Query 032799
Match_columns 133
No_of_seqs 106 out of 210
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 09:34:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032799.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032799hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lc0a1 c.2.1.3 (A:2-128,A:247 16.2 17 0.0012 24.1 0.3 16 6-21 2-17 (172)
2 d1utca1 a.118.1.4 (A:331-355) 8.4 22 0.0016 18.3 -0.9 14 114-127 5-18 (26)
3 d2otaa1 a.284.1.1 (A:7-68) Hyp 7.7 77 0.0056 19.2 1.4 11 33-43 25-35 (62)
4 d3dtua1 f.24.1.1 (A:14-551) Ba 7.3 54 0.0039 26.9 0.6 24 7-30 11-34 (538)
5 d2qtia1 a.284.1.1 (A:8-72) Unc 7.1 85 0.0062 19.1 1.4 11 33-43 24-34 (65)
6 d2bcqa2 a.60.12.1 (A:329-385) 6.3 25 0.0019 20.8 -1.5 10 5-14 40-49 (57)
7 d2juza1 a.284.1.1 (A:1-72) Unc 6.1 1E+02 0.0074 19.1 1.4 11 33-43 31-41 (72)
8 d2jrxa1 a.284.1.1 (A:1-75) Unc 6.1 1E+02 0.0074 19.2 1.4 11 33-43 31-41 (75)
9 d2qtva1 a.71.2.1 (A:524-626) S 5.9 1.5E+02 0.011 19.3 2.2 24 102-125 58-81 (103)
10 d2a1ja1 a.60.2.5 (A:837-898) D 5.8 85 0.0062 17.7 0.8 11 109-119 3-13 (62)
No 1
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.16 E-value=17 Score=24.11 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=14.1
Q ss_pred ccCcceeeeeehhhHH
Q 032799 6 MNDRKKIGLGLTGFGI 21 (133)
Q Consensus 6 ~~d~qkiGvgl~~~G~ 21 (133)
++++.|++++++|.|-
T Consensus 2 ~~~~~k~kv~iIG~G~ 17 (172)
T d1lc0a1 2 ITNSGKFGVVVVGVGR 17 (172)
T ss_dssp CCCCCSEEEEEECCSH
T ss_pred CCCCCCcEEEEEcCCH
Confidence 5889999999999985
No 2
>d1utca1 a.118.1.4 (A:331-355) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.44 E-value=22 Score=18.28 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=10.9
Q ss_pred CCccccccccchhH
Q 032799 114 IPILGWLFQQPFVR 127 (133)
Q Consensus 114 ~Pvig~il~~P~i~ 127 (133)
+|+|.++++.|-++
T Consensus 5 ipyi~~vlqnpdla 18 (26)
T d1utca1 5 IPYITNVLQNPDLA 18 (26)
T ss_dssp HHHHHHTTCCHHHH
T ss_pred hhhhhhhccChhHH
Confidence 57888888888654
No 3
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=7.73 E-value=77 Score=19.16 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=9.0
Q ss_pred hhhHHHHHHHH
Q 032799 33 DKGLLAMGNIL 43 (133)
Q Consensus 33 Dr~lLalGNil 43 (133)
|=.|+++||..
T Consensus 25 DLSLMvLGN~v 35 (62)
T d2otaa1 25 DLALMCLGNAV 35 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 66899999974
No 4
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.26 E-value=54 Score=26.93 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.3
Q ss_pred cCcceeeeeehhhHHHHHHHHHHH
Q 032799 7 NDRKKIGLGLTGFGIFFTFLGIIF 30 (133)
Q Consensus 7 ~d~qkiGvgl~~~G~~f~~lGv~l 30 (133)
+|.||||+--...|+.+.++|..+
T Consensus 11 ~dHK~IG~~Yl~~~~~~~~~G~~~ 34 (538)
T d3dtua1 11 TNHKDIGVLYLFTGGLVGLISVAF 34 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999888764
No 5
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176 {Shewanella oneidensis [TaxId: 70863]}
Probab=7.12 E-value=85 Score=19.10 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=8.7
Q ss_pred hhhHHHHHHHH
Q 032799 33 DKGLLAMGNIL 43 (133)
Q Consensus 33 Dr~lLalGNil 43 (133)
|=.|+++||..
T Consensus 24 DLSLMvLGN~v 34 (65)
T d2qtia1 24 DLSLMALGNCV 34 (65)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 66789999964
No 6
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.29 E-value=25 Score=20.78 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=7.5
Q ss_pred eccCcceeee
Q 032799 5 EMNDRKKIGL 14 (133)
Q Consensus 5 ~~~d~qkiGv 14 (133)
.+|+.|+||+
T Consensus 40 ~Ln~~Q~iGL 49 (57)
T d2bcqa2 40 SLTTQQAIGL 49 (57)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHhH
Confidence 3688888875
No 7
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=6.15 E-value=1e+02 Score=19.08 Aligned_cols=11 Identities=45% Similarity=0.809 Sum_probs=8.7
Q ss_pred hhhHHHHHHHH
Q 032799 33 DKGLLAMGNIL 43 (133)
Q Consensus 33 Dr~lLalGNil 43 (133)
|=.|+++||..
T Consensus 31 DLSLMvLGN~v 41 (72)
T d2juza1 31 DLSLIALGNMA 41 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 56789999964
No 8
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=6.14 E-value=1e+02 Score=19.22 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=8.8
Q ss_pred hhhHHHHHHHH
Q 032799 33 DKGLLAMGNIL 43 (133)
Q Consensus 33 Dr~lLalGNil 43 (133)
|=.|+++||..
T Consensus 31 DLSLMvLGN~v 41 (75)
T d2jrxa1 31 DLSLMVLGNMV 41 (75)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 66799999974
No 9
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.92 E-value=1.5e+02 Score=19.30 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=19.7
Q ss_pred cchHHHHHhhhhCCccccccccch
Q 032799 102 GFWPTLSVFLQRIPILGWLFQQPF 125 (133)
Q Consensus 102 ~F~P~i~~flr~~Pvig~il~~P~ 125 (133)
+.+|..+-.|||.|+++..=+.|-
T Consensus 58 s~~PqfmfhLRRS~flqvfN~SPD 81 (103)
T d2qtva1 58 SLYPQFTYYLRRSQFLSVFNNSPD 81 (103)
T ss_dssp TTHHHHHHHHHTSTTTCCTTCCHH
T ss_pred HhhHHHHHHHhhhhhhhccCCCcc
Confidence 468999999999999976666774
No 10
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.80 E-value=85 Score=17.74 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=8.7
Q ss_pred HhhhhCCcccc
Q 032799 109 VFLQRIPILGW 119 (133)
Q Consensus 109 ~flr~~Pvig~ 119 (133)
.+|+++|-||.
T Consensus 3 d~L~~iPGIg~ 13 (62)
T d2a1ja1 3 DFLLKMPGVNA 13 (62)
T ss_dssp HHHHTSTTCCH
T ss_pred hHHhcCCCCCH
Confidence 46889999884
Done!