Query 032800
Match_columns 133
No_of_seqs 107 out of 330
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:36:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eqt_A ATP-dependent RNA helic 95.4 0.0049 1.7E-07 46.6 1.5 92 12-106 12-106 (145)
2 3ga3_A Interferon-induced heli 95.3 0.012 4.2E-07 43.9 3.3 86 12-102 11-99 (133)
3 3e0o_A Peptide methionine sulf 93.9 0.027 9.2E-07 42.6 2.2 67 12-86 41-107 (144)
4 2qfd_A Probable ATP-dependent 93.7 0.053 1.8E-06 40.9 3.6 87 12-102 26-116 (145)
5 3hcg_A Peptide methionine sulf 93.6 0.043 1.5E-06 41.5 2.9 68 12-86 42-109 (146)
6 2kv1_A Methionine-R-sulfoxide 93.5 0.039 1.3E-06 40.7 2.5 64 12-83 19-82 (124)
7 3lrr_A Probable ATP-dependent 92.9 0.062 2.1E-06 39.3 2.8 87 12-102 4-94 (121)
8 2kao_A Methionine-R-sulfoxide 92.8 0.059 2E-06 39.8 2.5 64 12-83 19-82 (124)
9 3cxk_A Methionine-R-sulfoxide 92.6 0.042 1.4E-06 42.3 1.5 67 12-85 72-138 (164)
10 4a2v_A RIG-I, retinoic acid in 92.3 0.089 3E-06 39.0 3.0 87 12-102 6-97 (131)
11 3mao_A Methionine-R-sulfoxide 91.9 0.052 1.8E-06 39.0 1.3 64 12-83 12-75 (105)
12 2k8d_A Peptide methionine sulf 90.6 0.056 1.9E-06 41.1 0.4 67 12-85 60-126 (151)
13 3e0m_A Peptide methionine sulf 89.1 0.16 5.4E-06 42.5 2.0 67 12-85 208-274 (313)
14 2l1u_A MSRB2, methionine-R-sul 87.5 0.14 4.7E-06 38.6 0.6 86 12-109 36-129 (143)
15 3hcj_A MSRB, peptide methionin 87.5 0.092 3.1E-06 40.0 -0.4 86 12-108 49-134 (154)
16 4gl2_A Interferon-induced heli 71.7 1.3 4.4E-05 37.9 1.3 87 12-103 585-674 (699)
17 2ykg_A Probable ATP-dependent 66.4 5.4 0.00018 34.0 4.0 87 12-102 577-667 (696)
18 4a2w_A RIG-I, retinoic acid in 59.9 1.9 6.4E-05 39.5 0.0 87 12-102 811-902 (936)
19 1x6m_A GFA, glutathione-depend 58.2 17 0.0006 27.3 5.2 36 49-85 79-114 (196)
20 2lvu_A Zinc finger and BTB dom 48.6 5.2 0.00018 18.7 0.0 19 12-30 1-19 (26)
21 3fac_A Putative uncharacterize 38.6 29 0.001 23.6 3.4 32 52-83 50-81 (118)
22 1iz6_A Initiation factor 5A; S 37.7 29 0.001 25.0 3.4 32 34-65 34-65 (138)
23 2m0e_A Zinc finger and BTB dom 37.4 7.6 0.00026 18.1 0.1 18 13-30 2-19 (29)
24 2eif_A IF-5A, protein (eukaryo 35.3 35 0.0012 24.5 3.5 30 35-64 39-68 (136)
25 1rik_A E6APC1 peptide; E6-bind 35.0 8.3 0.00028 18.2 0.1 18 13-30 2-19 (29)
26 2lvr_A Zinc finger and BTB dom 39.5 9 0.00031 18.1 0.0 19 12-30 2-20 (30)
27 2lvt_A Zinc finger and BTB dom 37.7 10 0.00034 18.0 0.0 19 13-31 2-20 (29)
28 3cpf_A Eukaryotic translation 31.4 37 0.0013 24.5 3.0 31 34-64 34-64 (138)
29 1bkb_A Translation initiation 31.1 46 0.0016 23.8 3.5 30 35-64 37-66 (136)
30 2kvh_A Zinc finger and BTB dom 30.8 7 0.00024 18.4 -0.7 18 12-29 2-19 (27)
31 1nyp_A Pinch protein; LIM doma 30.3 15 0.0005 22.1 0.6 14 12-25 30-43 (66)
32 1x61_A Thyroid receptor intera 29.4 20 0.0007 21.7 1.2 13 12-24 32-44 (72)
33 2kvf_A Zinc finger and BTB dom 29.3 7.5 0.00026 18.3 -0.7 18 12-29 2-19 (28)
34 3er0_A Eukaryotic translation 29.1 54 0.0018 24.6 3.7 31 34-64 58-88 (167)
35 2iyb_E Testin, TESS, TES; LIM 29.1 13 0.00045 22.5 0.2 12 13-24 32-43 (65)
36 1klr_A Zinc finger Y-chromosom 29.1 8.7 0.0003 18.0 -0.5 18 13-30 2-19 (30)
37 1fv5_A First zinc finger of U- 27.8 7.8 0.00027 21.6 -0.9 22 10-31 4-26 (36)
38 1paa_A Yeast transcription fac 26.9 8.4 0.00029 18.3 -0.8 17 13-29 2-18 (30)
39 2m0d_A Zinc finger and BTB dom 26.3 9.2 0.00032 17.9 -0.7 18 12-29 2-19 (30)
40 1srk_A Zinc finger protein ZFP 26.2 11 0.00038 18.8 -0.4 19 12-30 6-24 (35)
41 2d8z_A Four and A half LIM dom 25.8 22 0.00074 21.5 0.8 13 12-24 30-42 (70)
42 2m0f_A Zinc finger and BTB dom 25.7 9.7 0.00033 17.7 -0.7 17 13-29 2-18 (29)
43 2elm_A Zinc finger protein 406 25.7 11 0.00037 19.4 -0.5 18 12-29 8-25 (37)
44 3hks_A EIF-5A-2, eukaryotic tr 25.2 63 0.0022 24.3 3.5 31 34-64 56-86 (167)
45 1x4l_A Skeletal muscle LIM-pro 24.5 27 0.00092 21.2 1.1 13 12-24 34-46 (72)
46 2elx_A Zinc finger protein 406 24.3 12 0.0004 18.5 -0.5 19 12-30 6-24 (35)
47 1a7i_A QCRP2 (LIM1); LIM domai 24.0 34 0.0011 21.3 1.5 15 12-26 33-47 (81)
48 2egq_A FHL1 protein; LIM domai 23.9 18 0.0006 22.3 0.1 12 13-24 46-57 (77)
49 2cur_A Skeletal muscle LIM-pro 23.5 25 0.00085 21.2 0.8 12 13-24 31-42 (69)
50 2kvg_A Zinc finger and BTB dom 23.5 8.8 0.0003 18.2 -1.1 18 12-29 2-19 (27)
51 1wyh_A SLIM 2, skeletal muscle 22.8 31 0.0011 20.8 1.1 14 12-25 32-45 (72)
52 1x68_A FHL5 protein; four-and- 22.7 26 0.00088 21.7 0.8 13 12-24 34-46 (76)
53 1x6o_A Eukaryotic initiation f 22.7 60 0.0021 24.5 3.0 32 33-64 57-88 (174)
54 2elq_A Zinc finger protein 406 22.5 14 0.00048 18.5 -0.5 18 12-29 8-25 (36)
55 2ehe_A Four and A half LIM dom 21.8 25 0.00086 21.9 0.6 16 15-30 17-32 (82)
56 2cup_A Skeletal muscle LIM-pro 21.7 39 0.0013 21.7 1.5 13 12-24 32-44 (101)
57 1ard_A Yeast transcription fac 21.1 9.8 0.00034 17.8 -1.2 17 13-29 2-18 (29)
58 2elp_A Zinc finger protein 406 20.7 21 0.00071 18.0 -0.0 18 12-29 8-26 (37)
59 2epc_A Zinc finger protein 32; 20.2 17 0.00059 18.8 -0.4 19 12-30 10-28 (42)
60 4ayb_P DNA-directed RNA polyme 20.2 38 0.0013 21.0 1.1 17 12-28 2-18 (48)
61 2elv_A Zinc finger protein 406 20.0 15 0.00051 18.4 -0.7 18 12-29 8-25 (36)
No 1
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=95.41 E-value=0.0049 Score=46.61 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=60.4
