Query 032803
Match_columns 133
No_of_seqs 203 out of 1016
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 09:40:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 6.1E-27 2.1E-31 158.3 12.6 90 25-115 5-94 (102)
2 2eqz_A High mobility group pro 99.9 6.7E-26 2.3E-30 148.7 11.5 79 28-107 6-86 (86)
3 1k99_A Upstream binding factor 99.9 2.1E-26 7.1E-31 155.0 8.9 84 29-113 2-85 (99)
4 1cg7_A Protein (NON histone pr 99.9 3.4E-26 1.2E-30 152.2 5.5 83 27-110 10-92 (93)
5 1hme_A High mobility group pro 99.9 1E-25 3.5E-30 144.6 7.4 76 32-108 1-76 (77)
6 2crj_A SWI/SNF-related matrix- 99.9 5.7E-25 2E-29 145.9 10.7 77 32-109 2-78 (92)
7 2e6o_A HMG box-containing prot 99.9 2.7E-25 9.2E-30 146.1 8.6 77 30-107 10-86 (87)
8 2cs1_A PMS1 protein homolog 1; 99.9 4.6E-25 1.6E-29 146.4 9.6 80 33-113 3-82 (92)
9 1wgf_A Upstream binding factor 99.9 5.7E-26 2E-30 150.3 4.8 79 25-104 8-86 (90)
10 2lhj_A High mobility group pro 99.9 6E-26 2E-30 152.0 4.3 82 27-109 12-95 (97)
11 3nm9_A HMG-D, high mobility gr 99.9 2.6E-24 9E-29 137.0 9.7 72 35-109 1-72 (73)
12 1hry_A Human SRY; DNA, DNA-bin 99.9 8.3E-25 2.9E-29 140.0 6.7 73 34-107 1-73 (76)
13 1aab_A High mobility group pro 99.9 3.2E-25 1.1E-29 144.3 4.4 77 32-109 2-80 (83)
14 1wxl_A Single-strand recogniti 99.9 4E-24 1.4E-28 136.1 7.6 72 35-109 1-72 (73)
15 1j46_A SRY, sex-determining re 99.9 9.9E-24 3.4E-28 138.0 8.6 75 34-109 1-75 (85)
16 1ckt_A High mobility group 1 p 99.9 8.9E-24 3.1E-28 133.5 7.8 69 37-106 1-71 (71)
17 2gzk_A Sex-determining region 99.9 2.7E-23 9.2E-28 149.7 11.1 79 29-108 80-158 (159)
18 4a3n_A Transcription factor SO 99.9 6E-24 2E-28 134.1 6.5 71 36-107 1-71 (71)
19 1v64_A Nucleolar transcription 99.9 3E-23 1E-27 141.7 10.1 82 28-114 7-89 (108)
20 1wz6_A HMG-box transcription f 99.9 3.7E-24 1.3E-28 139.0 5.0 76 33-109 3-78 (82)
21 1gt0_D Transcription factor SO 99.9 2E-23 6.9E-28 134.8 7.9 73 36-109 1-73 (80)
22 3f27_D Transcription factor SO 99.9 1.6E-23 5.6E-28 136.0 7.5 74 34-108 3-76 (83)
23 4euw_A Transcription factor SO 99.9 2.3E-23 7.9E-28 141.7 8.4 77 31-108 23-99 (106)
24 2lef_A LEF-1 HMG, protein (lym 99.9 3.6E-23 1.2E-27 135.5 8.3 73 36-109 1-73 (86)
25 3u2b_C Transcription factor SO 99.9 2.8E-23 9.5E-28 133.7 7.1 72 36-108 1-72 (79)
26 2yrq_A High mobility group pro 99.9 1.6E-22 5.6E-27 147.6 10.9 80 29-109 93-172 (173)
27 1i11_A Transcription factor SO 99.9 3.8E-23 1.3E-27 133.9 6.4 73 35-108 2-74 (81)
28 3fgh_A Transcription factor A, 99.9 5.9E-23 2E-27 128.6 6.8 66 36-106 1-66 (67)
29 1l8y_A Upstream binding factor 99.9 2.1E-22 7E-27 133.5 9.3 75 36-112 3-77 (91)
30 1v63_A Nucleolar transcription 99.9 5.9E-22 2E-26 133.7 9.8 81 33-116 4-84 (101)
31 2yrq_A High mobility group pro 99.9 1.2E-21 4E-26 143.1 10.6 82 29-110 7-89 (173)
