Query 032808
Match_columns 133
No_of_seqs 102 out of 168
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:12:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09340 NuA4: Histone acetylt 100.0 4E-36 8.6E-41 210.1 6.4 80 13-93 1-80 (80)
2 KOG3856 Uncharacterized conser 99.9 4.7E-27 1E-31 177.6 4.1 86 7-95 10-95 (135)
3 KOG3856 Uncharacterized conser 94.7 0.013 2.7E-07 45.1 0.8 78 21-103 31-118 (135)
4 TIGR02894 DNA_bind_RsfA transc 64.7 9.1 0.0002 30.4 3.5 37 9-45 106-142 (161)
5 PF13864 Enkurin: Calmodulin-b 63.5 11 0.00023 26.7 3.4 26 19-44 72-97 (98)
6 PRK00888 ftsB cell division pr 59.7 23 0.0005 25.6 4.6 41 8-48 28-70 (105)
7 PF03285 Paralemmin: Paralemmi 57.4 13 0.00029 31.7 3.5 35 13-47 2-36 (278)
8 PF14584 DUF4446: Protein of u 55.5 58 0.0013 25.2 6.5 57 7-65 39-95 (151)
9 PF14782 BBS2_C: Ciliary BBSom 55.4 27 0.00058 31.4 5.2 35 7-41 54-88 (431)
10 PF10146 zf-C4H2: Zinc finger- 54.6 24 0.00053 29.1 4.5 35 10-44 35-69 (230)
11 PF09403 FadA: Adhesion protei 52.0 4.3 9.2E-05 30.8 -0.3 49 11-64 56-104 (126)
12 KOG3564 GTPase-activating prot 50.7 71 0.0015 30.0 7.2 77 11-90 74-158 (604)
13 PF02403 Seryl_tRNA_N: Seryl-t 48.0 48 0.001 23.1 4.6 37 18-54 71-107 (108)
14 PTZ00464 SNF-7-like protein; P 47.5 45 0.00098 27.1 5.0 35 12-46 59-93 (211)
15 PRK05431 seryl-tRNA synthetase 45.2 32 0.0007 30.3 4.1 39 17-55 69-107 (425)
16 PF04111 APG6: Autophagy prote 43.9 45 0.00098 28.3 4.7 38 10-47 60-100 (314)
17 PTZ00446 vacuolar sorting prot 42.9 58 0.0013 26.3 4.9 34 13-46 66-99 (191)
18 COG4942 Membrane-bound metallo 42.0 29 0.00062 31.4 3.3 41 6-46 44-84 (420)
19 TIGR00414 serS seryl-tRNA synt 41.5 45 0.00097 29.4 4.4 40 16-55 71-110 (418)
20 KOG3129 26S proteasome regulat 40.6 43 0.00093 28.1 3.9 29 8-36 15-43 (231)
21 PF04977 DivIC: Septum formati 39.8 41 0.00088 21.7 3.0 41 7-47 17-59 (80)
22 PF10845 DUF2576: Protein of u 39.8 48 0.0011 21.5 3.2 22 22-43 12-33 (48)
23 PF08826 DMPK_coil: DMPK coile 38.9 93 0.002 20.8 4.7 30 10-39 28-57 (61)
24 PF02403 Seryl_tRNA_N: Seryl-t 37.6 85 0.0018 21.9 4.6 34 7-40 67-100 (108)
25 PF13600 DUF4140: N-terminal d 36.7 78 0.0017 21.9 4.2 27 13-39 69-95 (104)
26 PRK13182 racA polar chromosome 36.7 57 0.0012 25.8 3.9 27 18-44 119-148 (175)
27 PF12761 End3: Actin cytoskele 35.9 92 0.002 25.5 5.1 36 10-46 131-184 (195)
28 PF00170 bZIP_1: bZIP transcri 35.3 1.2E+02 0.0026 19.5 4.7 31 12-42 31-61 (64)
29 TIGR02976 phageshock_pspB phag 35.1 80 0.0017 21.9 4.0 29 7-35 35-63 (75)
30 PF14193 DUF4315: Domain of un 34.9 99 0.0021 21.9 4.5 34 10-43 4-37 (83)
31 TIGR03807 RR_fam_repeat putati 33.7 11 0.00025 21.7 -0.3 17 41-57 8-25 (27)
32 PF11461 RILP: Rab interacting 33.0 63 0.0014 21.8 3.1 34 13-46 2-35 (60)
33 PF04568 IATP: Mitochondrial A 32.3 1.3E+02 0.0028 22.0 4.9 29 14-42 69-97 (100)
34 PF05529 Bap31: B-cell recepto 31.1 1.1E+02 0.0025 23.5 4.7 32 13-44 160-191 (192)
35 PF01920 Prefoldin_2: Prefoldi 30.8 69 0.0015 21.7 3.2 25 19-43 67-91 (106)
36 PRK05771 V-type ATP synthase s 30.1 79 0.0017 29.0 4.3 31 11-41 97-127 (646)
37 PF05814 DUF843: Baculovirus p 30.1 56 0.0012 23.5 2.6 28 6-33 49-76 (83)
38 PF03148 Tektin: Tektin family 29.7 1.2E+02 0.0026 26.4 5.1 50 10-63 247-296 (384)
39 PF04380 BMFP: Membrane fusoge 29.4 1.5E+02 0.0033 20.2 4.7 18 25-42 61-78 (79)
40 TIGR02209 ftsL_broad cell divi 29.4 1.5E+02 0.0032 19.6 4.5 38 10-47 27-65 (85)
41 PF04568 IATP: Mitochondrial A 28.1 1.3E+02 0.0028 22.0 4.3 14 24-37 86-99 (100)
42 PF00611 FCH: Fes/CIP4, and EF 28.0 61 0.0013 21.2 2.4 51 14-64 26-76 (91)
43 TIGR01834 PHA_synth_III_E poly 28.0 1.1E+02 0.0023 26.8 4.5 32 11-42 286-317 (320)
44 PF04156 IncA: IncA protein; 27.7 1.5E+02 0.0032 22.5 4.8 34 14-47 81-114 (191)
45 cd04776 HTH_GnyR Helix-Turn-He 27.7 1.7E+02 0.0037 21.1 4.9 29 13-41 86-114 (118)
46 PF11180 DUF2968: Protein of u 27.7 1.6E+02 0.0035 24.1 5.2 33 11-43 151-183 (192)
47 TIGR00246 tRNA_RlmH_YbeA rRNA 27.6 17 0.00037 28.0 -0.4 18 80-97 114-131 (153)
48 PRK05892 nucleoside diphosphat 27.5 74 0.0016 24.5 3.1 21 6-26 10-30 (158)
49 PF13747 DUF4164: Domain of un 27.2 1.6E+02 0.0034 20.7 4.5 34 9-42 34-67 (89)
50 PRK09458 pspB phage shock prot 26.9 1.3E+02 0.0029 21.1 4.0 28 8-35 36-63 (75)
51 PRK03947 prefoldin subunit alp 26.6 1.8E+02 0.0039 21.2 5.0 34 12-45 4-37 (140)
52 COG4026 Uncharacterized protei 26.6 61 0.0013 27.8 2.6 31 14-44 170-200 (290)
53 PF02370 M: M protein repeat; 26.2 1.2E+02 0.0027 16.5 3.6 17 22-38 2-18 (21)
54 TIGR02338 gimC_beta prefoldin, 26.1 2E+02 0.0043 20.5 5.0 24 20-43 73-96 (110)
55 COG3937 Uncharacterized conser 26.1 1.2E+02 0.0026 22.8 3.8 32 12-43 66-105 (108)
56 PF06667 PspB: Phage shock pro 26.0 1.4E+02 0.0031 20.7 4.0 32 6-37 34-65 (75)
