Query 032810
Match_columns 133
No_of_seqs 23 out of 25
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 09:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lcz_A YCZA, inhibitor of trap 95.0 0.0093 3.2E-07 38.1 1.7 23 102-128 9-31 (53)
2 2bx9_A Anti-trap, AT, tryptoph 94.6 0.014 4.7E-07 37.3 1.7 24 102-129 9-32 (53)
3 1exk_A DNAJ protein; extended 93.1 0.054 1.9E-06 34.5 2.4 11 104-114 30-40 (79)
4 2ctt_A DNAJ homolog subfamily 91.7 0.095 3.2E-06 35.4 2.3 25 100-128 65-89 (104)
5 1exk_A DNAJ protein; extended 91.6 0.067 2.3E-06 34.0 1.4 22 103-128 51-72 (79)
6 2ctt_A DNAJ homolog subfamily 91.4 0.047 1.6E-06 37.0 0.5 26 103-128 46-75 (104)
7 1nlt_A Protein YDJ1, mitochond 86.7 0.27 9.3E-06 38.1 1.9 11 104-114 56-66 (248)
8 1nlt_A Protein YDJ1, mitochond 85.9 0.5 1.7E-05 36.6 3.0 28 99-128 35-62 (248)
9 2kdx_A HYPA, hydrogenase/ureas 85.5 0.35 1.2E-05 33.6 1.8 53 76-130 32-100 (119)
10 3a43_A HYPD, hydrogenase nicke 84.0 0.41 1.4E-05 34.6 1.6 32 98-129 66-116 (139)
11 3j20_Y 30S ribosomal protein S 83.2 0.99 3.4E-05 28.2 2.9 26 101-127 18-44 (50)
12 1pft_A TFIIB, PFTFIIBN; N-term 82.9 0.67 2.3E-05 27.8 2.0 29 103-131 6-35 (50)
13 1dl6_A Transcription factor II 82.7 0.65 2.2E-05 29.5 2.0 32 98-129 7-39 (58)
14 2r6f_A Excinuclease ABC subuni 78.9 1 3.5E-05 42.2 2.7 26 104-129 755-785 (972)
15 1gh9_A 8.3 kDa protein (gene M 76.8 1.1 3.8E-05 30.1 1.7 25 103-129 5-29 (71)
16 2js4_A UPF0434 protein BB2007; 76.4 1 3.6E-05 29.9 1.5 35 96-131 2-37 (70)
17 3lcz_A YCZA, inhibitor of trap 75.2 0.73 2.5E-05 29.2 0.4 17 102-118 23-39 (53)
18 1lko_A Rubrerythrin all-iron(I 74.6 1.7 5.7E-05 32.5 2.4 26 100-128 153-179 (191)
19 2k2d_A Ring finger and CHY zin 74.5 2.2 7.5E-05 28.8 2.7 30 100-129 35-64 (79)
20 2hf1_A Tetraacyldisaccharide-1 73.2 1.7 5.8E-05 28.7 1.9 35 96-131 2-37 (68)
21 2ygr_A Uvrabc system protein A 72.3 1.9 6.7E-05 40.4 2.7 26 104-129 773-803 (993)
22 2pk7_A Uncharacterized protein 71.9 1 3.4E-05 29.9 0.5 35 96-131 2-37 (69)
23 2vf7_A UVRA2, excinuclease ABC 70.7 2.2 7.7E-05 38.8 2.7 26 104-129 640-670 (842)
24 2apo_B Ribosome biogenesis pro 69.0 2 6.7E-05 28.4 1.4 22 103-130 7-28 (60)
25 2jr6_A UPF0434 protein NMA0874 68.9 1.8 6.1E-05 28.6 1.2 35 96-131 2-37 (68)
26 1yuz_A Nigerythrin; rubrythrin 68.0 2.3 7.9E-05 32.3 1.9 25 101-128 170-194 (202)
27 1v54_F VI, cytochrome C oxidas 67.7 4.4 0.00015 28.5 3.2 41 86-130 45-89 (98)
28 3ga8_A HTH-type transcriptiona 67.6 2.6 9E-05 27.2 1.8 26 103-128 3-44 (78)
29 3agx_A DNAJ homolog subfamily 66.6 3.3 0.00011 30.5 2.4 22 97-118 22-43 (181)
30 1m2k_A Silent information regu 65.5 4.2 0.00014 31.2 2.9 28 101-130 120-152 (249)
31 2jny_A Uncharacterized BCR; st 63.8 2.2 7.6E-05 28.2 0.9 36 95-131 3-39 (67)
32 1nui_A DNA primase/helicase; z 63.6 4.2 0.00014 30.4 2.5 26 101-127 13-40 (255)
33 2eou_A Zinc finger protein 473 63.3 2.8 9.5E-05 22.2 1.1 22 110-131 2-23 (44)
34 3m7n_A Putative uncharacterize 63.2 3.2 0.00011 30.6 1.8 35 89-128 130-164 (179)
35 1vd4_A Transcription initiatio 62.8 3.5 0.00012 24.0 1.6 29 103-131 15-50 (62)
36 2epu_A Zinc finger protein 32; 62.6 2.2 7.6E-05 22.7 0.6 21 110-130 2-22 (45)
37 1qyp_A RNA polymerase II; tran 62.5 4.3 0.00015 24.9 2.0 27 102-128 15-51 (57)
38 2k4x_A 30S ribosomal protein S 62.0 3.9 0.00013 25.9 1.8 32 96-127 12-43 (55)
39 2ep0_A Zinc finger protein 28 61.3 2.3 7.8E-05 22.6 0.5 21 110-130 2-22 (46)
40 2elp_A Zinc finger protein 406 60.7 2.6 9E-05 21.3 0.7 16 115-130 4-19 (37)
41 2y69_F Cytochrome C oxidase su 59.4 8 0.00027 28.7 3.3 41 86-130 76-120 (129)
42 3h0g_L DNA-directed RNA polyme 57.7 3.9 0.00013 27.1 1.3 26 103-129 22-47 (63)
43 2kpi_A Uncharacterized protein 57.5 4 0.00014 25.9 1.3 35 95-131 3-39 (56)
44 2gmg_A Hypothetical protein PF 56.5 4.7 0.00016 29.2 1.6 28 100-128 65-92 (105)
45 2elr_A Zinc finger protein 406 56.3 4.1 0.00014 20.2 0.9 17 115-131 4-20 (36)
46 2gai_A DNA topoisomerase I; zi 55.4 3.8 0.00013 36.0 1.2 12 105-116 575-586 (633)
47 2elt_A Zinc finger protein 406 55.1 3.5 0.00012 20.4 0.6 16 116-131 5-20 (36)
48 2eom_A ZFP-95, zinc finger pro 54.9 4.8 0.00016 21.5 1.1 21 111-131 3-23 (46)
49 2aus_D NOP10, ribosome biogene 54.6 5.2 0.00018 26.4 1.5 22 103-130 6-27 (60)
50 1lpl_A Hypothetical 25.4 kDa p 53.9 5.7 0.0002 27.5 1.7 49 73-131 29-78 (95)
51 1p7a_A BF3, BKLF, kruppel-like 52.9 5.6 0.00019 19.9 1.1 14 117-130 8-21 (37)
52 1yc5_A NAD-dependent deacetyla 52.8 5.6 0.00019 30.4 1.6 28 101-130 120-155 (246)
53 2m0e_A Zinc finger and BTB dom 52.4 5.3 0.00018 18.3 0.9 12 120-131 2-13 (29)
54 1ma3_A SIR2-AF2, transcription 52.4 8.5 0.00029 29.6 2.6 28 101-130 122-158 (253)
55 2elm_A Zinc finger protein 406 52.0 6.1 0.00021 20.2 1.2 14 117-130 6-19 (37)
56 2bl6_A Nucleocapsid protein P1 51.6 4.7 0.00016 22.8 0.8 25 104-128 2-27 (37)
57 4b6d_A RAC GTPase-activating p 51.0 7.7 0.00026 24.6 1.8 29 97-127 14-42 (61)
58 1wfl_A Zinc finger protein 216 50.7 4.6 0.00016 27.8 0.7 23 102-130 25-48 (74)
59 2em8_A Zinc finger protein 224 50.7 5.6 0.00019 21.1 1.0 13 116-128 8-20 (46)
60 1vq8_Z 50S ribosomal protein L 50.0 8.5 0.00029 26.2 2.0 26 102-128 27-53 (83)
61 3k7a_M Transcription initiatio 49.5 5.2 0.00018 32.0 1.0 36 95-130 14-52 (345)
62 2enh_A Zinc finger protein 28 47.5 7.7 0.00026 20.6 1.2 18 113-130 5-22 (46)
63 1rik_A E6APC1 peptide; E6-bind 47.0 6.5 0.00022 18.3 0.8 11 120-130 2-12 (29)
64 1vk6_A NADH pyrophosphatase; 1 46.4 7.7 0.00026 30.1 1.5 27 102-128 107-133 (269)
65 2vf7_A UVRA2, excinuclease ABC 45.9 11 0.00039 34.3 2.7 15 102-116 148-162 (842)
66 2kvh_A Zinc finger and BTB dom 45.8 7.4 0.00025 18.1 0.9 12 119-130 2-13 (27)
67 1h7b_A Anaerobic ribonucleotid 45.1 4.8 0.00016 35.6 0.2 26 103-128 541-566 (605)
68 1x4v_A Hypothetical protein LO 44.9 6.4 0.00022 25.9 0.7 28 98-130 8-37 (63)
69 1whg_A Tubulin specific chaper 44.8 12 0.00041 26.8 2.2 49 73-131 50-99 (113)
70 2elx_A Zinc finger protein 406 44.6 7.8 0.00027 18.9 0.9 14 117-130 4-17 (35)
71 2odx_A Cytochrome C oxidase po 44.1 7.4 0.00025 26.5 1.0 38 86-130 21-66 (80)
72 3na7_A HP0958; flagellar bioge 44.0 7.5 0.00025 29.8 1.1 17 116-132 218-234 (256)
73 1whj_A 1700024K14RIK, riken cD 43.8 15 0.0005 26.0 2.5 48 74-131 39-87 (102)
74 2elq_A Zinc finger protein 406 43.7 8.3 0.00028 19.2 0.9 14 117-130 6-19 (36)
75 1ixd_A Cylindromatosis tumour- 43.3 12 0.00041 26.5 2.0 47 75-131 35-83 (104)
76 2eon_A ZFP-95, zinc finger pro 43.1 7.1 0.00024 20.8 0.6 16 115-130 7-22 (46)
77 1srk_A Zinc finger protein ZFP 42.9 8.8 0.0003 18.8 0.9 14 117-130 4-17 (35)
78 2gmg_A Hypothetical protein PF 42.6 6.1 0.00021 28.6 0.4 23 91-113 73-95 (105)
79 2z0w_A CAP-Gly domain-containi 42.5 11 0.00038 26.2 1.7 46 76-131 27-73 (96)
80 4bbr_M Transcription initiatio 41.7 11 0.00039 30.3 1.9 35 94-128 13-50 (345)
81 1ltl_A DNA replication initiat 41.5 21 0.00071 27.6 3.2 27 102-128 134-164 (279)
82 3h7h_A Transcription elongatio 41.4 3.3 0.00011 30.5 -1.2 27 102-131 16-44 (120)
83 2e3i_A Restin; CAP-Gly, cytopl 41.2 15 0.00053 25.0 2.2 47 75-131 18-65 (86)
84 2ytt_A Zinc finger protein 473 41.1 7.8 0.00027 20.5 0.6 17 114-130 6-22 (46)
85 2els_A Zinc finger protein 406 41.0 10 0.00034 18.8 1.0 15 117-131 6-20 (36)
86 2m0d_A Zinc finger and BTB dom 41.0 9.9 0.00034 17.4 0.9 12 119-130 2-13 (30)
87 1txq_A Dynactin 1; protein com 40.8 13 0.00043 25.7 1.7 46 76-131 30-76 (93)
88 3ts2_A Protein LIN-28 homolog 40.8 8.6 0.00029 27.9 0.9 27 102-128 97-127 (148)
89 2m0f_A Zinc finger and BTB dom 40.8 9.5 0.00032 17.4 0.8 11 120-130 2-12 (29)
90 3pwf_A Rubrerythrin; non heme 40.4 12 0.00042 27.6 1.7 25 101-128 137-161 (170)
91 2lvu_A Zinc finger and BTB dom 46.2 6 0.00021 18.3 0.0 11 120-130 2-12 (26)
92 1paa_A Yeast transcription fac 39.7 11 0.00037 17.5 0.9 11 120-130 2-12 (30)
93 1whh_A Clipr-59; microtubule b 39.6 16 0.00055 25.8 2.2 48 74-131 40-88 (102)
94 3pmq_A Decaheme cytochrome C M 39.4 3.3 0.00011 37.4 -1.8 39 91-129 180-220 (669)
95 2kvg_A Zinc finger and BTB dom 39.4 7.6 0.00026 18.3 0.3 12 119-130 2-13 (27)
96 2coy_A Dynactin-1; microtubule 39.4 13 0.00046 26.6 1.8 46 76-131 51-97 (112)
97 2cp0_A Clipr-59 protein, clipr 39.2 15 0.0005 25.6 1.9 45 77-131 34-79 (95)
98 2el6_A Zinc finger protein 268 38.9 9.6 0.00033 20.1 0.7 12 117-128 9-20 (46)
99 2cp6_A Restin; microtubule bin 38.8 17 0.00057 28.2 2.3 48 74-131 53-101 (172)
100 2elv_A Zinc finger protein 406 38.8 9.4 0.00032 18.9 0.6 14 117-130 6-19 (36)
101 2nn6_I 3'-5' exoribonuclease C 38.7 14 0.00049 28.0 1.9 24 103-128 170-193 (209)
102 2cp2_A CLIP-115, KIAA0291; mic 38.6 19 0.00066 25.0 2.4 45 77-131 36-81 (95)
103 3h0g_I DNA-directed RNA polyme 38.5 16 0.00055 25.3 2.0 27 102-128 72-108 (113)
104 2elo_A Zinc finger protein 406 38.5 7.7 0.00026 19.3 0.3 14 117-130 6-19 (37)
105 1ard_A Yeast transcription fac 38.3 12 0.00042 17.1 1.0 11 120-130 2-12 (29)
106 2ept_A Zinc finger protein 32; 38.1 9.5 0.00032 19.6 0.6 15 116-130 6-20 (41)
107 3k1f_M Transcription initiatio 38.0 13 0.00043 29.8 1.6 36 94-129 13-51 (197)
108 1znf_A 31ST zinc finger from X 37.9 12 0.00043 17.0 1.0 10 121-130 2-11 (27)
109 2e3h_A Restin; CAP-Gly, cytopl 37.6 19 0.00065 24.8 2.2 45 77-131 19-64 (90)
110 1a1t_A Nucleocapsid protein; s 37.0 12 0.0004 22.5 1.0 26 103-128 13-41 (55)
111 1k81_A EIF-2-beta, probable tr 36.5 14 0.00047 21.6 1.2 10 119-128 20-29 (36)
112 2epp_A POZ-, at HOOK-, and zin 36.4 12 0.00042 23.5 1.0 18 114-131 7-24 (66)
113 2epz_A Zinc finger protein 28 36.1 14 0.00049 19.3 1.2 13 117-129 9-21 (46)
114 2kvf_A Zinc finger and BTB dom 36.0 11 0.00039 17.3 0.7 11 120-130 3-13 (28)
115 2elz_A Zinc finger protein 224 36.0 14 0.00048 19.5 1.1 13 117-129 9-21 (46)
116 3u31_A SIR2A, transcriptional 35.9 20 0.00069 28.6 2.5 26 102-130 154-191 (290)
117 1klr_A Zinc finger Y-chromosom 35.7 11 0.00039 17.2 0.6 11 120-130 2-12 (30)
118 1wys_A Riken cDNA 2310008M20 p 35.6 12 0.00042 25.2 1.0 25 101-130 13-39 (75)
119 2enc_A Zinc finger protein 224 35.5 13 0.00043 19.6 0.9 11 118-128 10-20 (46)
120 1wg2_A Zinc finger (AN1-like) 35.5 8.7 0.0003 25.7 0.2 28 97-130 10-38 (64)
121 2ytm_A Zinc finger protein 28 35.4 11 0.00038 20.0 0.6 13 117-129 9-21 (46)
122 1twf_L ABC10-alpha, DNA-direct 35.3 12 0.0004 24.9 0.8 25 103-128 29-53 (70)
123 1fv5_A First zinc finger of U- 35.2 8.9 0.0003 21.5 0.2 15 117-131 5-19 (36)
124 1njq_A Superman protein; zinc- 35.1 13 0.00046 18.8 0.9 13 118-130 4-16 (39)
125 2ftc_P Mitochondrial ribosomal 35.0 36 0.0012 21.3 3.0 32 96-127 5-43 (52)
126 2epc_A Zinc finger protein 32; 34.8 14 0.00049 18.8 1.0 15 116-130 7-21 (42)
127 2epq_A POZ-, at HOOK-, and zin 34.3 14 0.00047 19.4 0.9 11 117-127 35-45 (45)
128 3glr_A NAD-dependent deacetyla 34.0 18 0.00062 29.0 1.9 28 101-130 138-173 (285)
129 2en9_A Zinc finger protein 28 33.7 17 0.00057 19.2 1.2 15 116-130 8-22 (46)
130 1yk4_A Rubredoxin, RD; electro 33.7 19 0.00064 22.5 1.6 9 120-128 35-43 (52)
131 2kfq_A FP1; protein, de novo p 33.5 12 0.00041 18.5 0.5 11 120-130 2-12 (32)