32 2d7l_A WD repeat and HMG-box D 99.9 8.1E-22 2.8E-26 128.2 6.7 61 34-95 2-63 (81)
33 3tmm_A Transcription factor A, 99.8 4.6E-21 1.6E-25 146.7 8.6 81 32-113 36-116 (238)
34 3tq6_A Transcription factor A, 99.8 8.8E-21 3E-25 143.1 9.6 79 34-113 6-84 (214)
35 2cto_A Novel protein; high mob 99.8 6E-21 2E-25 127.1 4.8 69 32-103 5-76 (93)
36 2yuk_A Myeloid/lymphoid or mix 99.8 9.4E-22 3.2E-26 130.2 0.1 69 29-102 14-84 (90)
37 3tq6_A Transcription factor A, 99.8 1.4E-21 4.9E-26 147.4 -0.6 82 29-115 106-187 (214)
38 3tmm_A Transcription factor A, 99.8 2.7E-21 9.1E-26 148.0 -1.0 82 29-115 138-219 (238)
39 2gzk_A Sex-determining region 99.8 1.6E-18 5.4E-23 124.7 7.9 73 35-108 2-74 (159)
40 2qgu_A Probable signal peptide 77.8 1.9 6.6E-05 31.5 3.4 46 64-109 72-119 (211)
41 3o39_A Periplasmic protein rel 35.7 51 0.0017 21.5 4.0 27 68-94 79-105 (108)
42 2yua_A Williams-beuren syndrom 35.6 79 0.0027 19.6 5.1 37 50-86 36-76 (99)
43 3itf_A Periplasmic adaptor pro 30.9 84 0.0029 21.4 4.7 31 69-99 108-138 (145)
44 1j1d_B Troponin T, TNT; THIN f 29.6 1.2E+02 0.004 19.7 5.4 52 47-101 28-79 (106)
45 2o37_A Protein SIS1; HSP40, J- 28.5 86 0.0029 19.1 4.1 38 50-87 27-65 (92)
46 2dn9_A DNAJ homolog subfamily 23.1 81 0.0028 18.4 3.2 35 51-85 27-65 (79)
47 2ctw_A DNAJ homolog subfamily 22.9 1.1E+02 0.0037 19.4 3.9 50 40-89 15-80 (109)
48 2och_A Hypothetical protein DN 22.0 1.2E+02 0.0042 17.4 4.0 36 51-86 28-64 (73)
49 1hdj_A Human HSP40, HDJ-1; mol 21.8 1.3E+02 0.0043 17.5 4.9 36 51-86 23-61 (77)
50 3u65_B TP33 protein; tetratric 21.5 1.5E+02 0.0052 22.4 5.1 22 75-96 235-256 (328)
51 3mhp_C TIC62_peptide, ferredox 21.1 9.9 0.00034 18.6 -1.1 11 38-48 2-12 (26)
52 3nm8_A Tyrosinase; TYPE3 coppe 21.0 75 0.0026 24.4 3.3 23 75-97 9-31 (303)
53 2cug_A Mkiaa0962 protein; DNAJ 21.0 1.3E+02 0.0045 18.0 3.9 46 40-85 15-74 (88)
54 2nqb_D Histone H2B; nucleosome 20.4 65 0.0022 21.6 2.4 17 43-62 33-49 (123)
55 2ys8_A RAB-related GTP-binding 20.0 98 0.0034 18.8 3.1 32 52-83 48-82 (90)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.95 E-value=6.1e-27 Score=158.30 Aligned_cols=90 Identities=28% Similarity=0.493 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHH
Q 032803 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (133)
Q Consensus 25 ~kk~~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~ 104 (133)
..+++++.+||++|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|+++|..++++|..+|.
T Consensus 5 ~~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 83 (102)
T 2co9_A 5 SSGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLA 83 (102)
T ss_dssp CCCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667899999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCC
Q 032803 105 NYNRRQAEGTK 115 (133)
Q Consensus 105 ~y~~~~~~~~~ 115 (133)
.|+..+.....
