Query 032807
Match_columns 133
No_of_seqs 109 out of 207
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 39.6 1.2E+02 0.004 22.7 7.3 68 33-106 75-150 (194)
2 1b35_D CRPV, protein (cricket 29.1 17 0.00057 23.4 0.8 16 109-124 27-42 (57)
3 2jp3_A FXYD domain-containing 24.1 87 0.003 20.8 3.6 31 36-67 22-52 (67)
4 2jo1_A Phospholemman; FXYD1, N 17.9 1.2E+02 0.0041 20.4 3.3 29 36-65 21-49 (72)
5 2zxe_G FXYD10, phospholemman-l 13.1 1.2E+02 0.0041 20.5 2.3 29 36-65 24-52 (74)
6 3gp2_B Calcium/calmodulin-depe 12.0 32 0.0011 18.4 -0.7 12 60-71 3-14 (22)
7 2ks1_B Epidermal growth factor 11.2 1.4E+02 0.0047 18.0 1.9 9 58-66 32-40 (44)
8 2l2t_A Receptor tyrosine-prote 9.7 1.7E+02 0.0057 17.7 1.9 9 58-66 31-39 (44)
9 1z00_B DNA repair endonuclease 9.4 1.9E+02 0.0065 19.1 2.3 16 102-117 12-27 (84)
10 3tia_A Neuraminidase; 6-bladed 6.7 1E+02 0.0036 27.2 0.0 22 5-26 1-25 (469)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=39.58 E-value=1.2e+02 Score=22.70 Aligned_cols=68 Identities=9% Similarity=0.095 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHhHHHhchhhhh-hhhhc------ccccchhhhhHhHHHHHHhhhh-HHHHHHHHHHHHHhhhcchH
Q 032807 33 RGLLALGNILWLTGVTLLLGLQSTW-KLFTN------RANYKGSICFLLGLFFLFVRWP-IVGIILEIYGFIALFSGFWP 104 (133)
Q Consensus 33 r~lLalGNiLfl~Gl~l~iG~~kt~-~FF~~------~~k~kGti~F~~Gi~lvl~~~p-~iG~i~E~~G~~~LF~~F~P 104 (133)
..+..+|.+++++|+.+..--.++. ++|.. ++++-=|..|- ..|+| ..|.+++..|.....++..+
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~------~vRHP~Y~G~~l~~~g~~l~~~s~~~ 148 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYK------NIRHPMYAHLWLWVITQGIILSNWVV 148 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTT------TBSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcch------hccCccHHHHHHHHHHHHHHhccHHH
Confidence 4567899999999999988777776 45542 23333232221 34666 57888888887777777654
Q ss_pred HH
Q 032807 105 SV 106 (133)
Q Consensus 105 ~~ 106 (133)
.+
T Consensus 149 ~~ 150 (194)
T 4a2n_B 149 LI 150 (194)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=29.13 E-value=17 Score=23.45 Aligned_cols=16 Identities=44% Similarity=0.638 Sum_probs=14.2
Q ss_pred HhhcCCcccccccccH
Q 032807 109 FLYQIPVVGWIIQYPL 124 (133)
Q Consensus 109 fLr~~P~ig~il~~P~ 124 (133)
-+..+|++|+++.-|.
