Query 032808
Match_columns 133
No_of_seqs 102 out of 168
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:46:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3he4_A Synzip6; heterodimeric 78.8 2.2 7.4E-05 27.2 3.4 30 14-43 24-53 (56)
2 4abm_A Charged multivesicular 69.5 9.6 0.00033 25.5 5.1 31 13-43 44-74 (79)
3 2oqq_A Transcription factor HY 59.9 17 0.0006 22.1 4.4 30 13-42 2-31 (42)
4 1kd8_A GABH AIV, GCN4 acid bas 58.6 26 0.00089 20.7 4.9 31 11-41 5-35 (36)
5 3ra3_B P2F; coiled coil domain 58.0 12 0.0004 20.8 3.1 25 17-41 3-27 (28)
6 2zvf_A Alanyl-tRNA synthetase; 57.0 26 0.00088 25.1 5.8 38 10-47 28-66 (171)
7 2fxo_A Myosin heavy chain, car 56.0 16 0.00056 25.9 4.5 30 14-43 97-126 (129)
8 2yy0_A C-MYC-binding protein; 54.0 6 0.00021 24.8 1.6 32 7-38 19-50 (53)
9 4etp_A Kinesin-like protein KA 52.8 18 0.00061 30.4 4.9 40 8-47 4-43 (403)
10 2pnv_A Small conductance calci 51.1 34 0.0012 20.7 4.7 28 16-43 11-38 (43)
11 2akf_A Coronin-1A; coiled coil 50.5 33 0.0011 19.6 4.6 28 11-38 3-30 (32)
12 3c3g_A Alpha/beta peptide with 47.3 30 0.001 20.1 3.8 25 11-35 4-28 (33)
13 3ljm_A Coil Ser L9C; de novo d 46.1 39 0.0013 19.1 4.2 25 18-42 5-29 (31)
14 2l5g_B Putative uncharacterize 43.4 37 0.0013 20.7 3.9 24 18-41 6-29 (42)
15 2bni_A General control protein 41.9 40 0.0014 19.7 3.8 25 11-35 5-29 (34)
16 1l8d_A DNA double-strand break 41.7 45 0.0015 22.4 4.7 33 12-44 69-101 (112)
17 2r2v_A GCN4 leucine zipper; co 41.2 50 0.0017 19.2 4.1 25 11-35 5-29 (34)
18 1wt6_A Myotonin-protein kinase 40.5 49 0.0017 22.7 4.7 29 12-40 43-71 (81)
19 2zqm_A Prefoldin beta subunit 40.3 41 0.0014 22.5 4.3 26 18-43 74-99 (117)
20 1ses_A Seryl-tRNA synthetase; 39.9 48 0.0016 27.9 5.5 42 14-55 64-105 (421)
21 1a93_B MAX protein, coiled coi 39.6 56 0.0019 19.0 4.6 30 12-41 5-34 (34)
22 2q6q_A Spindle POLE BODY compo 39.2 67 0.0023 21.6 5.1 38 11-48 28-65 (74)
23 3q8t_A Beclin-1; autophagy, AT 38.9 62 0.0021 22.1 5.1 38 11-48 22-62 (96)
24 1ic2_A Tropomyosin alpha chain 37.5 81 0.0028 20.5 5.4 32 12-43 25-56 (81)
25 2eqb_B RAB guanine nucleotide 37.1 76 0.0026 22.2 5.4 38 10-47 29-66 (97)
26 1gp8_A Protein (scaffolding pr 36.8 19 0.00066 21.7 1.9 13 27-39 7-19 (40)
27 3u06_A Protein claret segregat 36.4 55 0.0019 27.7 5.4 37 10-46 6-42 (412)
28 3hnw_A Uncharacterized protein 36.2 70 0.0024 23.2 5.3 28 16-43 105-132 (138)
29 3etw_A Adhesin A; antiparallel 35.9 63 0.0022 23.3 4.9 28 16-43 77-104 (119)
30 3s4r_A Vimentin; alpha-helix, 35.5 54 0.0018 22.3 4.3 32 10-41 59-90 (93)
31 1fxk_A Prefoldin; archaeal pro 35.5 52 0.0018 21.7 4.2 27 17-43 68-94 (107)
32 2aze_B Transcription factor E2 34.7 63 0.0022 22.5 4.7 33 10-42 9-41 (106)
33 3c3f_A Alpha/beta peptide with 34.7 62 0.0021 18.8 3.8 25 11-35 5-29 (34)
34 1rtm_1 Mannose-binding protein 34.3 59 0.002 22.1 4.5 25 12-36 2-26 (149)
35 1t3j_A Mitofusin 1; coiled coi 34.2 93 0.0032 21.7 5.4 38 6-43 31-69 (96)
36 2avr_X Adhesion A; antiparalle 33.3 6.1 0.00021 28.9 -0.9 49 10-63 37-85 (119)
37 3u1c_A Tropomyosin alpha-1 cha 33.1 97 0.0033 21.1 5.4 33 11-43 27-59 (101)
38 1nkp_B MAX protein, MYC proto- 32.5 46 0.0016 21.6 3.5 26 16-41 49-74 (83)
39 3he5_B Synzip2; heterodimeric 32.3 91 0.0031 19.3 5.3 25 19-43 22-46 (52)
40 1wle_A Seryl-tRNA synthetase; 32.3 68 0.0023 27.9 5.4 41 15-55 117-157 (501)
41 2gkw_A TNF receptor-associated 31.5 51 0.0017 24.2 3.9 34 11-44 4-37 (192)
42 2wuj_A Septum site-determining 31.2 40 0.0014 20.9 2.8 25 13-37 33-57 (57)
43 2dq0_A Seryl-tRNA synthetase; 31.0 62 0.0021 27.6 4.9 38 18-55 73-110 (455)
44 3hnw_A Uncharacterized protein 30.7 75 0.0026 23.0 4.7 27 14-40 68-94 (138)