132 2a51_A Nucleocapsid protein; s 33.5 14 0.00049 20.9 0.9 25 104-128 2-29 (39)
133 2en2_A B-cell lymphoma 6 prote 33.5 15 0.00051 18.8 0.9 15 116-130 7-21 (42)
134 2riq_A Poly [ADP-ribose] polym 33.4 20 0.00069 27.1 2.0 25 101-130 77-101 (160)
135 2el5_A Zinc finger protein 268 33.3 15 0.00051 18.8 0.9 14 117-130 7-20 (42)
136 3pih_A Uvrabc system protein A 33.3 23 0.00079 32.6 2.7 28 102-129 713-745 (916)
137 2fiy_A Protein FDHE homolog; F 33.3 17 0.0006 29.5 1.7 27 101-127 181-215 (309)
138 1wfh_A Zinc finger (AN1-like) 33.1 11 0.00038 25.2 0.4 24 101-130 14-38 (64)
139 2ec7_A GAG polyprotein (PR55GA 33.1 14 0.00049 22.0 0.9 26 103-128 7-35 (49)
140 2ely_A Zinc finger protein 224 33.0 19 0.00064 18.9 1.3 14 117-130 9-22 (46)
141 3nyb_B Protein AIR2; polya RNA 33.0 16 0.00055 24.6 1.2 25 104-128 26-54 (83)
142 2lcq_A Putative toxin VAPC6; P 32.7 18 0.0006 25.7 1.5 28 100-130 130-158 (165)
143 2yte_A Zinc finger protein 473 32.6 15 0.00052 18.7 0.9 14 117-130 7-20 (42)
144 2emb_A Zinc finger protein 473 32.4 15 0.00051 19.1 0.8 15 117-131 9-23 (44)
145 2dj7_A Actin-binding LIM prote 32.4 24 0.00081 22.2 1.9 34 97-130 10-52 (80)
146 2kn9_A Rubredoxin; metalloprot 32.4 18 0.00063 24.8 1.5 24 102-128 27-68 (81)
147 2epv_A Zinc finger protein 268 32.4 15 0.00053 19.2 0.9 15 116-130 8-22 (44)
148 2yu5_A Zinc finger protein 473 32.1 16 0.00055 18.9 0.9 14 117-130 9-22 (44)
149 2em7_A Zinc finger protein 224 32.0 14 0.00048 19.4 0.7 9 119-127 11-19 (46)
150 2cp5_A Restin; microtubule bin 31.9 24 0.00082 26.4 2.1 46 76-131 81-127 (141)
151 2ytq_A Zinc finger protein 268 31.7 16 0.00056 19.2 0.9 13 117-129 9-21 (46)
152 2eq1_A Zinc finger protein 347 31.6 20 0.00068 18.7 1.3 15 117-131 9-23 (46)
153 2eow_A Zinc finger protein 347 31.6 17 0.00059 18.9 1.0 14 117-130 9-22 (46)
154 2ytb_A Zinc finger protein 32; 31.6 21 0.00071 18.1 1.3 14 117-130 8-21 (42)
155 1tfi_A Transcriptional elongat 31.5 22 0.00075 21.9 1.6 28 101-128 8-45 (50)
156 2eos_A B-cell lymphoma 6 prote 31.5 21 0.00073 18.2 1.4 15 117-131 8-22 (42)
157 3p8b_A DNA-directed RNA polyme 31.4 25 0.00086 24.4 2.0 22 102-129 23-44 (81)
158 1ryq_A DNA-directed RNA polyme 31.2 22 0.00075 23.9 1.7 22 102-129 11-32 (69)
159 1twf_I B12.6, DNA-directed RNA 31.2 23 0.00078 24.9 1.8 27 102-128 72-108 (122)
160 2yts_A Zinc finger protein 484 30.4 18 0.0006 18.9 0.9 15 116-130 8-22 (46)
161 2eoh_A Zinc finger protein 28 30.4 16 0.00054 19.3 0.7 15 116-130 8-22 (46)
162 2eof_A Zinc finger protein 268 30.3 18 0.00062 18.6 0.9 14 117-130 9-22 (44)
163 1x61_A Thyroid receptor intera 30.3 34 0.0011 20.4 2.3 28 103-130 6-43 (72)
164 2cp3_A CLIP-115, KIAA0291; mic 30.3 30 0.001 23.4 2.3 45 77-131 25-70 (84)
165 3lpe_B DNA-directed RNA polyme 30.3 28 0.00096 22.5 2.0 20 103-128 2-21 (59)
166 2drp_A Protein (tramtrack DNA- 30.1 23 0.00079 19.8 1.4 10 119-128 39-48 (66)
167 2jrp_A Putative cytoplasmic pr 30.1 25 0.00084 24.3 1.8 7 122-128 33-39 (81)
168 2lvt_A Zinc finger and BTB dom 36.3 11 0.00037 17.6 0.0 11 120-130 2-12 (29)
169 2enf_A Zinc finger protein 347 30.0 17 0.00059 19.0 0.8 15 116-130 8-22 (46)
170 2epr_A POZ-, at HOOK-, and zin 29.8 15 0.00052 19.7 0.6 11 118-128 38-48 (48)
171 3iuf_A Zinc finger protein UBI 29.8 16 0.00055 20.0 0.7 14 117-130 4-17 (48)
172 2ytf_A Zinc finger protein 268 29.6 18 0.00063 18.8 0.9 14 117-130 9-22 (46)
173 3po3_S Transcription elongatio 29.6 19 0.00063 27.1 1.2 29 100-128 135-173 (178)
174 2lvr_A Zinc finger and BTB dom 35.7 11 0.00039 17.4 0.0 12 120-131 3-14 (30)
175 2yrj_A Zinc finger protein 473 29.5 19 0.00066 18.7 1.0 15 116-130 8-22 (46)
176 2yto_A Zinc finger protein 484 29.5 19 0.00066 18.9 1.0 14 117-130 9-22 (46)
177 2en3_A ZFP-95, zinc finger pro 29.4 19 0.00064 18.8 0.9 14 117-130 9-22 (46)
178 2xzm_6 RPS27E; ribosome, trans 29.3 15 0.00052 25.6 0.6 16 113-128 22-40 (81)
179 2eq2_A Zinc finger protein 347 29.1 21 0.00073 18.6 1.1 15 117-131 9-23 (46)
180 2coz_A CAP350, centrosome-asso 29.1 30 0.001 25.2 2.2 46 76-131 48-94 (122)
181 2cow_A Kinesin-like protein KI 29.0 30 0.001 24.4 2.1 44 78-131 42-86 (100)
182 2ytp_A Zinc finger protein 484 29.0 20 0.00067 18.9 0.9 14 117-130 9-22 (46)
183 2en7_A Zinc finger protein 268 28.9 21 0.00072 18.3 1.0 15 117-131 9-23 (44)
184 2jne_A Hypothetical protein YF 28.8 17 0.00056 26.5 0.8 26 101-128 31-56 (101)
185 2eoj_A Zinc finger protein 268 28.6 15 0.00051 19.0 0.4 15 116-130 8-22 (44)
186 2emi_A Zinc finger protein 484 28.5 20 0.00069 18.7 0.9 14 117-130 9-22 (46)
187 2em6_A Zinc finger protein 224 28.5 24 0.00081 18.5 1.2 14 117-130 9-22 (46)
188 1yui_A GAGA-factor; complex (D 28.4 21 0.00072 19.6 1.0 14 117-130 21-34 (54)
189 2emf_A Zinc finger protein 484 28.3 21 0.00073 18.7 1.0 15 116-130 8-22 (46)
190 2ep3_A Zinc finger protein 484 28.2 20 0.00069 18.7 0.9 14 117-130 9-22 (46)
191 2eox_A Zinc finger protein 473 28.2 17 0.0006 18.8 0.6 15 116-130 8-22 (44)
192 1whk_A 1700024K14RIK, riken cD 28.2 34 0.0012 23.5 2.3 44 78-131 32-76 (91)
193 2yrm_A B-cell lymphoma 6 prote 28.2 25 0.00084 18.3 1.2 15 117-131 7-21 (43)
194 2emz_A ZFP-95, zinc finger pro 28.0 23 0.00079 18.6 1.1 16 116-131 8-23 (46)
195 2emj_A Zinc finger protein 28 28.0 21 0.00071 18.8 0.9 14 117-130 9-22 (46)
196 2eq0_A Zinc finger protein 347 27.9 22 0.00074 18.6 1.0 14 117-130 9-22 (46)
197 2em4_A Zinc finger protein 28 27.9 20 0.00068 18.8 0.8 15 116-130 8-22 (46)
198 2yqq_A Zinc finger HIT domain- 27.8 25 0.00085 22.6 1.4 20 102-128 12-31 (56)
199 2k5c_A Uncharacterized protein 27.8 18 0.00061 26.1 0.8 10 119-128 50-59 (95)
200 1s24_A Rubredoxin 2; electron 27.5 26 0.00091 24.3 1.6 25 101-128 34-76 (87)
201 2eoy_A Zinc finger protein 473 27.5 22 0.00075 18.7 1.0 16 116-131 8-23 (46)
202 2v3b_B Rubredoxin 2, rubredoxi 27.4 26 0.00089 22.0 1.4 8 121-128 37-44 (55)
203 2ihx_A Nucleocapsid (NC) prote 27.4 18 0.00061 22.4 0.6 26 103-128 5-38 (61)
204 2en6_A Zinc finger protein 268 27.2 19 0.00065 18.8 0.7 11 118-128 10-20 (46)
205 2eoz_A Zinc finger protein 473 27.2 18 0.00061 19.0 0.6 14 117-130 9-22 (46)
206 2emx_A Zinc finger protein 268 27.2 22 0.00077 18.3 1.0 14 117-130 7-20 (44)
207 2em3_A Zinc finger protein 28 27.2 22 0.00074 18.6 0.9 14 117-130 9-22 (46)
208 2ene_A Zinc finger protein 347 27.2 21 0.00072 18.6 0.9 14 117-130 9-22 (46)
209 2emg_A Zinc finger protein 484 27.2 25 0.00086 18.3 1.2 15 116-130 8-22 (46)
210 2yth_A Zinc finger protein 224 27.0 26 0.00089 18.3 1.2 15 117-131 9-23 (46)
211 2akl_A PHNA-like protein PA012 27.0 22 0.00074 27.1 1.2 27 102-129 27-53 (138)
212 1dx8_A Rubredoxin; electron tr 27.0 25 0.00084 23.2 1.3 8 121-128 41-48 (70)
213 2ema_A Zinc finger protein 347 26.9 23 0.00079 18.5 1.0 14 117-130 9-22 (46)
214 2eoq_A Zinc finger protein 224 26.9 25 0.00087 18.3 1.1 14 117-130 9-22 (46)
215 2yso_A ZFP-95, zinc finger pro 26.8 23 0.00079 18.5 1.0 14 117-130 9-22 (46)
216 1rim_A E6APC2 peptide; E6-bind 26.7 22 0.00077 17.6 0.9 11 120-130 2-12 (33)
217 2eor_A Zinc finger protein 224 26.7 23 0.00078 18.4 0.9 14 117-130 9-22 (46)
218 2ysp_A Zinc finger protein 224 26.6 19 0.00064 18.8 0.6 9 119-127 11-19 (46)
219 2i5o_A DNA polymerase ETA; zin 26.6 24 0.00081 21.2 1.1 14 118-131 7-20 (39)
220 2em9_A Zinc finger protein 224 26.5 22 0.00077 18.4 0.9 15 116-130 8-22 (46)
221 1wfe_A Riken cDNA 2310008M20 p 26.5 26 0.0009 23.9 1.4 25 101-130 24-50 (86)
222 2emk_A Zinc finger protein 28 26.4 26 0.00089 18.3 1.2 14 117-130 9-22 (46)
223 2yu8_A Zinc finger protein 347 26.4 22 0.00076 18.5 0.8 15 116-130 8-22 (46)
224 2em0_A Zinc finger protein 224 26.4 27 0.00092 18.2 1.2 14 117-130 9-22 (46)
225 3irb_A Uncharacterized protein 26.3 31 0.0011 24.7 1.8 27 98-129 44-70 (145)
226 2eme_A Zinc finger protein 473 26.3 23 0.00078 18.4 0.9 14 117-130 9-22 (46)
227 2ep1_A Zinc finger protein 484 26.3 25 0.00085 18.2 1.0 14 117-130 9-22 (46)
228 2eop_A Zinc finger protein 268 26.1 27 0.00092 18.1 1.2 14 117-130 9-22 (46)
229 2epw_A Zinc finger protein 268 25.9 23 0.00079 18.4 0.9 14 117-130 9-22 (46)
230 2el4_A Zinc finger protein 268 25.9 23 0.0008 18.4 0.9 14 117-130 9-22 (46)
231 4b6m_A Tubulin-specific chaper 25.9 50 0.0017 22.6 2.7 51 72-131 19-70 (84)
232 1dxg_A Desulforedoxin; non-hem 25.8 24 0.00082 20.2 1.0 12 118-129 4-15 (36)
233 2em2_A Zinc finger protein 28 25.7 24 0.00081 18.5 0.9 15 116-130 8-22 (46)
234 2eq4_A Zinc finger protein 224 25.6 22 0.00076 18.4 0.8 14 117-130 9-22 (46)
235 2eml_A Zinc finger protein 28 25.6 24 0.00082 18.4 0.9 14 117-130 9-22 (46)
236 2en8_A Zinc finger protein 224 25.6 23 0.0008 18.4 0.8 14 117-130 9-22 (46)
237 2ytg_A ZFP-95, zinc finger pro 25.5 25 0.00084 18.4 0.9 15 116-130 8-22 (46)
238 2ytn_A Zinc finger protein 347 25.5 27 0.00093 18.2 1.1 14 117-130 9-22 (46)
239 2eoo_A ZFP-95, zinc finger pro 25.4 25 0.00085 18.4 0.9 14 117-130 9-22 (46)
240 1wfp_A Zinc finger (AN1-like) 25.4 18 0.00062 24.8 0.4 24 101-130 24-48 (74)
241 2yti_A Zinc finger protein 347 25.4 23 0.00079 18.5 0.8 14 117-130 9-22 (46)
242 2ep2_A Zinc finger protein 484 25.3 24 0.00084 18.4 0.9 14 117-130 9-22 (46)
243 1q1a_A HST2 protein; ternary c 25.3 21 0.00073 27.8 0.9 11 120-130 163-173 (289)
244 2eov_A Zinc finger protein 484 25.2 28 0.00097 18.0 1.1 14 117-130 9-22 (46)
245 2ytk_A Zinc finger protein 347 25.1 25 0.00084 18.3 0.9 14 117-130 9-22 (46)
246 2emy_A Zinc finger protein 268 25.1 26 0.00088 18.3 1.0 14 117-130 9-22 (46)
247 2epx_A Zinc finger protein 28 24.9 31 0.001 17.9 1.2 16 116-131 8-23 (47)
248 2eq3_A Zinc finger protein 347 24.7 18 0.00062 18.8 0.3 14 117-130 9-22 (46)
249 3rdv_A CAP-Gly domain-containi 24.3 37 0.0013 22.3 1.8 48 74-131 17-65 (72)
250 1s5p_A NAD-dependent deacetyla 24.3 38 0.0013 25.6 2.1 28 101-130 112-144 (235)
251 2avu_E Flagellar transcription 24.2 45 0.0016 26.0 2.5 30 98-127 130-161 (192)
252 2emh_A Zinc finger protein 484 24.1 26 0.0009 18.2 0.9 14 117-130 9-22 (46)
253 2eps_A POZ-, at HOOK-, and zin 24.0 29 0.00098 19.1 1.1 14 117-130 38-51 (54)
254 2ytj_A Zinc finger protein 484 24.0 26 0.0009 18.2 0.9 14 117-130 9-22 (46)
255 2em5_A ZFP-95, zinc finger pro 23.6 28 0.00095 18.2 0.9 14 117-130 9-22 (46)
256 2emm_A ZFP-95, zinc finger pro 23.4 28 0.00095 18.0 0.9 14 117-130 9-22 (46)
257 2cqf_A RNA-binding protein LIN 23.1 22 0.00075 22.2 0.5 26 103-128 8-37 (63)
258 2emp_A Zinc finger protein 347 23.1 28 0.00095 18.1 0.8 14 117-130 9-22 (46)
259 2ytd_A Zinc finger protein 473 23.1 29 0.00098 18.1 0.9 14 117-130 9-22 (46)
260 3uk3_C Zinc finger protein 217 23.0 30 0.001 18.6 1.0 14 117-130 29-42 (57)
261 2ytr_A Zinc finger protein 347 23.0 28 0.00095 18.0 0.8 14 117-130 9-22 (46)
262 1pqv_S STP-alpha, transcriptio 22.9 39 0.0013 27.1 2.0 27 102-128 268-304 (309)
263 2li8_A Protein LIN-28 homolog 22.6 25 0.00085 23.0 0.7 26 103-128 25-54 (74)
264 2ent_A Krueppel-like factor 15 22.6 28 0.00097 18.1 0.8 13 116-128 8-22 (48)