57 PRK13729 conjugal transfer pil 25.8 64 0.0014 29.7 2.8 36 8-43 77-119 (475)
58 PF13600 DUF4140: N-terminal d 25.5 1.9E+02 0.0042 19.9 4.7 33 7-39 70-102 (104)
59 KOG3231 Predicted assembly/vac 25.3 1.2E+02 0.0025 24.9 4.0 30 11-40 19-48 (208)
60 KOG2129 Uncharacterized conser 25.0 1.5E+02 0.0033 27.5 5.0 43 11-53 296-338 (552)
61 PF06428 Sec2p: GDP/GTP exchan 24.9 2.1E+02 0.0045 20.8 4.9 34 15-48 2-35 (100)
62 COG1579 Zn-ribbon protein, pos 24.9 86 0.0019 26.2 3.2 34 13-46 30-63 (239)
63 PF15466 DUF4635: Domain of un 24.5 2.1E+02 0.0046 22.1 5.0 33 10-42 82-119 (135)
64 smart00338 BRLZ basic region l 24.3 2E+02 0.0043 18.4 4.9 31 11-41 30-60 (65)
65 PF05384 DegS: Sensor protein 24.2 2.1E+02 0.0045 22.5 5.1 31 12-42 96-126 (159)
66 KOG3478 Prefoldin subunit 6, K 24.1 1E+02 0.0022 23.5 3.2 38 9-48 14-51 (120)
67 PF12329 TMF_DNA_bd: TATA elem 23.7 2.4E+02 0.0052 19.1 4.9 33 11-43 37-69 (74)
68 smart00055 FCH Fes/CIP4 homolo 23.4 95 0.0021 20.4 2.7 52 12-63 24-75 (87)
69 COG1382 GimC Prefoldin, chaper 23.3 2.2E+02 0.0048 21.5 4.9 31 11-41 17-47 (119)
70 PRK13729 conjugal transfer pil 22.8 75 0.0016 29.2 2.7 24 14-37 97-120 (475)
71 PF09932 DUF2164: Uncharacteri 22.8 1.7E+02 0.0037 20.2 3.9 24 18-41 51-74 (76)
72 PF09403 FadA: Adhesion protei 22.4 2.4E+02 0.0051 21.4 4.9 27 16-42 95-121 (126)
73 PLN02320 seryl-tRNA synthetase 22.3 1.2E+02 0.0027 27.9 4.0 40 16-55 132-171 (502)
74 PF11932 DUF3450: Protein of u 22.1 1.6E+02 0.0034 23.8 4.2 33 11-43 60-92 (251)
75 cd00632 Prefoldin_beta Prefold 21.8 2.4E+02 0.0051 19.8 4.6 27 15-41 71-97 (105)
76 PF11068 YlqD: YlqD protein; 21.7 2E+02 0.0043 21.8 4.4 39 5-43 10-49 (131)
77 PF10393 Matrilin_ccoil: Trime 21.4 2.3E+02 0.0051 18.1 4.2 24 14-37 23-46 (47)
78 PF14257 DUF4349: Domain of un 21.4 1.2E+02 0.0026 24.4 3.4 43 13-55 148-198 (262)
79 KOG4715 SWI/SNF-related matrix 21.3 1.1E+02 0.0023 27.4 3.3 45 12-56 226-270 (410)
80 TIGR00293 prefoldin, archaeal 21.1 1.7E+02 0.0037 20.8 3.8 31 96-126 90-120 (126)
81 PRK14127 cell division protein 20.7 2.3E+02 0.0051 20.9 4.5 31 13-43 36-66 (109)
82 COG1993 PII-like signaling pro 20.7 59 0.0013 24.4 1.3 30 50-91 38-67 (109)
83 PF11853 DUF3373: Protein of u 20.4 52 0.0011 30.3 1.2 14 24-37 34-47 (489)
84 KOG0544 FKBP-type peptidyl-pro 20.3 41 0.00088 25.2 0.4 14 50-63 52-65 (108)
85 PF06698 DUF1192: Protein of u 20.3 1.4E+02 0.0031 19.9 3.0 19 25-43 25-43 (59)
86 PRK05431 seryl-tRNA synthetase 20.2 1.6E+02 0.0035 26.0 4.2 32 8-39 67-98 (425)
No 1
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=100.00 E-value=4e-36 Score=210.07 Aligned_cols=80 Identities=31% Similarity=0.630 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCeeecCCccccCCCCccccccccCCCCCCCccccccchhh
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSKLKNLELGVMMEDSIMALVGLRV 92 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNIIKGFDgylks~~~s~~~krkr~~~~d~DRIFSlSS~t~ 92 (133)
|++|++++++|++|+++|+.||++||++||+||++++++||||||||||+++++.+++.+|++ +|+++|||||+||+||
T Consensus 1 k~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~GNiikGfd~y~k~~~~~~~~~~~~-~~~~~dRiFS~SS~t~ 79 (80)
T PF09340_consen 1 KKELKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYGNIIKGFDGYLKSSSGAANSRRKR-GFTDDDRIFSLSSVTS 79 (80)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCeeChhhhhccccccccccccC-CCCccccCcccccccC
Confidence 579999999999999999999999999999999999999999999999999977555556665 9999999999999999
Q ss_pred H
Q 032808 93 E 93 (133)
Q Consensus 93 ~ 93 (133)
|
T Consensus 80 ~ 80 (80)
T PF09340_consen 80 P 80 (80)
T ss_pred C
Confidence 7
No 2
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=4.7e-27 Score=177.58 Aligned_cols=86 Identities=26% Similarity=0.428 Sum_probs=78.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCeeecCCccccCCCCccccccccCCCCCCCcccc
Q 032808 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSKLKNLELGVMMEDSIMA 86 (133)
Q Consensus 7 ~~~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNIIKGFDgylks~~~s~~~krkr~~~~d~DRIFS 86 (133)
+.++++|+||+++|++|+++++.|+.||+|||++||+||++|+.+||||+||++|+++.+ .+.+|.+ +|.+.||+||
T Consensus 10 ~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~EgsYle~ts~~gniirG~e~~lksns--~n~rr~r-~f~eaerlfs 86 (135)
T KOG3856|consen 10 KSYEDTKAELAELIKKRQELEETLANLERQIYAFEGSYLEDTSNNGNIIRGWERYLKSNS--KNDRRNR-KFKEAERLFS 86 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCchhhhhhhhccccc--cchhhhc-cccHHHHHhh
Confidence 568899999999999999999999999999999999999999999999999999999932 2356666 8999999999
Q ss_pred ccchhhHhh
Q 032808 87 LVGLRVETC 95 (133)
Q Consensus 87 lSS~t~~~~ 95 (133)
.||++++..
T Consensus 87 ~ss~ss~~~ 95 (135)
T KOG3856|consen 87 KSSDSSFAN 95 (135)
T ss_pred hcccccccc
Confidence 999999764
No 3