Q ss_pred ceEEecCCCCccCCCCCeeeee--eccCCCceEEecceeeccCCCcc-eeEeeeccEEEeeeeeccCCCceeeEEEEecc
Q 032800 12 RSYRCKFCRTHLALPEDLVSRA--FHCRRGKAYLFNSAVNITVGASE-ERLMLSGMHTVADIFCCSCGQIVGWKYESARE 88 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~--F~G~~G~AyLf~~vvNv~~g~~e-~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A~e 88 (133)
-.+.|++|.+.+++.+||-.-. -.=.-+++ |...+.+..++.. ++. ..+..+-..|.|.+|++.+|-....---
T Consensus 12 vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~-f~d~~~~g~I~C~~Cgq~WG~~m~yk~~ 88 (145)
T 3eqt_A 12 VQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKV-FKDWKPGGVISCRNCGEVWGLQMIYKSV 88 (145)
T ss_dssp CEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSC-CSSEEEEEEEEETTTCCEEEEEEEETTE
T ss_pred eEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcc-cccccCCcEEEchhhChhhHhhEEeccc
Confidence 6699999999999999985431 11001111 1233333222211 122 3455677889999999999998877766
Q ss_pred cCcceecCeEEEEeccee
Q 032800 89 KSQKYKEGKFVLERFIFL 106 (133)
Q Consensus 89 ~sqkYKEGkfILE~~~i~ 106 (133)
+=.-.|.-.|++|...-.
T Consensus 89 ~LP~LkIksFVve~~~g~ 106 (145)
T 3eqt_A 89 KLPVLKVRSMLLETPQGR 106 (145)
T ss_dssp EEEEECGGGEEEEETTEE
T ss_pred cCceEeEEEEEEEcCCCc
Confidence 788889999999875443
No 2
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=95.29 E-value=0.012 Score=43.85 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=59.6
Q ss_pred ceEEecCCCCccCCCCCeeee--eeccCCCceEEecceeeccCCCcc-eeEeeeccEEEeeeeeccCCCceeeEEEEecc
Q 032800 12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGASE-ERLMLSGMHTVADIFCCSCGQIVGWKYESARE 88 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e-~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A~e 88 (133)
-.+.|++|.+.+++.+||-.- +-.=.-+++ |...+.+. +++. ++. ..+..+-..|.|. |++.+|-....---
T Consensus 11 vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~-~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~yk~~ 85 (133)
T 3ga3_A 11 ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKALQKK-CADYQINGEIICK-CGQAWGTMMVHKGL 85 (133)
T ss_dssp EEEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEE-CCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEETTE
T ss_pred EEEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEec-CCCCccch-hccccCCceEEEe-cCChhhhhEEeccc
Confidence 458999999999999997543 111111222 23444444 3332 233 4667888999999 99999998877666
Q ss_pred cCcceecCeEEEEe
Q 032800 89 KSQKYKEGKFVLER 102 (133)
Q Consensus 89 ~sqkYKEGkfILE~ 102 (133)
+=.-.|.-.|+||.
T Consensus 86 ~LP~LkIksFVve~ 99 (133)
T 3ga3_A 86 DLPCLKIRNFVVVF 99 (133)
T ss_dssp EEEEECGGGEEEEE
T ss_pred cCceEEEEEEEEEc
Confidence 67888999999875
No 3
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=93.87 E-value=0.027 Score=42.56 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=42.9
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEe
Q 032800 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESA 86 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A 86 (133)
-+|.|+.|.++|=++++ -|....|=--.++.+-+ .+...+|++ -|+.. ..|.|..|+.+||--....
T Consensus 41 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DG 107 (144)
T 3e0o_A 41 GLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFNDG 107 (144)
T ss_dssp EEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEESCC
T ss_pred EEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccCCC
Confidence 78999999999877654 35444554333443333 333444443 24433 4799999999999877543
No 4
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=93.71 E-value=0.053 Score=40.90 Aligned_cols=87 Identities=20% Similarity=0.314 Sum_probs=56.6
Q ss_pred ceEEecCCCCccCCCCCeeee--eeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeec--cCCCceeeEEEEec
Q 032800 12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~LGWKY~~A~ 87 (133)
-.+.|++|.+.+++.+||-.- +-+=.-+++ |...+.+. ..+-++. .-+..+-..|+|. +|++.+|-....--
T Consensus 26 v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~--F~~~y~v~-~~~~~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~ 101 (145)
T 2qfd_A 26 KKLLCRKCKALACYTADVRVIEECHYTVLGDA--FKECFVSR-PHPKPKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT 101 (145)
T ss_dssp CEEEETTTCCEEEEGGGEEEETTTEEEECSTT--GGGTEEEE-ECSSCCC-CSSEEEEEEEEECSTTTCCEEEEEEEETT
T ss_pred eEEEccCCCeeEEcccceeEecCCcEEecCcC--ceeeEEEc-CCcccch-hhceeCCceEEeCCcccCcchhceEEEcc
Confidence 569999999999999998332 110000111 11233333 1111122 4455677999999 99999999887666
Q ss_pred ccCcceecCeEEEEe
Q 032800 88 EKSQKYKEGKFVLER 102 (133)
Q Consensus 88 e~sqkYKEGkfILE~ 102 (133)
-+-.-.|.-.|+||.
T Consensus 102 ~~lP~LkIksFVv~~ 116 (145)
T 2qfd_A 102 FEIPVIKIESFVVED 116 (145)
T ss_dssp EEEEEECGGGEEEEC
T ss_pred ccCceEEEEEEEEEe
Confidence 667888999999986
No 5
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=93.59 E-value=0.043 Score=41.50 Aligned_cols=68 Identities=10% Similarity=0.103 Sum_probs=42.3
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEe
Q 032800 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESA 86 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A 86 (133)
-+|.|+.|.++|=++++ -|....|=--.++.+-.-.+...+|+++ |+.. ..|.|+.|+.+||=-....
