999999999999 888776554
No 3
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=99.71 E-value=2.2e-17 Score=121.66 Aligned_cols=112 Identities=34% Similarity=0.658 Sum_probs=104.0
Q ss_pred eeeeeehhhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhhchhhH
Q 032799 11 KIGLGLTGFGIFFTFLGIIFFFDK---GLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVIGWPIL 87 (133)
Q Consensus 11 kiGvgl~~~G~~f~~lGv~lffDr---~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~~~p~i 87 (133)
|+|+.+...|..+.++|++++.|| .+.++||+++++|..+++||+|..+++.+|+|+++|++|+.+++++++ .
T Consensus 1 ~~G~~~~~l~~~~~~~~~~~~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~----~ 76 (118)
T PF04178_consen 1 KIGIICFFLSLIFFFLGVLLFFPRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLY----F 76 (118)
T ss_pred CeehHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH----H
Confidence 789999999999999999999999 999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHhhccch-HHHHHhhhhC-CccccccccchhHHhhh
Q 032799 88 GMILETYGFIVLFSGFW-PTLSVFLQRI-PILGWLFQQPFVRSFFD 131 (133)
Q Consensus 88 G~i~E~~G~~~LFg~F~-P~i~~flr~~-Pvig~il~~P~i~~~~~ 131 (133)
|+..|.|++.++|+.+. |..+.|+.+. |. |+ |.+|++.+
T Consensus 77 ~~~~~~~~l~llf~~~q~~al~wy~~s~iP~-g~----~~~~~~~~ 117 (118)
T PF04178_consen 77 AFILKSYGLTLLFSIFQFPALIWYLLSYIPF-GR----PGLKKFFS 117 (118)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCCC-hH----HHHHHHhc
Confidence 99999999999999988 8888888875 95 63 77776653
No 4
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.026 Score=45.31 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=74.4
Q ss_pred eehhhHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhh---c
Q 032799 15 GLTGFGIFFTFLGIIFFFDKG--------LLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVI---G 83 (133)
Q Consensus 15 gl~~~G~~f~~lGv~lffDr~--------lLalGNilfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~---~ 83 (133)
.+.+.|+++..++.++|.--. +-++||++++.+-..++||++=++--+.|+|+-.|+.|+.-.++-++ .
T Consensus 51 ~cl~~gv~c~~l~~~lf~v~~~~~~kFal~~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~ 130 (175)
T KOG2887|consen 51 ICLAGGVLCFLLAMVLFPVLVVSPRKFALLYTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALW 130 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccceeehhHHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999998655 67899999999999999999999999999999999999988777543 1
Q ss_pred -----hhhHHHHHHHHHHHHhhccchHHH
Q 032799 84 -----WPILGMILETYGFIVLFSGFWPTL 107 (133)
Q Consensus 84 -----~p~iG~i~E~~G~~~LFg~F~P~i 107 (133)
-+++=-++|...+.+-==+++|-.
T Consensus 131 ~ks~iLtllf~ilq~laliwYslSyiP~g 159 (175)
T KOG2887|consen 131 LKSKILTLLFCILQVLALIWYSLSYIPFG 159 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 256666777777766554444443
No 5
>PF13129 DUF3953: Protein of unknown function (DUF3953)
Probab=76.37 E-value=2 Score=26.82 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=24.8
Q ss_pred HHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhh
Q 032799 45 IAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVI 82 (133)
Q Consensus 45 l~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~ 82 (133)
+.-..+++|.+... |++|..|..||..|++.++.
T Consensus 5 LG~m~~~~Gi~e~k----k~~k~~g~~~f~~~~f~~~V 38 (42)
T PF13129_consen 5 LGLMMFIIGIEEIK----KERKSSGILSFLVGAFILFV 38 (42)
T ss_pred HHHHHHHHHHHHHH----hcccceehHHHHHHHHheEE
Confidence 33344566666554 78999999999999987654
No 6
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=71.83 E-value=14 Score=23.05 Aligned_cols=63 Identities=24% Similarity=0.376 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhhhccccceee-ehhhhhHHHHh
Q 032799 19 FGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGT-ISFGVGFFFVV 81 (133)
Q Consensus 19 ~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~k~kGt-i~F~~Gi~lvl 81 (133)
.|+....+|+.++.....-...=...+....+.-|..+-.+.+.||++.++. .....|+.-+.