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.013 Score=45.14 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------hhhhhccCCCCCeeecCCccccCCCCccccccccCCCCCCCccccccch
Q 032808 21 SKRSRFQDELRNIENQVYELE----------TSYLQDIGQFGNAFKGFEGFLSSGKNTSKLKNLELGVMMEDSIMALVGL 90 (133)
Q Consensus 21 ~kKk~Le~~L~~LE~qIYd~E----------t~YLeeT~~~GNIIKGFDgylks~~~s~~~krkr~~~~d~DRIFSlSS~ 90 (133)
..=..|+.++=.+|-.-+..= .-||...+..||+++||+.+-+..+.++. ..|...+|+|++||.
T Consensus 31 etl~nLe~qIY~~EgsYle~ts~~gniirG~e~~lksns~n~rr~r~f~eaerlfs~ss~-----ss~~~~sp~~al~s~ 105 (135)
T KOG3856|consen 31 ETLANLERQIYAFEGSYLEDTSNNGNIIRGWERYLKSNSKNDRRNRKFKEAERLFSKSSD-----SSFANNSPAFALSSD 105 (135)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCCCchhhhhhhhccccccchhhhccccHHHHHhhhccc-----ccccccCchhcccch
Confidence 334568888888887644332 35888777899999999999876432221 268899999999999
Q ss_pred hhHhhhhhhhhcc
Q 032808 91 RVETCLLTDRVNQ 103 (133)
Q Consensus 91 t~~~~L~~~~~~~ 103 (133)
|+...--.+..+.
T Consensus 106 t~t~~r~~~sq~~ 118 (135)
T KOG3856|consen 106 TYTKQRHGQSQND 118 (135)
T ss_pred hHHHHhccccccC
Confidence 9998755544443
No 4
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=64.66 E-value=9.1 Score=30.45 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032808 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELETSYL 45 (133)
Q Consensus 9 ~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YL 45 (133)
...++.++.+|..+=+.|++++..|++++...|..|=
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888999999999999888888884
No 5
>PF13864 Enkurin: Calmodulin-binding
Probab=63.49 E-value=11 Score=26.67 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032808 19 LVSKRSRFQDELRNIENQVYELETSY 44 (133)
Q Consensus 19 ll~kKk~Le~~L~~LE~qIYd~Et~Y 44 (133)
...+|..||.+|+.||+.|--+|..+
T Consensus 72 ~~~rK~~lE~~L~qlE~dI~~lsr~~ 97 (98)
T PF13864_consen 72 KKRRKEELEKELKQLEKDIKKLSRPK 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 45789999999999999998887643
No 6
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=59.65 E-value=23 Score=25.63 Aligned_cols=41 Identities=7% Similarity=0.103 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhcc
Q 032808 8 GNSNPAATLAALVSKRSRFQDELRNIENQVYELET--SYLQDI 48 (133)
Q Consensus 8 ~~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et--~YLeeT 48 (133)
.+.++++++.++.++-.+++.+-+.|+.+|..+.. .|+++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 46678888888888888999999999999999876 699864
No 7
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=57.36 E-value=13 Score=31.73 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLee 47 (133)
++++.+=.+|-+.||+.+..||++|-.||+.=+.-
T Consensus 2 rrQ~qEDEqKtR~LEesI~RLEkEIe~LE~~es~i 36 (278)
T PF03285_consen 2 RRQMQEDEQKTRSLEESIHRLEKEIEALENGESQI 36 (278)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 56788888999999999999999999999976553
No 8
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=55.51 E-value=58 Score=25.17 Aligned_cols=57 Identities=21% Similarity=0.421 Sum_probs=46.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCeeecCCccccCC
Q 032808 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSG 65 (133)
Q Consensus 7 ~~~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNIIKGFDgylks~ 65 (133)
.+..++...|.+....=..+.++++.++++|-.+|..--......| |+| ||.|...+
T Consensus 39 ~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvg-vvR-YnAF~dmG 95 (151)
T PF14584_consen 39 KDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVG-VVR-YNAFEDMG 95 (151)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEE-EEE-ccCccccc
Confidence 3455888899999999999999999999999999998887766666 554 77777653
No 9
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=55.42 E-value=27 Score=31.39 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 7 ~~~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
.+.......|++|.+||+.|..+|..+|.++-..+
T Consensus 54 ~~~~~~~~~lreL~qkKQ~Ll~EL~nyEe~~~~~~ 88 (431)
T PF14782_consen 54 VDASDEQEALRELSQKKQNLLLELRNYEENAKREK 88 (431)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34566778999999999999999999999998766
No 10
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=54.61 E-value=24 Score=29.06 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~Y 44 (133)
.+++++...|+..|....++|..|...|..+|..-
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999999988888888887654
No 11
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=52.02 E-value=4.3 Score=30.81 Aligned_cols=49 Identities=14% Similarity=0.390 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCeeecCCccccC
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSS 64 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNIIKGFDgylks 64 (133)
.+.++|.++.+.+..+++.+..|+.. -++.|+.+ .|+++++-|+.|.+.