45 3cve_A Homer protein homolog 1 30.7 90 0.0031 20.7 4.6 30 10-39 3-32 (72)
46 2wq1_A General control protein 30.4 81 0.0028 18.2 3.8 23 12-34 5-27 (33)
47 1gmj_A ATPase inhibitor; coile 29.6 1E+02 0.0036 21.1 4.9 28 15-42 38-65 (84)
48 1uo4_A General control protein 29.3 85 0.0029 18.2 3.8 24 11-34 5-28 (34)
49 1kd8_B GABH BLL, GCN4 acid bas 29.2 84 0.0029 18.5 3.8 27 11-37 5-31 (36)
50 2lr4_A SPBC2 prophage-derived 35.3 12 0.00039 27.7 0.0 15 51-65 83-97 (128)
51 1zme_C Proline utilization tra 28.7 74 0.0025 19.2 3.8 24 14-37 44-67 (70)
52 2zqm_A Prefoldin beta subunit 28.5 1.3E+02 0.0045 19.9 5.5 29 12-40 82-110 (117)
53 3qne_A Seryl-tRNA synthetase, 28.4 72 0.0025 27.8 4.9 38 18-55 75-112 (485)
54 3u59_A Tropomyosin beta chain; 27.6 1.4E+02 0.0047 20.1 5.4 33 11-43 27-59 (101)
55 2kjs_A Putative acyl carrier p 27.1 4.3 0.00015 27.0 -2.5 82 28-111 5-86 (87)
56 3lss_A Seryl-tRNA synthetase; 27.0 65 0.0022 28.1 4.3 36 20-55 109-145 (484)
57 3twe_A Alpha4H; unknown functi 26.1 83 0.0029 17.2 3.2 21 11-31 5-25 (27)
58 3mq9_A Bone marrow stromal ant 25.6 1.1E+02 0.0037 25.0 5.3 32 12-43 434-465 (471)
59 3nmd_A CGMP dependent protein 25.4 1.5E+02 0.0052 19.7 5.0 29 14-42 22-54 (72)
60 3u06_A Protein claret segregat 25.3 97 0.0033 26.1 5.0 34 10-43 13-46 (412)
61 1l8d_A DNA double-strand break 24.7 1E+02 0.0034 20.5 4.2 30 12-41 15-44 (112)
62 2oxj_A Hybrid alpha/beta pepti 24.6 1.1E+02 0.0038 17.8 3.8 25 11-35 5-29 (34)
63 3swk_A Vimentin; cytoskeleton, 24.4 1.6E+02 0.0054 19.6 5.1 38 10-47 3-40 (86)
64 2e50_A Protein SET; histone ch 23.9 1.6E+02 0.0054 22.8 5.7 39 8-46 20-62 (225)
65 3kin_B Kinesin heavy chain; mo 23.8 90 0.0031 21.8 3.9 29 10-38 85-113 (117)
66 2lw1_A ABC transporter ATP-bin 23.4 97 0.0033 20.4 3.8 21 24-44 25-45 (89)
67 1go4_E MAD1 (mitotic arrest de 22.7 75 0.0026 22.3 3.3 28 10-37 15-42 (100)
68 3tkl_B LIDA protein, substrate 22.6 18 0.00062 29.4 0.0 38 9-46 23-60 (267)
69 1j1d_B Troponin T, TNT; THIN f 22.3 1.3E+02 0.0043 21.2 4.4 27 18-44 46-72 (106)
70 3m48_A General control protein 22.2 1.2E+02 0.0042 17.4 3.6 24 11-34 4-27 (33)
71 3na7_A HP0958; flagellar bioge 22.1 66 0.0022 24.9 3.2 31 7-37 90-120 (256)
72 4dci_A Uncharacterized protein 22.1 1.4E+02 0.0047 22.3 4.8 40 5-44 19-59 (150)
73 3viq_A SWI5-dependent recombin 21.9 1.2E+02 0.0041 21.7 4.3 26 18-43 4-29 (122)
74 3gp4_A Transcriptional regulat 21.8 1.8E+02 0.006 20.5 5.2 22 18-39 92-113 (142)
75 1fmh_A General control protein 21.7 1E+02 0.0035 17.5 3.1 16 26-41 6-21 (33)
76 2hy6_A General control protein 21.5 1.3E+02 0.0044 17.4 3.8 25 11-35 5-29 (34)
77 3qao_A LMO0526 protein, MERR-l 21.4 1.3E+02 0.0046 23.2 4.8 32 11-42 80-111 (249)
78 1ytz_T Troponin T; muscle, THI 21.2 1.2E+02 0.004 21.4 4.1 26 19-44 47-72 (107)
79 1fxk_A Prefoldin; archaeal pro 21.1 1.8E+02 0.0061 18.9 5.5 28 12-39 77-104 (107)
80 3cvf_A Homer-3, homer protein 21.1 1.3E+02 0.0044 20.2 4.1 31 9-39 8-38 (79)
81 3gpv_A Transcriptional regulat 21.0 1.4E+02 0.0048 21.1 4.6 19 20-38 101-119 (148)
82 3rrk_A V-type ATPase 116 kDa s 20.4 1.4E+02 0.0047 23.6 4.8 26 11-36 103-128 (357)
83 2v66_B Nuclear distribution pr 20.4 2.2E+02 0.0074 20.2 5.4 35 10-44 38-72 (111)
84 1jnm_A Proto-oncogene C-JUN; B 20.3 1.4E+02 0.0049 18.3 3.9 26 13-38 28-53 (62)
85 2ocy_A RAB guanine nucleotide 20.3 1.6E+02 0.0055 22.0 4.8 37 11-47 62-98 (154)
86 2wt7_A Proto-oncogene protein 20.2 1.7E+02 0.0056 18.2 4.9 32 11-42 27-58 (63)
87 1r8d_A Transcription activator 20.1 1.6E+02 0.0055 19.5 4.5 21 20-40 81-101 (109)
No 1
