Query 032807
Match_columns 133
No_of_seqs 109 out of 207
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 06:12:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1743 Ferric reductase-like 100.0 5.9E-53 1.3E-57 320.5 9.1 131 3-133 1-133 (137)
2 COG5120 GOT1 Membrane protein 100.0 7.4E-40 1.6E-44 245.5 7.6 115 3-117 1-115 (129)
3 PF04178 Got1: Got1/Sft2-like 99.7 8.2E-17 1.8E-21 118.6 9.4 102 10-115 1-107 (118)
4 KOG2887 Membrane protein invol 96.8 0.011 2.3E-07 47.6 9.0 98 14-111 51-164 (175)
5 PF13129 DUF3953: Protein of u 79.0 2 4.4E-05 26.8 2.3 35 43-81 4-38 (42)
6 COG5102 SFT2 Membrane protein 75.4 5.2 0.00011 32.8 4.3 70 35-104 102-179 (201)
7 PF03729 DUF308: Short repeat 62.3 35 0.00077 21.2 7.8 64 18-81 2-66 (72)
8 PF05915 DUF872: Eukaryotic pr 60.5 17 0.00038 27.0 4.2 38 11-48 46-92 (115)
9 PRK10209 acid-resistance membr 55.3 99 0.0021 24.1 11.1 97 13-109 22-127 (190)
10 PF09925 DUF2157: Predicted me 47.6 1.1E+02 0.0025 22.6 8.5 81 11-94 32-114 (145)
11 PRK05771 V-type ATP synthase s 44.3 1.3E+02 0.0028 27.7 7.9 95 14-113 448-560 (646)
12 PRK02935 hypothetical protein; 43.5 47 0.001 25.1 4.1 45 4-51 8-52 (110)
13 PF04156 IncA: IncA protein; 41.3 90 0.002 23.7 5.6 18 34-51 44-61 (191)
14 PF14145 YrhK: YrhK-like prote 37.4 86 0.0019 20.7 4.3 32 18-49 14-45 (59)
15 PF05915 DUF872: Eukaryotic pr 32.3 1.1E+02 0.0023 22.8 4.6 39 36-81 51-89 (115)
16 PF07786 DUF1624: Protein of u 31.8 63 0.0014 25.0 3.4 63 36-101 47-116 (223)
17 PF11023 DUF2614: Protein of u 28.4 1E+02 0.0023 23.4 3.9 25 5-29 8-32 (114)
18 PF06570 DUF1129: Protein of u 25.1 3.4E+02 0.0073 21.3 8.7 23 11-33 83-105 (206)
19 PF15345 TMEM51: Transmembrane 22.8 60 0.0013 27.4 1.9 17 14-30 8-24 (233)
20 PRK10721 hypothetical protein; 21.8 40 0.00086 23.4 0.6 16 1-16 1-16 (66)
21 PF02038 ATP1G1_PLM_MAT8: ATP1 20.0 1.7E+02 0.0036 19.2 3.2 29 36-65 19-47 (50)
No 1
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-53 Score=320.46 Aligned_cols=131 Identities=51% Similarity=1.057 Sum_probs=129.1
Q ss_pred eeccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhchhhhhhhhhcccccchhhhhHhHHHHHHhh
Q 032807 3 YEIDERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNRANYKGSICFLLGLFFLFVR 82 (133)
Q Consensus 3 ~~~~d~qkiGvgl~~~G~~f~~lGv~lffDr~lLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~~ 82 (133)
||+||.||||+++|++|++|+++|++++|||+|||+||+||++|++++||.|||.+||+||||.|||+.|+.|+++|++|
T Consensus 1 ~~l~d~kkiGvg~TgfG~ff~l~Gii~ffD~aLLa~GNlLfi~GvsliiG~~~t~~FF~r~~k~kGti~F~~G~l~vl~~ 80 (137)
T KOG1743|consen 1 MELNDLKKIGVGLTGFGVFFFLFGIILFFDKALLAMGNLLFIIGVSLIIGFRKTMQFFFRRQKMKGTISFLGGVLLVLFG 80 (137)
T ss_pred CccchhhHhCeEEechhHHHHHHHHHHHHhhHHHHhcchHHHHhHHHhhcchhhhhhheehhhcceeeehhhhHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhcchHHHHHHhhcCCcccccccccH--HHHhhhhCC
Q 032807 83 WPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWIIQYPL--MVLDRLKGG 133 (133)
Q Consensus 83 ~p~iG~i~E~~G~~~LF~~F~P~~~~fLr~~P~ig~il~~P~--~~~~~l~g~ 133 (133)
||++||++|+||+++||++|+|++++|+|++|++||++|+|+ +.+||+++.