T Consensus 42 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s~--gm~R-tEV~C~~Cg~HLGHVF~DG 109 (146)
T 3hcg_A 42 GIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFSY--NMRR-TEVRSHAADSHLGHVFPDG 109 (146)
T ss_dssp EEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSGGGEEEEEEEET--TEEE-EEEEETTTCCEEEEEESCS
T ss_pred EEEEecCCCcccccCcc----cccCCCCChhhccccCCCceEEeecCCC--CcEE-EEEEeCCCCCccCceeCCC
Confidence 78999999999876653 3555555433333332222223344432 4332 5889999999999877543
No 6
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=93.47 E-value=0.039 Score=40.74 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=38.2
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEE
Q 032800 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY 83 (133)
-+|.|+.|.++|=++++= |....|=--.++.+-.-.+-...++ .|+. ...|.|++|+.+||=-.
T Consensus 19 G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 19 GVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp EEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred EEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence 689999999999887653 5444453222222211111122222 2222 35799999999999765
No 7
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=92.87 E-value=0.062 Score=39.29 Aligned_cols=87 Identities=18% Similarity=0.301 Sum_probs=58.2
Q ss_pred ceEEecCCCCccCCCCCeeee--eeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeec--cCCCceeeEEEEec
Q 032800 12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~LGWKY~~A~ 87 (133)
..+.|++|.+.+++.+||-.- +-+=.-+++| ...+.+..-+. ++. .-+.++-..|.|. +|++.+|-....--
T Consensus 4 ~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~ 79 (121)
T 3lrr_A 4 KKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT 79 (121)
T ss_dssp EEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEETT
T ss_pred EEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEecc
Confidence 468999999999999997433 1110111111 23333322222 333 3466788999999 99999999887766
Q ss_pred ccCcceecCeEEEEe
Q 032800 88 EKSQKYKEGKFVLER 102 (133)
Q Consensus 88 e~sqkYKEGkfILE~ 102 (133)
-+=.-.|.-.|+||.
T Consensus 80 ~~LP~LkI~sfvve~ 94 (121)
T 3lrr_A 80 FEIPVIKIESFVVED 94 (121)
T ss_dssp EEEEEECGGGEEEEE
T ss_pred ccCceEEEEEEEEEe
Confidence 667888999999876
No 8
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=92.77 E-value=0.059 Score=39.80 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=38.0
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEE
Q 032800 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY 83 (133)
-+|.|+.|.++|=++++ -|....|=--.++.+-.-.+...+|.. + +.-..|.|++|+.+||=-.
T Consensus 19 GiY~C~~Cg~pLF~S~~----KFdSG~GWPSF~~pi~~~~v~~~~D~~---~-~~RtEV~C~~Cg~HLGHVF 82 (124)
T 2kao_A 19 GVYVCAKCSYELFSSHS----KYAHSSPWPAFTETIHPDSVTKCPEKN---R-PEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp CEEEESSSCCCCCCTTT----SCCCCCSSCCBSCCCCCSSCEEEECSS---C-TTCEEEECTTTTCCCEEEC
T ss_pred EEEEeCCCCCccccCcc----cccCCCCChhhCccCCccceEEEecCC---C-CCEEEEEeCCCCCcCCccC
Confidence 78999999999988774 244444432223322111111122211 1 1236899999999999766
No 9
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=92.57 E-value=0.042 Score=42.33 Aligned_cols=67 Identities=22% Similarity=0.443 Sum_probs=42.1
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEE
Q 032800 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES 85 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~ 85 (133)
-+|.|+.|.++|=++++ -|....|=.-.++-+-+-.+...+|+++ |+. -..|.|..|+.+||=-...
T Consensus 72 GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D 138 (164)
T 3cxk_A 72 GIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYTH--GMT-RVEVRCNQCGAHLGHVFED 138 (164)
T ss_dssp EEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECGG--GCC-EEEEEETTTCCEEEEEESC
T ss_pred eEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCCC--CcE-EEEEEeCCCCCccCcccCC
Confidence 78999999999876653 3554555433344332222333444332 442 4579999999999977643
No 10
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=92.28 E-value=0.089 Score=39.00 Aligned_cols=87 Identities=17% Similarity=0.297 Sum_probs=55.3
Q ss_pred ceEEecCCCCccCCCCCeeee--eeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeec--cCCCceeeEEEEec
Q 032800 12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~LGWKY~~A~ 87 (133)
..+.|++|.+.+++.+||-.- +-+=.-+++ |...+.+..-+. ++. .-+.++-..|.|. +|++.+|-....--
T Consensus 6 ~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~ 81 (131)
T 4a2v_A 6 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEA--FKERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT 81 (131)
T ss_dssp CEEEETTTCCEEEEGGGEEEETTTEEEECSSG--GGGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEETT
T ss_pred eEEEccCCCeeEEeccceEEeecceEEeeChh--heeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeecC
Confidence 568999999999999997433 111011111 123333311111 222 2456678899999 99999998876655
Q ss_pred cc-CcceecCeEEEEe
Q 032800 88 EK-SQKYKEGKFVLER 102 (133)
Q Consensus 88 e~-sqkYKEGkfILE~ 102 (133)
-+ =.-.|.-.|+||.
T Consensus 82 ~~~LP~LkIksFVve~ 97 (131)
T 4a2v_A 82 FDNLPVIKIKSFVMES 97 (131)
T ss_dssp EEEEEEECGGGEEECC
T ss_pred cccCceEeEEEEEEEe
Confidence 44 6678888899876
No 11
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=91.92 E-value=0.052 Score=39.04 Aligned_cols=64 Identities=16% Similarity=0.295 Sum_probs=38.2
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEE
Q 032800 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY 83 (133)
-+|.|+.|.++|=++++ -|....|=--.++.+-.-.+...+|. .++ .-..|.|..|+.+||--.
T Consensus 12 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF 75 (105)
T 3mao_A 12 GVYVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF 75 (105)
T ss_dssp EEEEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence 78999999999866553 35555554333333211111112221 121 236899999999999776
No 12
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.60 E-value=0.056 Score=41.08 Aligned_cols=67 Identities=24% Similarity=0.557 Sum_probs=42.1
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEE
Q 032800 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES 85 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~ 85 (133)
-+|.|+.|.++|=++++ -|....|=--.++.+-.-.+...+|+++ |+.. ..|.|..|+.+||--...
T Consensus 60 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s~--gm~R-tEV~C~~Cg~HLGHVF~D 126 (151)
T 2k8d_A 60 GIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRSL--GMVR-CEVLCARCDAHLGHVFDD 126 (151)
T ss_dssp SEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBTT--SSCE-EEEEETTEEEEEEEEEEC
T ss_pred EEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCCC--CceE-EEEEeCCCCCcCCcccCC
Confidence 78999999999876653 3655556433344332222333344332 3332 579999999999987754
No 13
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=89.06 E-value=0.16 Score=42.53 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=41.4
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEE
Q 032800 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES 85 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~ 85 (133)
-+|.|+.|+++|=++++ -|....|=--.++.+-.-.+...+|+++ |+.. ..|.|..|+.+||=-...