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=78.82 E-value=2.2 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 14 ATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
.-...|-..-..|+++++.||+.|.++|..
T Consensus 24 nivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 24 NIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 334444455667888888888888888854
No 2
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=69.54 E-value=9.6 Score=25.55 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
+..-..+|++|+..|..|..++.+|..+|..
T Consensus 44 K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q 74 (79)
T 4abm_A 44 KRAALQALKRKKRYEKQLAQIDGTLSTIEFQ 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444567888999999999999999998864
No 3
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.86 E-value=17 Score=22.14 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
|+-|.+|-.+.+.|+...+.||..|--++.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999877654
No 4
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.56 E-value=26 Score=20.72 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
.|..+..+|+.++..|+++.+.|..-+-..|
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 4778889999999999999999988776655
No 5
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=57.99 E-value=12 Score=20.79 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 17 AALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 17 ~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
+.+-++-..|..+++.||-+|..+|
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 3455666778888999999888876
No 6
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=57.00 E-value=26 Score=25.09 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhc
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETS-YLQD 47 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~-YLee 47 (133)
.++...+..|+...+.+++++..+..++...+.. ++.+
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~ 66 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMER 66 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999988754 4443
No 7
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=56.03 E-value=16 Score=25.94 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 14 ATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
....+|...|+.++.++..|+.+|-++|.+
T Consensus 97 e~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 97 EMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567778888888888888888887764
No 8
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.97 E-value=6 Score=24.78 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=25.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVY 38 (133)
Q Consensus 7 ~~~~~lk~eL~~ll~kKk~Le~~L~~LE~qIY 38 (133)
.+++.|++++.+|..+-..|.+++..+..++-
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888888888888888888888887654
No 9
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=52.84 E-value=18 Score=30.42 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=34.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 032808 8 GNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (133)
Q Consensus 8 ~~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLee 47 (133)
....++.+++.+.+++.+|+.++..++.++-+++..|.++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999888875
No 10
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=51.14 E-value=34 Score=20.69 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 16 LAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 16 L~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
+.++-.+...||+++..||.++-++...
