Query 032803
Match_columns 133
No_of_seqs 203 out of 1016
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 2.4E-26 5.1E-31 154.5 11.8 89 18-107 3-93 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.9 4.7E-22 1E-26 128.7 8.2 71 37-108 1-71 (77)
3 cd01388 SOX-TCF_HMG-box SOX-TC 99.9 1.3E-21 2.7E-26 125.2 8.3 70 37-107 1-70 (72)
4 PF00505 HMG_box: HMG (high mo 99.9 5.9E-21 1.3E-25 120.2 9.5 69 38-107 1-69 (69)
5 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 1.4E-20 3.1E-25 117.4 9.3 65 38-103 1-65 (66)
6 smart00398 HMG high mobility g 99.8 2.5E-20 5.5E-25 117.0 9.4 70 37-107 1-70 (70)
7 PF09011 HMG_box_2: HMG-box do 99.8 2.9E-20 6.2E-25 119.2 9.6 72 35-107 1-73 (73)
8 COG5648 NHP6B Chromatin-associ 99.8 1.7E-20 3.7E-25 140.4 8.0 90 26-116 59-148 (211)
9 cd00084 HMG-box High Mobility 99.8 1.6E-18 3.6E-23 107.5 9.3 65 38-103 1-65 (66)
10 KOG0381 HMG box-containing pro 99.8 3.1E-18 6.8E-23 114.5 11.0 76 34-110 17-95 (96)
11 KOG0527 HMG-box transcription 99.7 1.7E-18 3.6E-23 138.8 6.4 77 31-108 56-132 (331)
12 KOG0526 Nucleosome-binding fac 99.7 9.6E-17 2.1E-21 133.5 7.5 79 25-108 523-601 (615)
13 KOG3248 Transcription factor T 99.4 3.9E-13 8.4E-18 107.1 7.2 75 36-111 190-264 (421)
14 KOG4715 SWI/SNF-related matrix 99.3 6E-12 1.3E-16 99.7 9.0 78 31-109 58-135 (410)
15 KOG0528 HMG-box transcription 99.2 1.1E-11 2.5E-16 102.4 2.4 77 32-109 320-396 (511)
16 KOG2746 HMG-box transcription 98.8 4.6E-09 9.9E-14 90.0 5.2 78 24-102 168-247 (683)
17 PF14887 HMG_box_5: HMG (high 98.4 3.3E-06 7.2E-11 54.4 8.2 75 37-113 3-77 (85)
18 PF06382 DUF1074: Protein of u 97.5 0.00088 1.9E-08 49.6 8.1 49 42-95 83-131 (183)
19 PF04690 YABBY: YABBY protein; 97.4 0.00049 1.1E-08 50.8 5.8 49 32-81 116-164 (170)
20 COG5648 NHP6B Chromatin-associ 97.2 0.00033 7.2E-09 53.1 3.1 69 35-104 141-209 (211)
21 PF08073 CHDNT: CHDNT (NUC034) 96.6 0.0037 8E-08 37.9 3.5 40 42-82 13-52 (55)
22 PF06244 DUF1014: Protein of u 95.0 0.045 9.7E-07 38.4 4.2 47 36-83 70-117 (122)
23 PF04769 MAT_Alpha1: Mating-ty 94.7 0.12 2.5E-06 39.3 6.2 56 31-93 37-92 (201)
24 TIGR03481 HpnM hopanoid biosyn 91.5 0.66 1.4E-05 34.9 5.9 46 64-109 64-111 (198)
25 PRK15117 ABC transporter perip 90.0 1.1 2.4E-05 34.0 6.0 46 64-109 68-115 (211)
26 PF05494 Tol_Tol_Ttg2: Toluene 83.1 1.7 3.6E-05 31.5 3.5 45 64-108 38-84 (170)
27 KOG3223 Uncharacterized conser 81.9 0.95 2.1E-05 34.2 1.8 52 36-91 162-214 (221)
28 PF12881 NUT_N: NUT protein N 81.4 5.2 0.00011 32.4 5.9 67 42-109 229-296 (328)
29 PF13875 DUF4202: Domain of un 74.9 6.9 0.00015 29.4 4.6 40 44-87 131-170 (185)
30 COG2854 Ttg2D ABC-type transpo 72.6 5.6 0.00012 30.3 3.6 44 70-113 77-121 (202)
31 PF11304 DUF3106: Protein of u 69.9 25 0.00054 23.8 6.1 24 69-92 12-35 (107)
32 PRK12751 cpxP periplasmic stre 56.3 33 0.00073 25.1 5.0 31 70-100 120-150 (162)
33 PRK10363 cpxP periplasmic repr 54.7 37 0.00081 25.0 5.0 41 67-108 111-151 (166)
34 PRK09706 transcriptional repre 54.1 50 0.0011 22.8 5.5 43 68-110 87-129 (135)
35 PF01352 KRAB: KRAB box; Inte 54.0 12 0.00027 20.9 1.9 29 66-94 3-32 (41)
36 PRK12750 cpxP periplasmic repr 52.6 52 0.0011 24.2 5.6 33 71-103 128-160 (170)
37 PRK10236 hypothetical protein; 48.4 21 0.00045 27.9 3.0 26 69-94 118-143 (237)
38 PF06945 DUF1289: Protein of u 48.2 30 0.00065 20.2 3.1 25 65-94 23-47 (51)
39 PF12650 DUF3784: Domain of un 41.5 18 0.0004 23.6 1.6 16 76-91 25-40 (97)
40 KOG3838 Mannose lectin ERGIC-5 40.8 33 0.00072 29.0 3.2 38 79-116 268-305 (497)
41 PF00887 ACBP: Acyl CoA bindin 37.7 1.1E+02 0.0023 19.5 5.3 53 45-99 30-86 (87)
42 TIGR00787 dctP tripartite ATP- 34.8 1E+02 0.0022 23.4 5.1 28 74-101 213-240 (257)
43 PRK10455 periplasmic protein; 32.7 1.1E+02 0.0023 22.3 4.6 27 69-95 119-145 (161)
44 PF09164 VitD-bind_III: Vitami 32.0 1.3E+02 0.0029 18.8 4.9 33 43-76 9-41 (68)
45 cd07081 ALDH_F20_ACDH_EutE-lik 30.6 1.5E+02 0.0033 24.9 5.7 41 68-108 6-46 (439)
46 PF03480 SBP_bac_7: Bacterial 28.6 1.2E+02 0.0027 23.3 4.6 29 74-102 213-241 (286)
47 COG1638 DctP TRAP-type C4-dica 27.9 1.3E+02 0.0029 24.3 4.8 36 73-108 243-278 (332)
48 KOG1610 Corticosteroid 11-beta 27.6 2E+02 0.0043 23.5 5.6 58 47-107 187-256 (322)
49 smart00271 DnaJ DnaJ molecular 26.7 1.2E+02 0.0026 17.2 3.3 32 52-83 22-58 (60)
50 PF07813 LTXXQ: LTXXQ motif fa 25.8 1.3E+02 0.0029 18.8 3.7 25 67-91 75-99 (100)
51 PF05388 Carbpep_Y_N: Carboxyp 25.3 1.4E+02 0.0031 20.4 3.9 30 66-95 45-74 (113)
52 cd07133 ALDH_CALDH_CalB Conife 25.0 2.2E+02 0.0047 23.7 5.7 41 68-108 5-45 (434)
53 cd07122 ALDH_F20_ACDH Coenzyme 24.3 2.2E+02 0.0048 23.9 5.6 41 68-108 6-46 (436)
54 cd07132 ALDH_F3AB Aldehyde deh 24.0 2.1E+02 0.0047 23.8 5.5 42 68-109 5-46 (443)
55 PTZ00037 DnaJ_C chaperone prot 23.7 1.8E+02 0.004 24.4 5.0 43 49-91 46-88 (421)
56 KOG2880 SMAD6 interacting prot 23.7 4.1E+02 0.0088 22.4 6.8 66 42-110 52-119 (424)
57 PF15581 Imm35: Immunity prote 23.1 90 0.0019 20.7 2.4 22 65-86 31-52 (93)
58 PF02026 RyR: RyR domain; Int 22.7 87 0.0019 20.7 2.4 21 76-96 60-80 (94)
59 PRK14291 chaperone protein Dna 22.6 1.9E+02 0.004 23.8 4.8 39 51-90 23-65 (382)