T Consensus 81 wPi~Gm~lE~~Gff~LF~gF~P~i~~flrs~p~lG~i~~~p~i~~~~drl~~~ 133 (137)
T KOG1743|consen 81 WPIFGMILETYGFFVLFRGFFPVIVVFLRSIPVLGWILNLPGIRSFLDRLAGP 133 (137)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCccccccccCccHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999 999999863
No 2
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.4e-40 Score=245.51 Aligned_cols=115 Identities=34% Similarity=0.731 Sum_probs=114.4
Q ss_pred eeccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhchhhhhhhhhcccccchhhhhHhHHHHHHhh
Q 032807 3 YEIDERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNRANYKGSICFLLGLFFLFVR 82 (133)
Q Consensus 3 ~~~~d~qkiGvgl~~~G~~f~~lGv~lffDr~lLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~~ 82 (133)
||++|.||+|++.|+.|..|+..|+.+||||+++++||+|+++|+.+++|.||+..||.||+|++||+.|+.|.+++++|
T Consensus 1 mwl~~lqk~GV~~t~~Gflffl~Gif~ffDraLl~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~l~~ 80 (129)
T COG5120 1 MWLMNLQKSGVVVTSIGFLFFLVGIFLFFDRALLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLYR 80 (129)
T ss_pred CchhhhhHcCeEEeehhHHHHHHHHHHHhhhHHHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhcchHHHHHHhhcCCccc
Q 032807 83 WPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVG 117 (133)
Q Consensus 83 ~p~iG~i~E~~G~~~LF~~F~P~~~~fLr~~P~ig 117 (133)
||++|+++|+.|+++||++|+|++.+|||.+|++|
T Consensus 81 fp~~GF~~E~LG~f~Lf~df~p~i~~fLRt~p~ig 115 (129)
T COG5120 81 FPMFGFLLETLGLFLLFRDFIPTIRTFLRTLPLIG 115 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999
No 3
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=99.70 E-value=8.2e-17 Score=118.63 Aligned_cols=102 Identities=32% Similarity=0.605 Sum_probs=97.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhHHHhchhhhhhhhhcccccchhhhhHhHHHHHHhhhhHH
Q 032807 10 KIGFGLIGFGIFFTFLAIILFFDR---GLLALGNILWLTGVTLLLGLQSTWKLFTNRANYKGSICFLLGLFFLFVRWPIV 86 (133)
Q Consensus 10 kiGvgl~~~G~~f~~lGv~lffDr---~lLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~~~p~i 86 (133)
|+|+.++..|.++.++|++++.|| .+.++||+++++|..+++||+|..+++.+|+|+++|++|+.+++++++ .
T Consensus 1 ~~G~~~~~l~~~~~~~~~~~~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~----~ 76 (118)
T PF04178_consen 1 KIGIICFFLSLIFFFLGVLLFFPRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLY----F 76 (118)
T ss_pred CeehHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH----H
Confidence 789999999999999999999999 999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHhhhcch-HHHHHHhhcC-Cc
Q 032807 87 GIILEIYGFIALFSGFW-PSVKVFLYQI-PV 115 (133)
Q Consensus 87 G~i~E~~G~~~LF~~F~-P~~~~fLr~~-P~ 115 (133)
|+..|.|++.++|+.+. |..+.|+.+. |.