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~ 65 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASLAALAIILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIV 65 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 3788889999999877665554445555566667888888888866543332 23334444433
No 7
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=70.55 E-value=4.6 Score=33.02 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHH
Q 032799 36 LLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFF 79 (133)
Q Consensus 36 lLalGNilfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~l 79 (133)
+-+|||+||+.+...++|+..-++-.+.|||+.=|..|++-.++
T Consensus 102 lwTmgslLfvl~Fg~l~Gf~ayl~~Lts~erlp~s~~ff~t~l~ 145 (201)
T COG5102 102 LWTMGSLLFVLMFGFLLGFRAYLEGLTSKERLPHSSWFFGTTLL 145 (201)
T ss_pred ehhHHHHHHHHHHHHHHhHHHHHHhhhhhhccchhHHHHHHHHH
Confidence 45899999999999999999999999999999999888776655
No 8
>PRK10209 acid-resistance membrane protein; Provisional
Probab=59.34 E-value=84 Score=24.54 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=57.9
Q ss_pred eehhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhhhccccceeee--hhhhhHHHHhh-----chhhH
Q 032799 15 GLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTI--SFGVGFFFVVI-----GWPIL 87 (133)
Q Consensus 15 gl~~~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~k~kGti--~F~~Gi~lvl~-----~~p~i 87 (133)
.....|+....+|++.++|...-...=...+....++-|.-+-...|..|++-+... ....|+..++. .+|..
T Consensus 23 ~~li~Gil~ivlGi~~l~~P~~~~~~~~~~~g~~ll~~Gi~~l~~~~~~~~~~~~~~~~~ll~Gil~ii~Gil~l~~P~~ 102 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFPFVSGDALSTVVGILLICSGIALIVGLFANRSHNFWPMLSGILLGVAYLVLGYFFIRNPEV 102 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456689999999999999987544433344444445556666666665444322211 23445544443 57877
Q ss_pred HHHHH--HHHHHHhhccchHHHHHh
Q 032799 88 GMILE--TYGFIVLFSGFWPTLSVF 110 (133)
Q Consensus 88 G~i~E--~~G~~~LFg~F~P~i~~f 110 (133)
+...= ..|.+.+..+..-.+.++
T Consensus 103 ~~~~l~~l~g~~~iv~Gi~~i~~a~ 127 (190)
T PRK10209 103 GMFSLAAFIAGLFCVGGIIRLMSGY 127 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77544 367777777777666554
No 9
>PF12390 Se-cys_synth_N: Selenocysteine synthase N terminal
Probab=50.05 E-value=6.2 Score=23.86 Aligned_cols=22 Identities=23% Similarity=0.575 Sum_probs=18.9
Q ss_pred hhhCCccccccccchhHHhhhc
Q 032799 111 LQRIPILGWLFQQPFVRSFFDS 132 (133)
Q Consensus 111 lr~~Pvig~il~~P~i~~~~~~ 132 (133)
+|++|-+..+|+.|.++...++
T Consensus 1 lR~LPsVD~lL~~~~~~~l~~~ 22 (40)
T PF12390_consen 1 LRQLPSVDELLQEPEIQDLIER 22 (40)
T ss_pred CCCCchHHHHHhChhhHHHHHH
Confidence 5899999999999999887654
No 10
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=49.07 E-value=18 Score=26.96 Aligned_cols=37 Identities=32% Similarity=0.669 Sum_probs=18.8
Q ss_pred eeeehhhHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHhH
Q 032799 13 GLGLTGFGIFFTFLGIIFFFDK---------GLLAMGNILFIAGVS 49 (133)
Q Consensus 13 Gvgl~~~G~~f~~lGv~lffDr---------~lLalGNilfl~Gl~ 49 (133)
++.|..+|..+...|.+++.++ +++.+|=+.|+=|..