60 cd08317 Death_ank Death domain 22.2 48 0.001 21.0 1.0 49 64-112 5-60 (84)
61 PF09655 Nitr_red_assoc: Conse 22.1 1.8E+02 0.0039 21.0 4.0 41 75-115 33-76 (144)
62 PF15076 DUF4543: Domain of un 21.7 61 0.0013 20.4 1.3 21 31-51 25-45 (75)
63 PRK14296 chaperone protein Dna 21.7 1.9E+02 0.0042 23.7 4.7 39 51-90 24-66 (372)
64 cd07087 ALDH_F3-13-14_CALDH-li 21.5 2.6E+02 0.0056 23.1 5.5 42 68-109 5-46 (426)
65 cd07085 ALDH_F6_MMSDH Methylma 21.1 2.8E+02 0.0061 23.2 5.7 38 70-107 47-84 (478)
66 PF08367 M16C_assoc: Peptidase 20.8 2.3E+02 0.005 21.6 4.7 30 67-96 13-42 (248)
67 cd06257 DnaJ DnaJ domain or J- 20.5 1.7E+02 0.0037 16.1 3.8 31 51-81 20-54 (55)
68 KOG1827 Chromatin remodeling c 20.4 5.3 0.00011 35.3 -4.9 44 41-85 552-595 (629)
69 PRK10266 curved DNA-binding pr 20.3 2.6E+02 0.0056 22.2 5.1 40 51-90 24-66 (306)
70 PF06628 Catalase-rel: Catalas 20.2 1.1E+02 0.0023 18.7 2.3 19 72-90 12-30 (68)
71 PRK14279 chaperone protein Dna 20.1 1.7E+02 0.0037 24.2 4.1 40 51-91 29-73 (392)
72 PHA03102 Small T antigen; Revi 20.1 1.8E+02 0.0039 21.0 3.7 36 50-85 26-61 (153)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.94 E-value=2.4e-26 Score=154.55 Aligned_cols=89 Identities=44% Similarity=0.696 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHHhHHHHHHHHHH
Q 032803 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (133)
Q Consensus 18 ~k~~~~~~kk~~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~--~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~ 95 (133)
++.+.+.+++++++.+||+.|+||+|||+|||.++|..|..+||+ +. +++|+++||++|+.||+++|++|.++|..+
T Consensus 3 ~~~~~~~~k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~-~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~d 81 (94)
T PTZ00199 3 KKQGKVLVRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPE-LAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQED 81 (94)
T ss_pred ccccCccccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355677777888889999999999999999999999999999999 64 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 032803 96 KVEYEKDMKNYN 107 (133)
Q Consensus 96 k~~y~~e~~~y~ 107 (133)
+.+|..+|..|+
T Consensus 82 k~rY~~e~~~Y~ 93 (94)
T PTZ00199 82 KVRYEKEKAEYA 93 (94)
T ss_pred HHHHHHHHHHHh
Confidence 999999999996
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.87 E-value=4.7e-22 Score=128.66 Aligned_cols=71 Identities=27% Similarity=0.437 Sum_probs=68.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 37 ~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
+|+||+|||||||++.|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..++++|+-
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky 71 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPG-LTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKY 71 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence 48999999999999999999999999 899999999999999999999999999999999999999999974
No 3
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.86 E-value=1.3e-21 Score=125.23 Aligned_cols=70 Identities=33% Similarity=0.547 Sum_probs=67.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032803 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (133)
Q Consensus 37 ~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (133)
..|||+||||+||+++|..++.+||+ +++.+|+++||+.|+.||+++|++|.++|..++++|..++++|+
T Consensus 1 ~iKrP~naf~~F~~~~r~~~~~~~p~-~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~ 70 (72)
T cd01388 1 HIKRPMNAFMLFSKRHRRKVLQEYPL-KENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYK 70 (72)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 36899999999999999999999999 89999999999999999999999999999999999999999885
No 4
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.85 E-value=5.9e-21 Score=120.21 Aligned_cols=69 Identities=42% Similarity=0.758 Sum_probs=65.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032803 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (133)
Q Consensus 38 PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (133)
|+||+|||+|||.+++..++.+||+ +++.+|+++||++|+.||+++|++|.+.|..++..|..++..|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~-~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPD-LSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTT-STHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcc-cccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999 89999999999999999999999999999999999999999995
No 5
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.84 E-value=1.4e-20 Score=117.36 Aligned_cols=65 Identities=54% Similarity=0.844 Sum_probs=63.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHH
Q 032803 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (133)
Q Consensus 38 PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~ 103 (133)
||+|+|||++|++++|..++..||+ +++.+|++.||.+|+.||+++|++|.+.|..++.+|..+|
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~-~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPD-ASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999 8999999999999999999999999999999999999886
No 6
>smart00398 HMG high mobility group.