T Consensus 27 t~s~ipilgn~fs~pa 42 (57)
T 1b35_D 27 TLSHIPVLGNIFSTPA 42 (57)
T ss_dssp CTTCCCCSCCSSSSCT
T ss_pred hhhccccccccccchH
Confidence 4678999999999998
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=24.06 E-value=87 Score=20.81 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhHHHhchhhhhhhhhcccccc
Q 032807 36 LALGNILWLTGVTLLLGLQSTWKLFTNRANYK 67 (133)
Q Consensus 36 LalGNiLfl~Gl~l~iG~~kt~~FF~~~~k~k 67 (133)
|...-+||+.|+.+++. +|.-.=|.|+++-+
T Consensus 22 LifA~vLfi~GI~iilS-~kcrCk~~qk~~~~ 52 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALS-GKCKCRRNHTPSSL 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHT-THHHHHHTCCTTTS
T ss_pred hhhHHHHHHHHHHHHHc-CcccccCCCCCCCC
Confidence 34556788888888773 45666676665543
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=17.94 E-value=1.2e+02 Score=20.38 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhHHHhchhhhhhhhhcccc
Q 032807 36 LALGNILWLTGVTLLLGLQSTWKLFTNRAN 65 (133)
Q Consensus 36 LalGNiLfl~Gl~l~iG~~kt~~FF~~~~k 65 (133)
|...-+||+.|+.+++. +|.-.=|.||++
T Consensus 21 LifA~vLfi~GI~iilS-~KckCk~~qk~r 49 (72)
T 2jo1_A 21 LVIAGILFILGILIVLS-RRCRCKFNQQQR 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHHc-CccccCCCCCCC
Confidence 34556778888877773 455556666654
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=13.14 E-value=1.2e+02 Score=20.49 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhHHHhchhhhhhhhhcccc
Q 032807 36 LALGNILWLTGVTLLLGLQSTWKLFTNRAN 65 (133)
Q Consensus 36 LalGNiLfl~Gl~l~iG~~kt~~FF~~~~k 65 (133)
|...-+||+.|+.+++ -+|.-.=|.||++
T Consensus 24 LifA~vLfi~GI~iil-S~kcrCk~~qk~~ 52 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILL-AGKCRCKFNQNKR 52 (74)
T ss_dssp HHHHHHHHHHHHHHHT-TTC----------
T ss_pred chhHHHHHHHHHHHHH-cCccccCCCCCCC
Confidence 3455678888888777 3455555665554
No 6
>3gp2_B Calcium/calmodulin-dependent protein kinase type II delta chain; metal binding protein, ATP-binding, calmodulin- binding, nucleotide-binding; 1.46A {Homo sapiens}
Probab=11.99 E-value=32 Score=18.40 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=8.9
Q ss_pred hhcccccchhhh
Q 032807 60 FTNRANYKGSIC 71 (133)
Q Consensus 60 F~~~~k~kGti~ 71 (133)
|..|+|+||.+.
T Consensus 3 FNaRRKLK~aIl 14 (22)
T 3gp2_B 3 FNARRKLKGAIL 14 (26)
T ss_pred ccHHHHHHHHHH
Confidence 556888998764
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=11.24 E-value=1.4e+02 Score=18.01 Aligned_cols=9 Identities=33% Similarity=0.526 Sum_probs=4.4
Q ss_pred hhhhccccc
Q 032807 58 KLFTNRANY 66 (133)
Q Consensus 58 ~FF~~~~k~ 66 (133)
-||.||+|.
T Consensus 32 ~~~~RRr~~ 40 (44)
T 2ks1_B 32 GLFMRRRHI 40 (44)
T ss_dssp HHHHHTTTC
T ss_pred HHHhhhhHh
Confidence 445555543
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=9.71 E-value=1.7e+02 Score=17.70 Aligned_cols=9 Identities=11% Similarity=0.419 Sum_probs=4.3
Q ss_pred hhhhccccc
Q 032807 58 KLFTNRANY 66 (133)
Q Consensus 58 ~FF~~~~k~ 66 (133)
-||.||+|.
T Consensus 31 ~~~~RRRr~ 39 (44)
T 2l2t_A 31 AVYVRRKSI 39 (44)
T ss_dssp HHHHHTTCS
T ss_pred HHHhhhhhh
Confidence 445555443
No 9
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=9.39 E-value=1.9e+02 Score=19.10 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=13.7
Q ss_pred chHHHHHHhhcCCccc
Q 032807 102 FWPSVKVFLYQIPVVG 117 (133)
Q Consensus 102 F~P~~~~fLr~~P~ig 117 (133)
+=|...+.|+++|.||
T Consensus 12 ~N~~~~s~L~~IpGIG 27 (84)
T 1z00_B 12 YNPGPQDFLLKMPGVN 27 (84)
T ss_dssp SCHHHHHHHHTCSSCC
T ss_pred ccccHHHHHHhCCCCC
Confidence 4467889999999999
No 10
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding, glycosylation, ANT hydrolase-hydrolase inhibitor complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus} PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A* 1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A* 2aep_A* 2aeq_A* 4gzq_A* 4gzo_A* 4gzp_A* 4gzt_A* 4gzs_A* ...
Probab=6.66 E-value=1e+02 Score=27.19 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred ccccchh---hhhhhhHHHHHHHHH
Q 032807 5 IDERKKI---GFGLIGFGIFFTFLA 26 (133)
Q Consensus 5 ~~d~qki---Gvgl~~~G~~f~~lG 26 (133)
||.+||| |..-+++|++-++++
T Consensus 1 MNPNQKIITIGSVSLtLgtInLLLq 25 (469)
T 3tia_A 1 MNPNQKIITIGSVSLTIATVCFLMQ 25 (469)
T ss_dssp -------------------------
T ss_pred CCCCceEEEEcchhHHHHHHHHHHh
Confidence 5789995 555455444444444
Done!