Query 032804
Match_columns 133
No_of_seqs 39 out of 41
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 09:41:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032804.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032804hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijwc_ a.4.1.2 (C:) HIN recom 37.4 13 0.00095 21.4 2.8 24 91-114 5-28 (47)
2 d1jnsa_ d.26.1.1 (A:) Parvulin 29.4 17 0.0013 22.3 2.5 22 92-113 12-33 (92)
3 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 23.1 27 0.002 21.6 2.6 25 87-113 7-31 (76)
4 d1w07a2 a.29.3.2 (A:462-659) A 22.7 8.4 0.00061 27.0 -0.0 33 89-121 113-159 (198)
5 d1eq3a_ d.26.1.1 (A:) Parvulin 22.3 11 0.00083 23.6 0.6 22 92-113 11-32 (96)
6 d1gpma3 d.52.2.1 (A:405-525) G 20.9 24 0.0017 24.0 2.1 15 89-103 9-23 (121)
7 d2fufa1 d.89.1.1 (A:131-256) T 20.2 24 0.0017 24.7 2.0 15 92-106 33-47 (126)
8 d2ddha2 a.29.3.2 (A:475-655) P 20.1 12 0.00087 25.9 0.4 32 90-121 104-149 (181)
9 d1lghb_ f.3.1.1 (B:) Light-har 18.6 33 0.0024 19.9 2.1 17 90-106 4-20 (43)
10 d1jo5a_ f.3.1.1 (A:) Light-har 16.6 35 0.0025 20.3 1.9 17 90-106 9-25 (48)
No 1
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=37.44 E-value=13 Score=21.39 Aligned_cols=24 Identities=4% Similarity=0.171 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHHhhhcchhHHHH
Q 032804 91 CFTEEKAKQLRKKTAESSSFHDVM 114 (133)
Q Consensus 91 ~lTEEKAkqLR~~~~etesFHD~M 114 (133)
.||+|+-.+.|+++..-++-+++.
T Consensus 5 ~lt~~q~~~a~~l~~~G~s~~~iA 28 (47)
T d1ijwc_ 5 AINKHEQEQISRLLEKGHPRQQLA 28 (47)
T ss_dssp SSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHCCCCHHHHH
Confidence 599999999999999888877654
No 2
>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}
Probab=29.40 E-value=17 Score=22.28 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHhhhcchhHHH
Q 032804 92 FTEEKAKQLRKKTAESSSFHDV 113 (133)
Q Consensus 92 lTEEKAkqLR~~~~etesFHD~ 113 (133)
=++++|+.+++++..-++|-++
T Consensus 12 ~~~~~A~~i~~~l~~g~~F~~l 33 (92)
T d1jnsa_ 12 KEEKLALDLLEQIKNGADFGKL 33 (92)
T ss_dssp SSHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHH
Confidence 4789999999999988888654
No 3
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=23.14 E-value=27 Score=21.56 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=15.1
Q ss_pred CCCCcccHHHHHHHHHHhhhcchhHHH
Q 032804 87 FSPGCFTEEKAKQLRKKTAESSSFHDV 113 (133)
Q Consensus 87 f~~G~lTEEKAkqLR~~~~etesFHD~ 113 (133)
.++|.||+|.=+.|=+++ |+.++++
T Consensus 7 ~~~g~lT~EQK~~L~~~i--T~a~~~~ 31 (76)
T d1gyxa_ 7 CFPRELDEQQKAALAADI--TDVIIRH 31 (76)
T ss_dssp ESCCCCCHHHHHHHHHHH--HHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH--HHHHHHH
Confidence 456899977445555555 4555554
No 4
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.74 E-value=8.4 Score=27.04 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=26.9
Q ss_pred CCcccHHHHHHHHHHh--------------hhcchhHHHHHHHHHHH
Q 032804 89 PGCFTEEKAKQLRKKT--------------AESSSFHDVMYHSALAS 121 (133)
Q Consensus 89 ~G~lTEEKAkqLR~~~--------------~etesFHD~MYHSAIAS 121 (133)
-|.+|.+++++||... +++=.|+|.+.+|+|+.