265 2en1_A Zinc finger protein 224 21.9 26 0.00089 18.3 0.6 14 117-130 9-22 (46)
266 1q14_A HST2 protein; histone d 21.8 27 0.00092 28.8 0.9 11 120-130 171-181 (361)
267 3j21_g 50S ribosomal protein L 21.6 31 0.0011 21.9 0.9 28 97-128 9-36 (51)
268 2e2z_A TIM15; protein import, 21.4 42 0.0015 24.1 1.7 31 98-128 9-46 (100)
269 4gzn_C ZFP-57, zinc finger pro 21.1 33 0.0011 20.6 1.0 14 117-130 29-42 (60)
270 1x6e_A Zinc finger protein 24; 21.0 23 0.00078 20.4 0.2 28 103-130 15-52 (72)
271 2e9h_A EIF-5, eukaryotic trans 20.8 55 0.0019 24.7 2.3 28 103-130 104-136 (157)
272 2eoe_A Zinc finger protein 347 20.8 24 0.00083 18.3 0.3 14 117-130 9-22 (46)
273 2jr7_A DPH3 homolog; DESR1, CS 20.7 31 0.0011 24.1 0.9 12 118-130 21-32 (89)
274 3v2d_6 50S ribosomal protein L 20.7 74 0.0025 20.1 2.6 32 96-127 4-44 (54)
275 2kwq_A Protein MCM10 homolog; 20.5 53 0.0018 23.0 2.1 25 104-130 50-75 (92)
276 1bbo_A Human enhancer-binding 20.4 37 0.0013 18.2 1.0 14 117-130 26-39 (57)
277 3gj5_B Nuclear pore complex pr 20.4 42 0.0014 19.6 1.3 22 103-128 8-29 (34)
278 1wge_A Hypothetical protein 26 20.4 38 0.0013 23.2 1.3 12 118-130 28-39 (83)
No 1
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=95.02 E-value=0.0093 Score=38.06 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=19.2
Q ss_pred eeeccccccceeEeecCeeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
|..|+.|+|+|-+.. .+|+.|+|
T Consensus 9 ~~~C~~C~GsG~~i~----~~C~~C~G 31 (53)
T 3lcz_A 9 ETTCPNCNGSGREEP----EPCPKCLG 31 (53)
T ss_dssp EEECTTTTTSCEETT----EECTTTTT
T ss_pred eccCcCCcccccCCC----CcCCCCCC
Confidence 678999999998764 67999987
No 2
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=94.59 E-value=0.014 Score=37.26 Aligned_cols=24 Identities=25% Similarity=0.654 Sum_probs=19.5
Q ss_pred eeeccccccceeEeecCeeecCCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
+..|+.|+|+|-+.. ..|+.|+|-
T Consensus 9 ~~~C~~C~GsG~~~~----~~C~~C~G~ 32 (53)
T 2bx9_A 9 EVACPKCERAGEIEG----TPCPACSGK 32 (53)
T ss_dssp EEECTTTTTSSEETT----EECTTTTTS
T ss_pred cccCCCCcceeccCC----CCCccCCCC
Confidence 568999999998853 579999883
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=93.05 E-value=0.054 Score=34.46 Aligned_cols=11 Identities=55% Similarity=1.153 Sum_probs=5.1
Q ss_pred eccccccceeE
Q 032810 104 RCEVCGGSGLV 114 (133)
Q Consensus 104 rCe~C~GsGLV 114 (133)
.|+.|+|+|.+
T Consensus 30 ~C~~C~G~G~~ 40 (79)
T 1exk_A 30 TCPTCHGSGQV 40 (79)
T ss_dssp ECTTTTTSSEE
T ss_pred CCCCCcCeEEE
Confidence 44444444444
No 4
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.66 E-value=0.095 Score=35.41 Aligned_cols=25 Identities=28% Similarity=0.764 Sum_probs=20.0
Q ss_pred eeeeeccccccceeEeecCeeecCCCCCC
Q 032810 100 IAQRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 100 i~Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
..|..|..|+|+|-+.+ .+|+.|+|
T Consensus 65 ~~~~~C~~C~G~G~~i~----~~C~~C~G 89 (104)
T 2ctt_A 65 VMRSTCRRCGGRGSIII----SPCVVCRG 89 (104)
T ss_dssp EEEEECSSSSSSSEECS----SCCSSSSS
T ss_pred EEEEECCcCCCcceECC----CcCCCCCC
Confidence 35778999999998774 46999987
No 5
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=91.61 E-value=0.067 Score=34.01 Aligned_cols=22 Identities=27% Similarity=0.804 Sum_probs=12.1
Q ss_pred eeccccccceeEeecCeeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
..|+.|+|+|.+.+ .+|+.|.|
T Consensus 51 ~~C~~C~G~G~~~~----~~C~~C~G 72 (79)
T 1exk_A 51 QTCPHCQGRGTLIK----DPCNKCHG 72 (79)
T ss_dssp EECTTTTTSSEECS----SBCGGGTT
T ss_pred eECcCCCCccEECC----CcCCCCCC
Confidence 45666666665542 24666654
No 6
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.39 E-value=0.047 Score=36.96 Aligned_cols=26 Identities=35% Similarity=0.804 Sum_probs=15.3
Q ss_pred eeccccccceeEeecC----eeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREK----DYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~----~~~kC~~CGG 128 (133)
+.|..|+|+|.|.+.. ....|+.|+|
T Consensus 46 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G 75 (104)
T 2ctt_A 46 QHCHYCGGSGMETINTGPFVMRSTCRRCGG 75 (104)
T ss_dssp EECSSSSSSCEEEEEETTEEEEEECSSSSS
T ss_pred ccCCCCCCCEEEEEEeCCEEEEEECCcCCC
Confidence 4577777777654321 2346777776
No 7
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=86.70 E-value=0.27 Score=38.07 Aligned_cols=11 Identities=36% Similarity=1.195 Sum_probs=5.0
Q ss_pred eccccccceeE
Q 032810 104 RCEVCGGSGLV 114 (133)
Q Consensus 104 rCe~C~GsGLV 114 (133)
.|..|+|+|.+
T Consensus 56 ~C~~C~G~G~~ 66 (248)
T 1nlt_A 56 KCTSCNGQGIK 66 (248)
T ss_dssp CCTTSSSSSCE
T ss_pred cCCCCCCCcEE
Confidence 44444444443
No 8
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=85.86 E-value=0.5 Score=36.57 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=20.8
Q ss_pred eeeeeeccccccceeEeecCeeecCCCCCC
Q 032810 99 IIAQRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 99 Ii~Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
|-....|+.|.|+|--. .....|+.|+|
T Consensus 35 ~~r~~~C~~C~G~G~~~--g~~~~C~~C~G 62 (248)
T 1nlt_A 35 LNKQILCKECEGRGGKK--GAVKKCTSCNG 62 (248)
T ss_dssp EEEEEECTTTTTCSBST--TTCCCCTTSSS
T ss_pred eeEEEeCCCCcCccCCC--CCCccCCCCCC
Confidence 33456899999999643 33588999987
No 9
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=85.53 E-value=0.35 Score=33.57 Aligned_cols=53 Identities=9% Similarity=0.121 Sum_probs=33.8
Q ss_pred EEEEeeeeccceeE--------Eeee-eec------eeeeeeeeccccccceeEeecCeee-cCCCCCCCc
Q 032810 76 QIIVGAIAGVTPFV--------VAGI-EFS------KRIIAQRRCEVCGGSGLVLREKDYF-KCPECGMSY 130 (133)
Q Consensus 76 qi~vG~iAGv~PFv--------vAg~-EF~------KRIi~Q~rCe~C~GsGLV~r~~~~~-kC~~CGGFl 130 (133)
.+.||.++||-|=. -.|- -|- +.+-.+-+|..|+-.--+ +..+. +||.||+..
T Consensus 32 ~l~IG~ls~v~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~~CG~~~e~--~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 32 VVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVELECKDCSHVFKP--NALDYGVCEKCHSKN 100 (119)
T ss_dssp EEEEETTSCCCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECSSSSCEECS--CCSTTCCCSSSSSCC
T ss_pred EEEeehhccccHHHHHHHHHHHHhCChhhcCcEEEEEeccceEEcCCCCCEEeC--CCCCCCcCccccCCC
Confidence 35677777777621 1222 222 455568899999765322 56677 999999863
No 10
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=84.04 E-value=0.41 Score=34.64 Aligned_cols=32 Identities=25% Similarity=0.603 Sum_probs=22.1
Q ss_pred eeeeeeeccccccceeEee---------cCe----------eecCCCCCCC
Q 032810 98 RIIAQRRCEVCGGSGLVLR---------EKD----------YFKCPECGMS 129 (133)
Q Consensus 98 RIi~Q~rCe~C~GsGLV~r---------~~~----------~~kC~~CGGF 129 (133)
.+-.+-+|..||-..-+.. +.. +.+||.||+.
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred ecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 4456779999987654322 114 7999999986
No 11
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.21 E-value=0.99 Score=28.23 Aligned_cols=26 Identities=31% Similarity=0.959 Sum_probs=19.6
Q ss_pred eeeeccccccceeEeec-CeeecCCCCC
Q 032810 101 AQRRCEVCGGSGLVLRE-KDYFKCPECG 127 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~-~~~~kC~~CG 127 (133)
..+-|+.|| +|+++.. ..-.+|+.||
T Consensus 18 ~~k~CP~CG-~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 18 KNKFCPRCG-PGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SSEECSSSC-SSCEEEECSSEEECSSSC
T ss_pred ecccCCCCC-CceEEecCCCeEECCCCC
Confidence 457899995 4666654 5678999998
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=82.93 E-value=0.67 Score=27.80 Aligned_cols=29 Identities=21% Similarity=0.659 Sum_probs=22.7
Q ss_pred eeccccccceeEeec-CeeecCCCCCCCcc
Q 032810 103 RRCEVCGGSGLVLRE-KDYFKCPECGMSYG 131 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~-~~~~kC~~CGGFl~ 131 (133)
..|+.|++.-|+... .....|+.||=-++
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCccc
Confidence 479999987788754 46799999996554
No 13
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=82.66 E-value=0.65 Score=29.50 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=24.0
Q ss_pred eeeeeeeccccccceeEee-cCeeecCCCCCCC
Q 032810 98 RIIAQRRCEVCGGSGLVLR-EKDYFKCPECGMS 129 (133)
Q Consensus 98 RIi~Q~rCe~C~GsGLV~r-~~~~~kC~~CGGF 129 (133)
+.+...+|..|++.-||.- +.....|..||=-
T Consensus 7 ~ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 7 DALPRVTCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CCCSCCSBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred hccccccCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 3455568999999778874 3457899999843
No 14
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=78.87 E-value=1 Score=42.17 Aligned_cols=26 Identities=38% Similarity=0.889 Sum_probs=22.2
Q ss_pred eccccccceeEeec-----CeeecCCCCCCC
Q 032810 104 RCEVCGGSGLVLRE-----KDYFKCPECGMS 129 (133)
Q Consensus 104 rCe~C~GsGLV~r~-----~~~~kC~~CGGF 129 (133)
|||.|+|.|++.-+ ..|..|+.|.|.
T Consensus 755 rC~~C~g~G~i~~em~fl~~v~~~ce~c~G~ 785 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHFLPDVYVPCEVCHGK 785 (972)
T ss_dssp BCTTTTTCSEEEECCSSSCCEEEECTTTTTC
T ss_pred cccccccccceeeehhccccccccccccccc
Confidence 89999999999755 347899999985
No 15
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=76.82 E-value=1.1 Score=30.12 Aligned_cols=25 Identities=32% Similarity=0.689 Sum_probs=21.2
Q ss_pred eeccccccceeEeecCeeecCCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
-+|. |+--=++..+..-.+|| ||--
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~-CG~~ 29 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCV-CGRT 29 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEET-TTEE
T ss_pred EECC-CCCEEEEcCCCcEEECC-CCCe
Confidence 4899 99988888888899999 9953
No 16
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=76.37 E-value=1 Score=29.90 Aligned_cols=35 Identities=23% Similarity=0.542 Sum_probs=26.8
Q ss_pred ceeeeeeeeccccccceeEe-ecCeeecCCCCCCCcc
Q 032810 96 SKRIIAQRRCEVCGGSGLVL-REKDYFKCPECGMSYG 131 (133)
Q Consensus 96 ~KRIi~Q~rCe~C~GsGLV~-r~~~~~kC~~CGGFl~ 131 (133)
-++++.-..|++|+|. |.. .+.....|++||--+|
T Consensus 2 d~~LL~iL~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 2 ESRLLDILVCPVCKGR-LEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCCCCCCCBCTTTCCB-EEEETTTTEEEETTTTEEEE
T ss_pred ChHHhhheECCCCCCc-CEEeCCCCEEEcCCCCceec
Confidence 3567777899999995 554 4456788999997766
No 17
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=75.17 E-value=0.73 Score=29.16 Aligned_cols=17 Identities=29% Similarity=0.769 Sum_probs=14.5
Q ss_pred eeeccccccceeEeecC
Q 032810 102 QRRCEVCGGSGLVLREK 118 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~ 118 (133)
...|..|.|+|+|.+.+
T Consensus 23 ~~~C~~C~G~G~v~~~~ 39 (53)
T 3lcz_A 23 PEPCPKCLGKGVILTAQ 39 (53)
T ss_dssp TEECTTTTTSSEEECHH
T ss_pred CCcCCCCCCcEEEEEEe
Confidence 48999999999998654
No 18
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=74.59 E-value=1.7 Score=32.47 Aligned_cols=26 Identities=31% Similarity=0.675 Sum_probs=18.6
Q ss_pred eeeeeccccccceeEeec-CeeecCCCCCC
Q 032810 100 IAQRRCEVCGGSGLVLRE-KDYFKCPECGM 128 (133)
Q Consensus 100 i~Q~rCe~C~GsGLV~r~-~~~~kC~~CGG 128 (133)
...-+|.+|| -+..+ .-+-+||.||.