T Consensus 84 ~Y~~~~~~~~~ 94 (102)
T 2co9_A 84 AYRASLVSKSY 94 (102)
T ss_dssp HHHHHHTSSCC
T ss_pred HHHhhcccccc
Confidence 99998877655
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=6.7e-26 Score=148.65 Aligned_cols=79 Identities=39% Similarity=0.671 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHH
Q 032803 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (133)
Q Consensus 28 ~~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~--~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~ 105 (133)
+++..+||++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|+.|++++|++|+++|..++++|..+|..
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPE-VPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTT-SCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556899999999999999999999999999999 64 7999999999999999999999999999999999999999
Q ss_pred HH
Q 032803 106 YN 107 (133)
Q Consensus 106 y~ 107 (133)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 94
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.93 E-value=2.1e-26 Score=155.03 Aligned_cols=84 Identities=29% Similarity=0.534 Sum_probs=79.7
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
+++.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..+|..|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hCCCC
Q 032803 109 RQAEG 113 (133)
Q Consensus 109 ~~~~~ 113 (133)
..++-
T Consensus 81 ~~P~~ 85 (99)
T 1k99_A 81 DHPDL 85 (99)
T ss_dssp CCCCC
T ss_pred HCCCc
Confidence 87653
No 4
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.92 E-value=3.4e-26 Score=152.21 Aligned_cols=83 Identities=39% Similarity=0.687 Sum_probs=78.5
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 032803 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (133)
Q Consensus 27 k~~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y 106 (133)
++++..+||+.|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..+|..|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHhC
Q 032803 107 NRRQ 110 (133)
Q Consensus 107 ~~~~ 110 (133)
..+.
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 9764
No 5
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.92 E-value=1e-25 Score=144.64 Aligned_cols=76 Identities=49% Similarity=0.819 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
++||++|+||+|||||||+++|..|+..||+ +++.+|+++||++|+.||+++|++|.++|..++.+|..+|..|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3699999999999999999999999999999 999999999999999999999999999999999999999999974
No 6
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.92 E-value=5.7e-25 Score=145.93 Aligned_cols=77 Identities=30% Similarity=0.591 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..+|..|+..
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 78 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQS 78 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3699999999999999999999999999999 9999999999999999999999999999999999999999999874
No 7
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=146.12 Aligned_cols=77 Identities=29% Similarity=0.486 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032803 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (133)
Q Consensus 30 k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (133)
+..+||++|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|+++|..++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 456799999999999999999999999999999 99999999999999999999999999999999999999998874
No 8
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=4.6e-25 Score=146.40 Aligned_cols=80 Identities=29% Similarity=0.425 Sum_probs=76.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 032803 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112 (133)
Q Consensus 33 ~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~~ 112 (133)
.+|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..+|..|..++..
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999999 8999999999999999999999999999999999999999999998765
Q ss_pred C
Q 032803 113 G 113 (133)
Q Consensus 113 ~ 113 (133)
.
T Consensus 82 ~ 82 (92)
T 2cs1_A 82 M 82 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.92 E-value=5.7e-26 Score=150.29 Aligned_cols=79 Identities=30% Similarity=0.479 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHH
Q 032803 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (133)
Q Consensus 25 ~kk~~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~ 104 (133)
+++++++.+||++|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|+++|..++++|..+|.
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667899999999999999999999999999999 99999999999999999999999999999999999987664
No 10
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.92 E-value=6e-26 Score=152.02 Aligned_cols=82 Identities=37% Similarity=0.713 Sum_probs=77.6
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHH
Q 032803 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (133)
Q Consensus 27 k~~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~--~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~ 104 (133)
++++..+||++|+||+|||||||+++|..|+.+||+ ++ +.+|+++||++|+.||+++|++|+++|..++++|..+|.
