BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032807
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DCQ3|GOT1A_MOUSE Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1
Length = 133
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 82/121 (67%), Gaps = 3/121 (2%)
Query: 4 EIDERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNR 63
I E +KIG G+ GFG+FF I+L+FD LLA GN+L+LTG++L++GL+ T+ F R
Sbjct: 3 SITEWQKIGVGITGFGVFFILFGILLYFDSVLLAFGNLLFLTGLSLIIGLRRTFAFFFQR 62
Query: 64 ANYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFL---YQIPVVGWII 120
KG+ FL G+ + +RWP++G++LE YGFI+LF GF+P V FL + IP + +
Sbjct: 63 HKLKGTSFFLGGVAIVLLRWPLLGMLLEAYGFISLFKGFFPVVFGFLGSAFNIPFLSTLF 122
Query: 121 Q 121
Q
Sbjct: 123 Q 123
>sp|Q2NKV8|GOT1A_BOVIN Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1
Length = 132
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 3/121 (2%)
Query: 4 EIDERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNR 63
I E +KIG G GFGIFF ++L+FD LLA GN+L+LTG++L++GL+ T+ F R
Sbjct: 3 SITEWQKIGVGTTGFGIFFILFGMLLYFDSVLLAFGNLLFLTGLSLIIGLRRTFSFFFQR 62
Query: 64 ANYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFL---YQIPVVGWII 120
+KG+ FL G+ + +RWP++G+ LE YGF +LF GF+P FL IP + +
Sbjct: 63 HKFKGTSFFLGGVVIVLLRWPLLGMCLETYGFFSLFRGFFPVAFGFLGSASNIPFLSALF 122
Query: 121 Q 121
Q
Sbjct: 123 Q 123
>sp|Q20263|GOT1_CAEEL Probable Golgi transport protein 1 OS=Caenorhabditis elegans
GN=F41C3.4 PE=3 SV=2
Length = 141
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Query: 1 MAYEIDERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLF 60
M +E+ K+IG GL FG FF FL +++F D LLA+GN+L++ G+T ++G+Q T F
Sbjct: 2 MNFEVSTTKQIGVGLTTFGFFFIFLGVLMFLDSALLAIGNLLFIVGITFIIGVQRTLVFF 61
Query: 61 TNRANYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWII 120
KGSI F G+ + +P+ G+I E +GFI LF GF P + L IP + I
Sbjct: 62 FEFRKLKGSILFFGGILVVLFGYPLFGMIAECWGFIVLFGGFLPGIVNLLRSIPGISTIT 121
Query: 121 QYP--LMVLDRLK 131
P VLDRL
Sbjct: 122 YLPGIRQVLDRLA 134
>sp|Q6ZVE7|GOT1A_HUMAN Vesicle transport protein GOT1A OS=Homo sapiens GN=GOLT1A PE=2 SV=1
Length = 132
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 3/117 (2%)
Query: 4 EIDERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNR 63
I E +KIG G+ GFGIFF +L+FD LLA GN+L+LTG++L++GL+ T+ F R
Sbjct: 3 SITEWQKIGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQR 62
Query: 64 ANYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFL---YQIPVVG 117
KG+ L G+ + +RWP++G+ LE YGF +LF GF+P FL IP +G
Sbjct: 63 HKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGFLGNVCNIPFLG 119
>sp|Q54CL4|GOT1_DICDI Protein transport protein got1 homolog OS=Dictyostelium discoideum
GN=golt1 PE=3 SV=1
Length = 138
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query: 7 ERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNRANY 66
+++KIG L G+FF FL ++LF DR LLALGN+L ++G+ L+LGLQ T K F +
Sbjct: 4 DQQKIGAMLSAMGLFFGFLGVLLFLDRNLLALGNLLLVSGIVLILGLQKTTKFFAQKKKI 63
Query: 67 KGSICFLLGLFFLFV-RWPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWIIQYPLM 125
KG+I F G+ L V RW VG+++EI+GF+ LF +P V L ++P++G I+ +PL+
Sbjct: 64 KGTILFFFGIVVLLVTRWTFVGMVIEIFGFVNLFGDAFPIVISILRKLPIIGNILNHPLV 123
>sp|Q9CR60|GOT1B_MOUSE Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1
Length = 138
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 83/120 (69%)
Query: 4 EIDERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNR 63
+ + +KIG GL GFG+FF F +ILFFD+ LLA+GN+L++ G+ ++GL+ T++ F R