Probab=99.84 E-value=2.5e-20 Score=117.01 Aligned_cols=70 Identities=49% Similarity=0.806 Sum_probs=67.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032803 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (133)
Q Consensus 37 ~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (133)
+|++|+|||++|++++|..+..+||+ +++.+|+++||.+|+.|++++|++|.++|..++.+|..++..|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPD-LSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999 89999999999999999999999999999999999999999884
No 7
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.84 E-value=2.9e-20 Score=119.20 Aligned_cols=72 Identities=46% Similarity=0.807 Sum_probs=63.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032803 35 PNKPKRPASAFFVFMEEFREQYKKD-HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (133)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~k~~-~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (133)
|++||+|+|||+||+.+++..++.. ++. .++.++++.|+..|+.||++||.+|.++|..++.+|..+|..|+
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~-~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQK-QSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T--SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999988 665 78999999999999999999999999999999999999999985
No 8
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.83 E-value=1.7e-20 Score=140.45 Aligned_cols=90 Identities=33% Similarity=0.692 Sum_probs=84.7
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHH
Q 032803 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (133)
Q Consensus 26 kk~~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~ 105 (133)
+..+++.+|||.||||+||||+|+.++|.+|+..+|+ +++.+|+++||++|++|++++|++|...|..++++|..++..
T Consensus 59 k~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~-l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~ 137 (211)
T COG5648 59 KRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPK-LTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEE 137 (211)
T ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHh
Confidence 5557788999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCC
Q 032803 106 YNRRQAEGTKP 116 (133)
Q Consensus 106 y~~~~~~~~~~ 116 (133)
|..+++...-.
T Consensus 138 y~~k~~~~~~~ 148 (211)
T COG5648 138 YNKKLPNKAPI 148 (211)
T ss_pred hhcccCCCCCC
Confidence 99998876543
No 9
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.78 E-value=1.6e-18 Score=107.52 Aligned_cols=65 Identities=51% Similarity=0.812 Sum_probs=62.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHH
Q 032803 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (133)
Q Consensus 38 PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~ 103 (133)
|++|+|||++|+++.|..+...||+ +++.+|++.||.+|+.|++++|.+|.+.|..++..|..++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPG-LSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999 8999999999999999999999999999999999998765
No 10
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.78 E-value=3.1e-18 Score=114.52 Aligned_cols=76 Identities=47% Similarity=0.788 Sum_probs=72.6
Q ss_pred CC--CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHH-HHHHhC
Q 032803 34 DP--NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK-NYNRRQ 110 (133)
Q Consensus 34 dp--~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~-~y~~~~ 110 (133)
|| +.|++|++||++|+.++|..++..||+ +++.+|+++||++|++|++++|++|...|..++.+|..+|. .|+..+
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~-~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~~~ 95 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPG-LSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKASL 95 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56 599999999999999999999999999 99999999999999999999999999999999999999999 998754
No 11
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.75 E-value=1.7e-18 Score=138.78 Aligned_cols=77 Identities=30% Similarity=0.560 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 31 ~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
......+.||||||||+|.+..|.+|..+||+ +.++||+|+||.+|+.|+++||.+|+++|++++..|.+++.+|+=
T Consensus 56 ~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~-mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKY 132 (331)
T KOG0527|consen 56 DKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPK-MHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKY 132 (331)
T ss_pred CCCCccccCCCcchhhhhhHHHHHHHHHhCcc-hhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCccc
Confidence 34566899999999999999999999999999 899999999999999999999999999999999999999999974
No 12
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.67 E-value=9.6e-17 Score=133.54 Aligned_cols=79 Identities=46% Similarity=0.731 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHH
Q 032803 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (133)
Q Consensus 25 ~kk~~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~ 104 (133)
+.++.|+.+|||+|||++||||+|++..|..|+.+ + .++++|++.+|++|+.|+. |.+|++.|+.++++|+.+|.
T Consensus 523 ~~k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--g-i~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~ 597 (615)
T KOG0526|consen 523 KKKKGKKKKDPNAPKRATSAYMLWLNASRESIKED--G-ISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMK 597 (615)
T ss_pred cccCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--C-chHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHH
Confidence 34667889999999999999999999999999987 5 8999999999999999999 99999999999999999999
Q ss_pred HHHH
Q 032803 105 NYNR 108 (133)
Q Consensus 105 ~y~~ 108 (133)
+|+.
T Consensus 598 ~yk~ 601 (615)
T KOG0526|consen 598 EYKN 601 (615)
T ss_pred hhcC
Confidence 9993
No 13
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=99.42 E-value=3.9e-13 Score=107.11 Aligned_cols=75 Identities=24% Similarity=0.434 Sum_probs=68.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 032803 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (133)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~ 111 (133)
...|+|+||||||+++.|..|..++-- ....+|.++||++|.+||-+|..+|.++|.++++.|.+.+..|.+...
T Consensus 190 phiKKPLNAFmlyMKEmRa~vvaEctl-KeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdN 264 (421)
T KOG3248|consen 190 PHIKKPLNAFMLYMKEMRAKVVAECTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDN 264 (421)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Confidence 367999999999999999999999876 577899999999999999999999999999999999999999987543
No 14
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=99.34 E-value=6e-12 Score=99.68 Aligned_cols=78 Identities=26% Similarity=0.570 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 31 ~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
..+.|.+|-+|+-+||.|++..+++|+..||+ +...+|.++||.+|..|+++||+.|...++..+..|.+-|..|+..
T Consensus 58 ~pkpPkppekpl~pymrySrkvWd~VkA~nPe-~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~s 135 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMPYMRYSRKVWDQVKASNPE-LKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNS 135 (410)
T ss_pred CCCCCCCCCcccchhhHHhhhhhhhhhccCcc-hHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 44568889999999999999999999999999 9999999999999999999999999999999999999999999863
No 15
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=99.16 E-value=1.1e-11 Score=102.45 Aligned_cols=77 Identities=25% Similarity=0.452 Sum_probs=69.6
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
...+...||||||||+|.++.|-.|...+|| +-...|+++||.+|+.|+..||++|.+.-.++-..|.+.+++|+-+
T Consensus 320 ~ss~PHIKRPMNAFMVWAkDERRKILqA~PD-MHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYk 396 (511)
T KOG0528|consen 320 ASSEPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYK 396 (511)
T ss_pred CCCCccccCCcchhhcccchhhhhhhhcCcc-ccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccC
Confidence 3445678999999999999999999999999 7778999999999999999999999999888888999998888753
No 16
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.82 E-value=4.6e-09 Score=89.98 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=71.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHH--HHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHH
Q 032803 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFR--EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101 (133)
Q Consensus 24 ~~kk~~k~~~dp~~PKrP~say~lF~~e~r--~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~ 101 (133)
.+..+-..+++....++|||+|+||++.+| ..+...||+ ....-|+++||++|-.|-+.||+.|.++|.+.++.|.+
T Consensus 168 ~kdgrspnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn-~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfk 246 (683)
T KOG2746|consen 168 EKDGRSPNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPN-QDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFK 246 (683)
T ss_pred ccccCCCCcCcchhhhhhhHHHHHHHhhcCCccchhccCcc-ccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhh
Confidence 345556677788899999999999999999 889999999 89999999999999999999999999999999999887
Q ss_pred H
Q 032803 102 D 102 (133)
Q Consensus 102 e 102 (133)
.