T Consensus 12 ~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 90 (97)
T 2lhj_A 12 RPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPE-IAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKA 90 (97)
T ss_dssp CTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTT-STTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999 88 999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 032803 105 NYNRR 109 (133)
Q Consensus 105 ~y~~~ 109 (133)
.|+.+
T Consensus 91 ~y~~~ 95 (97)
T 2lhj_A 91 EYAQR 95 (97)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 11
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.91 E-value=2.6e-24 Score=136.95 Aligned_cols=72 Identities=38% Similarity=0.733 Sum_probs=69.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
.++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++ |++|.++|..++++|..+|++|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999 8999999999999999998 9999999999999999999999874
No 12
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.91 E-value=8.3e-25 Score=140.03 Aligned_cols=73 Identities=27% Similarity=0.520 Sum_probs=69.4
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032803 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (133)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (133)
||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..++.+|+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 73 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 68999999999999999999999999999 89999999999999999999999999999999999999999885
No 13
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.91 E-value=3.2e-25 Score=144.34 Aligned_cols=77 Identities=35% Similarity=0.620 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~--~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
++||++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|+.||+++|++|.++|..++++|..+|..|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTT-TCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999999999999999999999 64 59999999999999999999999999999999999999999764
No 14
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.90 E-value=4e-24 Score=136.14 Aligned_cols=72 Identities=35% Similarity=0.714 Sum_probs=69.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.| ++|++|.++|..++++|..+|..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7899999999999999999999999999 99999999999999999 999999999999999999999999863
No 15
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.90 E-value=9.9e-24 Score=137.99 Aligned_cols=75 Identities=28% Similarity=0.519 Sum_probs=72.1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
.|+.|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..++.+|+-.
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 75 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 37899999999999999999999999999 8999999999999999999999999999999999999999999754
No 16
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.90 E-value=8.9e-24 Score=133.47 Aligned_cols=69 Identities=36% Similarity=0.667 Sum_probs=66.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 032803 37 KPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (133)
Q Consensus 37 ~PKrP~say~lF~~e~r~~~k~~~p~~~~--~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y 106 (133)
+||||+|||+|||+++|..|+.+||+ ++ +.+|+++||++|+.||+++|++|.++|..++++|..+|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTT-CCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999 64 69999999999999999999999999999999999999876
No 17
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.90 E-value=2.7e-23 Score=149.73 Aligned_cols=79 Identities=48% Similarity=0.795 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
+++.+||+.||||+|||+|||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..+|.+|+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999 999999999999999999999999999999999999999999985
No 18
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.90 E-value=6e-24 Score=134.08 Aligned_cols=71 Identities=31% Similarity=0.597 Sum_probs=63.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032803 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (133)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (133)
+.||||+|||||||+++|..|+..||+ +++.+|+++||++|+.||+++|++|.++|..++++|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 579999999999999999999999999 89999999999999999999999999999999999999999885
No 19
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=3e-23 Score=141.67 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=75.3
Q ss_pred CCCCCCCCCCC-CCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 032803 28 SGKAAKDPNKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (133)
Q Consensus 28 ~~k~~~dp~~P-KrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y 106 (133)
+.++.+|+++| |||+|||+|||+++|..|+ + +++.+|+++||++|+.|++++|++|.++|..++++|..+|..|
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~-~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y 81 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----D-VPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRF 81 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----T-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556799999 9999999999999999886 5 8999999999999999999999999999999999999999999
Q ss_pred HHhCCCCC
Q 032803 107 NRRQAEGT 114 (133)
Q Consensus 107 ~~~~~~~~ 114 (133)
...+.+.+
T Consensus 82 ~~~~~~~~ 89 (108)
T 1v64_A 82 LESLPEEE 89 (108)
T ss_dssp HHHSCHHH
T ss_pred HhhCCHHH
Confidence 99886544
No 20
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.89 E-value=3.7e-24 Score=139.01 Aligned_cols=76 Identities=21% Similarity=0.418 Sum_probs=72.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 33 ~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
.++++|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..+|.+|+..
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 478999999999999999999999999999 8999999999999999999999999999999999999999988753
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.89 E-value=2e-23 Score=134.83 Aligned_cols=73 Identities=29% Similarity=0.574 Sum_probs=70.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
+.|+||+|||||||+++|..|+..||+ +++.+|+++||++|+.||+++|++|.++|..++++|..+|++|+-.