T Consensus 56 ~a~~~L~~~~~~~~~i~e~~~kl~~~---~~~r~yk~--eYk~llk~y~~~~~~ 104 (126)
T PF09403_consen 56 AAEAELAELKELYAEIEEKIEKLKQD---SKVRWYKD--EYKELLKKYKDLLNK 104 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGSTTHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh---cchhHHHH--HHHHHHHHHHHHHHH
Confidence 45667777777777777777777664 77888887 488888888877653
No 12
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=50.67 E-value=71 Score=30.04 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCee-ecCCcccc-------CCCCccccccccCCCCCCC
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF-KGFEGFLS-------SGKNTSKLKNLELGVMMED 82 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNII-KGFDgylk-------s~~~s~~~krkr~~~~d~D 82 (133)
.+++.+...+++|+.++-+++.+|.+|-..---...+. .|||- .+=+.|.- ..+.++..++-. .+++.+
T Consensus 74 ha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~~~--~~s~~~~d~~~f~~~~~~~~~~~S~na~~k~l~-~~~~~g 150 (604)
T KOG3564|consen 74 HARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKCDI--SGSIQLSDEQKFALAFLNRGQPSSSNAGNKRLS-EIDESG 150 (604)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--ccccccchhhhhhhhccccCCccccccCCcccc-ccCCCc
Confidence 45688999999999999999999999998877777775 47773 35444432 222222223332 566666
Q ss_pred ccccccch
Q 032808 83 SIMALVGL 90 (133)
Q Consensus 83 RIFSlSS~ 90 (133)
-|.|-=|.
T Consensus 151 s~lSdis~ 158 (604)
T KOG3564|consen 151 SILSDISF 158 (604)
T ss_pred cccccCcc
Confidence 66665444
No 13
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.97 E-value=48 Score=23.15 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCe
Q 032808 18 ALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNA 54 (133)
Q Consensus 18 ~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNI 54 (133)
+++..-+.+.+++..+|.++-..|...-.--...+||
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPNi 107 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELNELLLSIPNI 107 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4444555566666666666666666655544556665
No 14
>PTZ00464 SNF-7-like protein; Provisional
Probab=47.54 E-value=45 Score=27.10 Aligned_cols=35 Identities=9% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLe 46 (133)
.+.....+|++|+.++..|.++..+++.+|.-...
T Consensus 59 ~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ 93 (211)
T PTZ00464 59 HKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFT 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788999999999999999999888887765
No 15
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=45.21 E-value=32 Score=30.32 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCee
Q 032808 17 AALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (133)
Q Consensus 17 ~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNII 55 (133)
.+++++-++|.+++..+|.+++..|....+.....+|++
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 345566677778888888888888887777655566665
No 16
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.94 E-value=45 Score=28.35 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=26.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhhhc
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYEL---ETSYLQD 47 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~---Et~YLee 47 (133)
..+.++|.++...+.++++++..+|.+..++ |..|+.+
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~ 100 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEELDEEEEEYWRE 100 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888776654 4455543
No 17
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=42.88 E-value=58 Score=26.31 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLe 46 (133)
+.....+|++|+.++..|.++..++..+|+.-+.
T Consensus 66 k~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~ 99 (191)
T PTZ00446 66 MSNAKILLKRKKLYEQEIENILNNRLTLEDNMIN 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356678888888888888777777777665544
No 18
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=42.02 E-value=29 Score=31.38 Aligned_cols=41 Identities=15% Similarity=0.373 Sum_probs=30.5
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032808 6 QRGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (133)
Q Consensus 6 q~~~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLe 46 (133)
|++.+.+.+++...-.++.+|+++|..+|..|-..|..-.+
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~ 84 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE 84 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777778888888888888888887777655
No 19
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=41.47 E-value=45 Score=29.37 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCee
Q 032808 16 LAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (133)
Q Consensus 16 L~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNII 55 (133)
..+++++-++|.+++..+|.+++.+|..+.+.....+|++
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~ 110 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIP 110 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4456666677888888888888888888877655566665
No 20
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=40.56 E-value=43 Score=28.11 Aligned_cols=29 Identities=14% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 8 GNSNPAATLAALVSKRSRFQDELRNIENQ 36 (133)
Q Consensus 8 ~~~~lk~eL~~ll~kKk~Le~~L~~LE~q 36 (133)
.-..++.++++|+.+|+++|.+|..+..-
T Consensus 15 ag~~~~~~~~eLm~~K~eiE~qin~~~~v 43 (231)
T KOG3129|consen 15 AGANTKSELKELMDKKTEIETQINELVEV 43 (231)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999888877653
No 21
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.80 E-value=41 Score=21.73 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=29.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhhc
Q 032808 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYEL--ETSYLQD 47 (133)
Q Consensus 7 ~~~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~--Et~YLee 47 (133)
..+..+++++.++..+-.++..+...|+.+|-.+ --+|++.