T Consensus 77 ~~~~~~~~l~llf~~~q~~al~wy~~s~iP~ 107 (118)
T PF04178_consen 77 AFILKSYGLTLLFSIFQFPALIWYLLSYIPF 107 (118)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999988 9999888875 84
No 4
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.011 Score=47.56 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=80.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHhHHHhchhhhhhhhhcccccchhhhhHhHHHHHHhh---
Q 032807 14 GLIGFGIFFTFLAIILFFDRG--------LLALGNILWLTGVTLLLGLQSTWKLFTNRANYKGSICFLLGLFFLFVR--- 82 (133)
Q Consensus 14 gl~~~G~~f~~lGv~lffDr~--------lLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~~--- 82 (133)
...+.|+++.+++.+++.--. +-++||++++.+-..++||++=++--+.|+|+-.|+.|+.=.++-++-
T Consensus 51 ~cl~~gv~c~~l~~~lf~v~~~~~~kFal~~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~ 130 (175)
T KOG2887|consen 51 ICLAGGVLCFLLAMVLFPVLVVSPRKFALLYTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALW 130 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccceeehhHHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999998655 678999999999999999999999999999999999999888775542
Q ss_pred -----hhHHHHHHHHHHHHHhhhcchHHHHHHhh
Q 032807 83 -----WPIVGIILEIYGFIALFSGFWPSVKVFLY 111 (133)
Q Consensus 83 -----~p~iG~i~E~~G~~~LF~~F~P~~~~fLr 111 (133)
-.++=-++|...+.+--=+++|-.-+-++
T Consensus 131 ~ks~iLtllf~ilq~laliwYslSyiP~g~~gv~ 164 (175)
T KOG2887|consen 131 LKSKILTLLFCILQVLALIWYSLSYIPFGRSGVS 164 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 26667778888887777777776555443
No 5
>PF13129 DUF3953: Protein of unknown function (DUF3953)
Probab=79.02 E-value=2 Score=26.79 Aligned_cols=35 Identities=29% Similarity=0.586 Sum_probs=25.7
Q ss_pred HHHHhHHHhchhhhhhhhhcccccchhhhhHhHHHHHHh
Q 032807 43 WLTGVTLLLGLQSTWKLFTNRANYKGSICFLLGLFFLFV 81 (133)
Q Consensus 43 fl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~ 81 (133)
++.-..+++|.+..- |++|..|..||..|++.++.
T Consensus 4 lLG~m~~~~Gi~e~k----k~~k~~g~~~f~~~~f~~~V 38 (42)
T PF13129_consen 4 LLGLMMFIIGIEEIK----KERKSSGILSFLVGAFILFV 38 (42)
T ss_pred HHHHHHHHHHHHHHH----hcccceehHHHHHHHHheEE
Confidence 334445566766653 88999999999999987654
No 6
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=75.43 E-value=5.2 Score=32.78 Aligned_cols=70 Identities=20% Similarity=0.399 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhHHHhchhhhhhhhhcccccchhhhhHhHHHHHH-----hhhhHHH---HHHHHHHHHHhhhcchH
Q 032807 35 LLALGNILWLTGVTLLLGLQSTWKLFTNRANYKGSICFLLGLFFLF-----VRWPIVG---IILEIYGFIALFSGFWP 104 (133)
Q Consensus 35 lLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl-----~~~p~iG---~i~E~~G~~~LF~~F~P 104 (133)
+-+|||+||+.+...++|+..-++-.+.|+|+.=|..|++-.++-+ .+..+.- -.+|..-++.---.|+|
T Consensus 102 lwTmgslLfvl~Fg~l~Gf~ayl~~Lts~erlp~s~~ff~t~l~Tiy~~~k~k~t~L~i~f~~l~vvsfi~y~itffP 179 (201)
T COG5102 102 LWTMGSLLFVLMFGFLLGFRAYLEGLTSKERLPHSSWFFGTTLLTIYVVLKYKRTLLNIAFCFLQVVSFIMYSITFFP 179 (201)
T ss_pred ehhHHHHHHHHHHHHHHhHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4589999999999999999999999999999999988887665533 2333322 23555555444444444
No 7
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=62.34 E-value=35 Score=21.22 Aligned_cols=64 Identities=23% Similarity=0.349 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhchhhhhhhhhcccccch-hhhhHhHHHHHHh
Q 032807 18 FGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNRANYKG-SICFLLGLFFLFV 81 (133)
Q Consensus 18 ~G~~f~~lGv~lffDr~lLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kG-ti~F~~Gi~lvl~ 81 (133)
.|+....+|+.++.....-...=...+....+.-|..+-.+.+.||++.++ ......|+.-+..
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~~ 66 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASLAALAIILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIVL 66 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 377888899999887766555444555556667788888888886654333 2334444444443
No 8
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=60.51 E-value=17 Score=27.01 Aligned_cols=38 Identities=29% Similarity=0.629 Sum_probs=22.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhH
Q 032807 11 IGFGLIGFGIFFTFLAIILFFDR---------GLLALGNILWLTGVT 48 (133)
Q Consensus 11 iGvgl~~~G~~f~~lGv~lffDr---------~lLalGNiLfl~Gl~ 48 (133)
+++.|+.+|..++..|.+++.++ +++.+|=+.|+=|..