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYR 73 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 479999999999999999999999999 9999999999999999999999999999999999999999999753
No 22
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.89 E-value=1.6e-23 Score=136.05 Aligned_cols=74 Identities=30% Similarity=0.559 Sum_probs=68.3
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
.++.|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..++++|+-
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 76 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKY 76 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 46789999999999999999999999999 899999999999999999999999999999999999999999863
No 23
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=141.66 Aligned_cols=77 Identities=30% Similarity=0.564 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 31 ~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
..++++.|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..++++|+-
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky 99 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKY 99 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 35688999999999999999999999999999 999999999999999999999999999999999999999999964
No 24
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=3.6e-23 Score=135.50 Aligned_cols=73 Identities=25% Similarity=0.438 Sum_probs=70.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032803 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (133)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (133)
+.|+||+|||||||+++|..|..+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..+|++|...
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSAR 73 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 479999999999999999999999999 8999999999999999999999999999999999999999999853
No 25
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=2.8e-23 Score=133.71 Aligned_cols=72 Identities=28% Similarity=0.545 Sum_probs=69.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
+.||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..++++|+-
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky 72 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPD-MHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKY 72 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 579999999999999999999999999 999999999999999999999999999999999999999999863
No 26
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=147.61 Aligned_cols=80 Identities=48% Similarity=0.796 Sum_probs=76.2
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
+++.+||++|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..+|.+|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456799999999999999999999999999999 999999999999999999999999999999999999999999986
Q ss_pred h
Q 032803 109 R 109 (133)
Q Consensus 109 ~ 109 (133)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 4
No 27
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=3.8e-23 Score=133.90 Aligned_cols=73 Identities=23% Similarity=0.467 Sum_probs=68.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
++.|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++.+|..++++|+-
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky 74 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKY 74 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 4789999999999999999999999999 899999999999999999999999999999999999999998874
No 28
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.88 E-value=5.9e-23 Score=128.58 Aligned_cols=66 Identities=35% Similarity=0.633 Sum_probs=62.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 032803 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (133)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y 106 (133)
|+||||+|||+|||+++|..|+..|| .+|+++||++|+.||+++|++|.++|..++++|..+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999976655 5999999999999999999999999999999999999988
No 29
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.88 E-value=2.1e-22 Score=133.49 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=72.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 032803 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112 (133)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~~ 112 (133)
+.|+||+|||+||++++|..++..+|+ ++++|++.||++|++|++++|++|+++|..++++|..+|..|+.....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 689999999999999999999999998 799999999999999999999999999999999999999999987665
No 30
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=5.9e-22 Score=133.71 Aligned_cols=81 Identities=15% Similarity=0.297 Sum_probs=71.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 032803 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112 (133)
Q Consensus 33 ~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~~ 112 (133)
....+||||+|||||||++++. ...+++ +++.+|+++||++|+.|++++|++|+++|..++++|..+|..|...+..
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~-~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNH-LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 3567999999999999999964 234555 7899999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 032803 113 GTKP 116 (133)
Q Consensus 113 ~~~~ 116 (133)
.+..
T Consensus 81 ~~~~ 84 (101)
T 1v63_A 81 QDRA 84 (101)
T ss_dssp THHH
T ss_pred HHHH
Confidence 6653
No 31
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=143.08 Aligned_cols=82 Identities=33% Similarity=0.608 Sum_probs=76.6
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032803 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (133)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~-~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~ 107 (133)
+....||++|+||+|||+|||+++|..|+..||+. +++.+|+++||++|+.||+++|++|+++|..++++|..+|..|.
T Consensus 7 k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 86 (173)
T 2yrq_A 7 GMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 86 (173)
T ss_dssp SSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 35568999999999999999999999999999994 48999999999999999999999999999999999999999998
Q ss_pred HhC
Q 032803 108 RRQ 110 (133)
Q Consensus 108 ~~~ 110 (133)
...
T Consensus 87 ~~~ 89 (173)
T 2yrq_A 87 PPK 89 (173)
T ss_dssp CCC
T ss_pred hhh
Confidence 654
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.1e-22 Score=128.23 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=58.9
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhCCChHHhHHHHHHHHHH
Q 032803 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (133)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~-~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~ 95 (133)
+++.||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|+.|++++|++|+++|..+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~-~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPD-FSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTT-CCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999 87 999999999999999999999999999886
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.84 E-value=4.6e-21 Score=146.71 Aligned_cols=81 Identities=15% Similarity=0.368 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 032803 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (133)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~ 111 (133)
..+|++||||+|||+|||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|+++|..++++|..+|..|...++
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~ 114 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLT 114 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5689999999999999999999999999999 899999999999999999999999999999999999999999998876
Q ss_pred CC
Q 032803 112 EG 113 (133)
Q Consensus 112 ~~ 113 (133)
..