T Consensus 208 G~Y~c~~cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~D~s~--gm~R-tEv~c~~c~~HLGHVF~D 274 (313)
T 3e0m_A 208 GIYVDITTGEPLFFAKD----KFASGCGWPSFSRPLSKELIHYYKDLSH--GMER-IEVRSRSGSAHLGHVFTD 274 (313)
T ss_dssp EEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSGGGEEEEEECCT--TCCE-EEEEESSSCCEEEEEESC
T ss_pred eEEEecCCCccccCCCc----cccCCCCCcccCcccCCCceEEeecCCC--CcEE-EEEECCCCCCccCcccCC
Confidence 78999999999866543 3555555433333332212222344332 4432 589999999999977644
No 14
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=87.55 E-value=0.14 Score=38.62 Aligned_cols=86 Identities=15% Similarity=0.304 Sum_probs=48.9
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeecc--------CCCcceeEeeeccEEEeeeeeccCCCceeeEE
Q 032800 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNIT--------VGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~--------~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY 83 (133)
-+|.|+.|+++|=++++ -|....|=.- |.+.+++. +...+|++ -|+. =..|.|..|+.+||=-.
T Consensus 36 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF 107 (143)
T 2l1u_A 36 GMYHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDTS--LGCP-RMEVVCKQCEAHLGHVF 107 (143)
T ss_dssp EEEEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEECT--TSSC-EEEEEESSSCCCCEEEE
T ss_pred eEEEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeeccc--CCce-EEEEEECCCCCcCCccc
Confidence 78999999999876653 3544444322 23333211 11122321 1333 25799999999999877
Q ss_pred EEecccCcceecCeEEEEecceeecc
Q 032800 84 ESAREKSQKYKEGKFVLERFIFLSHI 109 (133)
Q Consensus 84 ~~A~e~sqkYKEGkfILE~~~i~~~~ 109 (133)
.....+ +==+|-|.-+-|.-..
T Consensus 108 ~DGP~p----tg~RyCINS~sL~F~p 129 (143)
T 2l1u_A 108 PDGPKP----TGQRFCINSVALKFKP 129 (143)
T ss_dssp CCSSCG----GGCEEEECCTTEEEEE
T ss_pred CCCCCC----CCCEEEeeeeEEeccc
Confidence 543211 1126666666665543
No 15
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=87.49 E-value=0.092 Score=40.04 Aligned_cols=86 Identities=17% Similarity=0.347 Sum_probs=46.0
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEecccCc
Q 032800 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQ 91 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A~e~sq 91 (133)
-+|.|+.|.++|=++++ -|....|=--.++.+-.-.+...+|.+ -|+.. ..|.|..|+.+||=-......++
T Consensus 49 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DGP~pt- 120 (154)
T 3hcj_A 49 GVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMIR-TEIVCARCDSHLGHVFPDGPPPT- 120 (154)
T ss_dssp EEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTSC-EEEEETTTCCEEEEEESCSCTTT-
T ss_pred EEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCceE-EEEEeCCCCCccCCccCCCCCCC-
Confidence 78999999999876653 344444432222222111111222222 13332 57999999999997765432221
Q ss_pred ceecCeEEEEecceeec
Q 032800 92 KYKEGKFVLERFIFLSH 108 (133)
Q Consensus 92 kYKEGkfILE~~~i~~~ 108 (133)
-=+|-|.-+-|.-.
T Consensus 121 ---g~RyCiNS~sL~F~ 134 (154)
T 3hcj_A 121 ---GERHCLNSVSLAFT 134 (154)
T ss_dssp ---TCEEEECGGGEEEE
T ss_pred ---CCEeeeceeeEEee
Confidence 12455555555443
No 16
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=71.73 E-value=1.3 Score=37.93 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=47.2
Q ss_pred ceEEecCCCCccCCCCCeee--eeeccCCCceEEecceeeccCCCc-ceeEeeeccEEEeeeeeccCCCceeeEEEEecc
Q 032800 12 RSYRCKFCRTHLALPEDLVS--RAFHCRRGKAYLFNSAVNITVGAS-EERLMLSGMHTVADIFCCSCGQIVGWKYESARE 88 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lIS--k~F~G~~G~AyLf~~vvNv~~g~~-e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A~e 88 (133)
....|.+|.+.++..++|-. .+-+=.-.++ |.....+. .+. -++ ...+......|.|. |++.+|-.+..---
T Consensus 585 ~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~-~~~~~~~~~~~~c~-~~~~~g~~~~~~~~ 659 (699)
T 4gl2_A 585 ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKTLQK-KCADYQINGEIICK-CGQAWGTMMVHKGL 659 (699)
T ss_dssp EEEEESSSCCEEEEGGGCEEETTTEEECCCHH--HHHHCEEC-----------------CEEECS-SSCEEEEECCCC--
T ss_pred eEEECCCCCcEEEehhheeeeccCceEeeCcc--hhhheeec-CCCccch-hhhccccCCcEEee-cCchhhHHeeEccc
Confidence 45789999999999998743 1100011111 12333333 222 122 24566778899999 99999988766555
Q ss_pred cCcceecCeEEEEec
Q 032800 89 KSQKYKEGKFVLERF 103 (133)
Q Consensus 89 ~sqkYKEGkfILE~~ 103 (133)
+=.-.|.=.|++|..
T Consensus 660 ~~p~~~~~~~~~~~~ 674 (699)
T 4gl2_A 660 DLPCLKIRNFVVVFK 674 (699)
T ss_dssp -CEEECGGGEEEEET
T ss_pred ccceeEEEEEEEEcC
Confidence 577778888888763
No 17
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=66.44 E-value=5.4 Score=34.03 Aligned_cols=87 Identities=20% Similarity=0.345 Sum_probs=54.8
Q ss_pred ceEEecCCCCccCCCCCe--eeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeec--cCCCceeeEEEEec
Q 032800 12 RSYRCKFCRTHLALPEDL--VSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~l--ISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~LGWKY~~A~ 87 (133)
....|.+|...++..+++ +..+.+=.-.++ |.+-+.+.. ++.++. .........|+|. +|++.+|-.+..-.
T Consensus 577 ~~~~c~~c~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~-~~~~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~ 652 (696)
T 2ykg_A 577 KKLLCRKCKALACYTADVRVIEDCHYTVLGDA--FKECFVSRP-HPKPKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT 652 (696)
T ss_dssp EEEEESSSCCEEEEGGGEEEETTTEEEECSTT--GGGTEEEEE-EEEEEE-CSSCEEEEEEEESSTTTCCEEEEEEEETT
T ss_pred hhhhccCCCceeeecchhhhhcCCCeeecCHH--hHhHeeecc-CCcccc-ccccccCCceEeCCCCCCccccceEEEcc
Confidence 457899999999999885 322222222223 222222211 111222 3445667889999 99999999986555
Q ss_pred ccCcceecCeEEEEe
Q 032800 88 EKSQKYKEGKFVLER 102 (133)
Q Consensus 88 e~sqkYKEGkfILE~ 102 (133)
-+=..+|...|++|.
