Query 032807
Match_columns 133
No_of_seqs 109 out of 207
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 09:44:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032807.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032807hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjd2 f.23.11.1 (D:196-241) 13.3 34 0.0025 19.5 1.2 15 4-18 2-16 (46)
2 d3dtua1 f.24.1.1 (A:14-551) Ba 11.4 59 0.0043 26.7 2.5 24 6-29 11-34 (538)
3 d2bcqa2 a.60.12.1 (A:329-385) 9.7 28 0.002 20.6 -0.1 10 4-13 40-49 (57)
4 d1v54a_ f.24.1.1 (A:) Mitochon 9.3 78 0.0057 25.8 2.5 25 5-29 9-33 (514)
5 d2fmpa2 a.60.12.1 (A:92-148) D 9.0 31 0.0023 20.3 -0.1 9 5-13 41-49 (57)
6 d2otaa1 a.284.1.1 (A:7-68) Hyp 7.9 77 0.0056 19.2 1.4 11 32-42 25-35 (62)
7 d1utca1 a.118.1.4 (A:331-355) 7.8 20 0.0015 18.5 -1.2 12 113-124 5-16 (26)
8 d1jmsa3 a.60.12.1 (A:243-302) 7.6 39 0.0028 20.0 -0.1 10 4-13 42-51 (60)
9 d1lc0a1 c.2.1.3 (A:2-128,A:247 7.6 21 0.0016 23.5 -1.6 16 5-20 2-17 (172)
10 d2qtia1 a.284.1.1 (A:8-72) Unc 7.2 85 0.0062 19.1 1.4 11 32-42 24-34 (65)
No 1
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.33 E-value=34 Score=19.46 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=9.2
Q ss_pred eccccchhhhhhhhH
Q 032807 4 EIDERKKIGFGLIGF 18 (133)
Q Consensus 4 ~~~d~qkiGvgl~~~ 18 (133)
|+||+|+.|+-.+.+
T Consensus 2 e~d~RK~mG~Kv~~~ 16 (46)
T d1ppjd2 2 EHDHRKRMGLKMLLM 16 (46)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 457777776655543
No 2
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.41 E-value=59 Score=26.68 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.6
Q ss_pred cccchhhhhhhhHHHHHHHHHHHH
Q 032807 6 DERKKIGFGLIGFGIFFTFLAIIL 29 (133)
Q Consensus 6 ~d~qkiGvgl~~~G~~f~~lGv~l 29 (133)
+|-||||+--...|+.+.++|..+
T Consensus 11 ~dHK~IG~~Yl~~~~~~~~~G~~~ 34 (538)
T d3dtua1 11 TNHKDIGVLYLFTGGLVGLISVAF 34 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999988864
No 3
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.68 E-value=28 Score=20.59 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=8.1
Q ss_pred eccccchhhh
Q 032807 4 EIDERKKIGF 13 (133)
Q Consensus 4 ~~~d~qkiGv 13 (133)
.+|+.|+||+
T Consensus 40 ~Ln~~Q~iGL 49 (57)
T d2bcqa2 40 SLTTQQAIGL 49 (57)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHhH
Confidence 3788999986
No 4
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.33 E-value=78 Score=25.75 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.3
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHH
Q 032807 5 IDERKKIGFGLIGFGIFFTFLAIIL 29 (133)
Q Consensus 5 ~~d~qkiGvgl~~~G~~f~~lGv~l 29 (133)
-+|-||||+--..+|+.+.+.|.++
T Consensus 9 t~dHK~iG~lYl~~~~~~~~~G~~l 33 (514)
T d1v54a_ 9 STNHKDIGTLYLLFGAWAGMVGTAL 33 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999988888654
No 5
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.97 E-value=31 Score=20.34 Aligned_cols=9 Identities=22% Similarity=0.844 Sum_probs=7.7
Q ss_pred ccccchhhh
Q 032807 5 IDERKKIGF 13 (133)
Q Consensus 5 ~~d~qkiGv 13 (133)
+|+.|+||+
T Consensus 41 Lt~~Q~iGL 49 (57)
T d2fmpa2 41 LNHHQRIGL 49 (57)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 788999886
No 6
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=7.86 E-value=77 Score=19.17 Aligned_cols=11 Identities=45% Similarity=0.779 Sum_probs=9.0
Q ss_pred hhHHHHHHHHH
Q 032807 32 DRGLLALGNIL 42 (133)
Q Consensus 32 Dr~lLalGNiL 42 (133)
|=.|+++||..
T Consensus 25 DLSLMvLGN~v 35 (62)
T d2otaa1 25 DLALMCLGNAV 35 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 66899999974
No 7
>d1utca1 a.118.1.4 (A:331-355) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.75 E-value=20 Score=18.47 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=10.0
Q ss_pred CCcccccccccH
Q 032807 113 IPVVGWIIQYPL 124 (133)
Q Consensus 113 ~P~ig~il~~P~ 124 (133)
+|+|.++++.|-
T Consensus 5 ipyi~~vlqnpd 16 (26)
T d1utca1 5 IPYITNVLQNPD 16 (26)
T ss_dssp HHHHHHTTCCHH
T ss_pred hhhhhhhccChh
Confidence 588888999886
No 8
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.61 E-value=39 Score=20.01 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=8.1
Q ss_pred eccccchhhh
Q 032807 4 EIDERKKIGF 13 (133)
Q Consensus 4 ~~~d~qkiGv 13 (133)
.+|+.|+||+
T Consensus 42 ~Lt~~Q~iGL 51 (60)
T d1jmsa3 42 RFTQMQKAGF 51 (60)
T ss_dssp CCCHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 4789999886
No 9
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.56 E-value=21 Score=23.50 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.8
Q ss_pred ccccchhhhhhhhHHH
Q 032807 5 IDERKKIGFGLIGFGI 20 (133)
Q Consensus 5 ~~d~qkiGvgl~~~G~ 20 (133)
++++.|+++++.|.|-
T Consensus 2 ~~~~~k~kv~iIG~G~ 17 (172)
T d1lc0a1 2 ITNSGKFGVVVVGVGR 17 (172)
T ss_dssp CCCCCSEEEEEECCSH
T ss_pred CCCCCCcEEEEEcCCH
Confidence 6788899999999885
No 10
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176 {Shewanella oneidensis [TaxId: 70863]}
Probab=7.24 E-value=85 Score=19.11 Aligned_cols=11 Identities=55% Similarity=0.824 Sum_probs=8.8
Q ss_pred hhHHHHHHHHH
Q 032807 32 DRGLLALGNIL 42 (133)
Q Consensus 32 Dr~lLalGNiL 42 (133)
|=.|+++||+.
T Consensus 24 DLSLMvLGN~v 34 (65)
T d2qtia1 24 DLSLMALGNCV 34 (65)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 66789999974
Done!