T Consensus 115 p~ 116 (238)
T 3tmm_A 115 PS 116 (238)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 34
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.84 E-value=8.8e-21 Score=143.08 Aligned_cols=79 Identities=15% Similarity=0.379 Sum_probs=75.4
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 032803 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 113 (133)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~~~~~~ 113 (133)
.|++||||+|||+|||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|+++|..++++|..+|..|...++..
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~ 84 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPS 84 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHH
Confidence 47899999999999999999999999999 89999999999999999999999999999999999999999999887643
No 35
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6e-21 Score=127.12 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=64.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHhhCCChHHhHHHHHHHHHHHHHHHHHH
Q 032803 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG---GEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (133)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l---~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~ 103 (133)
..++++||||+|||||||+++|..|+.+ + +++.+|+++| |++|+.|+++||++|+++|..+++.|..++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~-~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--G-LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--T-CCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 3578999999999999999999999988 5 7889999999 999999999999999999999999998876
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.82 E-value=9.4e-22 Score=130.18 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHH
Q 032803 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102 (133)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~--~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e 102 (133)
.+..+||++||||+|||||||+++|..|+.+||+ ++ +.+|+ ++|+.|++++|++|+++|..+++.|...
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4455699999999999999999999999999999 88 88887 9999999999999999999999999753
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.81 E-value=1.4e-21 Score=147.39 Aligned_cols=82 Identities=30% Similarity=0.500 Sum_probs=73.3
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
++..+||+.||||+|||+|||+++|..|+..+| .+|+++||++|++|++++|++|.++|..++++|..+|.+|..
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999998865544 499999999999999999999999999999999999999999
Q ss_pred hCCCCCC
Q 032803 109 RQAEGTK 115 (133)
Q Consensus 109 ~~~~~~~ 115 (133)
++.+...
T Consensus 181 ~~~~~~~ 187 (214)
T 3tq6_A 181 QMIEVGR 187 (214)
T ss_dssp HHHHTTB
T ss_pred hCccccc
Confidence 9855433
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.80 E-value=2.7e-21 Score=148.01 Aligned_cols=82 Identities=30% Similarity=0.500 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
++..+||+.||||+|||+|||+++|..|+..|| .+|+++||++|++|++++|++|+++|..++++|..+|..|+.
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999998865554 499999999999999999999999999999999999999999
Q ss_pred hCCCCCC
Q 032803 109 RQAEGTK 115 (133)
Q Consensus 109 ~~~~~~~ 115 (133)
++.+...
T Consensus 213 k~~~~~~ 219 (238)
T 3tmm_A 213 QMIEVGR 219 (238)
T ss_dssp HHHHTTC
T ss_pred hCccccc
Confidence 9855443
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.76 E-value=1.6e-18 Score=124.67 Aligned_cols=73 Identities=27% Similarity=0.525 Sum_probs=70.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032803 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (133)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (133)
++.|+||+||||||+.+.|..|..+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..+|..|..
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 74 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 6789999999999999999999999999 999999999999999999999999999999999999999999964
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=77.76 E-value=1.9 Score=31.49 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=36.7
Q ss_pred CCHHHHHHH-HHHHhhCCChHHhHHHHHHHHHH-HHHHHHHHHHHHHh
Q 032803 64 KSVAAVGKA-GGEKWKSMSEADKAPYVAKAEKR-KVEYEKDMKNYNRR 109 (133)
Q Consensus 64 ~~~~eisk~-l~~~Wk~ls~eeK~~Y~~~a~~~-k~~y~~e~~~y~~~ 109 (133)
..+..+++. ||..|+.+|+++++.|.+..... ...|-..+..|...