T Consensus 247 a 247 (683)
T KOG2746|consen 247 A 247 (683)
T ss_pred h
Confidence 6
No 17
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=98.40 E-value=3.3e-06 Score=54.44 Aligned_cols=75 Identities=20% Similarity=0.385 Sum_probs=61.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 032803 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113 (133)
Q Consensus 37 ~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~~~ 113 (133)
.|..|-+|--||.+.........++. -...+ .+.+...|++|++.+|-+|+..|.++..+|+.+|.+|+...+..
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~-dr~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~~~~ 77 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRN-DRKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAPADA 77 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTS-THHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CCCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhH-hHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 57788999999999999999988887 44444 56899999999999999999999999999999999999866554
No 18
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.48 E-value=0.00088 Score=49.63 Aligned_cols=49 Identities=29% Similarity=0.435 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHH
Q 032803 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (133)
Q Consensus 42 ~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~ 95 (133)
-+||+-|+.++|. .|.+ +...|+....+..|..|++.+|..|..++...
T Consensus 83 nnaYLNFLReFRr----kh~~-L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~ 131 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCG-LSPQDLIQRAARAWCRLSEAEKNRYRRMAPSV 131 (183)
T ss_pred chHHHHHHHHHHH----HccC-CCHHHHHHHHHHHHHhCCHHHHHHHHhhcchh
Confidence 3789999999876 4566 88999999999999999999999999876544
No 19
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.38 E-value=0.00049 Score=50.84 Aligned_cols=49 Identities=29% Similarity=0.430 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCC
Q 032803 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81 (133)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls 81 (133)
.+.|.+..|-+|||..|+++.-..|+..+|+ ++..|.....+..|...+
T Consensus 116 ~kPPEKRqR~psaYn~f~k~ei~rik~~~p~-ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 116 NKPPEKRQRVPSAYNRFMKEEIQRIKAENPD-ISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred cCCccccCCCchhHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhhhCc
Confidence 3445555677899999999999999999999 999999999999998765
No 20
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=97.18 E-value=0.00033 Score=53.08 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=61.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHH
Q 032803 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (133)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~ 104 (133)
..+++.|..+|+-|-...|..+...+|+ ....+++++++..|..|++.-|.+|.+.+..++..|...+.
T Consensus 141 k~~~~~~~~~~~e~~~~~r~~~~~~~~~-~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~ 209 (211)
T COG5648 141 KLPNKAPIGPFIENEPKIRPKVEGPSPD-KALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYP 209 (211)
T ss_pred ccCCCCCCchhhhccHHhccccCCCCcc-hhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhcc
Confidence 3567888899999999999999999998 78899999999999999999999999999999988876653
No 21
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.56 E-value=0.0037 Score=37.89 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCCh
Q 032803 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82 (133)
Q Consensus 42 ~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~ 82 (133)
++.|-+|.+..|+.|...||+ +..+.+..+++..|+..++
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk-~~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPK-APMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CcHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999 8999999999999987553
No 22
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=94.99 E-value=0.045 Score=38.43 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=40.6
Q ss_pred CCC-CCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChH
Q 032803 36 NKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83 (133)
Q Consensus 36 ~~P-KrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~e 83 (133)
.+| +|-.-||.-|+...-+.|+.+||+ +..+++-.+|-..|...|+.
T Consensus 70 rHPErR~KAAy~afeE~~Lp~lK~E~Pg-LrlsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 70 RHPERRMKAAYKAFEERRLPELKEENPG-LRLSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred CCcchhHHHHHHHHHHHHhHHHHhhCCC-chHHHHHHHHHHHHhcCCCC
Confidence 344 444578999999999999999999 99999999999999887753
No 23
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=94.73 E-value=0.12 Score=39.30 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHH
Q 032803 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93 (133)
Q Consensus 31 ~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~ 93 (133)
.......++||+|+||+|..-.- ...|+ ....+++..|+..|..=+- |..|.-+|.
T Consensus 37 ~~~~~~~~kr~lN~Fm~FRsyy~----~~~~~-~~Qk~~S~~l~~lW~~dp~--k~~W~l~ak 92 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAFRSYYS----PIFPP-LPQKELSGILTKLWEKDPF--KNKWSLMAK 92 (201)
T ss_pred ccccccccccchhHHHHHHHHHH----hhcCC-cCHHHHHHHHHHHHhCCcc--HhHHHHHhh
Confidence 34455678999999999986664 34555 6778999999999997432 455555443
No 24
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=91.54 E-value=0.66 Score=34.89 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=39.6
Q ss_pred CCHHHHHH-HHHHHhhCCChHHhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 032803 64 KSVAAVGK-AGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRR 109 (133)
Q Consensus 64 ~~~~eisk-~l~~~Wk~ls~eeK~~Y~~~a~~-~k~~y~~e~~~y~~~ 109 (133)
..+..|++ .||..|+.+|+++++.|.+.... ....|-..+..|...
T Consensus 64 ~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~~ 111 (198)
T TIGR03481 64 FDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAGE 111 (198)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 46778876 68999999999999999999988 677899999988753
No 25
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=90.04 E-value=1.1 Score=34.01 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=38.8
Q ss_pred CCHHHHHH-HHHHHhhCCChHHhHHHHHHHHHH-HHHHHHHHHHHHHh
Q 032803 64 KSVAAVGK-AGGEKWKSMSEADKAPYVAKAEKR-KVEYEKDMKNYNRR 109 (133)
Q Consensus 64 ~~~~eisk-~l~~~Wk~ls~eeK~~Y~~~a~~~-k~~y~~e~~~y~~~ 109 (133)
..+..+++ .||..|+.+|+++++.|.+..... ...|-..+..|...
T Consensus 68 ~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~q 115 (211)
T PRK15117 68 VQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHGQ 115 (211)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 56777766 689999999999999999988885 56799999999753
No 26
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=83.14 E-value=1.7 Score=31.48 Aligned_cols=45 Identities=18% Similarity=0.367 Sum_probs=34.4
Q ss_pred CCHHHHHHH-HHHHhhCCChHHhHHHHHHHHHH-HHHHHHHHHHHHH
Q 032803 64 KSVAAVGKA-GGEKWKSMSEADKAPYVAKAEKR-KVEYEKDMKNYNR 108 (133)
Q Consensus 64 ~~~~eisk~-l~~~Wk~ls~eeK~~Y~~~a~~~-k~~y~~e~~~y~~ 108 (133)
..+..|++. ||..|+.||+++++.|.+..... ...|-..+..|..