T Consensus 153 ~~~~~C~~CG---~~~~g~~~p~~CP~C~~ 179 (191)
T 1lko_A 153 ATKWRCRNCG---YVHEGTGAPELCPACAH 179 (191)
T ss_dssp EEEEEETTTC---CEEEEEECCSBCTTTCC
T ss_pred CceEEECCCC---CEeeCCCCCCCCCCCcC
Confidence 4467899995 55555 34569999996
No 19
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=74.51 E-value=2.2 Score=28.79 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.5
Q ss_pred eeeeeccccccceeEeecCeeecCCCCCCC
Q 032810 100 IAQRRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 100 i~Q~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
-++-.|..|+..+-|...-.+-||+.||.+
T Consensus 35 ~v~I~CnDC~~~s~v~~h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 35 TVDILCNDCNGRSTVQFHILGMKCKICESY 64 (79)
T ss_dssp EEEEEESSSCCEEEEECCTTCCCCTTTSCC
T ss_pred EeEEECCCCCCCccCCceeecccCcCCCCc
Confidence 345689999999999888888899999975
No 20
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=73.17 E-value=1.7 Score=28.71 Aligned_cols=35 Identities=23% Similarity=0.585 Sum_probs=26.9
Q ss_pred ceeeeeeeeccccccceeEe-ecCeeecCCCCCCCcc
Q 032810 96 SKRIIAQRRCEVCGGSGLVL-REKDYFKCPECGMSYG 131 (133)
Q Consensus 96 ~KRIi~Q~rCe~C~GsGLV~-r~~~~~kC~~CGGFl~ 131 (133)
-++++.-..|++|+|. |.. .++....|++||--+|
T Consensus 2 d~~LL~iL~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 2 DAKFLEILVCPLCKGP-LVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp CCCCEEECBCTTTCCB-CEEETTTTEEEETTTTEEEE
T ss_pred ChHHhhheECCCCCCc-CeEeCCCCEEEcCCCCcEec
Confidence 3567778899999985 655 4467788999997766
No 21
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=72.31 E-value=1.9 Score=40.37 Aligned_cols=26 Identities=38% Similarity=0.859 Sum_probs=22.1
Q ss_pred eccccccceeEeec-----CeeecCCCCCCC
Q 032810 104 RCEVCGGSGLVLRE-----KDYFKCPECGMS 129 (133)
Q Consensus 104 rCe~C~GsGLV~r~-----~~~~kC~~CGGF 129 (133)
|||.|+|.|++.-+ .-+..|+.|.|.
T Consensus 773 rC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~ 803 (993)
T 2ygr_A 773 RCEACTGDGTIKIEMNFLPDVYVPCEVCQGA 803 (993)
T ss_dssp BCTTTTSSSEEEECCTTSCCEEEECTTTTTC
T ss_pred cccccccccceeehhhccccceeeehhcccc
Confidence 89999999999755 357899999883
No 22
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=71.90 E-value=1 Score=29.92 Aligned_cols=35 Identities=23% Similarity=0.573 Sum_probs=26.2
Q ss_pred ceeeeeeeeccccccceeEe-ecCeeecCCCCCCCcc
Q 032810 96 SKRIIAQRRCEVCGGSGLVL-REKDYFKCPECGMSYG 131 (133)
Q Consensus 96 ~KRIi~Q~rCe~C~GsGLV~-r~~~~~kC~~CGGFl~ 131 (133)
-++++.-..|++|+|. |.. .++....|++||--+|
T Consensus 2 d~~LLeiL~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 2 DTKLLDILACPICKGP-LKLSADKTELISKGAGLAYP 37 (69)
T ss_dssp -CCGGGTCCCTTTCCC-CEECTTSSEEEETTTTEEEE
T ss_pred ChHHHhheeCCCCCCc-CeEeCCCCEEEcCCCCcEec
Confidence 3566777899999985 554 4567788999997766
No 23
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=70.72 E-value=2.2 Score=38.84 Aligned_cols=26 Identities=46% Similarity=0.976 Sum_probs=22.0
Q ss_pred eccccccceeEeec-----CeeecCCCCCCC
Q 032810 104 RCEVCGGSGLVLRE-----KDYFKCPECGMS 129 (133)
Q Consensus 104 rCe~C~GsGLV~r~-----~~~~kC~~CGGF 129 (133)
||+.|+|.|++..+ .-+..|+.|+|.
T Consensus 640 ~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~ 670 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFLPSVYAPCPVCHGT 670 (842)
T ss_dssp BCTTTTTCSEEEETTCSSSCEEEECTTTTTC
T ss_pred ccccccCCCccchhhhcCCccceecccccCc
Confidence 79999999999765 347789999994
No 24
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=68.96 E-value=2 Score=28.37 Aligned_cols=22 Identities=36% Similarity=0.847 Sum_probs=16.9
Q ss_pred eeccccccceeEeecCeeecCCCCCCCc
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGGFl 130 (133)
++|+.|+---| ...||.||+-+
T Consensus 7 r~C~~CgvYTL------k~~CP~CG~~T 28 (60)
T 2apo_B 7 KKCPKCGLYTL------KEICPKCGEKT 28 (60)
T ss_dssp EECTTTCCEES------SSBCSSSCSBC
T ss_pred eeCCCCCCEec------cccCcCCCCcC
Confidence 68999976666 33599999864
No 25
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=68.91 E-value=1.8 Score=28.63 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=26.4
Q ss_pred ceeeeeeeeccccccceeEe-ecCeeecCCCCCCCcc
Q 032810 96 SKRIIAQRRCEVCGGSGLVL-REKDYFKCPECGMSYG 131 (133)
Q Consensus 96 ~KRIi~Q~rCe~C~GsGLV~-r~~~~~kC~~CGGFl~ 131 (133)
-++++.-..|++|+|. |.. .+.....|++||--+|
T Consensus 2 d~~LL~iL~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGR-LEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp CCSSSCCCBCSSSCCB-CEEETTTTEEEETTTTEEEE
T ss_pred ChHHhhheECCCCCCc-CeEeCCCCEEEcCCCCcEec
Confidence 3566777899999985 655 4467788999997766
No 26
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=67.97 E-value=2.3 Score=32.26 Aligned_cols=25 Identities=32% Similarity=0.826 Sum_probs=18.1
Q ss_pred eeeeccccccceeEeecCeeecCCCCCC
Q 032810 101 AQRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
..-+|.+|| -+..+..+.+||.||.
T Consensus 170 ~~~~C~~CG---~i~~g~~p~~CP~C~~ 194 (202)
T 1yuz_A 170 KFHLCPICG---YIHKGEDFEKCPICFR 194 (202)
T ss_dssp CEEECSSSC---CEEESSCCSBCTTTCC
T ss_pred cEEEECCCC---CEEcCcCCCCCCCCCC
Confidence 356788886 4555666789999985
No 27
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=67.71 E-value=4.4 Score=28.54 Aligned_cols=41 Identities=37% Similarity=0.742 Sum_probs=28.0
Q ss_pred ceeEEeeeeeceeeeeeeeccccccceeE----eecCeeecCCCCCCCc
Q 032810 86 TPFVVAGIEFSKRIIAQRRCEVCGGSGLV----LREKDYFKCPECGMSY 130 (133)
Q Consensus 86 ~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV----~r~~~~~kC~~CGGFl 130 (133)
.|.+|-++ |-+||+-=- |+ ..+--| ..++.+.||++||-.+
T Consensus 45 ~P~lVpS~-~~~RiVGC~-~~--~D~h~v~W~~l~~g~~~RC~eCG~~f 89 (98)
T 1v54_F 45 DPNLVPSI-TNKRIVGCI-CE--EDNSTVIWFWLHKGEAQRCPSCGTHY 89 (98)
T ss_dssp SCEEEECS-SSEEEEEEC-CS--TTCSCCEEEEEESSSCEECTTTCCEE
T ss_pred CCeEeecC-CCCeEEeec-CC--CCCceeEEEEEeCCCceECCCCCeEE
Confidence 68899988 799998643 44 333332 2344599999999754
No 28
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=67.61 E-value=2.6 Score=27.16 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=18.2
Q ss_pred eeccccccceeEeecC----------------eeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREK----------------DYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~----------------~~~kC~~CGG 128 (133)
.+|..|++..|+.... ....|+.||-
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE 44 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEE 44 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCC
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCC
Confidence 3799998876765321 3678999984
No 29
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=66.61 E-value=3.3 Score=30.54 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=18.0
Q ss_pred eeeeeeeeccccccceeEeecC
Q 032810 97 KRIIAQRRCEVCGGSGLVLREK 118 (133)
Q Consensus 97 KRIi~Q~rCe~C~GsGLV~r~~ 118 (133)
|+|-+++.|..|.|+|.+...+
T Consensus 22 k~i~i~~~c~~c~G~g~~~~~~ 43 (181)
T 3agx_A 22 KKMKISHKRLNPDGKSIRNEDK 43 (181)
T ss_dssp EEEEEEEEEECTTSSCEEEEEE
T ss_pred EEEEEecccCCCCCceEEEEeE
Confidence 5667889999999999987554
No 30
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=65.55 E-value=4.2 Score=31.19 Aligned_cols=28 Identities=32% Similarity=0.585 Sum_probs=18.5
Q ss_pred eeeeccccccceeEeec-----CeeecCCCCCCCc
Q 032810 101 AQRRCEVCGGSGLVLRE-----KDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~-----~~~~kC~~CGGFl 130 (133)
..-+|..|+-. ...+ ...-+||.|||.|
T Consensus 120 ~~~~C~~C~~~--~~~~~~~~~~~~p~C~~Cgg~l 152 (249)
T 1m2k_A 120 RVVRCTSCNNS--FEVESAPKIPPLPKCDKCGSLL 152 (249)
T ss_dssp EEEEESSSSCE--EECSSCCCSSSCCBCSSSSSBE
T ss_pred ceeEeCCCCCc--ccchhhccCCCCCCCCCCCCCc
Confidence 35679999762 2222 1256999999965
No 31
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=63.81 E-value=2.2 Score=28.20 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=28.1
Q ss_pred eceeeeeeeeccccccceeEee-cCeeecCCCCCCCcc
Q 032810 95 FSKRIIAQRRCEVCGGSGLVLR-EKDYFKCPECGMSYG 131 (133)
Q Consensus 95 F~KRIi~Q~rCe~C~GsGLV~r-~~~~~kC~~CGGFl~ 131 (133)
+-++++.-..|++|+| .|... ++....|++||--+|
T Consensus 3 md~~LLeiL~CP~ck~-~L~~~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 3 LDPQLLEVLACPKDKG-PLRYLESEQLLVNERLNLAYR 39 (67)
T ss_dssp SCGGGTCCCBCTTTCC-BCEEETTTTEEEETTTTEEEE
T ss_pred CCHHHHHHhCCCCCCC-cCeEeCCCCEEEcCCCCcccc
Confidence 5577888889999999 56664 355778999997666
No 32
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=63.62 E-value=4.2 Score=30.44 Aligned_cols=26 Identities=27% Similarity=0.599 Sum_probs=18.6
Q ss_pred eeeeccccccc-ee-EeecCeeecCCCCC
Q 032810 101 AQRRCEVCGGS-GL-VLREKDYFKCPECG 127 (133)
Q Consensus 101 ~Q~rCe~C~Gs-GL-V~r~~~~~kC~~CG 127 (133)
.+.+|+.|+|+ .+ +..+. ..+|..||
T Consensus 13 ~~~~CP~Cg~~d~~~~~~dg-~~~C~~Cg 40 (255)
T 1nui_A 13 YHIPCDNCGSSDGNSLFSDG-HTFCYVCE 40 (255)
T ss_dssp EEECCSSSCCSSCEEEETTS-CEEETTTC
T ss_pred cCCcCCCCCCCCCceEeCCC-CeecccCC
Confidence 47799999995 32 23333 58999998
No 33
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.28 E-value=2.8 Score=22.19 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=14.6
Q ss_pred cceeEeecCeeecCCCCCCCcc
Q 032810 110 GSGLVLREKDYFKCPECGMSYG 131 (133)
Q Consensus 110 GsGLV~r~~~~~kC~~CGGFl~ 131 (133)
|...+-.+..+++|+.||--+.
T Consensus 2 ~h~~~h~~~~~~~C~~C~k~f~ 23 (44)
T 2eou_A 2 SSGSSGAAKTTSECQECGKIFR 23 (44)
T ss_dssp CCSCSCSSSCCCCCTTTCCCCS
T ss_pred CCCCCCCCCcCeECCCCCcccC
Confidence 3344445667888999986654
No 34
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=63.17 E-value=3.2 Score=30.60 Aligned_cols=35 Identities=31% Similarity=0.657 Sum_probs=23.9
Q ss_pred EEeeeeeceeeeeeeeccccccceeEeecCeeecCCCCCC
Q 032810 89 VVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 89 vvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
-+.+-|+|| ..-+|+.|+ .=|+..+ ...+||.||-
T Consensus 130 S~k~~~lGv---v~a~~~~~g-~~m~~~~-~~~~cp~~g~ 164 (179)
T 3m7n_A 130 STKEEEMGV---LRALCSNCK-TEMVREG-DILKCPECGR 164 (179)
T ss_dssp ECCSTTCEE---EECBCTTTC-CBCEECS-SSEECSSSCC
T ss_pred EEecCCCCE---EEecccccC-CceEECC-CEEECCCCCC
Confidence 344555554 344688886 4477777 8899999984
No 35
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=62.76 E-value=3.5 Score=24.04 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=19.1
Q ss_pred eeccccccc-----e--eEeecCeeecCCCCCCCcc
Q 032810 103 RRCEVCGGS-----G--LVLREKDYFKCPECGMSYG 131 (133)
Q Consensus 103 ~rCe~C~Gs-----G--LV~r~~~~~kC~~CGGFl~ 131 (133)
-.|+.|+-+ - .+-.+..+++|+.||.-+.
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 368888642 1 2334567899999997653
No 36
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.58 E-value=2.2 Score=22.68 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=13.3
Q ss_pred cceeEeecCeeecCCCCCCCc
Q 032810 110 GSGLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 110 GsGLV~r~~~~~kC~~CGGFl 130 (133)
+++.+-.+..+++|+.||--+
T Consensus 2 s~~~~h~~~k~~~C~~C~k~F 22 (45)
T 2epu_A 2 SSGSSGTGQKPFECTHCGKSF 22 (45)
T ss_dssp CCCCCCCSCCSEEETTTTEEE
T ss_pred CCCCCCCCCcCccCCCCCCcc
Confidence 344555566778888887543
No 37
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=62.47 E-value=4.3 Score=24.91 Aligned_cols=27 Identities=30% Similarity=0.780 Sum_probs=20.7
Q ss_pred eeeccccccceeEeec-----C-----eeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLRE-----K-----DYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~-----~-----~~~kC~~CGG 128 (133)
...|+.|+..-++... . -+++|..||-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~ 51 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH 51 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCC
Confidence 6789999998887532 1 3689999984
No 38
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=61.95 E-value=3.9 Score=25.88 Aligned_cols=32 Identities=28% Similarity=0.693 Sum_probs=21.3
Q ss_pred ceeeeeeeeccccccceeEeecCeeecCCCCC
Q 032810 96 SKRIIAQRRCEVCGGSGLVLREKDYFKCPECG 127 (133)
Q Consensus 96 ~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~~CG 127 (133)
||=.-..+.|+.||..=++......+.|+.||
T Consensus 12 gki~~~~~fCPkCG~~~~ma~~~dr~~C~kCg 43 (55)
T 2k4x_A 12 GKLVRKHRFCPRCGPGVFLAEHADRYSCGRCG 43 (55)
T ss_dssp CCCCCSSCCCTTTTTTCCCEECSSEEECTTTC
T ss_pred CEEEEccccCcCCCCceeEeccCCEEECCCCC
Confidence 44222368899998644444445688999997
No 39
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.26 E-value=2.3 Score=22.65 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=12.2
Q ss_pred cceeEeecCeeecCCCCCCCc
Q 032810 110 GSGLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 110 GsGLV~r~~~~~kC~~CGGFl 130 (133)
+++.+..+..+++|..||--+
T Consensus 2 s~~~~h~~~~~~~C~~C~k~f 22 (46)
T 2ep0_A 2 SSGSSGTGEKPYKCDVCHKSF 22 (46)
T ss_dssp CCCCSSTTCCSEECSSSCCEE
T ss_pred CCCCCCCCCCCeeCcccCccc
Confidence 344445556667777776543
No 40
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.74 E-value=2.6 Score=21.26 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=11.6
Q ss_pred eecCeeecCCCCCCCc
Q 032810 115 LREKDYFKCPECGMSY 130 (133)
Q Consensus 115 ~r~~~~~kC~~CGGFl 130 (133)
-.+..+++|+.||--+
T Consensus 4 h~~~k~~~C~~C~k~f 19 (37)
T 2elp_A 4 GSSGRAMKCPYCDFYF 19 (37)
T ss_dssp CCCCCCEECSSSSCEE
T ss_pred CCCCCCeECCCCChhh
Confidence 3456688999998654
No 41
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=59.41 E-value=8 Score=28.73 Aligned_cols=41 Identities=37% Similarity=0.742 Sum_probs=27.2
Q ss_pred ceeEEeeeeeceeeeeeeeccccccceeE----eecCeeecCCCCCCCc
Q 032810 86 TPFVVAGIEFSKRIIAQRRCEVCGGSGLV----LREKDYFKCPECGMSY 130 (133)
Q Consensus 86 ~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV----~r~~~~~kC~~CGGFl 130 (133)
-|.+|-++ |-+||+-=- |+ ..+--| ..++.+.+|++||-.+
T Consensus 76 dP~lVpS~-~d~RiVGC~-~~--~Dsh~v~Wf~L~kg~p~RCpeCG~~f 120 (129)
T 2y69_F 76 DPNLVPSI-TNKRIVGCI-CE--EDNSTVIWFWLHKGEAQRCPSCGTHY 120 (129)
T ss_dssp SCEEEEES-SSEEEEEEC-CS--TTCSCCEEEEEESSSCEECTTTCCEE
T ss_pred CCeEeecC-CCCeEEeec-CC--CCCceeEEEEEeCCCceeCCCCCeEE
Confidence 47788887 799998633 44 233332 2344589999999754
No 42
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=57.70 E-value=3.9 Score=27.11 Aligned_cols=26 Identities=31% Similarity=0.846 Sum_probs=17.0
Q ss_pred eeccccccceeEeecCeeecCCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
-+|..|+-.=-+ +.....||++||.-
T Consensus 22 Y~C~~Cg~~~~l-~~~~~iRC~~CG~R 47 (63)
T 3h0g_L 22 YLCADCGARNTI-QAKEVIRCRECGHR 47 (63)
T ss_dssp CBCSSSCCBCCC-CSSSCCCCSSSCCC
T ss_pred EECCCCCCeeec-CCCCceECCCCCcE
Confidence 468888654322 23567899999864
No 43
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=57.45 E-value=4 Score=25.86 Aligned_cols=35 Identities=23% Similarity=0.666 Sum_probs=26.8
Q ss_pred eceeeeeeeeccccccceeEeecCeeecCC--CCCCCcc
Q 032810 95 FSKRIIAQRRCEVCGGSGLVLREKDYFKCP--ECGMSYG 131 (133)
Q Consensus 95 F~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~--~CGGFl~ 131 (133)
+-++++.-.+|.+|+|. |...+ ....|+ +||-.+|
T Consensus 3 ~d~~lL~iL~CP~c~~~-L~~~~-~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 3 LEAGLLEILACPACHAP-LEERD-AELICTGQDCGLAYP 39 (56)
T ss_dssp CCCSCTTSCCCSSSCSC-EEEET-TEEEECSSSCCCEEE
T ss_pred CCHHHHhheeCCCCCCc-ceecC-CEEEcCCcCCCcEEe
Confidence 45667777899999994 76665 556799 9997766
No 44
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=56.53 E-value=4.7 Score=29.18 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=18.3
Q ss_pred eeeeeccccccceeEeecCeeecCCCCCC
Q 032810 100 IAQRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 100 i~Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
+..-+|..||-. ...+-+.+-|||.|+.