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4577788899999999999998877654
No 11
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=50.52 E-value=33 Score=19.58 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVY 38 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIY 38 (133)
.|..+++.|..--++|++.++.||+-+-
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888999999999999999998664
No 12
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=47.31 E-value=30 Score=20.08 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIEN 35 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~ 35 (133)
.|..+..+|+.++..|+++.+.|-.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4677889999999999999888754
No 13
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=46.14 E-value=39 Score=19.05 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 18 ALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 18 ~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
++-++=..|+..|..||+.+..+|.
T Consensus 5 alekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445556677777777777766663
No 14
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.44 E-value=37 Score=20.67 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 18 ALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 18 ~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
+|+++=..++.+++..|++|.++-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999998764
No 15
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=41.91 E-value=40 Score=19.65 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIEN 35 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~ 35 (133)
.|..++.+|+.++..|+++++.|-.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4678899999999999999888753
No 16
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.73 E-value=45 Score=22.37 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~Y 44 (133)
...++.++...-..|...+..++..|..++..|
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666676777777777777777777776665
No 17
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=41.21 E-value=50 Score=19.23 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIEN 35 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~ 35 (133)
.+..++.+++.++..|+++++.|-.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3667888888888888888887754
No 18
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.50 E-value=49 Score=22.65 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~ 40 (133)
+..+|++..++-+.|..++..++.++.++
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999998883
No 19
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=40.28 E-value=41 Score=22.52 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 18 ALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 18 ~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
.+-.++..++..+..|+.++-.++..
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 20
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=39.95 E-value=48 Score=27.91 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCee
Q 032808 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNII 55 (133)
.+..+++++-+.|.+++..+|.++..+|....+.-...+|++
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 105 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 455677888888899999999999999888876555566665
No 21
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=39.57 E-value=56 Score=19.00 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
.+++-.+..+.=..|..+-+.||.||..+|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 455666666666777777788888887766
No 22
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=39.24 E-value=67 Score=21.57 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT 48 (133)
.++.+|.....--++|++++...+..|-++|-.-=++.
T Consensus 28 slR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~~ 65 (74)
T 2q6q_A 28 TLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDAN 65 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccccc
Confidence 36788888888889999999999999999997755543
No 23
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=38.87 E-value=62 Score=22.08 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhhhcc
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYEL---ETSYLQDI 48 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~---Et~YLeeT 48 (133)
.+.++|.++-+.+..++.+|..++.+...+ |..|+.+.
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~ey 62 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREY 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456788888999999999999888876544 56677653
No 24
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=37.54 E-value=81 Score=20.50 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
+..+|++.-.+..+++.++..|.+.|-.+|..
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666655544
No 25
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.09 E-value=76 Score=22.25 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLee 47 (133)
..|..+|.+-..+|...+.....||.++-++=++-|++
T Consensus 29 ~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeE 66 (97)
T 2eqb_B 29 KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 66 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777888888899999999999998888876
No 26
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=36.79 E-value=19 Score=21.71 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 032808 27 QDELRNIENQVYE 39 (133)
Q Consensus 27 e~~L~~LE~qIYd 39 (133)
.+.++.||+|||-
T Consensus 7 ~d~I~aiEQqiyv 19 (40)
T 1gp8_A 7 AANKDAIRKQMDA 19 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999985
No 27
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.40 E-value=55 Score=27.65 Aligned_cols=37 Identities=5% Similarity=0.045 Sum_probs=23.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLe 46 (133)
..|+.+|.++.+++++|+.++..++.++-.++..++.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777766666666666555555544
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.21 E-value=70 Score=23.20 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 16 LAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 16 L~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
+.++.+....|.+++..|+.+|-.+|++
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666666666666654
No 29
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=35.87 E-value=63 Score=23.34 Aligned_cols=28 Identities=7% Similarity=0.175 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 16 LAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 16 L~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
++++-.-+++|++++...|+-|.+||--
T Consensus 77 ~k~Y~~~~keLd~~ik~qekiIdnFE~i 104 (119)
T 3etw_A 77 ASKYEDALKKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667889999999999999999863
No 30
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=35.49 E-value=54 Score=22.26 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
.+|++++.++...|..|+-+++.+...++++-
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888889989988888887753
No 31
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.47 E-value=52 Score=21.65 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 17 AALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 17 ~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
..+-.++..++..+..||.++-.++..