T Consensus 46 la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y 92 (115)
T PF05915_consen 46 LAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFY 92 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHH
Confidence 35556666666666666666554 455555555555544
No 9
>PRK10209 acid-resistance membrane protein; Provisional
Probab=55.33 E-value=99 Score=24.14 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=57.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhchhhhhhhhhcccccchhh--hhHhHHHHHH-----hhhhH
Q 032807 13 FGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLFTNRANYKGSI--CFLLGLFFLF-----VRWPI 85 (133)
Q Consensus 13 vgl~~~G~~f~~lGv~lffDr~lLalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGti--~F~~Gi~lvl-----~~~p~ 85 (133)
..+...|+....+|++.++|...-...=...+....++-|.-+-...|..|++-+... ....|+..++ ..+|.
T Consensus 22 ~~~li~Gil~ivlGi~~l~~P~~~~~~~~~~~g~~ll~~Gi~~l~~~~~~~~~~~~~~~~~ll~Gil~ii~Gil~l~~P~ 101 (190)
T PRK10209 22 RAIQIIAVLLFIGGLLCLSFPFVSGDALSTVVGILLICSGIALIVGLFANRSHNFWPMLSGILLGVAYLVLGYFFIRNPE 101 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3567789999999999999987544433333444444556666566665444322211 2334544443 35787
Q ss_pred HHHHHH--HHHHHHhhhcchHHHHHH
Q 032807 86 VGIILE--IYGFIALFSGFWPSVKVF 109 (133)
Q Consensus 86 iG~i~E--~~G~~~LF~~F~P~~~~f 109 (133)
.+...= ..|.+.+..+..-.+.++
T Consensus 102 ~~~~~l~~l~g~~~iv~Gi~~i~~a~ 127 (190)
T PRK10209 102 VGMFSLAAFIAGLFCVGGIIRLMSGY 127 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776543 367777777777666554
No 10
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=47.57 E-value=1.1e+02 Score=22.55 Aligned_cols=81 Identities=22% Similarity=0.253 Sum_probs=50.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhchhhhhhhh--hcccccchhhhhHhHHHHHHhhhhHHHH
Q 032807 11 IGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLLGLQSTWKLF--TNRANYKGSICFLLGLFFLFVRWPIVGI 88 (133)
Q Consensus 11 iGvgl~~~G~~f~~lGv~lffDr~lLalGNiLfl~Gl~l~iG~~kt~~FF--~~~~k~kGti~F~~Gi~lvl~~~p~iG~ 88 (133)
.-..+..+|..+..+|++.|+-.+==.++...=+......+-..-...+. .|+++.-+..+...+.+++- +.+++
T Consensus 32 ~~~~l~~lGall~~~gii~fvA~nW~~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~g---a~ial 108 (145)
T PF09925_consen 32 LARILLYLGALLLGLGIILFVAANWDDIPRLAKLGLLLALLLLSYVGGFWLWRRRSPRLAEALLLLGAVLFG---ALIAL 108 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH---HHHHH
Confidence 57788999999999999999988777776654322222222112222222 36666677777777766655 34555
Q ss_pred HHHHHH
Q 032807 89 ILEIYG 94 (133)
Q Consensus 89 i~E~~G 94 (133)
+-|+|-
T Consensus 109 igQ~y~ 114 (145)
T PF09925_consen 109 IGQIYQ 114 (145)
T ss_pred HHhHhc
Confidence 666653
No 11
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=44.26 E-value=1.3e+02 Score=27.71 Aligned_cols=95 Identities=19% Similarity=0.248 Sum_probs=47.9
Q ss_pred hhhhHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHhHHHhchhhhhhhhhccc---ccchhhhhHhHHHHHH
Q 032807 14 GLIGFGIFFTFLAIILFF----------DRGLLALGNILWLTGVTLLLGLQSTWKLFTNRA---NYKGSICFLLGLFFLF 80 (133)
Q Consensus 14 gl~~~G~~f~~lGv~lff----------Dr~lLalGNiLfl~Gl~l~iG~~kt~~FF~~~~---k~kGti~F~~Gi~lvl 80 (133)
.-..+|++-.++|.++=. |.-+=.+|.++++.|+.+.....-. ...+. ..-|-.....|+++++
T Consensus 448 lsl~iGvi~i~~g~~l~~~~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~ 524 (646)
T PRK05771 448 ISLLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGGFG---LVVGLGPLGLIGKYLIIGGVVLII 524 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhccchHHHHHHHHHHHHHHHHHH
Confidence 344566666666666511 1111237888888888776521100 01111 1123345556666655
Q ss_pred hhh-----hHHHHHHHHHHHHHhhhcchHHHHHHhhcC
Q 032807 81 VRW-----PIVGIILEIYGFIALFSGFWPSVKVFLYQI 113 (133)
Q Consensus 81 ~~~-----p~iG~i~E~~G~~~LF~~F~P~~~~fLr~~ 113 (133)
.+- ...+.+. .++.+...+ ++-.++||+|-.