T Consensus 653 ~~lp~~~~~~~~~~~ 667 (696)
T 2ykg_A 653 FEIPVIKIESFVVED 667 (696)
T ss_dssp EEEEEECGGGEEEEE
T ss_pred eecceeeeeeEEEEe
Confidence 567778899999984
No 18
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=59.94 E-value=1.9 Score=39.51 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=0.0
Q ss_pred ceEEecCCCCccCCCCCeeee--eeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeec--cCCCceeeEEEEec
Q 032800 12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~LGWKY~~A~ 87 (133)
..+.|.+|+..++..+||-.- +-+=.-+++|- ..+++..-+. ++. .-..+....|+|. +|+..+|-....--
T Consensus 811 ~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~f~--~~~~~~~~~~-~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~ 886 (936)
T 4a2w_A 811 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAFK--ERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT 886 (936)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEcCCCCceeechhhheeecCCCeEecChhhh--hheeccCCCC-cch-hhcccCCceEEeCccccChHhhhheEecc
Confidence 468999999999999997332 21112223332 2223311111 222 3445667899999 99999998774433
Q ss_pred cc-CcceecCeEEEEe
Q 032800 88 EK-SQKYKEGKFVLER 102 (133)
Q Consensus 88 e~-sqkYKEGkfILE~ 102 (133)
-+ =.-.|.-.|++|.
T Consensus 887 ~~~~p~~~~~~~~~~~ 902 (936)
T 4a2w_A 887 FDNLPVIKIKSFVMES 902 (936)
T ss_dssp ----------------
T ss_pred cccCceeeeeeEEEEe
Confidence 22 4456677788776
No 19
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=58.16 E-value=17 Score=27.27 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=22.2
Q ss_pred eccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEE
Q 032800 49 NITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES 85 (133)
Q Consensus 49 Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~ 85 (133)
.+..|+..-+...+|. .+.--+|..|++.|-|..+.
T Consensus 79 ~~~~G~~~l~~y~ss~-~~~r~FC~~CGs~l~~~~~~ 114 (196)
T 1x6m_A 79 EVLEGAEKLEIVNAEA-PIQRHRCRDCGVHMYGRIEN 114 (196)
T ss_dssp EEEECGGGEEESCTTS-SEEEEEETTTCCEEEEEECC
T ss_pred EEecCCCceEEEeCCC-CeeeEECCCCCCcCCccccc
Confidence 3334554333333333 36777999999999887643
No 20
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=48.59 E-value=5.2 Score=18.73 Aligned_cols=19 Identities=21% Similarity=0.627 Sum_probs=14.7
Q ss_pred ceEEecCCCCccCCCCCee
Q 032800 12 RSYRCKFCRTHLALPEDLV 30 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (133)
+.|.|..|+..+...+.|.
T Consensus 1 kp~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 1 KPYVCERCGKRFVQSSQLA 19 (26)
Confidence 3588999998887777664
No 21
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=38.58 E-value=29 Score=23.55 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=20.4
Q ss_pred CCCcceeEeeeccEEEeeeeeccCCCceeeEE
Q 032800 52 VGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (133)
Q Consensus 52 ~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY 83 (133)
.|+..-+....+...+.--+|..|++.|-|..
T Consensus 50 ~g~~~l~~y~~s~~~~~r~FC~~CGs~l~~~~ 81 (118)
T 3fac_A 50 RGAENLTLYQFGTRTAKHWFCRTCGIYTHHQR 81 (118)
T ss_dssp ECGGGEEEECCTTSCSEEEEETTTCCEEEEEC
T ss_pred CChhHceEEecCCCCEeeEECCCCCccccCcc
Confidence 35443333433333456789999999998864
No 22
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=37.72 E-value=29 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=27.4
Q ss_pred eccCCCceEEecceeeccCCCcceeEeeeccE
Q 032800 34 FHCRRGKAYLFNSAVNITVGASEERLMLSGMH 65 (133)
Q Consensus 34 F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H 65 (133)
=.|+||.|+.=-++.|+..|...++.+.+|--
T Consensus 34 KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ 65 (138)
T 1iz6_A 34 SPGKHGSAKARIEAVGIFDGKVRSIVKPTSAE 65 (138)
T ss_dssp CCCTTSCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred cCCCCCceEEEEEEEECCCCCEEEEEecCCCE
Confidence 36999999988899999999999988877743
No 23
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=37.44 E-value=7.6 Score=18.07 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=14.0
Q ss_pred eEEecCCCCccCCCCCee
Q 032800 13 SYRCKFCRTHLALPEDLV 30 (133)
Q Consensus 13 ~y~C~~C~thLa~~~~lI 30 (133)
.|.|..|...+...+.|.
T Consensus 2 ~~~C~~C~~~f~~~~~l~ 19 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLK 19 (29)
T ss_dssp CCCCSSCCCCCCTTTHHH
T ss_pred CCcCCCCCcccCCHHHHH
Confidence 588999998887776654
No 24
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=35.25 E-value=35 Score=24.51 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=25.9
Q ss_pred ccCCCceEEecceeeccCCCcceeEeeecc
Q 032800 35 HCRRGKAYLFNSAVNITVGASEERLMLSGM 64 (133)
Q Consensus 35 ~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 64 (133)
.|+||.|+.=-++.|+..|...++.+.+|-
T Consensus 39 pGKhG~A~vr~k~knl~tG~~~e~tf~s~~ 68 (136)
T 2eif_A 39 PGKHGGAKARVVGIGIFEKVKKEFVAPTSS 68 (136)
T ss_dssp CCSSSCCEEEEEEEESSSCCEEEEEEETTS
T ss_pred CCCCCceEEEEEEEEcCCCCeEEEEecCCC
Confidence 599999998779999999999888877764
No 25
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=35.05 E-value=8.3 Score=18.15 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=13.4
Q ss_pred eEEecCCCCccCCCCCee
Q 032800 13 SYRCKFCRTHLALPEDLV 30 (133)
Q Consensus 13 ~y~C~~C~thLa~~~~lI 30 (133)
.|.|..|...+...+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLT 19 (29)
T ss_dssp CEECSSSSCEESCSHHHH
T ss_pred CccCCCCCchhCCHHHHH
Confidence 589999988777665543
No 26
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=39.49 E-value=9 Score=18.10 Aligned_cols=19 Identities=32% Similarity=0.730 Sum_probs=14.3
Q ss_pred ceEEecCCCCccCCCCCee
Q 032800 12 RSYRCKFCRTHLALPEDLV 30 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (133)
+.|.|..|...+...+.|.