T Consensus 65 v~p~~C~~CG~~-F~~~~~kPsrCP~CkS 92 (105)
T 2gmg_A 65 IKPAQCRKCGFV-FKAEINIPSRCPKCKS 92 (105)
T ss_dssp ECCCBBTTTCCB-CCCCSSCCSSCSSSCC
T ss_pred EECcChhhCcCe-ecccCCCCCCCcCCCC
Confidence 445578888766 3223356788888875
No 45
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.25 E-value=4.1 Score=20.20 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=11.9
Q ss_pred eecCeeecCCCCCCCcc
Q 032810 115 LREKDYFKCPECGMSYG 131 (133)
Q Consensus 115 ~r~~~~~kC~~CGGFl~ 131 (133)
-.+..+++|..||--+.
T Consensus 4 h~~~~~~~C~~C~k~f~ 20 (36)
T 2elr_A 4 GSSGKTHLCDMCGKKFK 20 (36)
T ss_dssp CCCCSSCBCTTTCCBCS
T ss_pred CCCCCCeecCcCCCCcC
Confidence 34566789999986543
No 46
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=55.39 E-value=3.8 Score=36.01 Aligned_cols=12 Identities=8% Similarity=-0.119 Sum_probs=7.2
Q ss_pred ccccccceeEee
Q 032810 105 CEVCGGSGLVLR 116 (133)
Q Consensus 105 Ce~C~GsGLV~r 116 (133)
|+.|+...|+.+
T Consensus 575 CP~Cg~g~l~~r 586 (633)
T 2gai_A 575 YLKCECGKTRSV 586 (633)
T ss_dssp EEECSSSCCEEC
T ss_pred CcccCCCcceee
Confidence 777764455554
No 47
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.11 E-value=3.5 Score=20.44 Aligned_cols=16 Identities=25% Similarity=0.766 Sum_probs=11.2
Q ss_pred ecCeeecCCCCCCCcc
Q 032810 116 REKDYFKCPECGMSYG 131 (133)
Q Consensus 116 r~~~~~kC~~CGGFl~ 131 (133)
.+..+++|+.||--+.
T Consensus 5 ~~~k~~~C~~C~k~f~ 20 (36)
T 2elt_A 5 SSGKPYKCPQCSYASA 20 (36)
T ss_dssp CCCCSEECSSSSCEES
T ss_pred CCCCCCCCCCCCcccC
Confidence 3456789999986543
No 48
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.94 E-value=4.8 Score=21.50 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=13.9
Q ss_pred ceeEeecCeeecCCCCCCCcc
Q 032810 111 SGLVLREKDYFKCPECGMSYG 131 (133)
Q Consensus 111 sGLV~r~~~~~kC~~CGGFl~ 131 (133)
++-+-.+..+++|..||--+.
T Consensus 3 ~~~~h~~~k~~~C~~C~k~F~ 23 (46)
T 2eom_A 3 SGSSGHGERGHRCSDCGKFFL 23 (46)
T ss_dssp CCCCCCCCSSCCCSSSCCCCS
T ss_pred CCCCCCCCCCcCCCCCCCeeC
Confidence 344455667888999986543
No 49
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=54.59 E-value=5.2 Score=26.41 Aligned_cols=22 Identities=41% Similarity=0.915 Sum_probs=15.8
Q ss_pred eeccccccceeEeecCeeecCCCCCCCc
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGGFl 130 (133)
++|+.|+---| ...||.||+-.
T Consensus 6 r~C~~Cg~YTL------k~~CP~CG~~t 27 (60)
T 2aus_D 6 RKCPKCGRYTL------KETCPVCGEKT 27 (60)
T ss_dssp EECTTTCCEES------SSBCTTTCSBC
T ss_pred eECCCCCCEEc------cccCcCCCCcc
Confidence 68999965555 23499999854
No 50
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=53.94 E-value=5.7 Score=27.53 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=31.4
Q ss_pred eeeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 73 VTWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 73 ~~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
..--=+||-+.+. |=.|+|+|+-+-. ... .|- ..+++||.| |.+|-|.+
T Consensus 29 ~GtVryvG~~~~~-~G~wvGVElDep~------GKn--DGs-v~G~rYF~C~p~~G~Fvr 78 (95)
T 1lpl_A 29 RGEVAYVGATKFK-EGVWVGVKYDEPV------GKN--DGS-VAGVRYFDCDPKYGGFVR 78 (95)
T ss_dssp EEEEEEEECCSSS-SSCEEEEEESSSC------SSB--SSE-ETTEECSCCCTTSEEEEC
T ss_pred EEEEEEecccCCC-CCEEEEEEccCCC------Ccc--CCE-ECCEEEeEeCCCEEEEEc
Confidence 3444567776654 6789999998642 222 333 347789999 46676654
No 51
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=52.88 E-value=5.6 Score=19.87 Aligned_cols=14 Identities=36% Similarity=0.999 Sum_probs=10.7
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 8 ~~k~~~C~~C~k~f 21 (37)
T 1p7a_A 8 GIKPFQCPDCDRSF 21 (37)
T ss_dssp CSSSBCCTTTCCCB
T ss_pred CCCCccCCCCCccc
Confidence 45678999998654
No 52
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=52.79 E-value=5.6 Score=30.36 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=18.6
Q ss_pred eeeeccccccceeEeec--------CeeecCCCCCCCc
Q 032810 101 AQRRCEVCGGSGLVLRE--------KDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~--------~~~~kC~~CGGFl 130 (133)
..-+|..|+-. ...+ ...-+||.|||.|
T Consensus 120 ~~~~C~~C~~~--~~~~~~~~~~~~~~~p~C~~Cgg~l 155 (246)
T 1yc5_A 120 EEYYCVRCEKK--YTVEDVIKKLESSDVPLCDDCNSLI 155 (246)
T ss_dssp EEEEETTTCCE--EEHHHHHHHTTTCSSCBCTTTCCBE
T ss_pred ceeEcCCCCCC--CcHHHHHHHhccCCCCCCCCCCCcc
Confidence 45679999763 2221 1356999999965
No 53
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=52.40 E-value=5.3 Score=18.30 Aligned_cols=12 Identities=33% Similarity=0.991 Sum_probs=8.6
Q ss_pred eecCCCCCCCcc
Q 032810 120 YFKCPECGMSYG 131 (133)
Q Consensus 120 ~~kC~~CGGFl~ 131 (133)
+++|+.||-.+.
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 2m0e_A 2 EHKCPHCDKKFN 13 (29)
T ss_dssp CCCCSSCCCCCC
T ss_pred CCcCCCCCcccC
Confidence 467888886554
No 54
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=52.36 E-value=8.5 Score=29.57 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=18.2
Q ss_pred eeeeccccccceeEeec--------CeeecCCCCCC-Cc
Q 032810 101 AQRRCEVCGGSGLVLRE--------KDYFKCPECGM-SY 130 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~--------~~~~kC~~CGG-Fl 130 (133)
..-+|..|+-. ...+ ...-+||.||| .|
T Consensus 122 ~~~~C~~C~~~--~~~~~~~~~~~~~~~p~C~~Cgg~~l 158 (253)
T 1ma3_A 122 DKLDCLDCHET--YDWSEFVEDFNKGEIPRCRKCGSYYV 158 (253)
T ss_dssp EEEEETTTCCE--EEGGGTHHHHHTTCCCCCTTTCCSCE
T ss_pred CeeeeCCCCCc--CcHHHHHHHhccCCCCCCCCCCCccc
Confidence 35679999763 2221 23468999999 54
No 55
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.04 E-value=6.1 Score=20.18 Aligned_cols=14 Identities=21% Similarity=0.626 Sum_probs=10.9
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|..||--+
T Consensus 6 ~~k~~~C~~C~k~f 19 (37)
T 2elm_A 6 SGHLYYCSQCHYSS 19 (37)
T ss_dssp SSCEEECSSSSCEE
T ss_pred CCcCeECCCCCccc
Confidence 45689999999654
No 56
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=51.65 E-value=4.7 Score=22.80 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=19.0
Q ss_pred eccccccceeEeec-CeeecCCCCCC
Q 032810 104 RCEVCGGSGLVLRE-KDYFKCPECGM 128 (133)
Q Consensus 104 rCe~C~GsGLV~r~-~~~~kC~~CGG 128 (133)
+|-.|+..|=+.++ ....+|+.||.
T Consensus 2 ~C~~Cg~~GH~~~~C~~~~~C~~Cg~ 27 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAPKVCFKCKQ 27 (37)
T ss_dssp CBSSSCCSSCCTTTSSCBTTCSSCCC
T ss_pred cccccCCCCcchhhCcCcCeEccCCC
Confidence 58888888888776 34578888875
No 57
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=51.01 E-value=7.7 Score=24.64 Aligned_cols=29 Identities=31% Similarity=0.639 Sum_probs=21.7
Q ss_pred eeeeeeeeccccccceeEeecCeeecCCCCC
Q 032810 97 KRIIAQRRCEVCGGSGLVLREKDYFKCPECG 127 (133)
Q Consensus 97 KRIi~Q~rCe~C~GsGLV~r~~~~~kC~~CG 127 (133)
|.++..-.|..|+. ++.-++.-.||-+|+
T Consensus 14 kt~~~~~~C~~Cg~--~i~~gkq~~kC~dC~ 42 (61)
T 4b6d_A 14 KTVIKPESCVPCGK--RIKFGKLSLKCRDCR 42 (61)
T ss_dssp EECCSCEECTTTCC--EECTTCEEEEESSSS
T ss_pred eeccCCcccccccC--EEEEeeEeeECCCCC
Confidence 45566689999943 445677889999997
No 58
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=50.71 E-value=4.6 Score=27.78 Aligned_cols=23 Identities=39% Similarity=0.996 Sum_probs=18.5
Q ss_pred eeeccccccc-eeEeecCeeecCCCCCCCc
Q 032810 102 QRRCEVCGGS-GLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 102 Q~rCe~C~Gs-GLV~r~~~~~kC~~CGGFl 130 (133)
..||..|+-. ||. .|+|. ||+++
T Consensus 25 ~nRC~~CrKkvgL~-----gf~Cr-Cg~~F 48 (74)
T 1wfl_A 25 KNRCFMCRKKVGLT-----GFDCR-CGNLF 48 (74)
T ss_dssp TTBCSSSCCBCGGG-----CEECT-TSCEE
T ss_pred CCcChhhCCccccc-----CeecC-CCCEe
Confidence 3699999886 775 48999 99875
No 59
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.66 E-value=5.6 Score=21.12 Aligned_cols=13 Identities=38% Similarity=0.920 Sum_probs=7.2
Q ss_pred ecCeeecCCCCCC
Q 032810 116 REKDYFKCPECGM 128 (133)
Q Consensus 116 r~~~~~kC~~CGG 128 (133)
.+..+++|+.||-
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2em8_A 8 SGEKPYKCVECGK 20 (46)
T ss_dssp CSCCSEECSSSCC
T ss_pred CCCCCeECcccCc
Confidence 3445566666654
No 60
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=49.97 E-value=8.5 Score=26.24 Aligned_cols=26 Identities=27% Similarity=0.717 Sum_probs=19.2
Q ss_pred eeeccccccceeEeec-CeeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLRE-KDYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~-~~~~kC~~CGG 128 (133)
.-.|+.|++ -++.+. ..-.+|+.||-
T Consensus 27 ~y~Cp~CG~-~~v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 27 DHACPNCGE-DRVDRQGTGIWQCSYCDY 53 (83)
T ss_dssp CEECSSSCC-EEEEEEETTEEEETTTCC
T ss_pred cCcCCCCCC-cceeccCCCeEECCCCCC
Confidence 457999986 456544 46789999985
No 61
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=49.46 E-value=5.2 Score=31.95 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=24.2
Q ss_pred eceeeeeeeeccccccce--eEeec-CeeecCCCCCCCc
Q 032810 95 FSKRIIAQRRCEVCGGSG--LVLRE-KDYFKCPECGMSY 130 (133)
Q Consensus 95 F~KRIi~Q~rCe~C~GsG--LV~r~-~~~~kC~~CGGFl 130 (133)
|+...-....|..|++.. +|... .-..-|.+||=-|
T Consensus 14 ~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 14 RGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp ---CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred cCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 677777778999999873 66532 3466899999654
No 62
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.51 E-value=7.7 Score=20.55 Aligned_cols=18 Identities=11% Similarity=0.383 Sum_probs=11.6
Q ss_pred eEeecCeeecCCCCCCCc
Q 032810 113 LVLREKDYFKCPECGMSY 130 (133)
Q Consensus 113 LV~r~~~~~kC~~CGGFl 130 (133)
.+-.+..+++|+.||--+
T Consensus 5 ~~h~~~k~~~C~~C~k~F 22 (46)
T 2enh_A 5 SSGTGEKPYECDVCRKAF 22 (46)
T ss_dssp CCCCCSSSCBCTTTCCBC
T ss_pred CCcCCCCCcCCCCcCchh
Confidence 344456678888887654
No 63
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=47.04 E-value=6.5 Score=18.25 Aligned_cols=11 Identities=45% Similarity=1.228 Sum_probs=8.3
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
+++|+.||-.+
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 1rik_A 2 KFACPECPKRF 12 (29)
T ss_dssp CEECSSSSCEE
T ss_pred CccCCCCCchh
Confidence 57899998654
No 64
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=46.41 E-value=7.7 Score=30.14 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=20.9
Q ss_pred eeeccccccceeEeecCeeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
.+-|..||..=....+.....|++||-
T Consensus 107 ~~fC~~CG~~~~~~~~~~~~~C~~C~~ 133 (269)
T 1vk6_A 107 HKYCGYCGHEMYPSKTEWAMLCSHCRE 133 (269)
T ss_dssp TSBCTTTCCBEEECSSSSCEEESSSSC
T ss_pred CCccccCCCcCccCCCceeeeCCCCCC
Confidence 488999988754555567889999974
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=45.86 E-value=11 Score=34.29 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=13.2
Q ss_pred eeeccccccceeEee
Q 032810 102 QRRCEVCGGSGLVLR 116 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r 116 (133)
+-+|+.|.|-|.+..