Sbjct: 3 SLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQR 62
Query: 64 ANYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWIIQYP 123
K + FL G+F + + WP++G+I EIYGF LF GF+P V F+ ++PV+G ++ P
Sbjct: 63 HKVKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122
>sp|Q03554|GOT1_YEAST Protein transport protein GOT1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GOT1 PE=1 SV=1
Length = 138
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 32 DRGLLALGNILWLTGVTLLLGLQSTWKLFTNRANYKGSICFLLGLFFLFVRWPIVGIILE 91
DR LLALGNIL+L GV L++G Q T+ FT +GS+ FL+G F + ++W +G I+E
Sbjct: 30 DRALLALGNILFLIGVFLIIGSQKTYIFFTRPNKRRGSLFFLVGAFLILLKWTFLGFIIE 89
Query: 92 IYGFIALFSGFWPSVKVFLYQIPVVGWIIQYPLM--VLDRLKG 132
G I LF F+ + FL +P++G I+ +P + ++D+L G
Sbjct: 90 SLGIIGLFGDFFGVIVQFLRSMPIIGPILSHPAIAPIVDKLAG 132
>sp|Q9Y3E0|GOT1B_HUMAN Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1
Length = 138
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 83/120 (69%)
Query: 4 EIDERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNR 63
+ + +KIG GL GFG+FF F +ILFFD+ LLA+GN+L++ G+ ++GL+ T++ F +
Sbjct: 3 SLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQK 62
Query: 64 ANYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWIIQYP 123
K + FL G+F + + WP++G+I EIYGF LF GF+P V F+ ++PV+G ++ P
Sbjct: 63 HKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122
>sp|Q2YDE3|GOT1B_BOVIN Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1
Length = 138
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 83/120 (69%)
Query: 4 EIDERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNR 63
+ + +KIG GL GFG+FF F +ILFFD+ LLA+GN+L++ G+ ++GL+ T++ F +
Sbjct: 3 SLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQK 62
Query: 64 ANYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWIIQYP 123
K + FL G+F + + WP++G+I EIYGF LF GF+P V F+ ++PV+G ++ P
Sbjct: 63 HKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122
>sp|Q9USJ2|GOT1_SCHPO Protein transport protein got1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=got1 PE=3 SV=1
Length = 129
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%)
Query: 5 IDERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNRA 64
+ + +KIG G G F + I +FFD LL+LGN+L + G ++ G + F +
Sbjct: 3 LSDLQKIGVGTTALGFLFMIMGIFMFFDGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKD 62
Query: 65 NYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWIIQ 121
GSI F GL +PI+G +E GF LF F+P + FL +P +G I
Sbjct: 63 RMLGSISFFSGLLLTLFHFPIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIGPYID 119
>sp|Q9BXB1|LGR4_HUMAN Leucine-rich repeat-containing G-protein coupled receptor 4 OS=Homo
sapiens GN=LGR4 PE=2 SV=2
Length = 951
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 11 IGFGLIGFGIFFTFLAIILFFDRG--LLALGNILWLTGVTLLLGLQSTWKLFTNRANYKG 68
+G +I ++F FL + LFF+ L + L L +GL S LF Y G
Sbjct: 536 LGSWMIRLTVWFIFL-VALFFNLLVILTTFASCTSLPSSKLFIGLISVSNLFM--GIYTG 592
Query: 69 SICFL----LGLFFLFVRWPIVGIILEIYGFIALFS 100
+ FL G F F W G ++ GF+A+FS
Sbjct: 593 ILTFLDAVSWGRFAEFGIWWETGSGCKVAGFLAVFS 628
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.336 0.156 0.517
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,425,966
Number of Sequences: 539616
Number of extensions: 2043550
Number of successful extensions: 7901
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 7879
Number of HSP's gapped (non-prelim): 63
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)