T Consensus 525 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~d~lSY~RL~ 560 (646)
T PRK05771 525 LGEGIDGKSLGGALG-GLGLYEITG-YLGDVLSYARLM 560 (646)
T ss_pred Hhcchhccccchhhh-hhhHHHHHH-HHHHHHHHHHHH
Confidence 421 1122222 556666665 677788887743
No 12
>PRK02935 hypothetical protein; Provisional
Probab=43.48 E-value=47 Score=25.14 Aligned_cols=45 Identities=20% Similarity=0.450 Sum_probs=28.6
Q ss_pred eccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHh
Q 032807 4 EIDERKKIGFGLIGFGIFFTFLAIILFFDRGLLALGNILWLTGVTLLL 51 (133)
Q Consensus 4 ~~~d~qkiGvgl~~~G~~f~~lGv~lffDr~lLalGNiLfl~Gl~l~i 51 (133)
.+|.-+..+..++..|+...-+|+++ |+--.+--+..+.|+..++
T Consensus 8 KINkiRt~aL~lvfiG~~vMy~Giff---~~~~~~m~ifm~~G~l~~l 52 (110)
T PRK02935 8 KINKIRTFALSLVFIGFIVMYLGIFF---RESIIIMTIFMLLGFLAVI 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHH
Confidence 46777788899999999988888433 3322333344445555555
No 13
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.27 E-value=90 Score=23.69 Aligned_cols=18 Identities=50% Similarity=0.665 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhHHHh
Q 032807 34 GLLALGNILWLTGVTLLL 51 (133)
Q Consensus 34 ~lLalGNiLfl~Gl~l~i 51 (133)
+++|+|=+|+..|+....
T Consensus 44 ~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 44 ALLALGVVLLSLGLLCLL 61 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666666554
No 14
>PF14145 YrhK: YrhK-like protein
Probab=37.43 E-value=86 Score=20.65 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHH
Q 032807 18 FGIFFTFLAIILFFDRGLLALGNILWLTGVTL 49 (133)
Q Consensus 18 ~G~~f~~lGv~lffDr~lLalGNiLfl~Gl~l 49 (133)
.|...+..|-++|+-+..-..|..+|++|=.+
T Consensus 14 ~~~~~FliGSilfl~~~~~~~g~wlFiiGS~~ 45 (59)
T PF14145_consen 14 IGGLLFLIGSILFLPESLYTAGTWLFIIGSIL 45 (59)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 44444555555555556666666666666443
No 15
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=32.28 E-value=1.1e+02 Score=22.80 Aligned_cols=39 Identities=23% Similarity=0.517 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhHHHhchhhhhhhhhcccccchhhhhHhHHHHHHh
Q 032807 36 LALGNILWLTGVTLLLGLQSTWKLFTNRANYKGSICFLLGLFFLFV 81 (133)
Q Consensus 36 LalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~ 81 (133)
+..|-++.+.|..+..+.- ..++-++...+..|++..+=
T Consensus 51 li~G~~li~~g~l~~~~~i-------~~~~~~~~~llilG~L~fIP 89 (115)
T PF05915_consen 51 LIFGTVLIIIGLLLFFGHI-------DGDRDRGWALLILGILCFIP 89 (115)
T ss_pred HHHHHHHHHHHHHHHhccc-------CCCCcccchHHHHHHHHHhc
Confidence 3444445555555555421 14556777777777776653
No 16
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=31.84 E-value=63 Score=25.00 Aligned_cols=63 Identities=29% Similarity=0.457 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhHHHhchhhhhhhhhcccccchhhhhHhHHHHHHhhhh-------HHHHHHHHHHHHHhhhc
Q 032807 36 LALGNILWLTGVTLLLGLQSTWKLFTNRANYKGSICFLLGLFFLFVRWP-------IVGIILEIYGFIALFSG 101 (133)
Q Consensus 36 LalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~kGti~F~~Gi~lvl~~~p-------~iG~i~E~~G~~~LF~~ 101 (133)
++..=.+|++|+++.+-.+|..+- |+.-.|+...+..|..+....|. ..| +++.+|...+...