T Consensus 148 ~G~C~~C~G~G~~~~ 162 (842)
T 2vf7_A 148 EGACPECHGLGRVYT 162 (842)
T ss_dssp TTBCTTTTSSSEEEE
T ss_pred CCCCccccCCccEEE
Confidence 579999999998865
No 66
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=45.80 E-value=7.4 Score=18.07 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=8.9
Q ss_pred eeecCCCCCCCc
Q 032810 119 DYFKCPECGMSY 130 (133)
Q Consensus 119 ~~~kC~~CGGFl 130 (133)
.+++|..||--+
T Consensus 2 k~~~C~~C~k~f 13 (27)
T 2kvh_A 2 KPFSCSLCPQRS 13 (27)
T ss_dssp CCEECSSSSCEE
T ss_pred cCccCCCcChhh
Confidence 367899998654
No 67
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=45.05 E-value=4.8 Score=35.58 Aligned_cols=26 Identities=27% Similarity=0.707 Sum_probs=2.2
Q ss_pred eeccccccceeEeecCeeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
-+|..||=.|..........||.||.
T Consensus 541 ~~C~~CGy~~~~~~~~~~~~CP~Cg~ 566 (605)
T 1h7b_A 541 DKCFTCGSTHEMTPTENGFVCSICGE 566 (605)
T ss_dssp EET-----------------------
T ss_pred ccCcccCCcCccCccccCCcCCCCCC
Confidence 47999997765433334578999984
No 68
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.92 E-value=6.4 Score=25.85 Aligned_cols=28 Identities=25% Similarity=0.725 Sum_probs=21.5
Q ss_pred eeeeeeeccc--cccceeEeecCeeecCCCCCCCc
Q 032810 98 RIIAQRRCEV--CGGSGLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 98 RIi~Q~rCe~--C~GsGLV~r~~~~~kC~~CGGFl 130 (133)
+-+...+|.. |+-.+|+ .|+|..|++-+
T Consensus 8 ~k~~~~~Cs~~~Ck~~~ll-----~f~C~~C~~~F 37 (63)
T 1x4v_A 8 RKIFTNKCERAGCRQREMM-----KLTCERCSRNF 37 (63)
T ss_dssp CCTTCCCCCSTTCCCCCSS-----CCBCSSSCCBC
T ss_pred CcccCCCCCccCCCCCCcc-----ceECCCCCccc
Confidence 3345678999 9988764 78999999864
No 69
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=44.79 E-value=12 Score=26.82 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=31.7
Q ss_pred eeeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 73 VTWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 73 ~~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
..--=+||-+.+. |=.|+|+|+-.-. .. -.|-| .++.||.| |.+|-|.+
T Consensus 50 ~GtVryvG~v~~~-~G~wvGVElDep~------GK--nDGsv-~G~rYF~C~p~~GiFvr 99 (113)
T 1whg_A 50 RGTVMYVGLTDFK-PGYWVGVRYDEPL------GK--NDGSV-NGKRYFECQAKYGAFVK 99 (113)
T ss_dssp EEEEEEEEECSSS-SSEEEEEEESSSC------CS--BBSEE-TTEECSCCCTTTEEEEC
T ss_pred EEEEEEecccCCC-CCEEEEEEecCCC------Cc--cCCEE-CCEEEeeeCCCeEEEEC
Confidence 3444567766653 6789999998742 22 23444 57789999 56666654
No 70
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.61 E-value=7.8 Score=18.86 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=10.4
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|..||--+
T Consensus 4 ~~k~~~C~~C~k~f 17 (35)
T 2elx_A 4 GSSGYVCALCLKKF 17 (35)
T ss_dssp CCCSEECSSSCCEE
T ss_pred CCCCeECCCCcchh
Confidence 45678999998654
No 71
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=44.05 E-value=7.4 Score=26.48 Aligned_cols=38 Identities=26% Similarity=0.593 Sum_probs=25.6
Q ss_pred ceeEEeeeeeceeeeeeeeccccccc----eeE----eecCeeecCCCCCCCc
Q 032810 86 TPFVVAGIEFSKRIIAQRRCEVCGGS----GLV----LREKDYFKCPECGMSY 130 (133)
Q Consensus 86 ~PFvvAg~EF~KRIi~Q~rCe~C~Gs----GLV----~r~~~~~kC~~CGGFl 130 (133)
.|.+|-++ |.+||+- |-|. -.| .+++...||++||-.+
T Consensus 21 ~P~lVpS~-~~~RiVG------C~g~p~d~h~v~W~~l~~g~~~RC~eCG~~f 66 (80)
T 2odx_A 21 DPIIIESY-DDYRYVG------CTGSPAGSHTIMWLKPTVNEVARCWECGSVY 66 (80)
T ss_dssp SCSEECCS-SSSCCEE------ESSSTTCCSCCEEECCCTTCEEECSSSCCEE
T ss_pred CCeEecCC-CCCeEEe------eeCCCCCcceEEEEEecCCCCeECCCCCeEE
Confidence 47777776 6888874 4443 222 2445789999999765
No 72
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=43.99 E-value=7.5 Score=29.77 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=13.4
Q ss_pred ecCeeecCCCCCCCccc
Q 032810 116 REKDYFKCPECGMSYGL 132 (133)
Q Consensus 116 r~~~~~kC~~CGGFl~~ 132 (133)
.++....||.||-+|-|
T Consensus 218 ~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 218 TSGDMITCPYCGRILYA 234 (256)
T ss_dssp HSSSCEECTTTCCEEEC
T ss_pred CCCCEEECCCCCeeEEe
Confidence 35678999999988754
No 73
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=43.81 E-value=15 Score=26.04 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=29.6
Q ss_pred eeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 74 TWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 74 ~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
.--=+||-+.+ .|=.|+|+|+-+- ..... |- ..+++||.| +.+|-|.+
T Consensus 39 GtVryvG~v~~-~~G~wvGVElDep------~GKnD--Gs-v~G~rYF~C~p~~G~Fv~ 87 (102)
T 1whj_A 39 GTLRFCGTTEF-ASGQWAGIELDEP------EGKNN--GS-VGRVQYFKCAPKYGIFAP 87 (102)
T ss_dssp EEEEEEEECSS-SCSEEEEEEESSS------CCSBS--SE-ETTEECCCCCTTTEEEEE
T ss_pred EEEEEeeecCC-CCCeEEEEEeCCC------CCccC--CE-ECCEEecccCCCeEEEEe
Confidence 33445665553 4568999999863 12233 33 347789999 56666654
No 74
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.67 E-value=8.3 Score=19.15 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=10.6
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 6 ~~k~~~C~~C~k~f 19 (36)
T 2elq_A 6 SGKPFKCSLCEYAT 19 (36)
T ss_dssp CCCSEECSSSSCEE
T ss_pred CCCCccCCCCCchh
Confidence 45678999998654
No 75
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=43.34 E-value=12 Score=26.46 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=27.6
Q ss_pred eEEEEeeeeccceeEEeeeee-ceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 75 WQIIVGAIAGVTPFVVAGIEF-SKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 75 Wqi~vG~iAGv~PFvvAg~EF-~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
--=+||-+.+. |=.|+|+|+ -+-. . +-.|-| .+++||.|+ ..|.|.+
T Consensus 35 tVryvG~v~~~-~G~wvGVEldDep~------G--KnDGsv-~G~rYF~C~p~~G~FVr 83 (104)
T 1ixd_A 35 VIRWIGQPPGL-NEVLAGLELEDECA------G--CTDGTF-RGTRYFTCALKKALFVK 83 (104)
T ss_dssp EEEEEECCSSS-CCCEEEEEESSCCT------T--CBSSEE-TTEECSCCCTTCBEEEE
T ss_pred EEEEecccCCC-CceEEEEEecCCCC------C--CCCCEE-CCEEeeecCCCcEEEEc
Confidence 33456766654 578999999 3311 1 123444 567788884 4565654
No 76
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.08 E-value=7.1 Score=20.78 Aligned_cols=16 Identities=25% Similarity=0.704 Sum_probs=10.4
Q ss_pred eecCeeecCCCCCCCc
Q 032810 115 LREKDYFKCPECGMSY 130 (133)
Q Consensus 115 ~r~~~~~kC~~CGGFl 130 (133)
-.+..+++|+.||--+
T Consensus 7 H~~~k~~~C~~C~k~f 22 (46)
T 2eon_A 7 GTGEKPYKCQVCGKAF 22 (46)
T ss_dssp CSSCCSCBCSSSCCBC
T ss_pred CCCCcccCCCCCCccc
Confidence 3455677888887544
No 77
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=42.87 E-value=8.8 Score=18.85 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=10.2
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|..||--+
T Consensus 4 ~~k~~~C~~C~k~f 17 (35)
T 1srk_A 4 GKRPFVCRICLSAF 17 (35)
T ss_dssp CCSCEECSSSCCEE
T ss_pred CCcCeeCCCCCccc
Confidence 45678999998644
No 78
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=42.61 E-value=6.1 Score=28.60 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=19.4
Q ss_pred eeeeeceeeeeeeecccccccee
Q 032810 91 AGIEFSKRIIAQRRCEVCGGSGL 113 (133)
Q Consensus 91 Ag~EF~KRIi~Q~rCe~C~GsGL 113 (133)
-||+|.+++-..-||+.|+..-+
T Consensus 73 CG~~F~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 73 CGFVFKAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TCCBCCCCSSCCSSCSSSCCCCB
T ss_pred CcCeecccCCCCCCCcCCCCCcc
Confidence 48999889999999999987543
No 79
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=42.54 E-value=11 Score=26.21 Aligned_cols=46 Identities=28% Similarity=0.363 Sum_probs=28.5
Q ss_pred EEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 76 QIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 76 qi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
-=++|-+.+ .|=.|+|+|+-+- ..... |-| .+++||.| |.+|-|.+
T Consensus 27 VryvG~~~~-~~G~wvGVElDep------~GKnD--Gsv-~G~rYF~C~p~~G~Fv~ 73 (96)
T 2z0w_A 27 IRFFGTTNF-APGYWYGIELEKP------HGKND--GSV-GGVQYFSCSPRYGIFAP 73 (96)
T ss_dssp EEEEECCSS-SSSCEEEEEESSS------CSSBS--SEE-TTEESSCCCTTSEEEEC
T ss_pred EEEeccCCC-CCCeEEEEEeCCC------CCCCC--CEE-CCEEeeecCCCeEEEEc
Confidence 335665543 3567999999764 12223 333 57789999 56676654
No 80
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=41.75 E-value=11 Score=30.33 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=19.2
Q ss_pred eeceeeeeeeecccccc--ceeEee-cCeeecCCCCCC
Q 032810 94 EFSKRIIAQRRCEVCGG--SGLVLR-EKDYFKCPECGM 128 (133)
Q Consensus 94 EF~KRIi~Q~rCe~C~G--sGLV~r-~~~~~kC~~CGG 128 (133)
+|+.-.-....|..|++ .=||.. +.-..-|.+||=
T Consensus 13 ~~~~~l~~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 13 RRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp ---------CCCSSCCCSSCCEEEEGGGTEEEETTTCB
T ss_pred ccCcccccCCcCCCCCCCCCceeEECCCCcEEeCCCCC
Confidence 56666667779999998 346654 345778999984
No 81
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=41.50 E-value=21 Score=27.63 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=19.5
Q ss_pred eeeccccccceeEeec----CeeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLRE----KDYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~----~~~~kC~~CGG 128 (133)
.-+|..|+...-+.-+ ..+.+||.|++
T Consensus 134 ~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~ 164 (279)
T 1ltl_A 134 VFECRGCMRHHAVTQSTNMITEPSLCSECGG 164 (279)
T ss_dssp EEEETTTCCEEEEECSSSSCCCCSCCTTTCC
T ss_pred EEEcCCCCCEEEEEecCCcccCCCcCCCCCC
Confidence 3479999977666543 24678999987
No 82
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=41.42 E-value=3.3 Score=30.45 Aligned_cols=27 Identities=30% Similarity=0.625 Sum_probs=19.2
Q ss_pred eeeccccccceeEeecCe--eecCCCCCCCcc
Q 032810 102 QRRCEVCGGSGLVLREKD--YFKCPECGMSYG 131 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~--~~kC~~CGGFl~ 131 (133)
-|.|-.| +||+..++ .-.||.|+.||-
T Consensus 16 lrAC~~C---~~V~t~~qF~~~gCpnC~~~l~ 44 (120)
T 3h7h_A 16 LRACLLC---SLVKTIDQFEYDGCDNCDAYLQ 44 (120)
T ss_dssp EEEETTT---CBEEEHHHHHHHCCTTTHHHHC
T ss_pred CeeeccC---CceechhhccCCCCCCCcchhh
Confidence 3667777 58886654 357999998763
No 83
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=41.18 E-value=15 Score=24.97 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=29.1
Q ss_pred eEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 75 WQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 75 Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
--=++|-+.+ .|=.|+|+|+-+- .... .|-| .++.||.| +.+|-|.+
T Consensus 18 tVryvG~~~~-~~G~wvGVelDep------~GKn--dGsv-~G~rYF~c~~~~G~Fvr 65 (86)
T 2e3i_A 18 FIQFLGETQF-APGQWAGIVLDEP------IGKN--DGSV-AGVRYFQCEPLKGIFTR 65 (86)
T ss_dssp EEEEEEECSS-SSSEEEEEEESSS------CSSB--SSEE-TTEESSCCSTTCEEEEC
T ss_pred EEEEeeeCCC-CCCcEEEEEeCCC------CCcc--CCEE-CCEEeeecCCCeEEEEc
Confidence 3345666553 4568999999863 1222 3444 57889999 45666654
No 84
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.09 E-value=7.8 Score=20.52 Aligned_cols=17 Identities=29% Similarity=0.763 Sum_probs=9.5
Q ss_pred EeecCeeecCCCCCCCc
Q 032810 114 VLREKDYFKCPECGMSY 130 (133)
Q Consensus 114 V~r~~~~~kC~~CGGFl 130 (133)
+-.+..+++|+.||--+
T Consensus 6 ~h~~~k~~~C~~C~k~f 22 (46)
T 2ytt_A 6 SGEGEKPYQCSECGKSF 22 (46)
T ss_dssp SCSCCCTTCCSSSCCCC
T ss_pred CCCCCCCeeCCCCCccc
Confidence 33445566677776543
No 85
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.97 E-value=10 Score=18.83 Aligned_cols=15 Identities=20% Similarity=0.618 Sum_probs=10.7
Q ss_pred cCeeecCCCCCCCcc
Q 032810 117 EKDYFKCPECGMSYG 131 (133)
Q Consensus 117 ~~~~~kC~~CGGFl~ 131 (133)
+..+++|+.||--+.
T Consensus 6 ~~k~~~C~~C~k~f~ 20 (36)
T 2els_A 6 SGKIFTCEYCNKVFK 20 (36)
T ss_dssp CCCCEECTTTCCEES
T ss_pred CCCCEECCCCCceeC
Confidence 346788999986543
No 86
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=40.97 E-value=9.9 Score=17.43 Aligned_cols=12 Identities=33% Similarity=0.993 Sum_probs=8.8
Q ss_pred eeecCCCCCCCc
Q 032810 119 DYFKCPECGMSY 130 (133)
Q Consensus 119 ~~~kC~~CGGFl 130 (133)
.+++|..||--+
T Consensus 2 k~~~C~~C~~~f 13 (30)
T 2m0d_A 2 KPYQCDYCGRSF 13 (30)
T ss_dssp CCEECTTTCCEE
T ss_pred cCccCCCCCccc
Confidence 357899998654
No 87
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=40.81 E-value=13 Score=25.69 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=27.9
Q ss_pred EEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 76 QIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 76 qi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
-=++|-+.+ .|=.|+|+|+-+- -... .|-| .+++||.|+ .+|.|.+
T Consensus 30 VryvG~~~~-~~G~wvGVelDep------~GKn--dGsv-~G~rYF~C~~~~G~Fvr 76 (93)
T 1txq_A 30 VAYVGATLF-ATGKWVGVILDEA------KGKN--DGTV-QGRKYFTCDEGHGIFVR 76 (93)
T ss_dssp EEEEECCSS-SSSCEEEEEESSS------CSSB--SSEE-TTEESCCCCTTCEEEEC
T ss_pred EEEeeecCC-CCCcEEEEEeCCC------CCCC--CCEE-CCEEeeecCCCeEEEEc
Confidence 335565543 4568999999863 1222 3433 477899994 4666654
No 88
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=40.76 E-value=8.6 Score=27.90 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=21.8
Q ss_pred eeeccccccceeEeecC----eeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREK----DYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~----~~~kC~~CGG 128 (133)
..+|-.|+..|-+.++= ...+|+.||.