T Consensus 38 ~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~ 84 (170)
T PF05494_consen 38 FDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSG 84 (170)
T ss_dssp B-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred CCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 567777765 78899999999999999988875 5668888888875
No 27
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.86 E-value=0.95 Score=34.24 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=43.0
Q ss_pred CCC-CCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHH
Q 032803 36 NKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91 (133)
Q Consensus 36 ~~P-KrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~ 91 (133)
.+| +|=..||.-|-...-+.|+.+||+ +.++++-.+|-.+|..-|+. ||..+
T Consensus 162 rHPEkRmrAA~~afEe~~LPrLK~e~P~-lrlsQ~Kqll~Kew~KsPDN---P~Nq~ 214 (221)
T KOG3223|consen 162 RHPEKRMRAAFKAFEEARLPRLKKENPG-LRLSQYKQLLKKEWQKSPDN---PFNQA 214 (221)
T ss_pred cChHHHHHHHHHHHHHhhchhhhhcCCC-ccHHHHHHHHHHHHhhCCCC---hhhHH
Confidence 455 444577999999999999999999 99999999999999988874 45443
No 28
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=81.36 E-value=5.2 Score=32.39 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHH-HHHHHHHHHh
Q 032803 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY-EKDMKNYNRR 109 (133)
Q Consensus 42 ~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y-~~e~~~y~~~ 109 (133)
..||.+|..-.--.+....|. ++.-|-..+.-+.|...|.-+|-.|.++|++-.+-= +++|+.-+-+
T Consensus 229 ~EAlSCFLIpvLrsLar~kPt-MtlEeGl~ra~qEW~~~SnfdRmifyemaekFmEFEaeEEmq~q~lq 296 (328)
T PF12881_consen 229 AEALSCFLIPVLRSLARLKPT-MTLEEGLWRAVQEWQHTSNFDRMIFYEMAEKFMEFEAEEEMQIQKLQ 296 (328)
T ss_pred hhhhhhhHHHHHHHHHhcCCC-ccHHHHHHHHHHHhhccccccHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence 356666666665556667787 788898899999999999999999999999875322 1455544443
No 29
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=74.94 E-value=6.9 Score=29.38 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHH
Q 032803 44 AFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAP 87 (133)
Q Consensus 44 ay~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~ 87 (133)
+-++|...+...+...|.. ..+..+|...|+.||+.-++.
T Consensus 131 acLVFL~~~f~~F~~~~de----eK~v~Il~KTw~KMS~~g~~~ 170 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKHDE----EKIVDILRKTWRKMSERGHEA 170 (185)
T ss_pred HHHHhHHHHHHHHHhcCCH----HHHHHHHHHHHHHCCHHHHHH
Confidence 5788999999999888743 578899999999999988753
No 30
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.59 E-value=5.6 Score=30.28 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=36.8
Q ss_pred HHHHHHHhhCCChHHhHHHHHHHHH-HHHHHHHHHHHHHHhCCCC
Q 032803 70 GKAGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRRQAEG 113 (133)
Q Consensus 70 sk~l~~~Wk~ls~eeK~~Y~~~a~~-~k~~y~~e~~~y~~~~~~~ 113 (133)
...||.-|+.+|+++++.|...... ....|-..+..|+.+...-
T Consensus 77 ~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~~~v 121 (202)
T COG2854 77 KLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQTLKV 121 (202)
T ss_pred HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcee
Confidence 3458899999999999999998887 4667999999999875543
No 31
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=69.93 E-value=25 Score=23.82 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=10.5
Q ss_pred HHHHHHHHhhCCChHHhHHHHHHH
Q 032803 69 VGKAGGEKWKSMSEADKAPYVAKA 92 (133)
Q Consensus 69 isk~l~~~Wk~ls~eeK~~Y~~~a 92 (133)
+..-+...|+.|++..+..+...+
T Consensus 12 ~L~pl~~~W~~l~~~qr~k~l~~a 35 (107)
T PF11304_consen 12 ALAPLAERWNSLPPEQRRKWLQIA 35 (107)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334444444444444444444333
No 32
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=56.32 E-value=33 Score=25.08 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=23.9
Q ss_pred HHHHHHHhhCCChHHhHHHHHHHHHHHHHHH
Q 032803 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100 (133)
Q Consensus 70 sk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~ 100 (133)
.+...++++.|++++|..|.+..++-.....
T Consensus 120 ~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~ 150 (162)
T PRK12751 120 AKVRNQMYNLLTPEQKEALNKKHQERIEKLQ 150 (162)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4555678899999999999997777655553
No 33
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=54.67 E-value=37 Score=25.05 Aligned_cols=41 Identities=10% Similarity=0.278 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 67 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 67 ~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
.++.++-.++++.|++++|..|.+..++-...+.. +..+..
T Consensus 111 Vem~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~-~~~~q~ 151 (166)
T PRK10363 111 VEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRD-VTQWQK 151 (166)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHhcCc
Confidence 34566677899999999999999988887777754 554443
No 34
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=54.11 E-value=50 Score=22.75 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 032803 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (133)
Q Consensus 68 eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~ 110 (133)
.-...|-..|+.|+++++.............|..-+++|-.+.
T Consensus 87 ~~~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (135)
T PRK09706 87 EDQKELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKAR 129 (135)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457889999999999999999999999999999999887653
No 35
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=53.97 E-value=12 Score=20.94 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=16.3
Q ss_pred HHHHHHHHH-HHhhCCChHHhHHHHHHHHH
Q 032803 66 VAAVGKAGG-EKWKSMSEADKAPYVAKAEK 94 (133)
Q Consensus 66 ~~eisk~l~-~~Wk~ls~eeK~~Y~~~a~~ 94 (133)
|.+|+--++ +.|..|.+.+|.-|.+.-.+
T Consensus 3 f~Dvav~fs~eEW~~L~~~Qk~ly~dvm~E 32 (41)
T PF01352_consen 3 FEDVAVYFSQEEWELLDPAQKNLYRDVMLE 32 (41)
T ss_dssp ----TT---HHHHHTS-HHHHHHHHHHHHH
T ss_pred EEEEEEEcChhhcccccceecccchhHHHH
Confidence 445555454 56999999999998876543
No 36
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=52.61 E-value=52 Score=24.17 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=27.2
Q ss_pred HHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHH
Q 032803 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (133)
Q Consensus 71 k~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~ 103 (133)
+...+.+..|++++|..|.++..+-...|...+
T Consensus 128 ~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~ 160 (170)
T PRK12750 128 EKRHQMLSILTPEQKAKFQELQQERMQECQDKM 160 (170)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999999888877777666
No 37
>PRK10236 hypothetical protein; Provisional
Probab=48.45 E-value=21 Score=27.88 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.7
Q ss_pred HHHHHHHHhhCCChHHhHHHHHHHHH
Q 032803 69 VGKAGGEKWKSMSEADKAPYVAKAEK 94 (133)
Q Consensus 69 isk~l~~~Wk~ls~eeK~~Y~~~a~~ 94 (133)
+.+++...|..||++|++.+.+.-..