T Consensus 72 ~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 72 ADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp BCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred cCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 456666654 58999999999999999988875 55688888888753
No 41
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=35.69 E-value=51 Score=21.45 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhCCChHHhHHHHHHHHH
Q 032803 68 AVGKAGGEKWKSMSEADKAPYVAKAEK 94 (133)
Q Consensus 68 eisk~l~~~Wk~ls~eeK~~Y~~~a~~ 94 (133)
+.++.-..++..|++++|..|.+..++
T Consensus 79 ~~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 79 AHMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 345556789999999999999886553
No 42
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.60 E-value=79 Score=19.59 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhhCCChHHhH
Q 032803 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKA 86 (133)
Q Consensus 50 ~e~r~~~k~~~p~~~~----~~eisk~l~~~Wk~ls~eeK~ 86 (133)
+..|..++.-||+... ..+....|.+.|..|++..+.
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R 76 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 3445566778898321 367888999999999977653
No 43
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=30.90 E-value=84 Score=21.45 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=23.0
Q ss_pred HHHHHHHHhhCCChHHhHHHHHHHHHHHHHH
Q 032803 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99 (133)
Q Consensus 69 isk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y 99 (133)
.++.-.+++..|++++|..|.+...+....+
T Consensus 108 r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~ 138 (145)
T 3itf_A 108 MAKVRNQMYRLLTPEQQAVLNEKHQQRMEQL 138 (145)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 3455568899999999999998766654443
No 44
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=29.55 E-value=1.2e+02 Score=19.72 Aligned_cols=52 Identities=12% Similarity=0.233 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhCCChHHhHHHHHHHHHHHHHHHH
Q 032803 47 VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101 (133)
Q Consensus 47 lF~~e~r~~~k~~~p~~~~~~eisk~l~~~Wk~ls~eeK~~Y~~~a~~~k~~y~~ 101 (133)
-|+.+.+.-+ ..++ ++..++..+|-+.|..+..-+=..|.-.+...+..|..
T Consensus 28 kiLaER~kpL--~id~-l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI 79 (106)
T 1j1d_B 28 KILAERRKVL--AIDH-LNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEI 79 (106)
T ss_dssp HHHHHHHHHH--HHTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC--CCCC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHH
Confidence 3566666555 2334 78889999999999988877778898888888877753
No 45
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=28.51 E-value=86 Score=19.13 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhhCCChHHhHH
Q 032803 50 EEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAP 87 (133)
Q Consensus 50 ~e~r~~~k~~~p~~~-~~~eisk~l~~~Wk~ls~eeK~~ 87 (133)
+..|..++.-||+.. ...+..+.|.+.|..|++..+..
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE 65 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHH
Confidence 344556677899832 34578889999999988766543
No 46
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.12 E-value=81 Score=18.44 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCCC----CHHHHHHHHHHHhhCCChHHh
Q 032803 51 EFREQYKKDHPKNK----SVAAVGKAGGEKWKSMSEADK 85 (133)
Q Consensus 51 e~r~~~k~~~p~~~----~~~eisk~l~~~Wk~ls~eeK 85 (133)
..|..++.-||+.. ...+....|.+.|..|++..+
T Consensus 27 ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 65 (79)
T 2dn9_A 27 AYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 65 (79)
T ss_dssp HHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 34555667788832 135677888888888876554
No 47
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.94 E-value=1.1e+02 Score=19.37 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=32.6
Q ss_pred CCCcHHHHH-----------HHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhCCChHHhH-HHH
Q 032803 40 RPASAFFVF-----------MEEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKA-PYV 89 (133)
Q Consensus 40 rP~say~lF-----------~~e~r~~~k~~~p~~~~----~~eisk~l~~~Wk~ls~eeK~-~Y~ 89 (133)
...++|-++ -+..|..++.-||+... ..+....|.+.|..|++..+. .|.
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 80 (109)
T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYD 80 (109)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 345677765 23445566778898322 257788999999998866554 444
No 48
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=22.04 E-value=1.2e+02 Score=17.37 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHhhCCChHHhH
Q 032803 51 EFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKA 86 (133)
Q Consensus 51 e~r~~~k~~~p~~~-~~~eisk~l~~~Wk~ls~eeK~ 86 (133)
..|..++.-||+.. ...+....|.+.|..|++..+.
T Consensus 28 ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 28 AYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp HHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHH
Confidence 34555667789832 2247788899999988866553
No 49
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=21.85 E-value=1.3e+02 Score=17.47 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCCC---CHHHHHHHHHHHhhCCChHHhH
Q 032803 51 EFREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEADKA 86 (133)
Q Consensus 51 e~r~~~k~~~p~~~---~~~eisk~l~~~Wk~ls~eeK~ 86 (133)
..|..++.-||+.. ...+....|.+.|..|++..+.