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~ 127 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLPPQPKKCHFCQS 127 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSCCCCCCCTTTCC
T ss_pred CCcccEeCCccchhhhCCCCCCCCcccccCC
Confidence 35799999999998773 2579999985
No 89
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=40.75 E-value=9.5 Score=17.44 Aligned_cols=11 Identities=45% Similarity=1.159 Sum_probs=8.3
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
+++|+.||-.+
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 2m0f_A 2 PLKCRECGKQF 12 (29)
T ss_dssp CEECTTTSCEE
T ss_pred CccCCCCCCcc
Confidence 57899998654
No 90
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=40.37 E-value=12 Score=27.64 Aligned_cols=25 Identities=28% Similarity=0.693 Sum_probs=18.6
Q ss_pred eeeeccccccceeEeecCeeecCCCCCC
Q 032810 101 AQRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
..-+|.+|| -|..+.-+-+||.||.
T Consensus 137 ~~~~C~~CG---~i~~~~~p~~CP~Cg~ 161 (170)
T 3pwf_A 137 KVYICPICG---YTAVDEAPEYCPVCGA 161 (170)
T ss_dssp CEEECTTTC---CEEESCCCSBCTTTCC
T ss_pred CeeEeCCCC---CeeCCCCCCCCCCCCC
Confidence 345699885 5555677789999995
No 91
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=46.23 E-value=6 Score=18.25 Aligned_cols=11 Identities=27% Similarity=1.008 Sum_probs=8.1
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
+++|+.||--+
T Consensus 2 p~~C~~C~k~f 12 (26)
T 2lvu_A 2 PYVCERCGKRF 12 (26)
Confidence 57899998644
No 92
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=39.69 E-value=11 Score=17.55 Aligned_cols=11 Identities=18% Similarity=0.788 Sum_probs=7.8
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
+++|..||-.+
T Consensus 2 ~~~C~~C~k~f 12 (30)
T 1paa_A 2 AYACGLCNRAF 12 (30)
T ss_dssp CSBCTTTCCBC
T ss_pred CcCCcccCccc
Confidence 46788888654
No 93
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=39.58 E-value=16 Score=25.82 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=29.7
Q ss_pred eeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 74 TWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 74 ~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
.--=+||-+.+ .|=.|+|+|+-+- ... -.|-| .+++||.| +.+|-|.+
T Consensus 40 GtVryvG~v~~-~~G~wvGVElDep------~GK--nDGsv-~G~rYF~C~p~~GiFvr 88 (102)
T 1whh_A 40 GIVRFYGKTDF-APGYWYGIELDQP------TGK--HDGSV-FGVRYFTCAPRHGVFAP 88 (102)
T ss_dssp EEEEEEEECSS-SSSEEEEEECSSS------CCS--SSSEE-TTEECSCCCTTTEEEEC
T ss_pred EEEEEeeecCC-CCCeEEEEEeCCC------CCc--CCCEE-CCEEeeecCCCcEEEec
Confidence 33345665553 4568999999863 122 23444 57889999 45666654
No 94
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=39.42 E-value=3.3 Score=37.40 Aligned_cols=39 Identities=13% Similarity=0.388 Sum_probs=30.6
Q ss_pred eeeeeceeeeeeeeccccccceeEeecC--eeecCCCCCCC
Q 032810 91 AGIEFSKRIIAQRRCEVCGGSGLVLREK--DYFKCPECGMS 129 (133)
Q Consensus 91 Ag~EF~KRIi~Q~rCe~C~GsGLV~r~~--~~~kC~~CGGF 129 (133)
.|.|-..+|.....|+.|.|+|--.-.+ ....|+.|.|-
T Consensus 180 ~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs 220 (669)
T 3pmq_A 180 NMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNS 220 (669)
T ss_dssp SSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSST
T ss_pred CCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCC
Confidence 4677788899999999999999633221 46789999985
No 95
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=39.41 E-value=7.6 Score=18.31 Aligned_cols=12 Identities=25% Similarity=0.844 Sum_probs=8.4
Q ss_pred eeecCCCCCCCc
Q 032810 119 DYFKCPECGMSY 130 (133)
Q Consensus 119 ~~~kC~~CGGFl 130 (133)
.+++|+.||--+
T Consensus 2 k~~~C~~C~k~f 13 (27)
T 2kvg_A 2 APYRCPLCRAGC 13 (27)
T ss_dssp CTEEETTTTEEE
T ss_pred cCcCCCCCCccc
Confidence 357899998544
No 96
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=39.39 E-value=13 Score=26.61 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=27.7
Q ss_pred EEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 76 QIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 76 qi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
-=+||-+. ..|=.|+|+|+-+- -... .|-| .+++||.|+ .+|-|.+
T Consensus 51 VRyvG~v~-~~~G~wvGVElDep------~GKn--DGsv-~G~rYF~C~p~~GiFVr 97 (112)
T 2coy_A 51 VAYVGATL-FATGKWVGVILDEA------KGKN--DGTV-QGRKYFTCDEGHGIFVR 97 (112)
T ss_dssp EEEEECCS-SSSSCEEEEEESSS------CSSB--SSEE-TTEECSCCCTTTEEEEC
T ss_pred EEEeeecC-CCCCcEEEEEECCC------CCCC--CCEE-CCEEeeecCCCeEEEEc
Confidence 33455554 34557999999863 1222 3433 477899994 5666654
No 97
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=39.21 E-value=15 Score=25.62 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=27.7
Q ss_pred EEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 77 IIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 77 i~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
=++|-+.+ .|=.|+|+|+-+-. .... |- ..+++||.| +.+|-|.+
T Consensus 34 ryvG~v~~-~~G~wvGVelDep~------GKnD--Gs-v~G~rYF~C~~~~G~Fv~ 79 (95)
T 2cp0_A 34 RFCGTTEF-ASGQWVGVELDEPE------GKND--GS-VGGVRYFICPPKQGLFAS 79 (95)
T ss_dssp EEEECCSS-SCSCEEEEEESSSC------CSBC--SE-ETTEECCCCSSSCEEEEC
T ss_pred EEecccCC-CCCcEEEEEecCCC------CcCC--CE-ECCEEeeecCCCcEEEEc
Confidence 35565542 45679999998741 2222 33 357789999 45666654
No 98
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=38.86 E-value=9.6 Score=20.14 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=6.0
Q ss_pred cCeeecCCCCCC
Q 032810 117 EKDYFKCPECGM 128 (133)
Q Consensus 117 ~~~~~kC~~CGG 128 (133)
+..+++|+.||-
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2el6_A 9 GVNPYKCSQCEK 20 (46)
T ss_dssp CCCSEECSSSSC
T ss_pred CCCCeECCCCCc
Confidence 334455555554
No 99
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=38.77 E-value=17 Score=28.19 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=30.1
Q ss_pred eeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 74 TWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 74 ~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
.--=+||-+.+ .|=.|+|+|+-+-. ... .|-| .+++||.| +.+|-|.+
T Consensus 53 GtVRyvG~v~~-~~G~WvGVELDeP~------GKn--DGsv-~G~rYF~C~p~~GiFVr 101 (172)
T 2cp6_A 53 GVVRFLGETDF-AKGEWCGVELDEPL------GKN--DGAV-AGTRYFQCQPKYGLFAP 101 (172)
T ss_dssp EEEEEEEECSS-SSSEEEEEEESSSC------CSB--SSEE-TTEECCCCCTTTEEEEE
T ss_pred EEEEEeCcCCC-CCCcEEEEEecCCC------Ccc--CCEE-CCEEeeeeCCCeEEEec
Confidence 33445666543 45679999998741 222 3444 57889999 45777765
No 100
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.75 E-value=9.4 Score=18.95 Aligned_cols=14 Identities=14% Similarity=0.539 Sum_probs=10.1
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|..||-.+
T Consensus 6 ~~k~~~C~~C~k~f 19 (36)
T 2elv_A 6 SGLLYDCHICERKF 19 (36)
T ss_dssp CCCCEECSSSCCEE
T ss_pred CCCCeECCCCCCcc
Confidence 34678899998654
No 101
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=38.72 E-value=14 Score=27.99 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=19.3
Q ss_pred eeccccccceeEeecCeeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
-+|+. |.=|+..+....+||.||-
T Consensus 170 A~c~~--g~~m~~~~~~~m~cp~cg~ 193 (209)
T 2nn6_I 170 AHSES--GIQMVPISWCEMQCPKTHT 193 (209)
T ss_dssp CBCSS--SCBCEEEETTEEECTTTTC
T ss_pred EEcCC--CCEEEEccCCEEECCCCCC
Confidence 36887 6677778878899999995
No 102
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=38.58 E-value=19 Score=25.02 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=28.1
Q ss_pred EEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 77 IIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 77 i~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
=++|-+.+ .|=.|+|+|+-+- .... .|-| .+++||.| |.+|-|.+
T Consensus 36 ryvG~v~~-~~G~wvGVElDep------~GKn--DGsv-~G~rYF~C~p~~G~Fvr 81 (95)
T 2cp2_A 36 QYLGETQF-APGQWAGVVLDDP------VGKN--DGAV-GGVRYFECPALQGIFTR 81 (95)
T ss_dssp EEEEECSS-SCSEEEEEEESSS------CSSB--BSEE-TTEECCCCCTTTEEEEC
T ss_pred EEecccCC-CCCEEEEEEecCC------CCcc--CCEE-CCEEecccCCCeEEEEc
Confidence 35665553 4568999999864 1222 3444 57889999 45666654
No 103
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.48 E-value=16 Score=25.34 Aligned_cols=27 Identities=22% Similarity=0.664 Sum_probs=21.1
Q ss_pred eeeccccccceeEeecC----------eeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREK----------DYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~----------~~~kC~~CGG 128 (133)
...|+.|+....+.-.. .+++|..||-
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~ 108 (113)
T 3h0g_I 72 DKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGF 108 (113)
T ss_dssp CSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCC
T ss_pred ccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCC
Confidence 37899999998887432 3789999984
No 104
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.47 E-value=7.7 Score=19.30 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=10.3
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 6 ~~k~~~C~~C~k~f 19 (37)
T 2elo_A 6 SGRSYSCPVCEKSF 19 (37)
T ss_dssp CCCCCEETTTTEEC
T ss_pred CCCCcCCCCCCCcc
Confidence 45678899998544
No 105
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=38.34 E-value=12 Score=17.09 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=7.6
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
+++|+.||--+
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 1ard_A 2 SFVCEVCTRAF 12 (29)
T ss_dssp CCBCTTTCCBC
T ss_pred CeECCCCCccc
Confidence 46788887544
No 106
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.11 E-value=9.5 Score=19.57 Aligned_cols=15 Identities=33% Similarity=0.984 Sum_probs=11.1
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 6 ~~~k~~~C~~C~k~f 20 (41)
T 2ept_A 6 SGQRVYECQECGKSF 20 (41)
T ss_dssp CCCCCEECSSSCCEE
T ss_pred CCCCCeECCCCCCCc
Confidence 456678999998654
No 107
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=37.97 E-value=13 Score=29.81 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=26.8
Q ss_pred eeceeeeeeeecccccc-c-eeEee-cCeeecCCCCCCC
Q 032810 94 EFSKRIIAQRRCEVCGG-S-GLVLR-EKDYFKCPECGMS 129 (133)
Q Consensus 94 EF~KRIi~Q~rCe~C~G-s-GLV~r-~~~~~kC~~CGGF 129 (133)
+|.+-+-...+|..|++ + =||.. +.--.-|.+||=-
T Consensus 13 ~~~~~ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 13 RRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCSSCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred ccccccccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 56777778889999998 3 36653 3557789999954
No 108
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=37.93 E-value=12 Score=16.96 Aligned_cols=10 Identities=40% Similarity=1.055 Sum_probs=6.9
Q ss_pred ecCCCCCCCc
Q 032810 121 FKCPECGMSY 130 (133)
Q Consensus 121 ~kC~~CGGFl 130 (133)
++|..||--+
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 5788887544
No 109
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=37.64 E-value=19 Score=24.75 Aligned_cols=45 Identities=22% Similarity=0.393 Sum_probs=28.3
Q ss_pred EEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 77 IIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 77 i~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
=++|-+.+ .|=.|+|+|+-+-. ... .|-| .+..||.| +.+|-|.+
T Consensus 19 ryvG~~~~-~~G~wvGVelDep~------GKn--dGsv-~G~rYF~C~p~~G~Fv~ 64 (90)
T 2e3h_A 19 RFLGETDF-AKGEWCGVELDEPL------GKN--DGAV-AGTRYFQCQPKYGLFAP 64 (90)
T ss_dssp EEEEECSS-SSSEEEEEEESSSC------CSB--SSEE-TTEESCCCCTTCEEEEE
T ss_pred EEeccCCC-CCCeEEEEEECCCC------CCC--CCEE-CCEEeeecCCCcEEEEc
Confidence 35665543 35589999998741 222 3444 57889999 45777764
No 110
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=37.02 E-value=12 Score=22.49 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=20.4
Q ss_pred eeccccccceeEeecC---eeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREK---DYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~---~~~kC~~CGG 128 (133)
.+|-.|+..|-+.++= ....|+.||.
T Consensus 13 ~~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~ 41 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRAPRKKGCWKCGK 41 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSCSCCBCTTTCC
T ss_pred cceeeeCCCCcChhhcCCCCCCEeCCCCC
Confidence 4699999999888763 2468999985
No 111
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=36.53 E-value=14 Score=21.55 Aligned_cols=10 Identities=40% Similarity=1.069 Sum_probs=6.1
Q ss_pred eeecCCCCCC
Q 032810 119 DYFKCPECGM 128 (133)
Q Consensus 119 ~~~kC~~CGG 128 (133)
+..+|-+||-
T Consensus 20 ~~l~C~aCG~ 29 (36)
T 1k81_A 20 HLLKCMACGA 29 (36)
T ss_dssp EEEEEETTTE
T ss_pred EEEEhhcCCC
Confidence 4556666664
No 112
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=36.38 E-value=12 Score=23.50 Aligned_cols=18 Identities=33% Similarity=0.671 Sum_probs=14.3
Q ss_pred EeecCeeecCCCCCCCcc
Q 032810 114 VLREKDYFKCPECGMSYG 131 (133)
Q Consensus 114 V~r~~~~~kC~~CGGFl~ 131 (133)
..++..+++|..||--+.