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555443
No 32
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=34.71 E-value=63 Score=22.50 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
..|+++|..|.++=+.||+.+..+.++|-++-.
T Consensus 9 ~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 9 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999887764
No 33
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=34.66 E-value=62 Score=18.85 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIEN 35 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~ 35 (133)
.|..+..+|+.++..|+++.+.|-.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3667888899999988888877653
No 34
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=34.31 E-value=59 Score=22.13 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQ 36 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~q 36 (133)
|+++|..|..+.+.|+..|..|...
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677777777777777777777764
No 35
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.19 E-value=93 Score=21.72 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=24.4
Q ss_pred cCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 032808 6 QRGNSNPAATLAALVS-KRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 6 q~~~~~lk~eL~~ll~-kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
|++-...-+.|...+. -+..|+++++.|+++|-.+|..
T Consensus 31 QqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 31 QQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKM 69 (96)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566665543 4677888888888888888863
No 36
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=33.28 E-value=6.1 Score=28.93 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCeeecCCcccc
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNIIKGFDgylk 63 (133)
+...+.|......+.+++..+..|+. ...+.|+.+ .|++++|-|..+++
T Consensus 37 E~A~~~L~~~~~m~~~i~ek~~~i~~---~~~~~~yK~--eY~~L~KkYk~~~~ 85 (119)
T 2avr_X 37 DAARQALAQNEQVYNELSQRAQRLQA---EANTRFYKS--QYQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSCTTHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccHHHH--HHHHHHHHHHHHHH
No 37
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.09 E-value=97 Score=21.10 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
.+..+++++-.+..+++.++..|.+.|-.+|..
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777666654
No 38
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.47 E-value=46 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 16 LAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 16 L~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
++.|......|+.++..|..++..++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555554444444
No 39
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.33 E-value=91 Score=19.30 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 19 LVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 19 ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
|-..-+.|++-++.|-++|..+|.+
T Consensus 22 lerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 22 LERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666666654
No 40
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=32.28 E-value=68 Score=27.90 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCee
Q 032808 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (133)
Q Consensus 15 eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNII 55 (133)
+..+++++-+.|.++|..||.++.++|...-+.-...+|++
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~ 157 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQT 157 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44567777778888888888888888877766544555654
No 41
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=31.55 E-value=51 Score=24.24 Aligned_cols=34 Identities=18% Similarity=0.049 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~Y 44 (133)
.|...|..+-..-..++..|..+|.++-.+|..+
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLETAS 37 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4566666666666677778888888888888764
No 42
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.18 E-value=40 Score=20.91 Aligned_cols=25 Identities=4% Similarity=0.375 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 13 AATLAALVSKRSRFQDELRNIENQV 37 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qI 37 (133)
..++..+......|.+++..++.+|
T Consensus 33 ~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 33 RKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455666666666666666665543
No 43
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.97 E-value=62 Score=27.57 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCee
Q 032808 18 ALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (133)
Q Consensus 18 ~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNII 55 (133)
+++++-+.|.+++..||.++..+|...-+--...+|++
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45556666666777777777777666654333444444
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.73 E-value=75 Score=23.04 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 14 ATLAALVSKRSRFQDELRNIENQVYEL 40 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qIYd~ 40 (133)
.+|-.+...-..|+.++..++++||++
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~l 94 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDL 94 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555554
No 45
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.70 E-value=90 Score=20.70 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=23.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYE 39 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd 39 (133)
.++-.+|+++..+-..|++.+..+|.+|-+
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456677888888888888888888887754
