Query 032804
Match_columns 133
No_of_seqs 39 out of 41
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 09:41:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eab_A Spastin; spastin, MIT, 53.7 5.8 0.0002 27.9 1.7 17 92-108 62-78 (89)
2 3ui4_A Peptidyl-prolyl CIS-tra 42.6 17 0.00058 24.4 2.6 22 92-113 16-37 (101)
3 2lju_A Putative oxidoreductase 41.8 13 0.00045 26.8 2.0 19 45-63 43-61 (108)
4 2dl1_A Spartin; SPG20, MIT, st 40.5 12 0.00041 27.4 1.7 19 91-109 67-85 (116)
5 2rqs_A Parvulin-like peptidyl- 39.4 21 0.0007 23.4 2.6 21 93-113 19-39 (97)
6 1jns_A Peptidyl-prolyl CIS-tra 39.1 21 0.00071 23.1 2.5 21 93-113 13-33 (92)
7 1zk6_A Foldase protein PRSA; a 39.0 23 0.00077 22.8 2.7 21 93-113 14-34 (93)
8 2jya_A AGR_C_3324P, uncharacte 37.1 15 0.0005 26.5 1.6 19 45-63 35-53 (106)
9 2kgj_A Peptidyl-prolyl CIS-tra 29.8 38 0.0013 22.6 2.7 21 93-113 15-35 (102)
10 1nkz_B Light-harvesting protei 26.8 39 0.0013 20.8 2.1 16 91-106 2-17 (41)
11 1lgh_B LH II, B800/850, light 25.0 50 0.0017 20.7 2.4 17 90-106 6-22 (45)
12 3sjd_D Golgi to ER traffic pro 23.6 39 0.0013 21.5 1.7 12 93-104 16-27 (46)
13 4ayb_F DNA-directed RNA polyme 22.2 1.1E+02 0.0037 21.4 4.0 25 85-112 42-66 (113)
14 2voi_B BH3-interacting domain 21.6 66 0.0023 19.1 2.3 10 108-117 16-25 (34)
15 2pv1_A Chaperone SURA; surviVa 21.5 67 0.0023 20.9 2.7 21 93-113 24-44 (103)
16 2jzv_A Foldase protein PRSA; p 21.4 60 0.002 21.5 2.4 22 93-114 32-54 (111)
17 3zs9_C Golgi to ER traffic pro 21.1 48 0.0017 20.4 1.7 11 94-104 7-17 (38)
18 2ipr_A Large T antigen; DNA bi 20.9 47 0.0016 25.0 2.0 16 91-106 36-51 (133)
19 2l2l_B Methyl-CPG-binding doma 20.7 56 0.0019 19.8 1.9 14 94-107 16-29 (36)
20 2kbw_B BH3-interacting domain 20.1 76 0.0026 19.0 2.4 10 108-117 20-29 (35)
No 1
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=53.66 E-value=5.8 Score=27.94 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.3
Q ss_pred ccHHHHHHHHHHhhhcc
Q 032804 92 FTEEKAKQLRKKTAESS 108 (133)
Q Consensus 92 lTEEKAkqLR~~~~ete 108 (133)
-.-|+||||+.||.+|=
T Consensus 62 ~~we~Ar~LQ~KM~~nL 78 (89)
T 3eab_A 62 EQCERARRLQAKMMTNL 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44699999999999874
No 2
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A
Probab=42.55 E-value=17 Score=24.36 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHHhhhcchhHHH
Q 032804 92 FTEEKAKQLRKKTAESSSFHDV 113 (133)
Q Consensus 92 lTEEKAkqLR~~~~etesFHD~ 113 (133)
-++++|+++++++.+.++|-++
T Consensus 16 ~~~~~A~~i~~~l~~G~~F~~l 37 (101)
T 3ui4_A 16 EKHGKIMEAMEKLKSGMRFNEV 37 (101)
T ss_dssp SSHHHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHH
Confidence 3799999999999999999654
No 3
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=41.75 E-value=13 Score=26.80 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=15.9
Q ss_pred CcccccccCCCCCCCccCC
Q 032804 45 TNWWAPLFGWSSDPGYLNN 63 (133)
Q Consensus 45 ~~WWAPLFGWSs~pDYIda 63 (133)
.+|=-||.||.+..|.+..
T Consensus 43 ~r~~nPLMGWtsS~D~~~q 61 (108)
T 2lju_A 43 TQYTEPLMNWTGSHDTKQQ 61 (108)
T ss_dssp SCCCCCCCCCSSSCCCCCC
T ss_pred CCccCCCccccCCCCcccc
Confidence 4677899999999998754
No 4
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.46 E-value=12 Score=27.43 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHHhhhcch
Q 032804 91 CFTEEKAKQLRKKTAESSS 109 (133)
Q Consensus 91 ~lTEEKAkqLR~~~~etes 109 (133)
+.+-|+|++|+.||.+|=.
