Query 032799
Match_columns 133
No_of_seqs 106 out of 210
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 30.9 60 0.0021 24.3 4.3 73 34-107 75-150 (194)
2 1b35_D CRPV, protein (cricket 28.9 18 0.00062 23.2 0.9 16 110-125 27-42 (57)
3 2jp3_A FXYD domain-containing 15.5 1.3E+02 0.0044 20.0 2.9 31 37-68 22-52 (67)
4 2jo1_A Phospholemman; FXYD1, N 11.3 1.9E+02 0.0065 19.4 2.9 29 37-66 21-49 (72)
5 2ks1_B Epidermal growth factor 10.3 1.2E+02 0.0041 18.2 1.5 9 59-67 32-40 (44)
6 4fb5_A Probable oxidoreductase 9.3 64 0.0022 24.9 -0.1 19 3-21 17-35 (393)
7 2l2t_A Receptor tyrosine-prote 8.8 1.5E+02 0.005 17.9 1.4 10 58-67 30-39 (44)
8 3gp2_B Calcium/calmodulin-depe 7.9 30 0.001 18.5 -1.8 12 61-72 3-14 (22)
9 1z00_B DNA repair endonuclease 6.9 1.9E+02 0.0066 19.1 1.4 17 103-119 12-28 (84)
10 2juz_A UPF0352 protein HI0840; 6.1 2.2E+02 0.0074 19.5 1.4 11 33-43 31-41 (80)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=30.86 E-value=60 Score=24.31 Aligned_cols=73 Identities=11% Similarity=0.101 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHhHhhcchhhhh-hhhhccc-cceeeehhhhhHHHHhhchh-hHHHHHHHHHHHHhhccchHHH
Q 032799 34 KGLLAMGNILFIAGVSLTIGLKSTM-QFFMKRQ-NYKGTISFGVGFFFVVIGWP-ILGMILETYGFIVLFSGFWPTL 107 (133)
Q Consensus 34 r~lLalGNilfl~Gl~l~iG~~kt~-~FF~~~~-k~kGti~F~~Gi~lvl~~~p-~iG~i~E~~G~~~LFg~F~P~i 107 (133)
..+..+|.+++++|+.+-.--.++. ++|..+. ..+++-.--.|.. =..|+| ..|.+++..|.....++..+.+
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y-~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~ 150 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIY-KNIRHPMYAHLWLWVITQGIILSNWVVLI 150 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTT-TTBSSHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcc-hhccCccHHHHHHHHHHHHHHhccHHHHH
Confidence 4567899999999999988877776 4555311 1112222222221 134666 5688888888777777665433
No 2
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=28.89 E-value=18 Score=23.25 Aligned_cols=16 Identities=44% Similarity=0.825 Sum_probs=13.7
Q ss_pred hhhhCCccccccccch
Q 032799 110 FLQRIPILGWLFQQPF 125 (133)
Q Consensus 110 flr~~Pvig~il~~P~ 125 (133)
-++.+|++|++++-|.
T Consensus 27 t~s~ipilgn~fs~pa 42 (57)
T 1b35_D 27 TLSHIPVLGNIFSTPA 42 (57)
T ss_dssp CTTCCCCSCCSSSSCT
T ss_pred hhhccccccccccchH
Confidence 3678999999999885
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=15.47 E-value=1.3e+02 Score=19.96 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhHhhcchhhhhhhhhccccce
Q 032799 37 LAMGNILFIAGVSLTIGLKSTMQFFMKRQNYK 68 (133)
Q Consensus 37 LalGNilfl~Gl~l~iG~~kt~~FF~~~~k~k 68 (133)
|...-+||+.|+.+++. +|.-.=|.||++-+
T Consensus 22 LifA~vLfi~GI~iilS-~kcrCk~~qk~~~~ 52 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALS-GKCKCRRNHTPSSL 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHT-THHHHHHTCCTTTS
T ss_pred hhhHHHHHHHHHHHHHc-CcccccCCCCCCCC
Confidence 44566788888888874 45666676665543
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=11.34 E-value=1.9e+02 Score=19.38 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhHhhcchhhhhhhhhcccc
Q 032799 37 LAMGNILFIAGVSLTIGLKSTMQFFMKRQN 66 (133)
Q Consensus 37 LalGNilfl~Gl~l~iG~~kt~~FF~~~~k 66 (133)
|...-+||+.|+.+++. +|.-.=|.||++
T Consensus 21 LifA~vLfi~GI~iilS-~KckCk~~qk~r 49 (72)
T 2jo1_A 21 LVIAGILFILGILIVLS-RRCRCKFNQQQR 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHHc-CccccCCCCCCC
Confidence 44566788888888774 445566666654
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.33 E-value=1.2e+02 Score=18.23 Aligned_cols=9 Identities=33% Similarity=0.803 Sum_probs=4.4
Q ss_pred hhhhccccc
Q 032799 59 QFFMKRQNY 67 (133)
Q Consensus 59 ~FF~~~~k~ 67 (133)
.||.||+|.