No 46
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=30.36 E-value=81 Score=18.23 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032808 12 PAATLAALVSKRSRFQDELRNIE 34 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE 34 (133)
|..+..+++.++..|+++.+.|-
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 56667777777777777776654
No 47
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.63 E-value=1e+02 Score=21.07 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 15 TLAALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 15 eL~~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
+-.+|.+-|+.|+++|..-.++|-++|-
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~ 65 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQK 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666554
No 48
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=29.30 E-value=85 Score=18.24 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIE 34 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE 34 (133)
.|..+..+|+.++..|+++.+.|-
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 366777888888888888877764
No 49
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.22 E-value=84 Score=18.48 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQV 37 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qI 37 (133)
.|..+..+|+.++..|+++.+.|-.-+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 467788888888888888888776543
No 50
>2lr4_A SPBC2 prophage-derived uncharacterized protein YO; FAB fragment, structural genomics, unknown function; NMR {Bacillus subtilis}
Probab=35.35 E-value=12 Score=27.67 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=12.5
Q ss_pred CCCeeecCCccccCC
Q 032808 51 FGNAFKGFEGFLSSG 65 (133)
Q Consensus 51 ~GNIIKGFDgylks~ 65 (133)
-||||-|||.|-+-+
T Consensus 83 ~~~VI~Gy~ky~sIP 97 (128)
T 2lr4_A 83 QNKVVIGWDKYFEIP 97 (128)
Confidence 489999999998753
No 51
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=28.70 E-value=74 Score=19.15 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 14 ATLAALVSKRSRFQDELRNIENQV 37 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qI 37 (133)
..+.+|..+-..|+..|..|+..|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 52
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.46 E-value=1.3e+02 Score=19.90 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~ 40 (133)
+...+..+-.+...+++++..++.++|.+
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666654
No 53
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.43 E-value=72 Score=27.81 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCee
Q 032808 18 ALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (133)
Q Consensus 18 ~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNII 55 (133)
+++++-+.|.+++..||.++.++|...-+--...+||+
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34455555666666666666666665544333334443
No 54
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.63 E-value=1.4e+02 Score=20.12 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
.+..+++++-.+..+++.++..|.+.|-.+|..
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777666654
No 55
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=27.12 E-value=4.3 Score=27.00 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCCeeecCCccccCCCCccccccccCCCCCCCccccccchhhHhhhhhhhhcccccc
Q 032808 28 DELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSKLKNLELGVMMEDSIMALVGLRVETCLLTDRVNQRGEE 107 (133)
Q Consensus 28 ~~L~~LE~qIYd~Et~YLeeT~~~GNIIKGFDgylks~~~s~~~krkr~~~~d~DRIFSlSS~t~~~~L~~~~~~~~~e~ 107 (133)
++|..|=.++++.+..-+.+.+.+.++ -|||...--.--..-.++-...+.+ +-+|...++.....+...++..+.|-
T Consensus 5 e~l~~I~~e~l~~d~~~i~~~~~~~d~-lg~DSL~~veli~~ie~~fgi~i~~-~~l~~~~TV~dl~~~I~~kl~~k~E~ 82 (87)
T 2kjs_A 5 DALTPIFRQVFDDDSIVLTRETSANDI-DAWDSLSHMNLIVSLEVHYKIKFAL-GELQKLKNVGDLADLVDKKLARKLEH 82 (87)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTCCSTTC-SCCCHHHHHHHHHHHHHHHTCCCCH-HHHTTCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccccCCCCCcccC-CCCChHHHHHHHHHHHHHhCceecH-HHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 356666677788887777765556555 3888765431101111222234544 45899999999999888888887776
Q ss_pred cccc
Q 032808 108 WHRH 111 (133)
Q Consensus 108 ~~~~ 111 (133)
-+.|
T Consensus 83 ~~~~ 86 (87)
T 2kjs_A 83 HHHH 86 (87)
T ss_dssp SSCC
T ss_pred cccc
Confidence 6554
No 56
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.01 E-value=65 Score=28.05 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCee
Q 032808 20 VSK-RSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (133)
Q Consensus 20 l~k-Kk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNII 55 (133)
+++ .+.|.+++..||.++..+|...-+--...+|++
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~ 145 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNIL 145 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 666 778888888888888888877755433444444
No 57
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.11 E-value=83 Score=17.16 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELR 31 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~ 31 (133)
++-++|.++..+-++|.+.|.
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456778887777777766654
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.57 E-value=1.1e+02 Score=24.98 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
|.++..+.++|-++||.++..|+.+|-+.+..
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777888888777777654
No 59
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.36 E-value=1.5e+02 Score=19.66 Aligned_cols=29 Identities=7% Similarity=0.114 Sum_probs=16.4
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 032808 14 ATLAALVSKRS----RFQDELRNIENQVYELET 42 (133)
Q Consensus 14 ~eL~~ll~kKk----~Le~~L~~LE~qIYd~Et 42 (133)
.+|++++.+|. +.|..++.+|++|-.+|.
