BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032804
         (133 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5N7P5|GLYA_CLOK5 Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain
           ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1
          Length = 411

 Score = 33.5 bits (75), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 21/86 (24%)

Query: 66  RKKNQLEMAGTDNNS------------------GRPGSRFSPGCFTEEKAKQL---RKKT 104
           R+KN +E+  ++N +                  G PG R+  GC+  +KA+ L   R K 
Sbjct: 23  RQKNGIELIASENFTSKSVMEAMGSFLTNKYAEGYPGKRYYGGCYIVDKAEDLARDRMKK 82

Query: 105 AESSSFHDVMYHSALASRLASDMSVL 130
             ++   +V  HS   + +A  MSVL
Sbjct: 83  LFNAEHVNVQPHSGSQANMAVYMSVL 108


>sp|B9E156|GLYA_CLOK1 Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain
           NBRC 12016) GN=glyA PE=3 SV=1
          Length = 411

 Score = 33.5 bits (75), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 21/86 (24%)

Query: 66  RKKNQLEMAGTDNNS------------------GRPGSRFSPGCFTEEKAKQL---RKKT 104
           R+KN +E+  ++N +                  G PG R+  GC+  +KA+ L   R K 
Sbjct: 23  RQKNGIELIASENFTSKSVMEAMGSFLTNKYAEGYPGKRYYGGCYIVDKAEDLARDRMKK 82

Query: 105 AESSSFHDVMYHSALASRLASDMSVL 130
             ++   +V  HS   + +A  MSVL
Sbjct: 83  LFNAEHVNVQPHSGSQANMAVYMSVL 108


>sp|Q97GV1|GLYA_CLOAB Serine hydroxymethyltransferase OS=Clostridium acetobutylicum
           (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
           B-1787) GN=glyA PE=3 SV=1
          Length = 411

 Score = 30.8 bits (68), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 21/88 (23%)

Query: 64  NNRKKNQLEMAGTDNNS------------------GRPGSRFSPGCFTEEKAKQLRKKTA 105
           N R++N +E+  ++N +                  G PG R+  GC+  +K ++L ++ A
Sbjct: 21  NARQENNIELIASENFTSKAVMEAMGSYLTNKYAEGYPGKRYYGGCYVVDKVEELARERA 80

Query: 106 E---SSSFHDVMYHSALASRLASDMSVL 130
           +    +   +V  HS   + +A   +VL
Sbjct: 81  KKLFKAEHANVQPHSGSQANMAVYFAVL 108


>sp|Q7N575|LUXA_PHOLL Alkanal monooxygenase alpha chain OS=Photorhabdus luminescens
           subsp. laumondii (strain TT01) GN=luxA PE=3 SV=1
          Length = 359

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 14/83 (16%)

Query: 4   ALIACSLSIPIRASSGSGYQEPESNRIK------PPSSSSSS-------SSSSSTNWWAP 50
           AL  C   + I+     GY E ++  IK       P++ S         + S+ST  WA 
Sbjct: 126 ALTECWYGL-IKNGMTEGYMEADNEHIKFHKVKVNPTAYSKGGAPVYVVAESASTTEWAA 184

Query: 51  LFGWSSDPGYLNNNNRKKNQLEM 73
            FG      ++ N N KK QLE+
Sbjct: 185 QFGLPMILSWIINTNEKKAQLEL 207


>sp|P19839|LUXA1_PHOLU Alkanal monooxygenase alpha chain OS=Photorhabdus luminescens
           GN=luxA PE=3 SV=1
          Length = 360

 Score = 30.0 bits (66), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 14/83 (16%)

Query: 4   ALIACSLSIPIRASSGSGYQEPESNRIK-------PPSSSSSSS------SSSSTNWWAP 50
           AL  C   + I+     GY E ++  IK       P + S   +       S+ST  WA 
Sbjct: 126 ALAECWYGL-IKNGMTEGYMEADNEHIKFHKVKVNPAAYSRGGAPVYVVAESASTTEWAA 184

Query: 51  LFGWSSDPGYLNNNNRKKNQLEM 73
            FG      ++ N N KK QLE+
Sbjct: 185 QFGLPMILSWIINTNEKKAQLEL 207


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.306    0.120    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,680,992
Number of Sequences: 539616
Number of extensions: 1976590
Number of successful extensions: 15964
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 13184
Number of HSP's gapped (non-prelim): 1667
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)