BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032803
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 112/128 (87%), Gaps = 5/128 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN++ EG P+E+E
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG--PKEDE 115
Query: 121 ESEKSMSE 128
ES+KS+SE
Sbjct: 116 ESDKSVSE 123
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 112/128 (87%), Gaps = 2/128 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN++ EG P+E+E
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG--PKEDE 118
Query: 121 ESEKSMSE 128
ES+KS+SE
Sbjct: 119 ESDKSVSE 126
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 82/119 (68%), Positives = 101/119 (84%), Gaps = 6/119 (5%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKA-GRKS---GKAAKDPNKPKRPASAFFVFMEEFRE 54
MKGGKSK++++ A KL+VNKK A RK GKAAKDPNKPKRP SAFFVFMEEFR+
Sbjct: 1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
+ K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG
Sbjct: 61 VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/133 (63%), Positives = 107/133 (80%), Gaps = 4/133 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ + N KL+V KK A +K+ KA KDPNKPKRP SAFFVFME+FR+ YK+ H
Sbjct: 1 MKGGKSKAKSDN-KLAV-KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 120
P NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G EEE
Sbjct: 59 PNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGA--AEEE 116
Query: 121 ESEKSMSEEDDDE 133
ES+KS SE +DD+
Sbjct: 117 ESDKSRSEVNDDD 129
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 101/135 (74%), Gaps = 10/135 (7%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFR 53
MKGGKSK +++ A KL+VNKK A A + K A KDPNKPKRP SAFFVFM +FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113
EQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE ++ YN++ EG
Sbjct: 61 EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK-LEG 119
Query: 114 TKPEEEEESEKSMSE 128
++EE S+KS SE
Sbjct: 120 K--DDEEGSDKSKSE 132
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 97/132 (73%), Gaps = 6/132 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 119
+P NKSVA VGKA G +WK+M++ DKAPYVAKAE RK EY K+++ YN + A GT EE
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-REE 115
Query: 120 EESEKSMSEEDD 131
++S+KS SE D+
Sbjct: 116 DDSDKSKSEVDE 127
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 93/120 (77%), Gaps = 7/120 (5%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
+K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+ ++ K
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 82/108 (75%), Gaps = 5/108 (4%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+K
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 86 APYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEEDDDE 133
APY KA KRK EYEK M YN+ EG+ +ESEKS SE +D++
Sbjct: 101 APYEEKAAKRKAEYEKQMDAYNKNLEEGS-----DESEKSRSEINDED 143
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 84/112 (75%), Gaps = 4/112 (3%)
Query: 1 MKGGKSKSDTR-NAKLSVNKKPA---KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQY 56
MKG KSK + +AKL+V K A A K GKA KDPNKPKR SAFFVFM EFRE++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60
Query: 57 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108
K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K + YN+
Sbjct: 61 KQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 70/99 (70%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD 84
G K GK KDPN+PK+P S FFVF+++FR+++ +P NKSV VG+A G+KWK+M+E +
Sbjct: 21 GNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEE 80
Query: 85 KAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
+AP+VAK++ +K EY M+ YN A G K ++E +
Sbjct: 81 RAPFVAKSQSKKTEYAVTMQQYNMELANGNKTTGDDEKQ 119
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 23/140 (16%)
Query: 3 GGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNK-----------------PKRPASAF 45
GG S RN +L+V K ++ R+S + P + PK+PA+AF
Sbjct: 17 GGSS----RNLELAV--KSSEGARRSTRLRLQPLRKPKTSPKKKPVKLQTKMPKKPATAF 70
Query: 46 FVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105
F F+++FR+QY++++P KS+ +GK GEKWK+M+ +K Y A +++ E+ + M
Sbjct: 71 FFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTE 130
Query: 106 YNRRQAEGTKPEEEEESEKS 125
Y +R G E E +S+ S
Sbjct: 131 YTKRMESGAHDESETDSDYS 150
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPY 88
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E +K Y
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 164
Query: 89 VAKAEKRKVEYEKDM 103
+ KA + K EY K +
Sbjct: 165 LDKAAELKAEYNKSL 179
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYE 144
Query: 90 AKAEKRKVEYEKDMKNY 106
KA + K +YEKD+ Y
Sbjct: 145 KKASRLKEKYEKDITAY 161
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVA 90
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS +K +
Sbjct: 2 GKDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 91 KAEKRKVEYEKDMKNY 106
A+ KV YE++M++Y
Sbjct: 62 LAKLDKVRYEREMRSY 77
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PKRP S FF+F EF + K +P + V K GE WK++
Sbjct: 80 PAKGGKK-----KDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNL 133
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
++++K PY+ +A K K +YEKD+ Y
Sbjct: 134 NDSEKQPYITQAAKLKEKYEKDVAVY 159
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +PK + A K E+WK+MS+ +K+ + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query: 102 DMKNY 106
++K+Y
Sbjct: 74 EIKDY 78
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 148 KLKEKYEKDVADY 160
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101
SA+ F++ RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 102 DMKNY 106
+MK+Y
Sbjct: 74 EMKDY 78
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PY KA
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ +Y
Sbjct: 147 KLKEKYEKDVADY 159
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102
SA+ F++ RE++KK+ + A K E+WK+MS +KA + A+ KV Y+++
Sbjct: 14 SAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDRE 73
Query: 103 MKNY 106
MK+Y
Sbjct: 74 MKDY 77