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3445667778888888888888888888888777 4566665
No 22
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=39.77 E-value=48 Score=21.51 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 032808 22 KRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 22 kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
.|.+|..+|..|-..+++++|.
T Consensus 12 dreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 12 DREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999985
No 23
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=38.93 E-value=93 Score=20.83 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYE 39 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd 39 (133)
-.+...|++.-.+.+.|..++..|+.++-.
T Consensus 28 ~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888888888888754
No 24
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=37.57 E-value=85 Score=21.85 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=28.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYEL 40 (133)
Q Consensus 7 ~~~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~ 40 (133)
.+.+.++++.+.+-.+-..++.++..+|.+++.+
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888898899999999999999998764
No 25
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=36.69 E-value=78 Score=21.91 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIYd 39 (133)
..++.+|-++.+.+++++..++.++..
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~ 95 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQA 95 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444545555555555555444433
No 26
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=36.69 E-value=57 Score=25.76 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhhh
Q 032808 18 ALVSKRSRFQD---ELRNIENQVYELETSY 44 (133)
Q Consensus 18 ~ll~kKk~Le~---~L~~LE~qIYd~Et~Y 44 (133)
+||+.|+++|+ .|.+||+.|..+|-.|
T Consensus 119 qll~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
No 27
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=35.94 E-value=92 Score=25.46 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHH-HHHHH-----------------HHHHHHHHHHHHHHHhhhhh
Q 032808 10 SNPAATLAALVS-KRSRF-----------------QDELRNIENQVYELETSYLQ 46 (133)
Q Consensus 10 ~~lk~eL~~ll~-kKk~L-----------------e~~L~~LE~qIYd~Et~YLe 46 (133)
.-+|.++.+||. |+++| .++|..||+||--+|. ||.
T Consensus 131 ~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~-~L~ 184 (195)
T PF12761_consen 131 ALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLES-HLS 184 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 446889999998 44444 5678999999988884 554
No 28
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.29 E-value=1.2e+02 Score=19.45 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
|...+..|...-..|..++..|+.++..+..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555543
No 29
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=35.10 E-value=80 Score=21.91 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=22.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 7 RGNSNPAATLAALVSKRSRFQDELRNIEN 35 (133)
Q Consensus 7 ~~~~~lk~eL~~ll~kKk~Le~~L~~LE~ 35 (133)
.-+.+-.+.|.+|..+=+.+++.+..||.
T Consensus 35 ~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 35 SLSTDDQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888875
No 30
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=34.87 E-value=99 Score=21.86 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
..+.+++...-.|+..++..|..||.+.-..|-.
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888877753
No 31
>TIGR03807 RR_fam_repeat putative cofactor-binding repeat. This model describes a small repeat found in a family of proteins that crosses the plasma membrane by twin-arginine translation, which usually signifies the presence of a bound cofactor. This repeat shows similarity to the beta-helical repeat, in which three beta-strands per repeat wind once per repeat around in a right-handed helical stack of parallel beta structure.
Probab=33.66 E-value=11 Score=21.67 Aligned_cols=17 Identities=29% Similarity=0.351 Sum_probs=12.9
Q ss_pred Hhhhhh-ccCCCCCeeec
Q 032808 41 ETSYLQ-DIGQFGNAFKG 57 (133)
Q Consensus 41 Et~YLe-eT~~~GNIIKG 57 (133)
.+-|++ ++.-.||+|++
T Consensus 8 ~G~y~~~d~~vsGNvIrn 25 (27)
T TIGR03807 8 WGIYLEFDAVVTGNVIRN 25 (27)
T ss_pred eEEEEeeeeEEecceecC
Confidence 355788 77788999975
No 32
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=33.00 E-value=63 Score=21.76 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLe 46 (133)
.++|++.|..|.+|...+-.||.++.-+-..=+.
T Consensus 2 l~ELr~VL~ERNeLK~~v~~leEEL~~yk~~~~~ 35 (60)
T PF11461_consen 2 LQELREVLQERNELKARVFLLEEELAYYKSELLP 35 (60)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3689999999999999999999887655443333
No 33
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=32.30 E-value=1.3e+02 Score=21.97 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 14 ATLAALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
.+-.+|-+-|++|+++...-+++|-++|-
T Consensus 69 ~EkEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566676666666666666653
No 34
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.10 E-value=1.1e+02 Score=23.51 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVYELETSY 44 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~Y 44 (133)
..+++++-+.=.+.+.+++.|-+|+-.++.+|
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444445555556666666665555
No 35
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.77 E-value=69 Score=21.70 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 19 LVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 19 ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
+-.+...++.++..|+.++-.++..
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~ 91 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKK 91 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 36
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=30.14 E-value=79 Score=29.05 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
++.+++.++.+++++|++++..+++++..+|
T Consensus 97 ~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 97 KIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677777788888888888887777665
No 37
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=30.12 E-value=56 Score=23.45 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.0
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 032808 6 QRGNSNPAATLAALVSKRSRFQDELRNI 33 (133)
Q Consensus 6 q~~~~~lk~eL~~ll~kKk~Le~~L~~L 33 (133)
+.++.++..+...-++||+++++.+++|
T Consensus 49 eS~~~dL~t~k~K~~KKK~~ln~afDAi 76 (83)
T PF05814_consen 49 ESTPQDLQTEKAKSIKKKRDLNDAFDAI 76 (83)
T ss_pred CCcHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 4566788888899999999999999876
No 38
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=29.67 E-value=1.2e+02 Score=26.35 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCeeecCCcccc
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNIIKGFDgylk 63 (133)
..+++.+.+...-|.+|+.+|..+.++|.+.|..+-.=- ..|..-+|++|
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~----~ai~~k~~~lk 296 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLE----KAIRDKEGPLK 296 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHhhHH
Confidence 457788899999999999999999999999998775421 23444456655
No 39
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=29.44 E-value=1.5e+02 Score=20.24 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032808 25 RFQDELRNIENQVYELET 42 (133)
Q Consensus 25 ~Le~~L~~LE~qIYd~Et 42 (133)
++...|+.||.+|..+|.