T Consensus 23 ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R 61 (77)
T 1hdj_A 23 AYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp HHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHH
Confidence 34555666788832 3567888999999999876653
No 50
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=21.45 E-value=1.5e+02 Score=22.39 Aligned_cols=22 Identities=9% Similarity=0.303 Sum_probs=18.2
Q ss_pred HHhhCCChHHhHHHHHHHHHHH
Q 032803 75 EKWKSMSEADKAPYVAKAEKRK 96 (133)
Q Consensus 75 ~~Wk~ls~eeK~~Y~~~a~~~k 96 (133)
..|..||++.++...+.+.+..
T Consensus 235 ~~w~~L~~e~q~~i~~a~~e~~ 256 (328)
T 3u65_B 235 GSWARIPSRYHDAMLQAATRVR 256 (328)
T ss_dssp HHHTTSCGGGHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHH
Confidence 5799999999999988766543
No 51
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=21.05 E-value=9.9 Score=18.59 Aligned_cols=11 Identities=18% Similarity=0.600 Sum_probs=7.2
Q ss_pred CCCCCcHHHHH
Q 032803 38 PKRPASAFFVF 48 (133)
Q Consensus 38 PKrP~say~lF 48 (133)
..||+++|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 34777777654
No 52
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=21.03 E-value=75 Score=24.35 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=19.4
Q ss_pred HHhhCCChHHhHHHHHHHHHHHH
Q 032803 75 EKWKSMSEADKAPYVAKAEKRKV 97 (133)
Q Consensus 75 ~~Wk~ls~eeK~~Y~~~a~~~k~ 97 (133)
..|+.|+.+||..|.+....++.
T Consensus 9 ke~~~Ls~~Er~~yi~Av~~l~~ 31 (303)
T 3nm8_A 9 KNVLHLTDTEKRDFVRTVLILKE 31 (303)
T ss_dssp CBGGGCCHHHHHHHHHHHHHHHH
T ss_pred cchHHCCHHHHHHHHHHHHHHHh
Confidence 45999999999999987777654
No 53
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=20.98 E-value=1.3e+02 Score=18.00 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=30.3
Q ss_pred CCCcHHHHH-----------HHHHHHHHHHhCCCCC---CHHHHHHHHHHHhhCCChHHh
Q 032803 40 RPASAFFVF-----------MEEFREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEADK 85 (133)
Q Consensus 40 rP~say~lF-----------~~e~r~~~k~~~p~~~---~~~eisk~l~~~Wk~ls~eeK 85 (133)
...+.|-++ -+..|..++.-||+.. ...+....|.+.|..|++..+
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 74 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHH
Confidence 456777776 2334555666788832 256778888889988876554
No 54
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=20.44 E-value=65 Score=21.64 Aligned_cols=17 Identities=18% Similarity=0.550 Sum_probs=11.4
Q ss_pred cHHHHHHHHHHHHHHHhCCC
Q 032803 43 SAFFVFMEEFREQYKKDHPK 62 (133)
Q Consensus 43 say~lF~~e~r~~~k~~~p~ 62 (133)
..|.+|+--. +++-||+
T Consensus 33 esy~~YIyKV---LKQVhpd 49 (123)
T 2nqb_D 33 ESYAIYIYTV---LKQVHPD 49 (123)
T ss_dssp CCSHHHHHHH---HHHHCTT
T ss_pred chHHHHHHHH---HHHhCCC
Confidence 4577777544 5666998
No 55
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.04 E-value=98 Score=18.83 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=15.8
Q ss_pred HHHHHHHhCCCCC---CHHHHHHHHHHHhhCCChH
Q 032803 52 FREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEA 83 (133)
Q Consensus 52 ~r~~~k~~~p~~~---~~~eisk~l~~~Wk~ls~e 83 (133)
.|..++.-||+.. ...+....|.+.|..|++.
T Consensus 48 Yr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~ 82 (90)
T 2ys8_A 48 YRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKN 82 (90)
T ss_dssp HHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCc
Confidence 3444555667632 2344455555555555443
Done!