BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032810
MEAASIFSPSIATPISNTPSVNRTTKYCKSKVEFACCNRRRCCYNLIGNRRWAAPSAASN
DVSSVAGPVTAEVTWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDY
FKCPECGMSYGLI

High Scoring Gene Products

Symbol, full name Information P value
AT5G55570 protein from Arabidopsis thaliana 1.6e-24

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032810
        (133 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2162087 - symbol:AT5G55570 species:3702 "Arabi...   280  1.6e-24   1


>TAIR|locus:2162087 [details] [associations]
            symbol:AT5G55570 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] EMBL:CP002688
            IPI:IPI00532551 RefSeq:NP_200368.2 UniGene:At.27411
            UniGene:At.29434 PRIDE:F4K4X2 EnsemblPlants:AT5G55570.1
            GeneID:835651 KEGG:ath:AT5G55570 OMA:CRVPSLW Uniprot:F4K4X2
        Length = 143

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 66/133 (49%), Positives = 82/133 (61%)

Query:     1 MEAASIFS-PSIATPISNTPSVNRTTKYCKSKVEFACCNRRRCCYN-----LIGNRRWAA 54
             MEA+S+   PS+ T + + P      +  KS   F    RRR          + NRR   
Sbjct:     4 MEASSLCRVPSLWT-VRSRP------RQIKSTAGFVSPGRRRSRGGGGGMMTMSNRRLKT 56

Query:    55 PSAASNDVSSVAGPVTAEVTWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLV 114
              SA S    +VA    +E+TWQIIVG IAG+ PFVVAG+EFSKRIIAQ+RCE CGG+GLV
Sbjct:    57 TSALSELADTVAETGKSEITWQIIVGTIAGIIPFVVAGVEFSKRIIAQKRCEECGGTGLV 116

Query:   115 LREKDYFKCPECG 127
              R+K YF+CPECG
Sbjct:   117 SRDKKYFRCPECG 129


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      133       133   0.00091  102 3  11 22  0.37    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  142 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.37u 0.10s 13.47t   Elapsed:  00:00:01
  Total cpu time:  13.37u 0.10s 13.47t   Elapsed:  00:00:01
  Start:  Fri May 10 04:40:14 2013   End:  Fri May 10 04:40:15 2013

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