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~l~~ 143 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHAVDA 143 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhh
Confidence 57889999999999999888765443
No 38
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=48.23 E-value=30 Score=20.19 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHhhCCChHHhHHHHHHHHH
Q 032803 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94 (133)
Q Consensus 65 ~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~ 94 (133)
+..||.. |..|++++|.........
T Consensus 23 T~dEI~~-----W~~~s~~er~~i~~~l~~ 47 (51)
T PF06945_consen 23 TLDEIRD-----WKSMSDDERRAILARLRA 47 (51)
T ss_pred cHHHHHH-----HhhCCHHHHHHHHHHHHH
Confidence 4556654 999999999776654443
No 39
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=41.50 E-value=18 Score=23.62 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.7
Q ss_pred HhhCCChHHhHHHHHH
Q 032803 76 KWKSMSEADKAPYVAK 91 (133)
Q Consensus 76 ~Wk~ls~eeK~~Y~~~ 91 (133)
-|+.||++||+.|...
T Consensus 25 Gyntms~eEk~~~D~~ 40 (97)
T PF12650_consen 25 GYNTMSKEEKEKYDKK 40 (97)
T ss_pred hcccCCHHHHHHhhHH
Confidence 4899999999999763
No 40
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.85 E-value=33 Score=29.00 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=31.9
Q ss_pred CCChHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 032803 79 SMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKP 116 (133)
Q Consensus 79 ~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~~~~~~ 116 (133)
.|.+.+|++|.+..+.....|.++..+|.+.+++...+
T Consensus 268 E~qe~ek~kyqeEfe~~q~elek~k~efkk~hpd~~~e 305 (497)
T KOG3838|consen 268 EMQELEKAKYQEEFEWAQLELEKRKDEFKKSHPDAQGE 305 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHhhhccCCchhhcc
Confidence 34567899999999999999999999999988876653
No 41
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=37.70 E-value=1.1e+02 Score=19.48 Aligned_cols=53 Identities=17% Similarity=0.366 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCC----hHHhHHHHHHHHHHHHHH
Q 032803 45 FFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS----EADKAPYVAKAEKRKVEY 99 (133)
Q Consensus 45 y~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls----~eeK~~Y~~~a~~~k~~y 99 (133)
|-+|.+.....+....|+...+ +.+.--..|+.|. ++-++.|++........|
T Consensus 30 YalyKQAt~Gd~~~~~P~~~d~--~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~~~~~~ 86 (87)
T PF00887_consen 30 YALYKQATHGDCDTPRPGFFDI--EGRAKWDAWKALKGMSKEEAMREYIELVEELIPKY 86 (87)
T ss_dssp HHHHHHHHTSS--S-CTTTTCH--HHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCcchhH--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 6667666655555555653333 3333456798876 455667777777665555
No 42
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=34.79 E-value=1e+02 Score=23.37 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=21.4
Q ss_pred HHHhhCCChHHhHHHHHHHHHHHHHHHH
Q 032803 74 GEKWKSMSEADKAPYVAKAEKRKVEYEK 101 (133)
Q Consensus 74 ~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~ 101 (133)
...|..||++.|+...+.+...-..+..
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~~~~~~~~ 240 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKEAGEYQRK 240 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999998877766444333
No 43
>PRK10455 periplasmic protein; Reviewed
Probab=32.72 E-value=1.1e+02 Score=22.30 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=20.2
Q ss_pred HHHHHHHHhhCCChHHhHHHHHHHHHH
Q 032803 69 VGKAGGEKWKSMSEADKAPYVAKAEKR 95 (133)
Q Consensus 69 isk~l~~~Wk~ls~eeK~~Y~~~a~~~ 95 (133)
..+....++..|++++|+.|.+..++.
T Consensus 119 ~~~~~~qiy~vLTPEQr~q~~~~~ekr 145 (161)
T PRK10455 119 HMETQNKIYNVLTPEQKKQFNANFEKR 145 (161)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445556789999999999998765443
No 44
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=32.01 E-value=1.3e+02 Score=18.82 Aligned_cols=33 Identities=9% Similarity=0.260 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 032803 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76 (133)
Q Consensus 43 say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~ 76 (133)
+.|.=|-+.-.+.++...|+ .+..+|..++.++
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~-at~~~l~~lve~R 41 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPD-ATPTELKELVEKR 41 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TT-S-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Confidence 45777888888889999999 7888887777654
No 45
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=30.58 E-value=1.5e+02 Score=24.90 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 68 eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
+.++..-..|+.++..+|..+...+....+.+..++.....
T Consensus 6 ~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~ 46 (439)
T cd07081 6 AAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKLAV 46 (439)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667899999999999999999988888888887754
No 46
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=28.58 E-value=1.2e+02 Score=23.27 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=20.7
Q ss_pred HHHhhCCChHHhHHHHHHHHHHHHHHHHH
Q 032803 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKD 102 (133)
Q Consensus 74 ~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e 102 (133)
...|..||++.|+...+.+......+...
T Consensus 213 ~~~w~~L~~e~q~~l~~~~~~~~~~~~~~ 241 (286)
T PF03480_consen 213 KDWWDSLPDEDQEALDDAADEAEARAREY 241 (286)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999998777665444333
No 47
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=27.89 E-value=1.3e+02 Score=24.32 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=27.0
Q ss_pred HHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 73 l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
-...|..||++.++...+.+.+..........+...
T Consensus 243 s~~~w~~L~~e~q~il~~aa~e~~~~~~~~~~~~e~ 278 (332)
T COG1638 243 SKAFWDSLPEEDQTILLEAAKEAAEEQRKLVEELED 278 (332)
T ss_pred cHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999888876655555544443
No 48
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=27.62 E-value=2e+02 Score=23.55 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhC-------CCC-----CCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032803 47 VFMEEFREQYKKDH-------PKN-----KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (133)
Q Consensus 47 lF~~e~r~~~k~~~-------p~~-----~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (133)
.|+...|.++..-. |+. .+...+.+.+.+.|..|+++.|+.|=+.+..+ |...+..|.
T Consensus 187 af~D~lR~EL~~fGV~VsiiePG~f~T~l~~~~~~~~~~~~~w~~l~~e~k~~YGedy~~~---~~~~~~~~~ 256 (322)
T KOG1610|consen 187 AFSDSLRRELRPFGVKVSIIEPGFFKTNLANPEKLEKRMKEIWERLPQETKDEYGEDYFED---YKKSLEKYL 256 (322)
T ss_pred HHHHHHHHHHHhcCcEEEEeccCccccccCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---HHHHHHhhh
Confidence 36777777665321 221 24578999999999999999999998776654 333444444
No 49
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=26.66 E-value=1.2e+02 Score=17.24 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCCC-----HHHHHHHHHHHhhCCChH
Q 032803 52 FREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEA 83 (133)
Q Consensus 52 ~r~~~k~~~p~~~~-----~~eisk~l~~~Wk~ls~e 83 (133)
.+..++.-||+... ..+....|.+.|..|.+.
