Query 032808
Match_columns 133
No_of_seqs 102 out of 168
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 09:46:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032808.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032808hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 45.4 24 0.0018 22.3 5.5 41 15-55 65-105 (110)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 44.0 11 0.00081 24.5 3.7 32 15-46 2-33 (133)
3 d2azeb1 e.63.1.2 (B:201-301) T 34.1 35 0.0026 22.0 5.0 32 10-41 4-35 (101)
4 d1seta1 a.2.7.1 (A:1-110) Sery 32.2 30 0.0022 21.7 4.3 31 10-40 67-97 (110)
5 d1nkpa_ a.38.1.1 (A:) Myc prot 31.9 35 0.0026 20.7 4.5 29 12-40 57-85 (88)
6 d1vh0a_ c.116.1.3 (A:) Hypothe 28.6 2.7 0.0002 28.9 -1.8 18 80-97 120-137 (157)
7 d1o6da_ c.116.1.3 (A:) Hypothe 26.6 7.9 0.00057 26.2 0.5 19 79-97 111-129 (147)
8 d1to0a_ c.116.1.3 (A:) Hypothe 25.6 3.3 0.00024 28.4 -1.7 18 80-97 120-137 (157)
9 d1r8da_ a.6.1.3 (A:) Multidrug 24.8 26 0.0019 21.8 2.8 23 15-37 83-105 (109)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 22.6 84 0.0061 19.5 5.5 29 17-45 68-96 (107)
11 d1fxkc_ a.2.5.1 (C:) Prefoldin 22.6 78 0.0057 20.0 5.1 28 14-41 95-122 (133)
12 d2e50a1 d.305.1.1 (A:1-222) Pr 20.1 1.2E+02 0.0085 21.5 6.1 57 5-61 17-81 (222)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=45.36 E-value=24 Score=22.25 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCee
Q 032808 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (133)
Q Consensus 15 eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLeeT~~~GNII 55 (133)
.-.+++++=+.|.+++..+|.++-..|..+-+--...+||+
T Consensus 65 ~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~ 105 (110)
T d1seta1 65 EKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34456677778888888888888888888877666677875
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.01 E-value=11 Score=24.46 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032808 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (133)
Q Consensus 15 eL~~ll~kKk~Le~~L~~LE~qIYd~Et~YLe 46 (133)
.|.+|......++.+|..|+.+|..++..--+
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e 33 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISE 33 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777766654433
No 3
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.13 E-value=35 Score=22.04 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
..|+++|.+|.++-+.|+.-+..+.++|.++-
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35899999999999999999998888887764
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=32.18 E-value=30 Score=21.74 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 10 SNPAATLAALVSKRSRFQDELRNIENQVYEL 40 (133)
Q Consensus 10 ~~lk~eL~~ll~kKk~Le~~L~~LE~qIYd~ 40 (133)
.++.++.+.+=.+-+.++.++..+|.+++++
T Consensus 67 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 67 EALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888889999998888764
No 5
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.85 E-value=35 Score=20.69 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (133)
Q Consensus 12 lk~eL~~ll~kKk~Le~~L~~LE~qIYd~ 40 (133)
|++++..+...+..|..+...|..+|-.+
T Consensus 57 L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 57 VQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555556666666666655443
No 6
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=28.59 E-value=2.7 Score=28.90 Aligned_cols=18 Identities=0% Similarity=0.130 Sum_probs=15.3
Q ss_pred CCCccccccchhhHhhhh
Q 032808 80 MEDSIMALVGLRVETCLL 97 (133)
Q Consensus 80 d~DRIFSlSS~t~~~~L~ 97 (133)
..|.++|+|..|+|..|.
