BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032808
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 21 SKRSRFQDELRNIENQVYEL--ETSYLQDIGQFGNAFKGFE----GFLSSGKNTSKLKNL 74
+K+ QD+L++ E+QV+E+ +++ G KG G LS GK+ + +
Sbjct: 606 TKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEAT 665
Query: 75 ELGVMMEDS 83
EL M++ S
Sbjct: 666 ELIKMLKTS 674
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 21 SKRSRFQDELRNIENQVYEL--ETSYLQDIGQFGNAFKGFE----GFLSSGKNTSKLKNL 74
+K+ QD+L++ E+QV+E+ +++ G KG G LS GK+ + +
Sbjct: 606 TKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEAT 665
Query: 75 ELGVMMEDS 83
EL M++ S
Sbjct: 666 ELIKMLKTS 674
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 59 EGFLSSGKNTSKLKNLELGVMMEDSIMALVGLRVETCLLTDRVNQRGEEW 108
E F +SG + L +GV + ++ A L E LL+D G +W
Sbjct: 83 EAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSD----SGRDW 128
>pdb|1Y1E|X Chain X, Human Formylglycine Generating Enzyme
pdb|1Y1H|X Chain X, Human Formylglycine Generating Enzyme, Oxidised Cys
Refined As Hydroperoxide
pdb|1Y1I|X Chain X, Hyuman Formylglycine Generating Enzyme, Reduced Form
Length = 311
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
E+ N E + + T YL + +FG++F FEG LS
Sbjct: 58 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 91
>pdb|1Y1F|X Chain X, Human Formylglycine Generating Enzyme With Cysteine
Sulfenic Acid
pdb|1Y1J|X Chain X, Human Formylglycine Generating Enzyme, Sulfonic
AcidDESULFURATED FORM
Length = 311
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
E+ N E + + T YL + +FG++F FEG LS
Sbjct: 58 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 91
>pdb|1Y1G|X Chain X, Human Formylglycine Generating Enzyme, Double Sulfonic
Acid Form
pdb|1Z70|X Chain X, 1.15a Resolution Structure Of The Formylglycine
Generating Enzyme Fge
Length = 311
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
E+ N E + + T YL + +FG++F FEG LS
Sbjct: 58 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 91
>pdb|2AII|X Chain X, Wild-Type Formylglycine Generating Enzyme Reacted With
Iodoacetamide
Length = 286
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
E+ N E + + T YL + +FG++F FEG LS
Sbjct: 45 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 78
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 34 ENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSKLKN 73
+N + +T L+ +FGN E LS N KL+N
Sbjct: 787 DNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRN 826
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 34 ENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSKLKN 73
+N + +T L+ +FGN E LS N KL+N
Sbjct: 787 DNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRN 826
>pdb|2AFY|X Chain X, Formylglycine Generating Enzyme C341s Mutant
Length = 286
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
E+ N E + + T YL + +FG++F FEG LS
Sbjct: 45 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 78
>pdb|2AFT|X Chain X, Formylglycine Generating Enzyme C336s Mutant
pdb|2AIJ|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
Bound To Substrate Peptide Ctpsr
pdb|2AIK|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
Bound To Substrate Peptide Lctpsra
pdb|2HI8|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
Bromide Co- Crystallization
pdb|2HIB|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
Iodide Co- Crystallization
Length = 286
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
E+ N E + + T YL + +FG++F FEG LS
Sbjct: 45 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,549,981
Number of Sequences: 62578
Number of extensions: 126392
Number of successful extensions: 341
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 14
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)