T Consensus 2 k~~~C~~C~k~f~~~~~l~ 20 (30)
T 2lvr_A 2 KPYVCIHCQRQFADPGALQ 20 (30)
Confidence 3688999988877766654
No 27
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.75 E-value=10 Score=17.99 Aligned_cols=19 Identities=16% Similarity=0.576 Sum_probs=14.4
Q ss_pred eEEecCCCCccCCCCCeee
Q 032800 13 SYRCKFCRTHLALPEDLVS 31 (133)
Q Consensus 13 ~y~C~~C~thLa~~~~lIS 31 (133)
.|.|..|..-+...+.|..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~ 20 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLIA 20 (29)
Confidence 5889999888777766643
No 28
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=31.36 E-value=37 Score=24.45 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=22.7
Q ss_pred eccCCCceEEecceeeccCCCcceeEeeecc
Q 032800 34 FHCRRGKAYLFNSAVNITVGASEERLMLSGM 64 (133)
Q Consensus 34 F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 64 (133)
=.|++|.|+.--++.|+..|...++.+.+|-
T Consensus 34 KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~ 64 (138)
T 3cpf_A 34 KTGKHGHAKVHLVGIDIFTGKKYEDICPSTH 64 (138)
T ss_dssp CC----CCEEEEEEEETTTCCEEEEEEETTS
T ss_pred cCCCCccEEEEEEEEECCCCCEEEEEeCCCC
Confidence 3699999988889999999999888877664
No 29
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=31.08 E-value=46 Score=23.76 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=26.7
Q ss_pred ccCCCceEEecceeeccCCCcceeEeeecc
Q 032800 35 HCRRGKAYLFNSAVNITVGASEERLMLSGM 64 (133)
Q Consensus 35 ~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 64 (133)
.|++|.|+.=-++.|+..|...++.+.+|-
T Consensus 37 pGKgG~A~vr~k~knl~tG~~~e~tf~s~~ 66 (136)
T 1bkb_A 37 TGKHGSAKARIVAVGVFDGGKRTLSLPVDA 66 (136)
T ss_dssp CSTTSCCEEEEEEEETTTCCEEEEEEETTS
T ss_pred CCCCCceEEEEEEEECCCCCeEEEEEcCCC
Confidence 699999988889999999999988887775
No 30
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.85 E-value=7 Score=18.41 Aligned_cols=18 Identities=11% Similarity=0.464 Sum_probs=12.9
Q ss_pred ceEEecCCCCccCCCCCe
Q 032800 12 RSYRCKFCRTHLALPEDL 29 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (133)
+.|.|..|+..+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (27)
T 2kvh_A 2 KPFSCSLCPQRSRDFSAM 19 (27)
T ss_dssp CCEECSSSSCEESSHHHH
T ss_pred cCccCCCcChhhCCHHHH
Confidence 468999998877665443
No 31
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=30.31 E-value=15 Score=22.09 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=10.5
Q ss_pred ceEEecCCCCccCC
Q 032800 12 RSYRCKFCRTHLAL 25 (133)
Q Consensus 12 ~~y~C~~C~thLa~ 25 (133)
.-|.|..|+.+|..
T Consensus 30 ~CF~C~~C~~~L~~ 43 (66)
T 1nyp_A 30 EHFVCAKCEKPFLG 43 (66)
T ss_dssp TTCBCTTTCCBCSS
T ss_pred CcCEECCCCCCCCC
Confidence 34788888888864
No 32
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.35 E-value=20 Score=21.72 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=9.7
Q ss_pred ceEEecCCCCccC
Q 032800 12 RSYRCKFCRTHLA 24 (133)
Q Consensus 12 ~~y~C~~C~thLa 24 (133)
.-|.|..|+.+|.
T Consensus 32 ~CF~C~~C~~~L~ 44 (72)
T 1x61_A 32 GCFVCSTCRAQLR 44 (72)
T ss_dssp TTCBCSSSCCBCT
T ss_pred cCCcccccCCcCC
Confidence 4478888888884
No 33
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.33 E-value=7.5 Score=18.32 Aligned_cols=18 Identities=28% Similarity=0.855 Sum_probs=13.1
Q ss_pred ceEEecCCCCccCCCCCe
Q 032800 12 RSYRCKFCRTHLALPEDL 29 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (133)
+.|.|..|...+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (28)
T 2kvf_A 2 RPYSCSVCGKRFSLKHQM 19 (28)
T ss_dssp CSEECSSSCCEESCHHHH
T ss_pred cCccCCCCCcccCCHHHH
Confidence 468999998877665544
No 34
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=29.10 E-value=54 Score=24.64 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=26.3
Q ss_pred eccCCCceEEecceeeccCCCcceeEeeecc
Q 032800 34 FHCRRGKAYLFNSAVNITVGASEERLMLSGM 64 (133)
Q Consensus 34 F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 64 (133)
=.|++|.|+.=-++.|+..|...++.+.+|-
T Consensus 58 KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~ 88 (167)
T 3er0_A 58 KTGKHGHAKVHLVAIDIFTGKKLEDLSPSTH 88 (167)
T ss_dssp CCSSSSCCEEEEEEEESSSCCCEEEEEESSS
T ss_pred CCCCcCceEEEEEEEEcCCCCEEEEEEcCCC
Confidence 3689999998889999999999888876653
No 35
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=29.09 E-value=13 Score=22.50 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=9.0
Q ss_pred eEEecCCCCccC
Q 032800 13 SYRCKFCRTHLA 24 (133)
Q Consensus 13 ~y~C~~C~thLa 24 (133)
-|.|..|+.+|.
T Consensus 32 CF~C~~C~~~L~ 43 (65)
T 2iyb_E 32 CFLCSCCSKCLI 43 (65)
T ss_dssp TSBCTTTCCBCT
T ss_pred CEECCCCCCcCC
Confidence 367888888885
No 36
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=29.05 E-value=8.7 Score=18.00 Aligned_cols=18 Identities=28% Similarity=0.752 Sum_probs=13.8
Q ss_pred eEEecCCCCccCCCCCee
Q 032800 13 SYRCKFCRTHLALPEDLV 30 (133)
Q Consensus 13 ~y~C~~C~thLa~~~~lI 30 (133)
.|.|..|...+...+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLK 19 (30)
T ss_dssp CCCCSSSSCCCSCSHHHH
T ss_pred CccCCCCCCccCCHHHHH
Confidence 578999998887766654
No 37
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=27.83 E-value=7.8 Score=21.60 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=17.2
Q ss_pred CC-ceEEecCCCCccCCCCCeee
Q 032800 10 DG-RSYRCKFCRTHLALPEDLVS 31 (133)
Q Consensus 10 ~g-~~y~C~~C~thLa~~~~lIS 31 (133)
.| +.|.|..|..-++..+.|..