T Consensus 47 a~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y 92 (115)
T PF05915_consen 47 AVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFY 92 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHH
Confidence 4455555555555555555554 444444444444443
No 11
>PF14145 YrhK: YrhK-like protein
Probab=42.73 E-value=47 Score=21.90 Aligned_cols=31 Identities=35% Similarity=0.652 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhHh
Q 032799 20 GIFFTFLGIIFFFDKGLLAMGNILFIAGVSL 50 (133)
Q Consensus 20 G~~f~~lGv~lffDr~lLalGNilfl~Gl~l 50 (133)
|...+..|-++|+-+..-..|..+|+.|=.+
T Consensus 15 ~~~~FliGSilfl~~~~~~~g~wlFiiGS~~ 45 (59)
T PF14145_consen 15 GGLLFLIGSILFLPESLYTAGTWLFIIGSIL 45 (59)
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 4444455555555556666777777666433
No 12
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=37.51 E-value=1.4e+02 Score=22.05 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=48.0
Q ss_pred eeeeehhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhh--hccccceeeehhhhhHHHHhhchhhHHH
Q 032799 12 IGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFF--MKRQNYKGTISFGVGFFFVVIGWPILGM 89 (133)
Q Consensus 12 iGvgl~~~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF--~~~~k~kGti~F~~Gi~lvl~~~p~iG~ 89 (133)
.-..+..+|..+..+|++.|+-..==.++...=+......+-..-...+. .|+++.-+..+...+.+++-. .+++
T Consensus 32 ~~~~l~~lGall~~~gii~fvA~nW~~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ga---~ial 108 (145)
T PF09925_consen 32 LARILLYLGALLLGLGIILFVAANWDDIPRLAKLGLLLALLLLSYVGGFWLWRRRSPRLAEALLLLGAVLFGA---LIAL 108 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH---HHHH
Confidence 45678889999999999999988777776654322222221112222222 266666666777666666553 4445
Q ss_pred HHHHH
Q 032799 90 ILETY 94 (133)
Q Consensus 90 i~E~~ 94 (133)
+-|+|
T Consensus 109 igQ~y 113 (145)
T PF09925_consen 109 IGQIY 113 (145)
T ss_pred HHhHh
Confidence 55554
No 13
>KOG2788 consensus Glycosyltransferase [Carbohydrate transport and metabolism]
Probab=37.47 E-value=28 Score=31.35 Aligned_cols=46 Identities=30% Similarity=0.501 Sum_probs=28.4
Q ss_pred eeehhhhhHHHHhhchhhHHHHHHHHHHHHhhccchHHHHHhhhhCCcccccc
Q 032799 69 GTISFGVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLF 121 (133)
Q Consensus 69 Gti~F~~Gi~lvl~~~p~iG~i~E~~G~~~LFg~F~P~i~~flr~~Pvig~il 121 (133)
-|-|++.|..+-. +|++=.-=-...|| |+|.+++|+.++|=+=.+.