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~ 54 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555543 355566666666665554
No 60
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.29 E-value=97 Score=26.11 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
.+++.+++++..+-+++..++..++++++..|..
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 46 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELETCKEQLFQSNME 46 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999998876
No 61
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.75 E-value=1e+02 Score=20.54 Aligned_cols=30 Identities=7% Similarity=0.261 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
++.+|..+...+..+..++..+++.+..++
T Consensus 15 ~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 15 IEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555555555443
No 62
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.60 E-value=1.1e+02 Score=17.75 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIEN 35 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~ 35 (133)
.|..+..+|+.++..|+++.+.|-.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3667788899999999988877643
No 63
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=24.44 E-value=1.6e+02 Score=19.58 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLee 47 (133)
.+|++++..+...+..|+-++.++...+-++=..|=++
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E 40 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 40 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999988887777554
No 64
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=23.87 E-value=1.6e+02 Score=22.80 Aligned_cols=39 Identities=10% Similarity=0.314 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhh
Q 032808 8 GNSNPAATLAALVSKRSRFQDELRNIE----NQVYELETSYLQ 46 (133)
Q Consensus 8 ~~~~lk~eL~~ll~kKk~Le~~L~~LE----~qIYd~Et~YLe 46 (133)
+..+.-.+++..+..=+.++.++..|+ ++|+++|-.|..
T Consensus 20 ~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~ 62 (225)
T 2e50_A 20 ADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNK 62 (225)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777766 567889988865
No 65
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.77 E-value=90 Score=21.83 Aligned_cols=29 Identities=7% Similarity=0.090 Sum_probs=18.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVY 38 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIY 38 (133)
+.+.++++....+-+.|.+.+..||.++-
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666677766654
No 66
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.42 E-value=97 Score=20.38 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 032808 24 SRFQDELRNIENQVYELETSY 44 (133)
Q Consensus 24 k~Le~~L~~LE~qIYd~Et~Y 44 (133)
..|+..+..||.+|-.++..-
T Consensus 25 e~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666555543
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.71 E-value=75 Score=22.32 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=18.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQV 37 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qI 37 (133)
..++.++..|-..+..|.++.+.||-+|
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666665
No 68
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=22.63 E-value=18 Score=29.44 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032808 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (133)
Q Consensus 9 ~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLe 46 (133)
|+.+-+.-.+-+++-+.|++.|++||+|=-++++.|=.
T Consensus 23 ye~ai~~~qen~~k~e~L~~rl~kLE~qq~~lt~KY~~ 60 (267)
T 3tkl_B 23 YEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKT 60 (267)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455567788899999999999999999999854
No 69
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.33 E-value=1.3e+02 Score=21.20 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032808 18 ALVSKRSRFQDELRNIENQVYELETSY 44 (133)
Q Consensus 18 ~ll~kKk~Le~~L~~LE~qIYd~Et~Y 44 (133)
+|..+=++|.+.+..||.+=||+|..-
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv 72 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKF 72 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 455566788889999999999998764
No 70
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=22.16 E-value=1.2e+02 Score=17.44 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIE 34 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE 34 (133)
.|..+..+|+.++..|+++...|-
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467778888888888888877664
No 71
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.12 E-value=66 Score=24.88 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 7 RGNSNPAATLAALVSKRSRFQDELRNIENQV 37 (133)
Q Consensus 7 ~~~~~lk~eL~~ll~kKk~Le~~L~~LE~qI 37 (133)
+++..+.+++..+-.+...+++++..+..+|
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333
No 72
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=22.06 E-value=1.4e+02 Score=22.27 Aligned_cols=40 Identities=5% Similarity=-0.003 Sum_probs=31.3
Q ss_pred ccCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032808 5 QQRGNSNPAATLA-ALVSKRSRFQDELRNIENQVYELETSY 44 (133)
Q Consensus 5 ~q~~~~~lk~eL~-~ll~kKk~Le~~L~~LE~qIYd~Et~Y 44 (133)
++.-|+..|.+|. ++......+|.+|..||-+.-..+.+.
T Consensus 19 K~iVTe~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~ 59 (150)
T 4dci_A 19 RAVVTPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQV 59 (150)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777887776 677888899999999999887776554
No 73
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=21.91 E-value=1.2e+02 Score=21.72 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032808 18 ALVSKRSRFQDELRNIENQVYELETS 43 (133)
Q Consensus 18 ~ll~kKk~Le~~L~~LE~qIYd~Et~ 43 (133)
+|++++..|+.++..++.+|-.++..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777555544
No 74
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.79 E-value=1.8e+02 Score=20.55 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032808 18 ALVSKRSRFQDELRNIENQVYE 39 (133)
Q Consensus 18 ~ll~kKk~Le~~L~~LE~qIYd 39 (133)
++.++...|+..+..|+..|-.