T Consensus 4 ~gekp~~C~~CgK~F~~~s~L~~ 26 (36)
T 1fv5_A 4 LKPARFMCLPCGIAFSSPSTLEA 26 (36)
T ss_dssp SSCCCCEETTTTEECSCHHHHHH
T ss_pred CCccCeECCCCCCccCCHhHccC
Confidence 45 88999999998887766643
No 38
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=26.92 E-value=8.4 Score=18.29 Aligned_cols=17 Identities=24% Similarity=0.661 Sum_probs=12.7
Q ss_pred eEEecCCCCccCCCCCe
Q 032800 13 SYRCKFCRTHLALPEDL 29 (133)
Q Consensus 13 ~y~C~~C~thLa~~~~l 29 (133)
.|.|..|...+...+.|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLL 18 (30)
T ss_dssp CSBCTTTCCBCSSSHHH
T ss_pred CcCCcccCcccCChHHH
Confidence 57899998877766554
No 39
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.33 E-value=9.2 Score=17.90 Aligned_cols=18 Identities=22% Similarity=0.826 Sum_probs=12.9
Q ss_pred ceEEecCCCCccCCCCCe
Q 032800 12 RSYRCKFCRTHLALPEDL 29 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (133)
+.|.|..|...+...+.|
T Consensus 2 k~~~C~~C~~~f~~~~~l 19 (30)
T 2m0d_A 2 KPYQCDYCGRSFSDPTSK 19 (30)
T ss_dssp CCEECTTTCCEESCHHHH
T ss_pred cCccCCCCCcccCCHHHH
Confidence 468999998877655444
No 40
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=26.18 E-value=11 Score=18.78 Aligned_cols=19 Identities=16% Similarity=0.613 Sum_probs=14.5
Q ss_pred ceEEecCCCCccCCCCCee
Q 032800 12 RSYRCKFCRTHLALPEDLV 30 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (133)
+.|.|..|..-+...+.|.
T Consensus 6 k~~~C~~C~k~f~~~~~l~ 24 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANCA 24 (35)
T ss_dssp SCEECSSSCCEESSHHHHH
T ss_pred cCeeCCCCCcccCCHHHHH
Confidence 7899999988777665543
No 41
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.79 E-value=22 Score=21.48 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=9.5
Q ss_pred ceEEecCCCCccC
Q 032800 12 RSYRCKFCRTHLA 24 (133)
Q Consensus 12 ~~y~C~~C~thLa 24 (133)
.-|.|..|+.+|.
T Consensus 30 ~CF~C~~C~~~L~ 42 (70)
T 2d8z_A 30 ECFVCTACRKQLS 42 (70)
T ss_dssp TTSBCSSSCCBCT
T ss_pred CCCccCCCCCcCC
Confidence 3477888888875
No 42
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.74 E-value=9.7 Score=17.73 Aligned_cols=17 Identities=18% Similarity=0.634 Sum_probs=12.2
Q ss_pred eEEecCCCCccCCCCCe
Q 032800 13 SYRCKFCRTHLALPEDL 29 (133)
Q Consensus 13 ~y~C~~C~thLa~~~~l 29 (133)
.|.|..|..-+...+.|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNL 18 (29)
T ss_dssp CEECTTTSCEESCHHHH
T ss_pred CccCCCCCCccCChhHH
Confidence 58899998776655444
No 43
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.68 E-value=11 Score=19.43 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=13.6
Q ss_pred ceEEecCCCCccCCCCCe
Q 032800 12 RSYRCKFCRTHLALPEDL 29 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (133)
+.|.|..|..-++..+.|
T Consensus 8 k~~~C~~C~k~f~~~~~L 25 (37)
T 2elm_A 8 HLYYCSQCHYSSITKNCL 25 (37)
T ss_dssp CEEECSSSSCEEECHHHH
T ss_pred cCeECCCCCcccCCHHHH
Confidence 789999998776655443
No 44
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=25.21 E-value=63 Score=24.27 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=26.7
Q ss_pred eccCCCceEEecceeeccCCCcceeEeeecc
Q 032800 34 FHCRRGKAYLFNSAVNITVGASEERLMLSGM 64 (133)
Q Consensus 34 F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 64 (133)
=.|++|.|+.=-++.|+..|...++...+|-
T Consensus 56 KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~ 86 (167)
T 3hks_A 56 KTGKHGHAKCHFVAIDIFTAKKLEDIVPSSH 86 (167)
T ss_dssp CSSTTCCCEEEEEEEETTTCCEEEEEEETTS
T ss_pred CCCCCCceEEEEEEEEcCCCCEEEEEEcCCC
Confidence 3689999998889999999999988887774
No 45
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.52 E-value=27 Score=21.20 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=10.0
Q ss_pred ceEEecCCCCccC
Q 032800 12 RSYRCKFCRTHLA 24 (133)
Q Consensus 12 ~~y~C~~C~thLa 24 (133)
.-|.|..|+.+|.
T Consensus 34 ~CF~C~~C~~~L~ 46 (72)
T 1x4l_A 34 DCFNCKKCSLSLV 46 (72)
T ss_dssp TTCBCSSSCCBCT
T ss_pred ccCEeccCCCcCC
Confidence 4478888888886
No 46
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.33 E-value=12 Score=18.50 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=14.4
Q ss_pred ceEEecCCCCccCCCCCee
Q 032800 12 RSYRCKFCRTHLALPEDLV 30 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (133)
+.|.|..|..-+...+.|.
T Consensus 6 k~~~C~~C~k~f~~~~~L~ 24 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIRLR 24 (35)
T ss_dssp CSEECSSSCCEESSHHHHH
T ss_pred CCeECCCCcchhCCHHHHH
Confidence 6799999988777655543
No 47
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.97 E-value=34 Score=21.31 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=10.3
Q ss_pred ceEEecCCCCccCCC
Q 032800 12 RSYRCKFCRTHLALP 26 (133)
Q Consensus 12 ~~y~C~~C~thLa~~ 26 (133)
.-|.|..|+.+|...
T Consensus 33 ~CF~C~~C~~~L~~~ 47 (81)
T 1a7i_A 33 CCFLCMVCRKNLDST 47 (81)
T ss_dssp SSEECSSSCCEECSS
T ss_pred ccCccCCCCCCCCCC
Confidence 347788888777654
No 48
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=23.85 E-value=18 Score=22.33 Aligned_cols=12 Identities=42% Similarity=1.002 Sum_probs=7.3
Q ss_pred eEEecCCCCccC
Q 032800 13 SYRCKFCRTHLA 24 (133)
Q Consensus 13 ~y~C~~C~thLa 24 (133)
-|.|..|+.+|+
T Consensus 46 CF~C~~C~~~L~ 57 (77)
T 2egq_A 46 CFHCKKCSVNLA 57 (77)
T ss_dssp TCBCSSSCCBCT
T ss_pred cCEehhcCCCCC
Confidence 356666666665
No 49
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.54 E-value=25 Score=21.18 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=8.3
Q ss_pred eEEecCCCCccC
Q 032800 13 SYRCKFCRTHLA 24 (133)
Q Consensus 13 ~y~C~~C~thLa 24 (133)
-|.|..|+.+|.