T Consensus 261 DTfcyfaGMt~AV-----VgILGHFSKTllLF--FiPQI~NFlyS~PQLfhlV 306 (418)
T KOG2788|consen 261 DTFCYFAGMTFAV-----VGILGHFSKTLLLF--FIPQILNFLYSLPQLFHLV 306 (418)
T ss_pred cceeeeccchhhh-----hHHhhhhHHHHHHH--HHHHHHHHHHhhHHHcCcc
Confidence 4667777765532 33332222234455 8999999999999654443
No 14
>PRK02935 hypothetical protein; Provisional
Probab=32.80 E-value=34 Score=25.82 Aligned_cols=51 Identities=27% Similarity=0.544 Sum_probs=31.5
Q ss_pred ccCcceeeeeehhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHhhcchhhhhhhh
Q 032799 6 MNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFF 61 (133)
Q Consensus 6 ~~d~qkiGvgl~~~G~~f~~lGv~lffDr~lLalGNilfl~Gl~l~iG~~kt~~FF 61 (133)
+|..+..+..++..|+...-+|+.+ |+--.+--+..+.|+..++ -+|.-||
T Consensus 9 INkiRt~aL~lvfiG~~vMy~Giff---~~~~~~m~ifm~~G~l~~l--~S~vvYF 59 (110)
T PRK02935 9 INKIRTFALSLVFIGFIVMYLGIFF---RESIIIMTIFMLLGFLAVI--ASTVVYF 59 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4566677888888898888888433 3333333455556666665 3444444
No 15
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=31.85 E-value=79 Score=23.50 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHh
Q 032799 36 LLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVV 81 (133)
Q Consensus 36 lLalGNilfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl 81 (133)
|+..|-++.+.|..+..+.-. .++-++...+..|++..+
T Consensus 50 Lli~G~~li~~g~l~~~~~i~-------~~~~~~~~llilG~L~fI 88 (115)
T PF05915_consen 50 LLIFGTVLIIIGLLLFFGHID-------GDRDRGWALLILGILCFI 88 (115)
T ss_pred HHHHHHHHHHHHHHHHhcccC-------CCCcccchHHHHHHHHHh
Confidence 334455555555555554211 455677778888877655
No 16
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=30.63 E-value=1.3e+02 Score=27.69 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=47.3
Q ss_pred ehhhHHHHHHHHHHHHh-----h-----hhHHHHHHHHHHHHhHhhcchhhhhhhhhcccc---ceeeehhhhhHHHHhh
Q 032799 16 LTGFGIFFTFLGIIFFF-----D-----KGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQN---YKGTISFGVGFFFVVI 82 (133)
Q Consensus 16 l~~~G~~f~~lGv~lff-----D-----r~lLalGNilfl~Gl~l~iG~~kt~~FF~~~~k---~kGti~F~~Gi~lvl~ 82 (133)
-..+|++-.++|.++=. + .-+=.+|.++++.|+.+.....-. ...+.- .-|-.....|+++++.
T Consensus 449 sl~iGvi~i~~g~~l~~~~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~ 525 (646)
T PRK05771 449 SLLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGGFG---LVVGLGPLGLIGKYLIIGGVVLIIL 525 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhccchHHHHHHHHHHHHHHHHHHH
Confidence 34567777777766511 1 111137888888888776521100 010000 1222355556665543
Q ss_pred ch-----hhHHHHHHHHHHHHhhccchHHHHHhhhhC
Q 032799 83 GW-----PILGMILETYGFIVLFSGFWPTLSVFLQRI 114 (133)
Q Consensus 83 ~~-----p~iG~i~E~~G~~~LFg~F~P~i~~flr~~ 114 (133)
+- ...+.+. .++.+...+ ++..++||.|-.
T Consensus 526 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~d~lSY~RL~ 560 (646)
T PRK05771 526 GEGIDGKSLGGALG-GLGLYEITG-YLGDVLSYARLM 560 (646)
T ss_pred hcchhccccchhhh-hhhHHHHHH-HHHHHHHHHHHH
Confidence 21 1122222 566666666 777788887754
No 17
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.26 E-value=86 Score=23.82 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHhHhhc
Q 032799 34 KGLLAMGNILFIAGVSLTI 52 (133)
Q Consensus 34 r~lLalGNilfl~Gl~l~i 52 (133)
-+++|+|=+++..|+....
T Consensus 43 ~~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 43 IALLALGVVLLSLGLLCLL 61 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566677777777776655
No 18
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=26.25 E-value=74 Score=22.74 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhhccchHHHHHhhhhCCccccccccchhHHhhhc
Q 032799 86 ILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDS 132 (133)
Q Consensus 86 ~iG~i~E~~G~~~LFg~F~P~i~~flr~~Pvig~il~~P~i~~~~~~ 132 (133)
++|.+++.+=--. .+-..=..+.++|++++| +..+|+++|.