T Consensus 67 g~~we~Ar~lq~KM~~nL~ 85 (116)
T 2dl1_A 67 GPGWESARQMQQKMKETLQ 85 (116)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHH
Confidence 5788999999999998743
No 5
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}
Probab=39.42 E-value=21 Score=23.40 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHhhhcchhHHH
Q 032804 93 TEEKAKQLRKKTAESSSFHDV 113 (133)
Q Consensus 93 TEEKAkqLR~~~~etesFHD~ 113 (133)
+++||+++++++.+.++|-++
T Consensus 19 ~~~~A~~i~~~l~~g~~F~~l 39 (97)
T 2rqs_A 19 KQGEALAVQERLKAGEKFGKL 39 (97)
T ss_dssp CHHHHHHHHHHHTTTCCHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHH
Confidence 799999999999988889764
No 6
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=39.08 E-value=21 Score=23.07 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHhhhcchhHHH
Q 032804 93 TEEKAKQLRKKTAESSSFHDV 113 (133)
Q Consensus 93 TEEKAkqLR~~~~etesFHD~ 113 (133)
++++|+++++++.+.++|-++
T Consensus 13 ~~~~A~~i~~~l~~g~~F~~l 33 (92)
T 1jns_A 13 EEKLALDLLEQIKNGADFGKL 33 (92)
T ss_dssp SHHHHHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHH
Confidence 689999999999988889765
No 7
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=38.99 E-value=23 Score=22.79 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHhhhcchhHHH
Q 032804 93 TEEKAKQLRKKTAESSSFHDV 113 (133)
Q Consensus 93 TEEKAkqLR~~~~etesFHD~ 113 (133)
+++||+++++++.+.++|-++
T Consensus 14 ~~~~A~~i~~~l~~g~~F~~l 34 (93)
T 1zk6_A 14 DKKTAEEVEKKLKKGEKFEDL 34 (93)
T ss_dssp SHHHHHHHHHHHHHTCCHHHH
T ss_pred cHHHHHHHHHHHHCCCCHHHH
Confidence 689999999999988899765
No 8
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=37.09 E-value=15 Score=26.53 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=15.8
Q ss_pred CcccccccCCCCCCCccCC
Q 032804 45 TNWWAPLFGWSSDPGYLNN 63 (133)
Q Consensus 45 ~~WWAPLFGWSs~pDYIda 63 (133)
.+|=-||.||.+..|.+..
T Consensus 35 ~rw~nPLMGWtsS~D~~~q 53 (106)
T 2jya_A 35 PRKIDPIMGYTSSSDMKQQ 53 (106)
T ss_dssp CSCCCTTTCSCSCCCSEEE
T ss_pred CCccCCCcCcCCCCCcccc
Confidence 4777899999999998743
No 9
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}
Probab=29.80 E-value=38 Score=22.56 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHhhhcchhHHH
Q 032804 93 TEEKAKQLRKKTAESSSFHDV 113 (133)
Q Consensus 93 TEEKAkqLR~~~~etesFHD~ 113 (133)
+++||+++++++.+.++|=++
T Consensus 15 ~~~~A~~i~~~l~~G~~F~~l 35 (102)
T 2kgj_A 15 TEDEAKAVLDELNKGGDFAAL 35 (102)
T ss_dssp SHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHCCCCHHHH
Confidence 689999999999988889664
No 10
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=26.78 E-value=39 Score=20.81 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.3
Q ss_pred cccHHHHHHHHHHhhh
Q 032804 91 CFTEEKAKQLRKKTAE 106 (133)
Q Consensus 91 ~lTEEKAkqLR~~~~e 106 (133)
+||+|-|+++.+..+.
T Consensus 2 gLT~~EA~EfH~~~~~ 17 (41)
T 1nkz_B 2 TLTAEQSEELHKYVID 17 (41)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999998887754
No 11
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=25.02 E-value=50 Score=20.73 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.0
Q ss_pred CcccHHHHHHHHHHhhh
Q 032804 90 GCFTEEKAKQLRKKTAE 106 (133)
Q Consensus 90 G~lTEEKAkqLR~~~~e 106 (133)
-+||+|-|+++.+..+.