T Consensus 47 ~~ap~F~fl~G~s~~l~~~~~~~~--~~~~~R~~~l~~~g~~i~~~~~~~~~~~~i~~g-IL~~ig~~~ll~~ 116 (223)
T PF07786_consen 47 LAAPLFLFLAGISLALSTGRRRRR--RKFLKRGLKLFLLGLLINLLTFFFFPEGFIYFG-ILQFIGLSMLLAA 116 (223)
T ss_pred HHHHHHHHHHHHHHHHhcccccch--hHHHHHHHHHHHHHHHHHHHHHHhcCCceeehh-HHHHHHHHHHHHH
Confidence 445567789999998887777655 44446788888889888777652 112 6777777666433
No 17
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=28.35 E-value=1e+02 Score=23.39 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=20.4
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHH
Q 032807 5 IDERKKIGFGLIGFGIFFTFLAIIL 29 (133)
Q Consensus 5 ~~d~qkiGvgl~~~G~~f~~lGv~l 29 (133)
+|+-+..+..|+..|+....+|+++
T Consensus 8 iN~~R~~al~lif~g~~vmy~gi~f 32 (114)
T PF11023_consen 8 INKIRTFALSLIFIGMIVMYIGIFF 32 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5677788999999999988888644
No 18
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.13 E-value=3.4e+02 Score=21.26 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=19.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhh
Q 032807 11 IGFGLIGFGIFFTFLAIILFFDR 33 (133)
Q Consensus 11 iGvgl~~~G~~f~~lGv~lffDr 33 (133)
+-.+++.+|++..+-|++.+|++
T Consensus 83 ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 83 LDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567888999999999999988
No 19
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.76 E-value=60 Score=27.39 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHH
Q 032807 14 GLIGFGIFFTFLAIILF 30 (133)
Q Consensus 14 gl~~~G~~f~~lGv~lf 30 (133)
+||++|+-.+.|||+|-
T Consensus 8 AL~AiG~Gml~LGiiM~ 24 (233)
T PF15345_consen 8 ALTAIGVGMLALGIIMI 24 (233)
T ss_pred HHHHHhHhHHHHhhHhe
Confidence 68888888888998885
No 20
>PRK10721 hypothetical protein; Provisional
Probab=21.82 E-value=40 Score=23.38 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.2
Q ss_pred Cceeccccchhhhhhh
Q 032807 1 MAYEIDERKKIGFGLI 16 (133)
Q Consensus 1 m~~~~~d~qkiGvgl~ 16 (133)
|+|.++|.+.|+..|.
T Consensus 1 M~mkW~D~~dIA~~L~ 16 (66)
T PRK10721 1 MGLKWTDSREIGEALY 16 (66)
T ss_pred CCCcccCHHHHHHHHH
Confidence 7888999999987764
No 21
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=20.01 E-value=1.7e+02 Score=19.25 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhHHHhchhhhhhhhhcccc
Q 032807 36 LALGNILWLTGVTLLLGLQSTWKLFTNRAN 65 (133)
Q Consensus 36 LalGNiLfl~Gl~l~iG~~kt~~FF~~~~k 65 (133)
|...-+||+.|+.+++. +|.-.=+.|+++
T Consensus 19 Li~A~vlfi~Gi~iils-~kckCk~~qk~~ 47 (50)
T PF02038_consen 19 LIFAGVLFILGILIILS-GKCKCKFNQKPR 47 (50)
T ss_dssp HHHHHHHHHHHHHHHCT-THHHHHHSTTTT
T ss_pred hHHHHHHHHHHHHHHHc-CccccCCCCCCC
Confidence 34456778888866664 555444555543
Done!