T Consensus 61 ~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 61 RTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 445677778888877774
No 40
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.40 E-value=1.5e+02 Score=19.59 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=27.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhc
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELE-TSYLQD 47 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~E-t~YLee 47 (133)
..+.+++..+.++..+++.+...|..+|..+- .+|++.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~ 65 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEK 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 35667788888888888888888888887743 344443
No 41
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=28.10 E-value=1.3e+02 Score=21.99 Aligned_cols=14 Identities=14% Similarity=0.506 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH
Q 032808 24 SRFQDELRNIENQV 37 (133)
Q Consensus 24 k~Le~~L~~LE~qI 37 (133)
....++|+.||+.|
T Consensus 86 ~~~~k~i~~le~~I 99 (100)
T PF04568_consen 86 EHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 33777888888877
No 42
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=28.01 E-value=61 Score=21.15 Aligned_cols=51 Identities=12% Similarity=0.282 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCeeecCCccccC
Q 032808 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSS 64 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNIIKGFDgylks 64 (133)
.+|.+.+++|..+|++.++-=..|...=..-.......|.+-..|+.+...
T Consensus 26 ~~l~~~~keRa~lE~~Yak~L~kl~~~~~~~~~~~~~~~t~~~~~~~~~~~ 76 (91)
T PF00611_consen 26 EELASFFKERASLEEEYAKSLQKLAKKFKKKMKSSQEYGTLKNAWDSLLEE 76 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHHH
Confidence 567788888888887655433333332222222223346666677666543
No 43
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=27.96 E-value=1.1e+02 Score=26.76 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
+.+.+|.++-++=.+|+++++.|+++|-++|.
T Consensus 286 PTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 286 PTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56788889999999999999999999888875
No 44
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=27.75 E-value=1.5e+02 Score=22.47 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 032808 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLee 47 (133)
.++.+....-..++++|..++..+++.+..+...
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888999999999999999999988864
No 45
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=27.72 E-value=1.7e+02 Score=21.08 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
..++.++.+++..|+.-++.|+..|..++
T Consensus 86 ~~~~~~l~~~~~~l~~~~~~L~~~~~~~~ 114 (118)
T cd04776 86 EKRRAELEQQRRDIDAALAELDAAEERCR 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 46
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=27.71 E-value=1.6e+02 Score=24.10 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
..+++...|-..|......|..|..+|-.+|..
T Consensus 151 q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 151 QARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999865
No 47
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=27.65 E-value=17 Score=28.03 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.2
Q ss_pred CCCccccccchhhHhhhh
Q 032808 80 MEDSIMALVGLRVETCLL 97 (133)
Q Consensus 80 d~DRIFSlSS~t~~~~L~ 97 (133)
..|..+|+|..|+|..|.
T Consensus 114 ~a~~~lSLS~mTfpH~la 131 (153)
T TIGR00246 114 AAEQSWSLSKLTLPHPLV 131 (153)
T ss_pred hcCceEEeecCCCcHHHH
Confidence 368899999999998764
No 48
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=27.46 E-value=74 Score=24.53 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=15.8
Q ss_pred cCCCCcHHHHHHHHHHHHHHH
Q 032808 6 QRGNSNPAATLAALVSKRSRF 26 (133)
Q Consensus 6 q~~~~~lk~eL~~ll~kKk~L 26 (133)
+.++..|+++|..|...|-++
T Consensus 10 ~eg~~~L~~EL~~L~~~r~~i 30 (158)
T PRK05892 10 PAARDHLEAELARLRARRDRL 30 (158)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 345678888998888777666
No 49
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=27.16 E-value=1.6e+02 Score=20.74 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 9 ~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
..++..++..|-..|..|..+|++.+...-.+|.
T Consensus 34 ~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~ 67 (89)
T PF13747_consen 34 RDELEEEIQRLDADRSRLAQELDQAEARANRLEE 67 (89)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Confidence 3678889999999999999999999988766654
No 50
>PRK09458 pspB phage shock protein B; Provisional
Probab=26.90 E-value=1.3e+02 Score=21.09 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 8 GNSNPAATLAALVSKRSRFQDELRNIEN 35 (133)
Q Consensus 8 ~~~~lk~eL~~ll~kKk~Le~~L~~LE~ 35 (133)
=+++=.+.|.+|..+=+++++.+..||.
T Consensus 36 Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 36 LSQEEQQRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567899999999999999999986
No 51
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.65 E-value=1.8e+02 Score=21.18 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYL 45 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YL 45 (133)
...+|.+++...+++..++..|..+|-.++..--
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 37 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASIN 37 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777666543
No 52
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.56 E-value=61 Score=27.76 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032808 14 ATLAALVSKRSRFQDELRNIENQVYELETSY 44 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~Y 44 (133)
..|+.+-.....|++.+..++.++|++++.+
T Consensus 170 erlk~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 170 ERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 3333333344444444455555566665544
No 53
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=26.21 E-value=1.2e+02 Score=16.55 Aligned_cols=17 Identities=6% Similarity=0.292 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032808 22 KRSRFQDELRNIENQVY 38 (133)
Q Consensus 22 kKk~Le~~L~~LE~qIY 38 (133)
.|++||.++.+||.+--
T Consensus 2 akk~lEa~~qkLe~e~q 18 (21)
T PF02370_consen 2 AKKQLEADHQKLEAEKQ 18 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 46778888888876643
No 54
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.09 E-value=2e+02 Score=20.46 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 20 VSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 20 l~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
-.+...++..+..|++++-.++..