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SAFF+F E R + K DHP S+ K GE W DK PY KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 94 KRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A + E+WK+MS +K + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KGDKARYDREMKNY 78
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107
GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 579 AGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 23 KAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M
Sbjct: 530 KSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGM 588
Query: 81 SEADKAPYVAKAEKRKVEYEKDMKNY 106
S+ K + KAE + EYEK MK Y
Sbjct: 589 SKEKKEEWDRKAEDARREYEKAMKEY 614
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 113
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 114 AKLKEKYEKDIAAY 127
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + + DK PY KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKA 148
Query: 93 EKRKVEYEKDMKNY 106
K K +YEKD+ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE++MK Y
Sbjct: 65 KADKARYEREMKTY 78
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +APY
Sbjct: 16 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQRAPYE 74
Query: 90 AKAEKRKVEYEKDMKNYNRRQAE 112
AKA K YE + + YN Q E
Sbjct: 75 AKAAADKKRYEDEKQAYNADQEE 97
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK++SE KAPY A+
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298
Query: 94 KRKVEYEKDMKNYNRRQAEGTKPEEEEESE 123
K K Y ++M+ Y R + E +++EE E
Sbjct: 299 KNKEIYLQEMEGYKRTKEEEAMSQKKEEEE 328
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91
DPNKPK+P S++F+F ++ R+ ++HP N +V A KW + E +K Y +K
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTA---HISLKWMELGEEEKQVYNSK 424
Query: 92 AEKRKVEYEKDMKNYNR 108
A + Y+K+++ YN+
Sbjct: 425 AAELMEAYKKEVEEYNK 441
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV 89
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+ +APY
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSDKQRAPYE 76
Query: 90 AKAEKRKVEYEKDMKNYN 107
AKA K YE + + YN
Sbjct: 77 AKAAADKKRYEDEKQAYN 94
>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1
Length = 709
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMSEADKAPYVAKAEKRKVEYEKDMKNY 106
MS+ K + KAE + +YEK MK Y
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
Length = 709
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 94 KRKVEYEKDMKNY 106
+ EYEK MK Y
Sbjct: 602 DARREYEKAMKEY 614
>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
Length = 108
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
AK+ RK KDPN PKR SAF F E RE+ K D+P + + +G G++WK ++
Sbjct: 5 AKSSRK-----KDPNTPKRNMSAFMFFSIENREKMKTDNP-DATFGQLGSLLGKRWKELT 58
Query: 82 EADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 115
++ PY KA + K YE++ K Y+ + A G K
Sbjct: 59 STEREPYEEKARQDKERYERERKEYDTKLANGEK 92
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
PE=2 SV=1
Length = 456
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DP KPK P SAF V+ E R +++ NKSV V K GE+WK++S+ KAPY A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 94 KRKVEYEKDMKNYNRRQAE 112
K K Y + M+ Y R + E
Sbjct: 308 KNKETYLQAMEEYKRTKEE 326
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPNKPK+PAS++F+F ++ R++ ++ P + A V KWK +SE +K Y KA
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNN-ATVTALISLKWKELSEEEKQVYNGKAA 433
Query: 94 KRKVEYEKDMKNYNRRQAEGT 114
K Y+K+++ YN++ A T
Sbjct: 434 KLMEAYKKEVEAYNKKSAATT 454
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 88
KRP+S++ ++ ++ + KK++P+ G KWKS+S DK PY
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPE-ADFKETSNILGAKWKSLSAEDKKPY 187
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>sp|B2RPK0|HGB1A_HUMAN Putative high mobility group protein B1-like 1 OS=Homo sapiens
GN=HMGB1P1 PE=5 SV=1
Length = 211
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKA 148
Query: 93 EKRKVEYEKDMKNYNRRQAEGTKPE 117
K K +YEKD+ Y QA+G KPE
Sbjct: 149 AKLKEKYEKDIAAY---QAKG-KPE 169
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DP KP+ S++ F++ RE++KK H + + + E+WK+MS +K + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K YE+ MK Y
Sbjct: 65 KADKTHYERQMKTY 78
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95
N PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 96 KVEYEKDMKNY 106
K +YEKD+ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKA 92
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS +K+ + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 93 EKRKVEYEKDMKNY 106
+ K Y+++MKNY
Sbjct: 65 KSDKARYDREMKNY 78
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E +K PY AKA
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKTENPE-ATFGDVGKLLGIKWREMNENEKKPYEAKA 81
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3
SV=1
Length = 116
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 92
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E +K PY AKA
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKTENPE-ATFGDVGKLLGIKWREMNENEKKPYEAKA 81
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85
+K+ + KDPN PKR SA+ F E R+ + ++P + VG+ GEKWK+++E +K
Sbjct: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENP-GITFGQVGRILGEKWKALNEDEK 64
Query: 86 APYVAKAEKRKVEYEKDMKNY 106
APY AKAE K YE + + Y
Sbjct: 65 APYEAKAEADKKRYESEKELY 85
>sp|Q75B82|NHP6_ASHGO Non-histone chromosomal protein 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NHP6
PE=3 SV=1
Length = 94
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93
DPN PKR SA+ F E R+ + ++P S VG+ GEKWK++S+ +K PY AKAE
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENP-GISFGQVGRVLGEKWKALSDDEKQPYEAKAE 75
Query: 94 KRKVEYEKDMKNYNRRQA 111
K YE + + YN +A
Sbjct: 76 ADKKRYESEKELYNATKA 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.300 0.119 0.322
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,756,526
Number of Sequences: 539616
Number of extensions: 2023931
Number of successful extensions: 19769
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 707
Number of HSP's that attempted gapping in prelim test: 14483
Number of HSP's gapped (non-prelim): 3921
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 55 (25.8 bits)