T Consensus 92 ~l~~~i~~L~~~~~~L~~~i~~ 113 (142)
T 3gp4_A 92 ELKNRIDVMQEALDRLDFKIDN 113 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334443333
No 75
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=21.71 E-value=1e+02 Score=17.49 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 032808 26 FQDELRNIENQVYELE 41 (133)
Q Consensus 26 Le~~L~~LE~qIYd~E 41 (133)
|+++.++-|.+-|.+|
T Consensus 6 lekevaqaeaenyqle 21 (33)
T 1fmh_A 6 LEKEVAQAEAENYQLE 21 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 4444444444444443
No 76
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=21.51 E-value=1.3e+02 Score=17.45 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIEN 35 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~ 35 (133)
.|..+..+|+.++..|+++.+.|-.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4667788899999999888877754
No 77
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=21.38 E-value=1.3e+02 Score=23.23 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
.|...+..+.+++..|+..+..|+..|-.+++
T Consensus 80 ~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~ 111 (249)
T 3qao_A 80 ALDMQRHLLIEKKQRIETMLATLDLTIKNEKG 111 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666777777777788778778777766655
No 78
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=21.21 E-value=1.2e+02 Score=21.35 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032808 19 LVSKRSRFQDELRNIENQVYELETSY 44 (133)
Q Consensus 19 ll~kKk~Le~~L~~LE~qIYd~Et~Y 44 (133)
|..+=++|.+.+..||.+=||+|..-
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv 72 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQI 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455678888888888888888764
No 79
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.13 E-value=1.8e+02 Score=18.92 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYE 39 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd 39 (133)
+..++..+-.+...+++++..++.+||.
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666654
No 80
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.12 E-value=1.3e+02 Score=20.22 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 9 NSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (133)
Q Consensus 9 ~~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd 39 (133)
.+.+-..|+++..+-..|++.+..+|.++-+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4556678888888888888888888887754
No 81
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.00 E-value=1.4e+02 Score=21.13 Aligned_cols=19 Identities=5% Similarity=0.162 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032808 20 VSKRSRFQDELRNIENQVY 38 (133)
Q Consensus 20 l~kKk~Le~~L~~LE~qIY 38 (133)
..++..|+++++.|+..+-
T Consensus 101 ~~~~~~l~~~i~~L~~~~~ 119 (148)
T 3gpv_A 101 KQQEANVLQLIQDTEKNLK 119 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 82
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.45 E-value=1.4e+02 Score=23.61 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQ 36 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~q 36 (133)
++-.++.++..++.+|++++..|+.+
T Consensus 103 ~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 103 PVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455566666666666666666666
No 83
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.38 E-value=2.2e+02 Score=20.20 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~Y 44 (133)
..|.++|..+...+..+...|..||+.=-|+|...
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~ 72 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 34778888888888888888888888766666543
No 84
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.26 E-value=1.4e+02 Score=18.33 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 13 AATLAALVSKRSRFQDELRNIENQVY 38 (133)
Q Consensus 13 k~eL~~ll~kKk~Le~~L~~LE~qIY 38 (133)
..+...|-.....|..++..|+.++.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 85
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.26 E-value=1.6e+02 Score=22.03 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLee 47 (133)
.|..+|.+-..+|...+.....||.++-++=++-|++
T Consensus 62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeE 98 (154)
T 2ocy_A 62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 98 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777888888999999999999999998887
No 86
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.24 E-value=1.7e+02 Score=18.17 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032808 11 NPAATLAALVSKRSRFQDELRNIENQVYELET 42 (133)
Q Consensus 11 ~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~Et 42 (133)
+|..+...|-.....|..++..|+.++..+..
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555443
No 87
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=20.14 E-value=1.6e+02 Score=19.45 Aligned_cols=21 Identities=5% Similarity=0.229 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032808 20 VSKRSRFQDELRNIENQVYEL 40 (133)
Q Consensus 20 l~kKk~Le~~L~~LE~qIYd~ 40 (133)
..++..|+++++.|+..+-.+
T Consensus 81 ~~~~~~l~~~i~~l~~~~~~l 101 (109)
T 1r8d_A 81 QSQKEILMKKKQRMDEMIQTI 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
Done!