T Consensus 113 ~~~ls~~q~~~l~~~i~~L~~~Lrp~Av~LVDAF~~pD~~L~SaLG~ 159 (198)
T d1w07a2 113 TNCITPKQASLANDQLRSLYTQVRPNAVALVDAFNYTDHYLNSVLGR 159 (198)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHGGGHHHHHHTTCCCHHHHTCSTTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHhccHhhc
Confidence 3789999999998764 45667899999999864
No 5
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}
Probab=22.29 E-value=11 Score=23.61 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHhhhcchhHHH
Q 032804 92 FTEEKAKQLRKKTAESSSFHDV 113 (133)
Q Consensus 92 lTEEKAkqLR~~~~etesFHD~ 113 (133)
-|++||..+++++..-++|-++
T Consensus 11 ~~~~~a~~i~~~i~~g~~F~~l 32 (96)
T d1eq3a_ 11 EKHGKIMEAMEKLKSGMRFNEV 32 (96)
T ss_dssp CCCSTHHHHHHHHTTTTSHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHH
Confidence 4778999999999999998764
No 6
>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=20.94 E-value=24 Score=23.99 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=13.4
Q ss_pred CCcccHHHHHHHHHH
Q 032804 89 PGCFTEEKAKQLRKK 103 (133)
Q Consensus 89 ~G~lTEEKAkqLR~~ 103 (133)
+|-+|+||-.+||+-
T Consensus 9 ~GevT~ekl~ilReA 23 (121)
T d1gpma3 9 LGEVKKEYCDLLRRA 23 (121)
T ss_dssp CSSCCHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHC
Confidence 499999999999974
No 7
>d2fufa1 d.89.1.1 (A:131-256) The origin DNA-binding domain of SV40 T-antigen {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=20.20 E-value=24 Score=24.71 Aligned_cols=15 Identities=53% Similarity=0.437 Sum_probs=13.5
Q ss_pred ccHHHHHHHHHHhhh
Q 032804 92 FTEEKAKQLRKKTAE 106 (133)
Q Consensus 92 lTEEKAkqLR~~~~e 106 (133)
=|-||++||..++.|
T Consensus 33 TT~eK~~~Ly~kl~e 47 (126)
T d2fufa1 33 TTKEKAALLYKKIME 47 (126)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHH
Confidence 389999999999976
No 8
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.08 E-value=12 Score=25.89 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=26.0
Q ss_pred CcccHHHHHHHHHHh--------------hhcchhHHHHHHHHHHH
Q 032804 90 GCFTEEKAKQLRKKT--------------AESSSFHDVMYHSALAS 121 (133)
Q Consensus 90 G~lTEEKAkqLR~~~--------------~etesFHD~MYHSAIAS 121 (133)
|-+|.+++++||... +++=.|+|.+.+|+|+.
T Consensus 104 g~ls~~q~~~i~~~i~~L~~~lrp~Av~LVDaF~~~D~~L~S~lG~ 149 (181)
T d2ddha2 104 SIITGAQLSQVNARILELLTLIRPNAVALVDAFDFKDMTLGSVLGR 149 (181)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHGGGHHHHHHTTCCCHHHHTCSTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCHHHHccHHhc
Confidence 789999999999754 45667899999998864
No 9
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=18.59 E-value=33 Score=19.94 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=13.7
Q ss_pred CcccHHHHHHHHHHhhh
Q 032804 90 GCFTEEKAKQLRKKTAE 106 (133)
Q Consensus 90 G~lTEEKAkqLR~~~~e 106 (133)
-+||+|-|+++.+--+.
T Consensus 4 sGLT~~EA~EfH~~~~~ 20 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKT 20 (43)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 37999999998877654
No 10
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=16.56 E-value=35 Score=20.27 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=14.4
Q ss_pred CcccHHHHHHHHHHhhh
Q 032804 90 GCFTEEKAKQLRKKTAE 106 (133)
Q Consensus 90 G~lTEEKAkqLR~~~~e 106 (133)
-+||+|-|+++.+-.+.
T Consensus 9 tGLT~~EA~E~H~~~~~ 25 (48)
T d1jo5a_ 9 TGLTDEQAQELHSVYMS 25 (48)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999987754
Done!