T Consensus 10 ~iG~l~~~~~g~~----l~~~~e~ll~riP~v~~i--Y~~~k~~~~~ 50 (108)
T PF04367_consen 10 LIGLLARNYFGKW----LLNWLERLLQRIPLVKSI--YSSIKQLVES 50 (108)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHCCchHHH--HHHHHHHHHH
Confidence 5677766543322 233344578899999998 6777887764
No 19
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=25.65 E-value=1.9e+02 Score=20.41 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=13.2
Q ss_pred eeehhhHHHHHHHHHHHHhhhhHH
Q 032799 14 LGLTGFGIFFTFLGIIFFFDKGLL 37 (133)
Q Consensus 14 vgl~~~G~~f~~lGv~lffDr~lL 37 (133)
+.+.-+|+++.++|+.++......
T Consensus 2 ~~~~~~~~i~l~~g~~~~~~~~~~ 25 (148)
T PF12158_consen 2 VFLLLFGIIFLLIGLVLLIGGIFL 25 (148)
T ss_pred eEhHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655444333
No 20
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=22.65 E-value=1.3e+02 Score=19.78 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhHhhcchhhhhhhhhcccc
Q 032799 37 LAMGNILFIAGVSLTIGLKSTMQFFMKRQN 66 (133)
Q Consensus 37 LalGNilfl~Gl~l~iG~~kt~~FF~~~~k 66 (133)
|...-+||+.|+.+++. +|.-.=+.|+++
T Consensus 19 Li~A~vlfi~Gi~iils-~kckCk~~qk~~ 47 (50)
T PF02038_consen 19 LIFAGVLFILGILIILS-GKCKCKFNQKPR 47 (50)
T ss_dssp HHHHHHHHHHHHHHHCT-THHHHHHSTTTT
T ss_pred hHHHHHHHHHHHHHHHc-CccccCCCCCCC
Confidence 34556788888877775 555545555543
No 21
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.27 E-value=3.6e+02 Score=21.11 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=17.8
Q ss_pred eeehhhHHHHHHHHHHHHhhh
Q 032799 14 LGLTGFGIFFTFLGIIFFFDK 34 (133)
Q Consensus 14 vgl~~~G~~f~~lGv~lffDr 34 (133)
.++..+|++..+-|++.+|+.
T Consensus 85 ~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 85 NSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 456778899999999999988
No 22
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.73 E-value=57 Score=24.76 Aligned_cols=25 Identities=28% Similarity=0.646 Sum_probs=19.1
Q ss_pred ccCcceeeeeehhhHHHHHHHHHHH
Q 032799 6 MNDRKKIGLGLTGFGIFFTFLGIIF 30 (133)
Q Consensus 6 ~~d~qkiGvgl~~~G~~f~~lGv~l 30 (133)
+|+.+..++.|+-.|+....+|+++
T Consensus 8 iN~~R~~al~lif~g~~vmy~gi~f 32 (114)
T PF11023_consen 8 INKIRTFALSLIFIGMIVMYIGIFF 32 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4566677888888888888888644
No 23
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=21.38 E-value=75 Score=24.58 Aligned_cols=61 Identities=26% Similarity=0.435 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhHhhcchhhhhhhhhccccceeeehhhhhHHHHhhchh-------hHHHHHHHHHHHHhh
Q 032799 37 LAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVIGWP-------ILGMILETYGFIVLF 100 (133)
Q Consensus 37 LalGNilfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~~~p-------~iG~i~E~~G~~~LF 100 (133)
++..=.+|++|+++.+-.+|+.+- |+.-.|+...+..|..+....|. ..| +++.+|...+-
T Consensus 47 ~~ap~F~fl~G~s~~l~~~~~~~~--~~~~~R~~~l~~~g~~i~~~~~~~~~~~~i~~g-IL~~ig~~~ll 114 (223)
T PF07786_consen 47 LAAPLFLFLAGISLALSTGRRRRR--RKFLKRGLKLFLLGLLINLLTFFFFPEGFIYFG-ILQFIGLSMLL 114 (223)
T ss_pred HHHHHHHHHHHHHHHHhcccccch--hHHHHHHHHHHHHHHHHHHHHHHhcCCceeehh-HHHHHHHHHHH
Confidence 455667899999999887777655 44446777788889888777652 112 67777776654
Done!