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~ 96 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQ 96 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 55
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=26.06 E-value=1.2e+02 Score=22.80 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhh
Q 032808 12 PAATLAALVSKR--------SRFQDELRNIENQVYELETS 43 (133)
Q Consensus 12 lk~eL~~ll~kK--------k~Le~~L~~LE~qIYd~Et~ 43 (133)
.+..++.++.+= ..+..++..||+||.++|..
T Consensus 66 ~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 66 IPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred hhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555543 46778888899998888854
No 56
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=26.05 E-value=1.4e+02 Score=20.74 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=24.0
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 6 QRGNSNPAATLAALVSKRSRFQDELRNIENQV 37 (133)
Q Consensus 6 q~~~~~lk~eL~~ll~kKk~Le~~L~~LE~qI 37 (133)
+.-+++-.+.|.+|..+=+.+++.+..||.=+
T Consensus 34 ~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 34 QGLSEEDEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567888888888888888888888643
No 57
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.78 E-value=64 Score=29.67 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 8 GNSNPAATLAAL-------VSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 8 ~~~~lk~eL~~l-------l~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
..++|.++|.++ -+++..++.+|..+|.+|-.++..
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555544 355566777777777777777666
No 58
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.55 E-value=1.9e+02 Score=19.86 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=27.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (133)
Q Consensus 7 ~~~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd 39 (133)
.....|+++|+++..++..+..++..++.+|--
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678889999999999999999999988754
No 59
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.35 E-value=1.2e+02 Score=24.93 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYEL 40 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~ 40 (133)
+|++.-+++...|+++|++-.+||.+|-.+
T Consensus 19 eLRkt~RdierdRr~me~~Ek~LElEIkk~ 48 (208)
T KOG3231|consen 19 ELRKTQRDIERDRRAMEKQEKQLELEIKKM 48 (208)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788999999999999999988765
No 60
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=25.00 E-value=1.5e+02 Score=27.53 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGN 53 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GN 53 (133)
.+..+|..-+.+|..|-..|..-|..+--.|..||++...+|.
T Consensus 296 rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~~~g~ 338 (552)
T KOG2129|consen 296 RLQRKLINELERREALCRMLSESESSLEMDEERYLNEFVDFGD 338 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCC
Confidence 4567788888899889999999999999999999998766664
No 61
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=24.86 E-value=2.1e+02 Score=20.81 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 032808 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (133)
Q Consensus 15 eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT 48 (133)
+|.+-..+|..++.....|+.+|-++-++-|++.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEA 35 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEA 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888888888888888888888873
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.85 E-value=86 Score=26.24 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLe 46 (133)
++.|..+...+..+-+.+..++..+-++|+.+..
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~ 63 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQ 63 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555544443
No 63
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=24.53 E-value=2.1e+02 Score=22.11 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=23.2
Q ss_pred CcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Q 032808 10 SNPAATLAALVSK-----RSRFQDELRNIENQVYELET 42 (133)
Q Consensus 10 ~~lk~eL~~ll~k-----Kk~Le~~L~~LE~qIYd~Et 42 (133)
+++-+-++..++. -.+||+++..||+.+-|+|-
T Consensus 82 eEPik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~ 119 (135)
T PF15466_consen 82 EEPIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEE 119 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544443 36789999999999999984
No 64
>smart00338 BRLZ basic region leucin zipper.
Probab=24.31 E-value=2e+02 Score=18.36 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
+|..++..|...-..|..++..|+.+|..+.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443
No 65
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.19 E-value=2.1e+02 Score=22.46 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
++.+-..|..+|..|+..|..++.-|-.-|.
T Consensus 96 ~re~E~qLr~rRD~LErrl~~l~~tierAE~ 126 (159)
T PF05384_consen 96 LREREKQLRERRDELERRLRNLEETIERAEN 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999988776
No 66
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=24.10 E-value=1e+02 Score=23.49 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=26.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 032808 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (133)
Q Consensus 9 ~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT 48 (133)
+.+|.++|...+.-|++|+.+|. |..|-..|-.-|++.
T Consensus 14 yq~LQk~l~k~~~~rqkle~qL~--Enk~V~~Eldlle~d 51 (120)
T KOG3478|consen 14 YQNLQKELEKYVESRQKLETQLQ--ENKIVLEELDLLEED 51 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhccc
Confidence 34566677777777777777764 667777788888764
No 67
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=23.73 E-value=2.4e+02 Score=19.09 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
+|++...++-..-..+.+.+..++..|-+++..
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666677777777777777666644
No 68
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=23.35 E-value=95 Score=20.39 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCeeecCCcccc
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNIIKGFDgylk 63 (133)
+-+++...+++|.++|++..+-=..|...=...-.....+|.+-+.|+.++.
T Consensus 24 ~~~~~~~f~~~Ra~iE~eYak~L~kL~~~~~~~~~~~~~~~s~~~aw~~~~~ 75 (87)
T smart00055 24 LLEDLKKFIRERAKIEEEYAKKLQKLSKKLRAVRDTESEYGSLSKSWEVLLS 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHHHHHH
Confidence 3467888888998888875554444443201111122344555455655544
No 69
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.31 E-value=2.2e+02 Score=21.51 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
.+..+|..++..|.+++.+|..+++=+-++|
T Consensus 17 qLq~ql~~~~~qk~~le~qL~E~~~al~Ele 47 (119)
T COG1382 17 QLQQQLQKVILQKQQLEAQLKEIEKALEELE 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666677777777777776666555544
No 70
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.80 E-value=75 Score=29.24 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 14 ATLAALVSKRSRFQDELRNIENQV 37 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qI 37 (133)
+++.++.++=++++.++..|+.|+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666666
No 71
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=22.75 E-value=1.7e+02 Score=20.21 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 18 ALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 18 ~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
.+..-++-+.+.++.|+..||.+|
T Consensus 51 gv~DA~~~~~~r~~~l~~~ly~lE 74 (76)
T PF09932_consen 51 GVQDAQAVLEERMEDLEEELYELE 74 (76)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhh
Confidence 344566778889999999999987
No 72
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=22.44 E-value=2.4e+02 Score=21.37 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 16 LAALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 16 L~~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
|+..-.-+++|+++++.-|+.|.++|.