T Consensus 31 CF~C~~C~~~L~ 42 (69)
T 2cur_A 31 CFVCVTCSKKLA 42 (69)
T ss_dssp TTBCTTTCCBCT
T ss_pred cCEECCCCCCCC
Confidence 467777777775
No 50
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.50 E-value=8.8 Score=18.23 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=12.4
Q ss_pred ceEEecCCCCccCCCCCe
Q 032800 12 RSYRCKFCRTHLALPEDL 29 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (133)
+.|.|..|+.-+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (27)
T 2kvg_A 2 APYRCPLCRAGCPSLASM 19 (27)
T ss_dssp CTEEETTTTEEESCHHHH
T ss_pred cCcCCCCCCcccCCHHHH
Confidence 358999998766654443
No 51
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.76 E-value=31 Score=20.79 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=9.3
Q ss_pred ceEEecCCCCccCC
Q 032800 12 RSYRCKFCRTHLAL 25 (133)
Q Consensus 12 ~~y~C~~C~thLa~ 25 (133)
.-|.|..|+.+|..
T Consensus 32 ~CF~C~~C~~~L~~ 45 (72)
T 1wyh_A 32 HCFLCSGCEQPLGS 45 (72)
T ss_dssp TTCBCTTTCCBTTT
T ss_pred ccCeECCCCCcCCC
Confidence 34677777777764
No 52
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.71 E-value=26 Score=21.66 Aligned_cols=13 Identities=23% Similarity=0.723 Sum_probs=8.9
Q ss_pred ceEEecCCCCccC
Q 032800 12 RSYRCKFCRTHLA 24 (133)
Q Consensus 12 ~~y~C~~C~thLa 24 (133)
.-|.|..|+.+|.
T Consensus 34 ~CF~C~~C~~~L~ 46 (76)
T 1x68_A 34 ECFNCGKCSVSLV 46 (76)
T ss_dssp GGCBCTTTCCBCS
T ss_pred ccCChhhCCCcCC
Confidence 3467777777775
No 53
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=22.68 E-value=60 Score=24.53 Aligned_cols=32 Identities=22% Similarity=0.103 Sum_probs=23.4
Q ss_pred eeccCCCceEEecceeeccCCCcceeEeeecc
Q 032800 33 AFHCRRGKAYLFNSAVNITVGASEERLMLSGM 64 (133)
Q Consensus 33 ~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 64 (133)
.=.|++|.|+.--++.|+..|...++.+.+|-
T Consensus 57 ~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~ 88 (174)
T 1x6o_A 57 SKTGKHGHAKVSIVATDIFTGNRLEDQAPSTH 88 (174)
T ss_dssp CCC----CCEEEEEEEETTTCCEEEEEEETTS
T ss_pred cCCCCCCceEEEEEEEECCCCCEEEEEeCCCC
Confidence 33699999998889999999999988887774
No 54
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.50 E-value=14 Score=18.54 Aligned_cols=18 Identities=17% Similarity=0.658 Sum_probs=14.2
Q ss_pred ceEEecCCCCccCCCCCe
Q 032800 12 RSYRCKFCRTHLALPEDL 29 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (133)
+.|.|..|..-+...+.|
T Consensus 8 k~~~C~~C~k~f~~~~~l 25 (36)
T 2elq_A 8 KPFKCSLCEYATRSKSNL 25 (36)
T ss_dssp CSEECSSSSCEESCHHHH
T ss_pred CCccCCCCCchhCCHHHH
Confidence 789999999887765544
No 55
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.79 E-value=25 Score=21.91 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=8.3
Q ss_pred EecCCCCccCCCCCee
Q 032800 15 RCKFCRTHLALPEDLV 30 (133)
Q Consensus 15 ~C~~C~thLa~~~~lI 30 (133)
.|..|+.++...+.++
T Consensus 17 ~C~~C~~~I~~~~~~~ 32 (82)
T 2ehe_A 17 TCAECQQLIGHDSREL 32 (82)
T ss_dssp BCTTTCCBCCSSCCBC
T ss_pred cCccCCCccccCcEEE
Confidence 4666666665433343
No 56
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=21.73 E-value=39 Score=21.73 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=9.0
Q ss_pred ceEEecCCCCccC
Q 032800 12 RSYRCKFCRTHLA 24 (133)
Q Consensus 12 ~~y~C~~C~thLa 24 (133)
.-|.|..|+.+|.
T Consensus 32 ~CF~C~~C~~~L~ 44 (101)
T 2cup_A 32 TCFRCAKCLHPLA 44 (101)
T ss_dssp TTCCCSSSCCCTT
T ss_pred cCCcccccCCCCC
Confidence 3477777777774
No 57
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.09 E-value=9.8 Score=17.78 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=12.1
Q ss_pred eEEecCCCCccCCCCCe
Q 032800 13 SYRCKFCRTHLALPEDL 29 (133)
Q Consensus 13 ~y~C~~C~thLa~~~~l 29 (133)
.|.|..|..-+...+.|
T Consensus 2 ~~~C~~C~~~f~~~~~l 18 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHL 18 (29)
T ss_dssp CCBCTTTCCBCSSHHHH
T ss_pred CeECCCCCcccCCHHHH
Confidence 57899998777665444
No 58
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.69 E-value=21 Score=17.97 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=14.2
Q ss_pred ceEEecCCCCccCCC-CCe
Q 032800 12 RSYRCKFCRTHLALP-EDL 29 (133)
Q Consensus 12 ~~y~C~~C~thLa~~-~~l 29 (133)
+.|.|..|..-+... +.|
T Consensus 8 k~~~C~~C~k~f~~~~~~L 26 (37)
T 2elp_A 8 RAMKCPYCDFYFMKNGSDL 26 (37)
T ss_dssp CCEECSSSSCEECSSCHHH
T ss_pred CCeECCCCChhhccCHHHH
Confidence 789999999877765 544
No 59
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.23 E-value=17 Score=18.81 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=14.9
Q ss_pred ceEEecCCCCccCCCCCee
Q 032800 12 RSYRCKFCRTHLALPEDLV 30 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (133)
+.|.|..|..-+...+.|.
T Consensus 10 ~~~~C~~C~k~f~~~~~l~ 28 (42)
T 2epc_A 10 TPYLCGQCGKSFTQRGSLA 28 (42)
T ss_dssp CCEECSSSCCEESSHHHHH
T ss_pred CCeECCCCCcccCCHHHHH
Confidence 7899999998777665554
No 60
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.21 E-value=38 Score=20.97 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=11.4
Q ss_pred ceEEecCCCCccCCCCC
Q 032800 12 RSYRCKFCRTHLALPED 28 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~ 28 (133)
.+|.|..|.+.++..+-
T Consensus 2 ~iY~C~rCg~~fs~~el 18 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQL 18 (48)
T ss_dssp ---CCCCTTTTCCCCCS
T ss_pred cEEEeeccCCCccHHHH
Confidence 37999999998877654
No 61
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.00 E-value=15 Score=18.43 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=13.6
Q ss_pred ceEEecCCCCccCCCCCe
Q 032800 12 RSYRCKFCRTHLALPEDL 29 (133)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (133)
+.|.|..|...+...+.|
T Consensus 8 k~~~C~~C~k~f~~~~~l 25 (36)
T 2elv_A 8 LLYDCHICERKFKNELDR 25 (36)
T ss_dssp CCEECSSSCCEESSHHHH
T ss_pred CCeECCCCCCccCCHHHH
Confidence 789999998776655444
Done!