T Consensus 32 ~~~~RRr~~ 40 (44)
T 2ks1_B 32 GLFMRRRHI 40 (44)
T ss_dssp HHHHHTTTC
T ss_pred HHHhhhhHh
Confidence 445555544
No 6
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=9.31 E-value=64 Score=24.86 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=10.6
Q ss_pred eeeccCcceeeeeehhhHH
Q 032799 3 SFEMNDRKKIGLGLTGFGI 21 (133)
Q Consensus 3 ~~~~~d~qkiGvgl~~~G~ 21 (133)
+++++..|||.+|++|.|-
T Consensus 17 ~~~~~~MkkirvgiIG~G~ 35 (393)
T 4fb5_A 17 NLYFQSMKPLGIGLIGTGY 35 (393)
T ss_dssp -------CCCEEEEECCSH
T ss_pred CccccCCCCccEEEEcCCH
Confidence 4567778999999999884
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.80 E-value=1.5e+02 Score=17.93 Aligned_cols=10 Identities=10% Similarity=0.577 Sum_probs=4.9
Q ss_pred hhhhhccccc
Q 032799 58 MQFFMKRQNY 67 (133)
Q Consensus 58 ~~FF~~~~k~ 67 (133)
..||.||+|.
T Consensus 30 ~~~~~RRRr~ 39 (44)
T 2l2t_A 30 FAVYVRRKSI 39 (44)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHhhhhhh
Confidence 3455555543
No 8
>3gp2_B Calcium/calmodulin-dependent protein kinase type II delta chain; metal binding protein, ATP-binding, calmodulin- binding, nucleotide-binding; 1.46A {Homo sapiens}
Probab=7.89 E-value=30 Score=18.50 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=8.4
Q ss_pred hhccccceeeeh
Q 032799 61 FMKRQNYKGTIS 72 (133)
Q Consensus 61 F~~~~k~kGti~ 72 (133)
|..|+|+||.+.
T Consensus 3 FNaRRKLK~aIl 14 (22)
T 3gp2_B 3 FNARRKLKGAIL 14 (26)
T ss_pred ccHHHHHHHHHH
Confidence 556788888654
No 9
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=6.89 E-value=1.9e+02 Score=19.06 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=13.8
Q ss_pred chHHHHHhhhhCCcccc
Q 032799 103 FWPTLSVFLQRIPILGW 119 (133)
Q Consensus 103 F~P~i~~flr~~Pvig~ 119 (133)
+=|...+.|+++|.||+
T Consensus 12 ~N~~~~s~L~~IpGIG~ 28 (84)
T 1z00_B 12 YNPGPQDFLLKMPGVNA 28 (84)
T ss_dssp SCHHHHHHHHTCSSCCH
T ss_pred ccccHHHHHHhCCCCCH
Confidence 44678899999999984
No 10
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=6.14 E-value=2.2e+02 Score=19.47 Aligned_cols=11 Identities=45% Similarity=0.809 Sum_probs=8.8
Q ss_pred hhhHHHHHHHH
Q 032799 33 DKGLLAMGNIL 43 (133)
Q Consensus 33 Dr~lLalGNil 43 (133)
|=.|+++||+.
T Consensus 31 DLSLMvLGN~v 41 (80)
T 2juz_A 31 DLSLIALGNMA 41 (80)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 66899999974
Done!