T Consensus 95 lk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 95 LKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445578899999999999999884
No 73
>PLN02320 seryl-tRNA synthetase
Probab=22.25 E-value=1.2e+02 Score=27.86 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCee
Q 032808 16 LAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (133)
Q Consensus 16 L~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNII 55 (133)
..+++++=+.|.++|..||.++...|....+.-....|++
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~ 171 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMT 171 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3455555566777777777777777776665444444544
No 74
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.12 E-value=1.6e+02 Score=23.75 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
.+.+++..+-...+++++.++.++++|-+++..
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444443
No 75
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=21.76 E-value=2.4e+02 Score=19.79 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 15 TLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 15 eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
.+..+-..-+.+++++..+++++-+++
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 76
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=21.75 E-value=2e+02 Score=21.83 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=28.4
Q ss_pred ccCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 5 QQRGNSNPAATLA-ALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 5 ~q~~~~~lk~eL~-~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
++.-|+..|.+|. ++.+....+|.+|..||-+.-..+.+
T Consensus 10 K~ivTe~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e 49 (131)
T PF11068_consen 10 KAIVTEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKE 49 (131)
T ss_dssp EEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777766 67777888999999999887777766
No 77
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=21.41 E-value=2.3e+02 Score=18.07 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 14 ATLAALVSKRSRFQDELRNIENQV 37 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qI 37 (133)
..|..|-.+=..+.+.|..||.+|
T Consensus 23 ~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 23 SALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555544455566666666554
No 78
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.38 E-value=1.2e+02 Score=24.39 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHh--hhhhccCCCCCee
Q 032808 13 AATLAALVSKRS------RFQDELRNIENQVYELET--SYLQDIGQFGNAF 55 (133)
Q Consensus 13 k~eL~~ll~kKk------~Le~~L~~LE~qIYd~Et--~YLeeT~~~GNII 55 (133)
+..|.+++.+-. +++.+|..++.+|-.+|+ .||++-..+..|-
T Consensus 148 ~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~ 198 (262)
T PF14257_consen 148 EERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTIT 198 (262)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEE
Confidence 345555555433 566777888888877776 4788766666663
No 79
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=21.30 E-value=1.1e+02 Score=27.45 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCeee
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFK 56 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNIIK 56 (133)
|+.+...|.-..++||.+|..||..--++-..+|+.|-.+-|-+|
T Consensus 226 lkrQv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLK 270 (410)
T KOG4715|consen 226 LKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELK 270 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 678888899999999999999999988888889987755555444
No 80
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.07 E-value=1.7e+02 Score=20.81 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=16.0
Q ss_pred hhhhhhccccccccccchhchHHHHHHHHHH
Q 032808 96 LLTDRVNQRGEEWHRHQEMGRETGQQVNQIL 126 (133)
Q Consensus 96 L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 126 (133)
.+..++..-.+.+..=+..-.+...++++|.
T Consensus 90 ~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 90 FLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444444455555555666553
No 81
>PRK14127 cell division protein GpsB; Provisional
Probab=20.70 E-value=2.3e+02 Score=20.93 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
-.++..+......|.+++..|+.+|-+++..
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666677777777777777777776663
No 82
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=20.66 E-value=59 Score=24.42 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=21.0
Q ss_pred CCCCeeecCCccccCCCCccccccccCCCCCCCccccccchh
Q 032808 50 QFGNAFKGFEGFLSSGKNTSKLKNLELGVMMEDSIMALVGLR 91 (133)
Q Consensus 50 ~~GNIIKGFDgylks~~~s~~~krkr~~~~d~DRIFSlSS~t 91 (133)
..-.+++|+-||.+.+. --.+.||.+|.-.
T Consensus 38 ~GATVlRGI~GfG~~~~------------~h~~~if~Ls~~L 67 (109)
T COG1993 38 RGATVLRGIAGFGKDGK------------IHGSKIFRLSTDL 67 (109)
T ss_pred CceeeeeeeeccCCCCc------------ccccchhhccCCC
Confidence 44568999999988732 2246789888643
No 83
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.40 E-value=52 Score=30.32 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 032808 24 SRFQDELRNIENQV 37 (133)
Q Consensus 24 k~Le~~L~~LE~qI 37 (133)
.+|+++|++|++|+
T Consensus 34 e~L~kql~~Lk~q~ 47 (489)
T PF11853_consen 34 EALKKQLEELKAQQ 47 (489)
T ss_pred HHHHHHHHHHHHhh
Confidence 33333344444443
No 84
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.28 E-value=41 Score=25.18 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=10.6
Q ss_pred CCCCeeecCCcccc
Q 032808 50 QFGNAFKGFEGFLS 63 (133)
Q Consensus 50 ~~GNIIKGFDgylk 63 (133)
.-|-||||||.=.-
T Consensus 52 GkgeVIkGwdegv~ 65 (108)
T KOG0544|consen 52 GKGEVIKGWDEGVA 65 (108)
T ss_pred cCcceeechhhcch
Confidence 46889999986543
No 85
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.27 E-value=1.4e+02 Score=19.90 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032808 25 RFQDELRNIENQVYELETS 43 (133)
Q Consensus 25 ~Le~~L~~LE~qIYd~Et~ 43 (133)
.|++.++.|+.+|...|+.
T Consensus 25 EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAA 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666553
No 86
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.20 E-value=1.6e+02 Score=25.96 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 8 GNSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (133)
Q Consensus 8 ~~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd 39 (133)
+.++++++.+++-++-+.+++++..+|.+|.+
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999999999999999987
Done!