T Consensus 22 y~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 22 YRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred HHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 34455666888333 345666777777776654
No 50
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=25.76 E-value=1.3e+02 Score=18.85 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhCCChHHhHHHHHH
Q 032803 67 AAVGKAGGEKWKSMSEADKAPYVAK 91 (133)
Q Consensus 67 ~eisk~l~~~Wk~ls~eeK~~Y~~~ 91 (133)
..+.......+..|++++|..|..+
T Consensus 75 ~~~~~~~~~~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 75 EERAKAQHALYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 4566777889999999999988764
No 51
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=25.33 E-value=1.4e+02 Score=20.41 Aligned_cols=30 Identities=20% Similarity=0.092 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhCCChHHhHHHHHHHHHH
Q 032803 66 VAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (133)
Q Consensus 66 ~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~ 95 (133)
+.-+++.+++.++.|+.+-|+.|.++...-
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~f 74 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLLF 74 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHC
Confidence 456777789999999999999999988753
No 52
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=24.96 E-value=2.2e+02 Score=23.67 Aligned_cols=41 Identities=7% Similarity=-0.056 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 68 eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
+.++..-..|+.++..+|..+...+....+.+..++.....
T Consensus 5 ~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~ 45 (434)
T cd07133 5 ERQKAAFLANPPPSLEERRDRLDRLKALLLDNQDALAEAIS 45 (434)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667899999999999999998988888888887654
No 53
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=24.34 E-value=2.2e+02 Score=23.88 Aligned_cols=41 Identities=5% Similarity=0.112 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 68 eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
+.++..-..|..++..+|..+...+....+.+..++.....
T Consensus 6 ~~A~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~eela~~~~ 46 (436)
T cd07122 6 ERARKAQREFATFSQEQVDKIVEAVAWAAADAAEELAKMAV 46 (436)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566799999999999999988888888888877654
No 54
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=24.05 E-value=2.1e+02 Score=23.81 Aligned_cols=42 Identities=7% Similarity=-0.074 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 68 eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
+.++..-..|+.++..+|..+...+....+.+..++..-...
T Consensus 5 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~ 46 (443)
T cd07132 5 RRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEALAK 46 (443)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445666678999999999999999888888888888776653
No 55
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=23.73 E-value=1.8e+02 Score=24.39 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHH
Q 032803 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91 (133)
Q Consensus 49 ~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~ 91 (133)
-+..|...++-||+.....+..+.|.+.|..|++.+|....+.
T Consensus 46 KkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 46 KKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 3455666678899932345788899999999998886554443
No 56
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=23.71 E-value=4.1e+02 Score=22.35 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHH--HHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 032803 42 ASAFFVFMEEFRE--QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (133)
Q Consensus 42 ~say~lF~~e~r~--~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~ 110 (133)
-+||+||.+-.-= +-...||+ . ..+-...-...+.|-++.-..-.++..++..+|..+..+|....
T Consensus 52 enafvLy~ry~tLfiEkipkHrD-y--~s~k~ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K 119 (424)
T KOG2880|consen 52 ENAFVLYLRYITLFIEKIPKHRD-Y--RSVKPEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSK 119 (424)
T ss_pred chhhhHHHHHHHHHHHhcccCcc-h--hhhchhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3677776543311 11234665 2 23333333344444466666666777888888888888887654
No 57
>PF15581 Imm35: Immunity protein 35
Probab=23.08 E-value=90 Score=20.71 Aligned_cols=22 Identities=9% Similarity=0.335 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHhhCCChHHhH
Q 032803 65 SVAAVGKAGGEKWKSMSEADKA 86 (133)
Q Consensus 65 ~~~eisk~l~~~Wk~ls~eeK~ 86 (133)
+..-+...|...|+-|++++=.
T Consensus 31 ~i~~l~~lIe~eWRGl~~~qV~ 52 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEEQVL 52 (93)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH
Confidence 4556788999999999987753
No 58
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=22.72 E-value=87 Score=20.65 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=16.4
Q ss_pred HhhCCChHHhHHHHHHHHHHH
Q 032803 76 KWKSMSEADKAPYVAKAEKRK 96 (133)
Q Consensus 76 ~Wk~ls~eeK~~Y~~~a~~~k 96 (133)
-|..|++.+|..+.+.+....
T Consensus 60 py~~L~e~eK~~dr~~~~e~l 80 (94)
T PF02026_consen 60 PYDELSEEEKEKDRDMVRETL 80 (94)
T ss_dssp -GGGS-HHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHhHHHHHHHH
Confidence 399999999999998887654
No 59
>PRK14291 chaperone protein DnaJ; Provisional
Probab=22.55 E-value=1.9e+02 Score=23.83 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhCCChHHhHHHHH
Q 032803 51 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVA 90 (133)
Q Consensus 51 e~r~~~k~~~p~~~~----~~eisk~l~~~Wk~ls~eeK~~Y~~ 90 (133)
..|...+.-||+ .+ ..+..+.|.+.|..|++.+|..-.+
T Consensus 23 ayr~la~~~HPD-~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD 65 (382)
T PRK14291 23 AYRRLARKYHPD-FNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65 (382)
T ss_pred HHHHHHHHHCCC-CCCCccHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 445556677888 43 4577789999999999887654333
No 60
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=22.17 E-value=48 Score=21.04 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHhhCCChHHh------HHHHHHHH-HHHHHHHHHHHHHHHhCCC
Q 032803 64 KSVAAVGKAGGEKWKSMSEADK------APYVAKAE-KRKVEYEKDMKNYNRRQAE 112 (133)
Q Consensus 64 ~~~~eisk~l~~~Wk~ls~eeK------~~Y~~~a~-~~k~~y~~e~~~y~~~~~~ 112 (133)
..+..|+..||.-|..|-..=- ..+..... ...++-..-+..|..+...
T Consensus 5 ~~l~~ia~~lG~dW~~LAr~Lg~~~~dI~~i~~~~~~~~~eq~~~mL~~W~~r~g~ 60 (84)
T cd08317 5 IRLADISNLLGSDWPQLARELGVSETDIDLIKAENPNSLAQQAQAMLKLWLEREGK 60 (84)
T ss_pred chHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 6788999999999987653322 22221111 0123344556677776543
No 61
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=22.09 E-value=1.8e+02 Score=20.99 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=32.4
Q ss_pred HHhhCCChHHhHHHHHHH---HHHHHHHHHHHHHHHHhCCCCCC
Q 032803 75 EKWKSMSEADKAPYVAKA---EKRKVEYEKDMKNYNRRQAEGTK 115 (133)
Q Consensus 75 ~~Wk~ls~eeK~~Y~~~a---~~~k~~y~~e~~~y~~~~~~~~~ 115 (133)
..|..||.+||+...+.. ..+.+.|...+...-..++..+.