T Consensus 6 tGLT~~EA~EfH~~~~~ 22 (45)
T 1lgh_B 6 SGLTEEEAIAVHDQFKT 22 (45)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999887754
No 12
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=23.58 E-value=39 Score=21.55 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=9.6
Q ss_pred cHHHHHHHHHHh
Q 032804 93 TEEKAKQLRKKT 104 (133)
Q Consensus 93 TEEKAkqLR~~~ 104 (133)
-+||||+||.|-
T Consensus 16 a~EkaRLrRERR 27 (46)
T 3sjd_D 16 EAEKRRLLRERR 27 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 469999999775
No 13
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=22.17 E-value=1.1e+02 Score=21.38 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=20.2
Q ss_pred CCCCCCcccHHHHHHHHHHhhhcchhHH
Q 032804 85 SRFSPGCFTEEKAKQLRKKTAESSSFHD 112 (133)
Q Consensus 85 srf~~G~lTEEKAkqLR~~~~etesFHD 112 (133)
.+|. .|+.|+|++||..+.+-. +|+
T Consensus 42 ~~Fs--k~~~e~a~~l~e~L~~~~-l~~ 66 (113)
T 4ayb_F 42 NSVE--KCDAESAQKVVEELSSII-SRE 66 (113)
T ss_dssp TTTC--SSCHHHHHHHHHHHHTTC-CCH
T ss_pred HHHc--CCCHHHHHHHHHHHHHcC-CCH
Confidence 5786 689999999999998754 444
No 14
>2voi_B BH3-interacting domain death agonist P13; protein-protein complex, BCL-2, membrane, apoptosis, Pro-surviVal, mitochondrion, phosphoprotein; 2.1A {Mus musculus}
Probab=21.57 E-value=66 Score=19.14 Aligned_cols=10 Identities=30% Similarity=0.404 Sum_probs=8.0
Q ss_pred chhHHHHHHH
Q 032804 108 SSFHDVMYHS 117 (133)
Q Consensus 108 esFHD~MYHS 117 (133)
--|-|.|||+
T Consensus 16 a~igd~~d~~ 25 (34)
T 2voi_B 16 AQIGDEMDHN 25 (34)
T ss_dssp HHHHHHHHHC
T ss_pred cchhhhhhcc
Confidence 4588999986
No 15
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A
Probab=21.52 E-value=67 Score=20.85 Aligned_cols=21 Identities=14% Similarity=0.389 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHhhhcchhHHH
Q 032804 93 TEEKAKQLRKKTAESSSFHDV 113 (133)
Q Consensus 93 TEEKAkqLR~~~~etesFHD~ 113 (133)
.+++|+++++++.+.++|-++
T Consensus 24 a~~~a~~i~~~l~~g~~F~~l 44 (103)
T 2pv1_A 24 AESQARAIVDQARNGADFGKL 44 (103)
T ss_dssp HHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHH
Confidence 467899999999988888765
No 16
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}
Probab=21.43 E-value=60 Score=21.46 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHhhhc-chhHHHH
Q 032804 93 TEEKAKQLRKKTAES-SSFHDVM 114 (133)
Q Consensus 93 TEEKAkqLR~~~~et-esFHD~M 114 (133)
++++|+++++++.+. ++|-++.
T Consensus 32 ~~~~a~~i~~~l~~g~~~F~~lA 54 (111)
T 2jzv_A 32 AKQKAEEIQKEVSKDPSKFGEIA 54 (111)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHH
Confidence 678999999999987 8897653
No 17
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=21.15 E-value=48 Score=20.35 Aligned_cols=11 Identities=36% Similarity=0.598 Sum_probs=8.3
Q ss_pred HHHHHHHHHHh
Q 032804 94 EEKAKQLRKKT 104 (133)
Q Consensus 94 EEKAkqLR~~~ 104 (133)
+||||.||.|-
T Consensus 7 ~ekaRlrRERR 17 (38)
T 3zs9_C 7 AEKRRLLRERR 17 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58888888654
No 18
>2ipr_A Large T antigen; DNA binding protein; 1.50A {Simian virus 40} SCOP: d.89.1.1 PDB: 2itj_A 2itl_A 2nl8_A 1tbd_A 2fuf_A* 2if9_A 2ntc_A 2tbd_A 3qk2_A* 1z1d_B 3qn2_A*
Probab=20.92 E-value=47 Score=24.99 Aligned_cols=16 Identities=50% Similarity=0.399 Sum_probs=13.7
Q ss_pred cccHHHHHHHHHHhhh
Q 032804 91 CFTEEKAKQLRKKTAE 106 (133)
Q Consensus 91 ~lTEEKAkqLR~~~~e 106 (133)
.=|-||+++|++++.+
T Consensus 36 yTT~eK~~~Ly~~l~~ 51 (133)
T 2ipr_A 36 YTTKEKAALLYKKIME 51 (133)
T ss_dssp EECHHHHHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHHH
Confidence 4589999999999865
No 19
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=20.70 E-value=56 Score=19.81 Aligned_cols=14 Identities=50% Similarity=0.726 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhc
Q 032804 94 EEKAKQLRKKTAES 107 (133)
Q Consensus 94 EEKAkqLR~~~~et 107 (133)
|||.++.|+|+.|.
T Consensus 16 E~rV~~aR~rL~ea 29 (36)
T 2l2l_B 16 EERVQQVRKKLEEA 29 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78999999999873
No 20
>2kbw_B BH3-interacting domain death agonist; MCL-1, BID_BH3, complex, alternative splicing, apoptosis, CY developmental protein, differentiation, membrane; NMR {Homo sapiens}
Probab=20.14 E-value=76 Score=19.04 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=8.0
Q ss_pred chhHHHHHHH
Q 032804 108 SSFHDVMYHS 117 (133)
Q Consensus 108 esFHD~MYHS 117 (133)
--|-|.|||+
T Consensus 20 a~igd~~d~~ 29 (35)
T 2kbw_B 20 AQVGDSMDRS 29 (35)
T ss_dssp HHHHHHHHHS
T ss_pred cchhhhhhcc
Confidence 4588999986
Done!