T Consensus 120 ~a~~~lSls~mT~pH~la 137 (157)
T d1vh0a_ 120 RSNYALSFSKMTFPHQMM 137 (157)
T ss_dssp HCSEEECSCSSCCCHHHH
T ss_pred hcCCEEECccCCchhHHH
Confidence 368999999999998764
No 7
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=26.62 E-value=7.9 Score=26.24 Aligned_cols=19 Identities=5% Similarity=0.135 Sum_probs=16.0
Q ss_pred CCCCccccccchhhHhhhh
Q 032808 79 MMEDSIMALVGLRVETCLL 97 (133)
Q Consensus 79 ~d~DRIFSlSS~t~~~~L~ 97 (133)
...|.++|+|-.|+|+.|.
T Consensus 111 ~~a~~~lSls~mT~pH~l~ 129 (147)
T d1o6da_ 111 AKAHRVFSLSKMTFTHGMT 129 (147)
T ss_dssp GGCSEEEECCSSCCCHHHH
T ss_pred HhcCcEEeCCcCcchHHHH
Confidence 3478899999999998864
No 8
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=25.64 E-value=3.3 Score=28.42 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=15.3
Q ss_pred CCCccccccchhhHhhhh
Q 032808 80 MEDSIMALVGLRVETCLL 97 (133)
Q Consensus 80 d~DRIFSlSS~t~~~~L~ 97 (133)
..|.++|+|..|+|+.|.
T Consensus 120 ~a~~~~Sls~mT~pH~l~ 137 (157)
T d1to0a_ 120 RADEKLSFSKMTFPHQLM 137 (157)
T ss_dssp HCSEEEESCSSCCCHHHH
T ss_pred hcCcEEecccCCchHHHH
Confidence 368999999999998864
No 9
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=24.77 E-value=26 Score=21.81 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032808 15 TLAALVSKRSRFQDELRNIENQV 37 (133)
Q Consensus 15 eL~~ll~kKk~Le~~L~~LE~qI 37 (133)
....+.+++..|++.++.|++.|
T Consensus 83 ~~~~l~~~~~~l~~~~~~l~~~l 105 (109)
T d1r8da_ 83 QKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555554
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.64 E-value=84 Score=19.49 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032808 17 AALVSKRSRFQDELRNIENQVYELETSYL 45 (133)
Q Consensus 17 ~~ll~kKk~Le~~L~~LE~qIYd~Et~YL 45 (133)
.++-.+...|+.++..|++++-.++..|=
T Consensus 68 ~~l~~~~e~l~~~i~~l~~q~~~l~~~l~ 96 (107)
T d1fxka_ 68 EELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777776653
No 11
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.55 E-value=78 Score=19.99 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032808 14 ATLAALVSKRSRFQDELRNIENQVYELE 41 (133)
Q Consensus 14 ~eL~~ll~kKk~Le~~L~~LE~qIYd~E 41 (133)
+.+..+-...+.+.+++..++.+|-.++
T Consensus 95 ~ri~~l~~~~~~l~~~~~~~~~~i~~l~ 122 (133)
T d1fxkc_ 95 SQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544
No 12
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.13 E-value=1.2e+02 Score=21.50 Aligned_cols=57 Identities=9% Similarity=0.212 Sum_probs=33.7
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhccC----CCCCeeecCCcc
Q 032808 5 QQRGNSNPAATLAALVSKRSRFQDELRNIEN----QVYELETSYLQDIG----QFGNAFKGFEGF 61 (133)
Q Consensus 5 ~q~~~~~lk~eL~~ll~kKk~Le~~L~~LE~----qIYd~Et~YLeeT~----~~GNIIKGFDgy 61 (133)
+....+.+..+.+..+..=+.++.++..|+. +++.+|..|..-.. .-.-||+|--+|
T Consensus 17 ~~~~~~~~~~~~~~~i~~L~~iQ~e~~~l~~e~~~e~~~le~k~~~~~~ply~~R~~iI~gIP~F 81 (222)
T d2e50a1 17 HDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNF 81 (222)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTH
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccH
Confidence 3344566666666666666667777776665 46888888875321 234466666555
Done!