T Consensus 33 ~~W~~l~~~eRq~Lv~~pc~t~~ei~~yr~~L~~li~~~~~~~~ 76 (144)
T PF09655_consen 33 SHWQQLSQEERQQLVDLPCDTPEEIQNYREFLQELIRTHAGGPA 76 (144)
T ss_pred HHHhcCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 579999999999998865 45566888888888877765554
No 62
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=21.67 E-value=61 Score=20.37 Aligned_cols=21 Identities=14% Similarity=0.567 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCcHHHHHHHH
Q 032803 31 AAKDPNKPKRPASAFFVFMEE 51 (133)
Q Consensus 31 ~~~dp~~PKrP~say~lF~~e 51 (133)
+...|+.|--||.-||++++.
T Consensus 25 r~~K~GfpdepmrE~ml~l~~ 45 (75)
T PF15076_consen 25 RPRKPGFPDEPMREYMLHLQA 45 (75)
T ss_pred CCCCCCCCcchHHHHHHHHHH
Confidence 445688999999999999863
No 63
>PRK14296 chaperone protein DnaJ; Provisional
Probab=21.66 E-value=1.9e+02 Score=23.71 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhCCChHHhHHHHH
Q 032803 51 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVA 90 (133)
Q Consensus 51 e~r~~~k~~~p~~~~----~~eisk~l~~~Wk~ls~eeK~~Y~~ 90 (133)
..|...++-||+ .+ ..+..+.|.+.|..|++.+|..-.+
T Consensus 24 ayrkla~~~HPD-~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD 66 (372)
T PRK14296 24 AYRKLAKQYHPD-LNKSPDAHDKMVEINEAADVLLDKDKRKQYD 66 (372)
T ss_pred HHHHHHHHHCcC-CCCCchHHHHHHHHHHHHHHhcCHHHhhhhh
Confidence 344555667887 43 4467788999999999888654444
No 64
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=21.55 E-value=2.6e+02 Score=23.10 Aligned_cols=42 Identities=12% Similarity=-0.095 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 68 eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
+.++..-..|..++..+|..+...+....+.+..++......
T Consensus 5 ~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~ 46 (426)
T cd07087 5 ARLRETFLTGKTRSLEWRKAQLKALKRMLTENEEEIAAALYA 46 (426)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345556677999999999999999988888888888766543
No 65
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=21.15 E-value=2.8e+02 Score=23.25 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=30.1
Q ss_pred HHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032803 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (133)
Q Consensus 70 sk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (133)
++.....|+.++..+|..+...+......+..++..-.
T Consensus 47 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~ 84 (478)
T cd07085 47 AKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELARLI 84 (478)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455679999999999999988888888877776543
No 66
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=20.82 E-value=2.3e+02 Score=21.57 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhCCChHHhHHHHHHHHHHH
Q 032803 67 AAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96 (133)
Q Consensus 67 ~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k 96 (133)
.+....|.+.+..|++++++...+.+...+
T Consensus 13 ~~e~~~L~~~k~~Ls~~e~~~i~~~~~~L~ 42 (248)
T PF08367_consen 13 EEEKEKLAAYKASLSEEEKEKIIEQTKELK 42 (248)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 467788999999999999999998888764
No 67
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=20.46 E-value=1.7e+02 Score=16.13 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhCCC
Q 032803 51 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMS 81 (133)
Q Consensus 51 e~r~~~k~~~p~~~~----~~eisk~l~~~Wk~ls 81 (133)
..|..++.-||+... ..+....|...|..|+
T Consensus 20 ~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 20 AYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred HHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 345556667887332 3455666666666664
No 68
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=20.42 E-value=5.3 Score=35.29 Aligned_cols=44 Identities=16% Similarity=0.276 Sum_probs=39.7
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHh
Q 032803 41 PASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85 (133)
Q Consensus 41 P~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK 85 (133)
-+++|++|+.+.+..+...+|+ ..+.+++.+.|..|..|+...+
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~-v~~~~~~~~vg~~~~~lp~~~k 595 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPT-VGFGEVSIIVGNDWDKLPNINK 595 (629)
T ss_pred CCccccccccccCceeeeeCCC-cccceeEEeecCCcccCccccc
Confidence 5688999999999999999999 8999999999999999994444
No 69
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=20.34 E-value=2.6e+02 Score=22.17 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCC---CHHHHHHHHHHHhhCCChHHhHHHHH
Q 032803 51 EFREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEADKAPYVA 90 (133)
Q Consensus 51 e~r~~~k~~~p~~~---~~~eisk~l~~~Wk~ls~eeK~~Y~~ 90 (133)
..|...++-||+.. ...+..+.|.+.|..|++..+..-.+
T Consensus 24 ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD 66 (306)
T PRK10266 24 AYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66 (306)
T ss_pred HHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555567788821 26678889999999999776654333
No 70
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=20.25 E-value=1.1e+02 Score=18.74 Aligned_cols=19 Identities=11% Similarity=0.375 Sum_probs=15.1
Q ss_pred HHHHHhhCCChHHhHHHHH
Q 032803 72 AGGEKWKSMSEADKAPYVA 90 (133)
Q Consensus 72 ~l~~~Wk~ls~eeK~~Y~~ 90 (133)
.-+..|+.|++.+|+-+..
T Consensus 12 Qa~~ly~~l~~~er~~lv~ 30 (68)
T PF06628_consen 12 QARDLYRVLSDEERERLVE 30 (68)
T ss_dssp HHHHHHHHSSHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHH
Confidence 4567899999999987775
No 71
>PRK14279 chaperone protein DnaJ; Provisional
Probab=20.13 E-value=1.7e+02 Score=24.22 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCCC-----HHHHHHHHHHHhhCCChHHhHHHHHH
Q 032803 51 EFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEADKAPYVAK 91 (133)
Q Consensus 51 e~r~~~k~~~p~~~~-----~~eisk~l~~~Wk~ls~eeK~~Y~~~ 91 (133)
..|...++-||+ .+ ..+..+.|.+.|..|++.+|..-.+.
T Consensus 29 ayr~la~~~HPD-~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~ 73 (392)
T PRK14279 29 AYRKLARELHPD-ANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDE 73 (392)
T ss_pred HHHHHHHHHCcC-CCCCChHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 345556677888 42 34777899999999998887644443
No 72
>PHA03102 Small T antigen; Reviewed
Probab=20.09 E-value=1.8e+02 Score=21.04 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHh
Q 032803 50 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85 (133)
Q Consensus 50 ~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK 85 (133)
+..|..++.-|||.-...+..+.|.+.|..|++..+
T Consensus 26 kAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~ 61 (153)
T PHA03102 26 KAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVK 61 (153)
T ss_pred HHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHH
Confidence 345666677899843345667777777777776544
Done!