T Consensus 7 ~~~~ekpy~C~~CgK~F~ 24 (66)
T 2epp_A 7 GLREAGILPCGLCGKVFT 24 (66)
T ss_dssp SCCCCCCCCCTTTCCCCS
T ss_pred CCCCccCcCCCCCCCccC
Confidence 367788999999997653
No 113
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.12 E-value=14 Score=19.31 Aligned_cols=13 Identities=31% Similarity=0.889 Sum_probs=7.1
Q ss_pred cCeeecCCCCCCC
Q 032810 117 EKDYFKCPECGMS 129 (133)
Q Consensus 117 ~~~~~kC~~CGGF 129 (133)
+..+++|+.||--
T Consensus 9 ~~k~~~C~~C~k~ 21 (46)
T 2epz_A 9 GEKPFDCIDCGKA 21 (46)
T ss_dssp CCCSBCCTTTCCC
T ss_pred CCCCeECCCCCce
Confidence 3445666666543
No 114
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.05 E-value=11 Score=17.34 Aligned_cols=11 Identities=27% Similarity=1.020 Sum_probs=8.2
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
+++|..||--+
T Consensus 3 ~~~C~~C~k~f 13 (28)
T 2kvf_A 3 PYSCSVCGKRF 13 (28)
T ss_dssp SEECSSSCCEE
T ss_pred CccCCCCCccc
Confidence 57899998644
No 115
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.04 E-value=14 Score=19.46 Aligned_cols=13 Identities=31% Similarity=0.917 Sum_probs=6.6
Q ss_pred cCeeecCCCCCCC
Q 032810 117 EKDYFKCPECGMS 129 (133)
Q Consensus 117 ~~~~~kC~~CGGF 129 (133)
+..+++|+.||--
T Consensus 9 ~~k~~~C~~C~k~ 21 (46)
T 2elz_A 9 VEKPYKCEDCGKG 21 (46)
T ss_dssp CCSSCBCSSSCCB
T ss_pred CCCCeeCcccCch
Confidence 3445555555543
No 116
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=35.91 E-value=20 Score=28.60 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=16.6
Q ss_pred eeeccccccceeEeec------------CeeecCCCCCCCc
Q 032810 102 QRRCEVCGGSGLVLRE------------KDYFKCPECGMSY 130 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~------------~~~~kC~~CGGFl 130 (133)
.-+|..|+-. ...+ ....+|+ |||.|
T Consensus 154 ~~~C~~C~~~--~~~~~~~~~~~~~~~~~~~P~C~-Cgg~l 191 (290)
T 3u31_A 154 EAVCCTCNKI--VKLNKIMLQKTSHFMHQLPPECP-CGGIF 191 (290)
T ss_dssp EEEETTTCCE--EECCTGGGSTTSSTTTSSSCBCT-TSCBE
T ss_pred cceeCCCCCc--CChhHhhhcccccccccCCCCCC-CCCEE
Confidence 4689999743 2211 1256899 99975
No 117
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=35.68 E-value=11 Score=17.21 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=8.2
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
+++|+.||--+
T Consensus 2 ~~~C~~C~k~f 12 (30)
T 1klr_A 2 TYQCQYCEFRS 12 (30)
T ss_dssp CCCCSSSSCCC
T ss_pred CccCCCCCCcc
Confidence 46899998654
No 118
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=35.58 E-value=12 Score=25.23 Aligned_cols=25 Identities=24% Similarity=0.643 Sum_probs=19.8
Q ss_pred eeeeccc--cccceeEeecCeeecCCCCCCCc
Q 032810 101 AQRRCEV--CGGSGLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~--C~GsGLV~r~~~~~kC~~CGGFl 130 (133)
+-+||.. |+--+| .+|+|..||+-+
T Consensus 13 ~g~~Cs~~~C~~~df-----lpf~C~~C~~~F 39 (75)
T 1wys_A 13 IGQHCQVQHCRQRDF-----LPFVCDGCSGIF 39 (75)
T ss_dssp CCCCCSCTTTCCCSC-----CCEECTTTCCEE
T ss_pred cCCCcCcccCCCccc-----eeeECcccCcCc
Confidence 3578998 998755 489999999854
No 119
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.51 E-value=13 Score=19.56 Aligned_cols=11 Identities=55% Similarity=1.213 Sum_probs=5.7
Q ss_pred CeeecCCCCCC
Q 032810 118 KDYFKCPECGM 128 (133)
Q Consensus 118 ~~~~kC~~CGG 128 (133)
..+++|+.||-
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2enc_A 10 EKPFKCEECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCcCCCCCCC
Confidence 34555555554
No 120
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=35.47 E-value=8.7 Score=25.66 Aligned_cols=28 Identities=32% Similarity=0.930 Sum_probs=20.1
Q ss_pred eeeeeeeeccccccc-eeEeecCeeecCCCCCCCc
Q 032810 97 KRIIAQRRCEVCGGS-GLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 97 KRIi~Q~rCe~C~Gs-GLV~r~~~~~kC~~CGGFl 130 (133)
+.-....||..|+-. ||. .|+| -||+-+
T Consensus 10 ~~~~~~~rC~~C~kkvgl~-----~f~C-rCg~~F 38 (64)
T 1wg2_A 10 RPVRPNNRCFSCNKKVGVM-----GFKC-KCGSTF 38 (64)
T ss_dssp CCSCCSCSCTTTCCCCTTS-----CEEC-TTSCEE
T ss_pred CCCCcCCcChhhCCccccc-----CeEe-ecCCEe
Confidence 344456899999864 664 5899 799854
No 121
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.40 E-value=11 Score=19.98 Aligned_cols=13 Identities=38% Similarity=0.938 Sum_probs=7.4
Q ss_pred cCeeecCCCCCCC
Q 032810 117 EKDYFKCPECGMS 129 (133)
Q Consensus 117 ~~~~~kC~~CGGF 129 (133)
+..+++|+.||--
T Consensus 9 ~~k~~~C~~C~k~ 21 (46)
T 2ytm_A 9 GEKPYKCMECGKA 21 (46)
T ss_dssp SCCSSSBTTTTBC
T ss_pred CCCCcCCCCCCch
Confidence 3455666666643
No 122
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=35.25 E-value=12 Score=24.87 Aligned_cols=25 Identities=28% Similarity=0.684 Sum_probs=17.6
Q ss_pred eeccccccceeEeecCeeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
-.|..|+-.=- ..+....+|++||.
T Consensus 29 Y~C~~CG~~~e-~~~~d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLS-LSRTDAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEEC-CCTTSTTCCSSSCC
T ss_pred EECCCCCCcce-eCCCCCccCCCCCc
Confidence 46888875421 23567789999997
No 123
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=35.16 E-value=8.9 Score=21.53 Aligned_cols=15 Identities=27% Similarity=0.888 Sum_probs=11.4
Q ss_pred cCeeecCCCCCCCcc
Q 032810 117 EKDYFKCPECGMSYG 131 (133)
Q Consensus 117 ~~~~~kC~~CGGFl~ 131 (133)
+..+++|+.||--+.
T Consensus 5 gekp~~C~~CgK~F~ 19 (36)
T 1fv5_A 5 KPARFMCLPCGIAFS 19 (36)
T ss_dssp SCCCCEETTTTEECS
T ss_pred CccCeECCCCCCccC
Confidence 457899999996543
No 124
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=35.06 E-value=13 Score=18.84 Aligned_cols=13 Identities=15% Similarity=0.626 Sum_probs=9.6
Q ss_pred CeeecCCCCCCCc
Q 032810 118 KDYFKCPECGMSY 130 (133)
Q Consensus 118 ~~~~kC~~CGGFl 130 (133)
..+++|..||--+
T Consensus 4 ~k~~~C~~C~k~f 16 (39)
T 1njq_A 4 PRSYTCSFCKREF 16 (39)
T ss_dssp SSSEECTTTCCEE
T ss_pred CCceECCCCCccc
Confidence 4578899998644
No 125
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=34.98 E-value=36 Score=21.29 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=23.1
Q ss_pred ceeeeeeeeccccccceeEeecC-------eeecCCCCC
Q 032810 96 SKRIIAQRRCEVCGGSGLVLREK-------DYFKCPECG 127 (133)
Q Consensus 96 ~KRIi~Q~rCe~C~GsGLV~r~~-------~~~kC~~CG 127 (133)
+.|+++...|..|.|+-.+.... .-.-||-|.
T Consensus 5 ~~r~~i~L~ct~c~~~~Y~t~Knr~~~rLelkKycp~~~ 43 (52)
T 2ftc_P 5 SKNILVRMVSEAGTGFCFNTKRNRLREKLTLLHYDPVVK 43 (52)
T ss_pred cceeEEEEEEecCCCeeEEEecCCCCceeEEEccCCCCC
Confidence 46999999999999988765432 123477775
No 126
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=34.84 E-value=14 Score=18.77 Aligned_cols=15 Identities=27% Similarity=0.775 Sum_probs=10.9
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 7 ~~~~~~~C~~C~k~f 21 (42)
T 2epc_A 7 GGETPYLCGQCGKSF 21 (42)
T ss_dssp CSSCCEECSSSCCEE
T ss_pred CCCCCeECCCCCccc
Confidence 345678999998654
No 127
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=34.26 E-value=14 Score=19.40 Aligned_cols=11 Identities=18% Similarity=0.054 Sum_probs=8.2
Q ss_pred cCeeecCCCCC
Q 032810 117 EKDYFKCPECG 127 (133)
Q Consensus 117 ~~~~~kC~~CG 127 (133)
+...+.|+.||
T Consensus 35 ~~~~~~C~~cg 45 (45)
T 2epq_A 35 GSVGKSGPSSG 45 (45)
T ss_dssp CCCCCCCCCCC
T ss_pred CCCCCCCcCCC
Confidence 34678888887
No 128
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=33.98 E-value=18 Score=28.96 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=18.0
Q ss_pred eeeeccccccceeEee--------cCeeecCCCCCCCc
Q 032810 101 AQRRCEVCGGSGLVLR--------EKDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r--------~~~~~kC~~CGGFl 130 (133)
..-+|..|+-. ... ....-+|+.|||.|
T Consensus 138 ~~~~C~~C~~~--~~~~~~~~~i~~~~~P~C~~Cgg~l 173 (285)
T 3glr_A 138 ASATCTVCQRP--FPGEDIRADVMADRVPRCPVCTGVV 173 (285)
T ss_dssp EEEEETTTCCE--EEGGGGHHHHHTTCCCBCTTTCCBE
T ss_pred CeEEECCCCCc--CCHHHHHHHhhcCCCCCCCCCCCcc
Confidence 34589999742 221 12356899999965
No 129
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.73 E-value=17 Score=19.15 Aligned_cols=15 Identities=40% Similarity=0.939 Sum_probs=10.4
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~k~~~C~~C~k~F 22 (46)
T 2en9_A 8 AGKKLFKCNECKKTF 22 (46)
T ss_dssp CSSCCCBCTTTCCBC
T ss_pred CCCCCEECCccCccc
Confidence 445678888887654
No 130
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=33.72 E-value=19 Score=22.49 Aligned_cols=9 Identities=44% Similarity=1.213 Sum_probs=6.8
Q ss_pred eecCCCCCC
Q 032810 120 YFKCPECGM 128 (133)
Q Consensus 120 ~~kC~~CGG 128 (133)
..+||.||-
T Consensus 35 dw~CP~Cg~ 43 (52)
T 1yk4_A 35 DWVCPLCGA 43 (52)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 348999984
No 131
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=33.52 E-value=12 Score=18.45 Aligned_cols=11 Identities=36% Similarity=1.117 Sum_probs=8.2
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
+++|..||--+
T Consensus 2 p~~C~~C~k~f 12 (32)
T 2kfq_A 2 AFACPACPKRF 12 (32)
T ss_dssp CSSSSSSCTTH
T ss_pred CCCCCCCCccc
Confidence 57899998644
No 132
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=33.47 E-value=14 Score=20.92 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=18.0
Q ss_pred eccccccceeEeecC---eeecCCCCCC
Q 032810 104 RCEVCGGSGLVLREK---DYFKCPECGM 128 (133)
Q Consensus 104 rCe~C~GsGLV~r~~---~~~kC~~CGG 128 (133)
+|-.|+..|=+.++= ....|+.||.
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~ 29 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPRQEGCWNCGS 29 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCCCSSCTTTCC
T ss_pred eeeccCCCCcccccCCCCCCCccccCCC
Confidence 477888888887762 2467888885
No 133
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.45 E-value=15 Score=18.79 Aligned_cols=15 Identities=27% Similarity=0.851 Sum_probs=10.8
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|..||--+
T Consensus 7 ~~~k~~~C~~C~k~f 21 (42)
T 2en2_A 7 GGEKPYKCETCGARF 21 (42)
T ss_dssp CSSCSEECTTTCCEE
T ss_pred CCCCCEeCCCcChhh
Confidence 345678899998654
No 134
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=33.37 E-value=20 Score=27.12 Aligned_cols=25 Identities=36% Similarity=0.801 Sum_probs=17.5
Q ss_pred eeeeccccccceeEeecCeeecCCCCCCCc
Q 032810 101 AQRRCEVCGGSGLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~~~~~kC~~CGGFl 130 (133)
+-.+|+.|+| -|+..+..|. |.|++
T Consensus 77 al~~CP~C~G-~l~y~~~~Y~----C~G~i 101 (160)
T 2riq_A 77 ALLPCEECSG-QLVFKSDAYY----CTGDV 101 (160)
T ss_dssp EECCCTTTCC-CEEEETTEEE----ECCEE
T ss_pred CCCCCCCCCC-EEEEeCCeEE----ECCCC
Confidence 3578999996 5787775443 66765
No 135
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=33.33 E-value=15 Score=18.80 Aligned_cols=14 Identities=29% Similarity=1.051 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 7 ~~k~~~C~~C~k~f 20 (42)
T 2el5_A 7 GENPYECSECGKAF 20 (42)
T ss_dssp SCCSEECSSSCCEE
T ss_pred CCCCccCCCcChhh
Confidence 45678999998654
No 136
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=33.30 E-value=23 Score=32.62 Aligned_cols=28 Identities=39% Similarity=0.796 Sum_probs=23.6
Q ss_pred eeeccccccceeEeec-----CeeecCCCCCCC
Q 032810 102 QRRCEVCGGSGLVLRE-----KDYFKCPECGMS 129 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~-----~~~~kC~~CGGF 129 (133)
..||+.|.|.|.+..+ ..+..|+.|.|-
T Consensus 713 ~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~ 745 (916)
T 3pih_A 713 GGRCEACQGQGYVKIEMLFLPDVYVECDVCKGK 745 (916)
T ss_dssp TTBCTTTTTSSEEEECCTTSCCEEEECTTTTTS
T ss_pred ccccccccCcceEEEeeeccCcceeeccccccc
Confidence 4589999999999876 458899999884
No 137
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.27 E-value=17 Score=29.48 Aligned_cols=27 Identities=26% Similarity=0.870 Sum_probs=16.6
Q ss_pred eeeeccccccc---eeEee----c-CeeecCCCCC
Q 032810 101 AQRRCEVCGGS---GLVLR----E-KDYFKCPECG 127 (133)
Q Consensus 101 ~Q~rCe~C~Gs---GLV~r----~-~~~~kC~~CG 127 (133)
.+..|++||+. ++|.. + ..|..|.-||
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~ 215 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCA 215 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCC
Confidence 46789999985 45542 2 2466665555
No 138
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.14 E-value=11 Score=25.20 Aligned_cols=24 Identities=42% Similarity=1.060 Sum_probs=17.9
Q ss_pred eeeeccccccc-eeEeecCeeecCCCCCCCc
Q 032810 101 AQRRCEVCGGS-GLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~C~Gs-GLV~r~~~~~kC~~CGGFl 130 (133)
...||..|+-. ||. .|+| .||+-+
T Consensus 14 ~~~rC~~C~kkvgl~-----~f~C-rCg~~F 38 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT-----GFMC-RCGTTF 38 (64)
T ss_dssp SCCCCTTTCCCCCTT-----CEEC-SSSCEE
T ss_pred cCCcChhhCCccCcc-----CEEe-ecCCEe
Confidence 45799999864 665 5899 699854
No 139
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=33.08 E-value=14 Score=21.97 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=20.1
Q ss_pred eeccccccceeEeecC---eeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREK---DYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~---~~~kC~~CGG 128 (133)
.+|-.|+..|-+.++= ....|+.||.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~ 35 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAPRRQGCWKCGK 35 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCSSCCSCSSSCC
T ss_pred CeeeecCCCCcChhhCcCCCCCeeCcCCC
Confidence 4699999999988763 2357999985
No 140
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=33.03 E-value=19 Score=18.92 Aligned_cols=14 Identities=43% Similarity=1.035 Sum_probs=7.8
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2ely_A 9 GEKPFKCVECGKGF 22 (46)
T ss_dssp CCCSBCCSSSCCCB
T ss_pred CCCCcccCccCccc
Confidence 34556666666443
No 141
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=33.02 E-value=16 Score=24.57 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=10.9
Q ss_pred eccccccceeEeecC----eeecCCCCCC
Q 032810 104 RCEVCGGSGLVLREK----DYFKCPECGM 128 (133)
Q Consensus 104 rCe~C~GsGLV~r~~----~~~kC~~CGG 128 (133)
||-.|+..|=+.++. ....||.||.
T Consensus 26 rcY~c~~~gh~~~~c~~p~~~~~CYnCG~ 54 (83)
T 3nyb_B 26 RAYILVDDNEKAKPKVLPFHTIYCYNCGG 54 (83)
T ss_dssp CCCCBC-------------CCCBCSSSSC
T ss_pred cccccccCCcccccccCCCCCCeecccCC
Confidence 566777777665543 2367888885
No 142
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=32.72 E-value=18 Score=25.66 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=17.7
Q ss_pred eeeeeccccccceeEeec-CeeecCCCCCCCc
Q 032810 100 IAQRRCEVCGGSGLVLRE-KDYFKCPECGMSY 130 (133)
Q Consensus 100 i~Q~rCe~C~GsGLV~r~-~~~~kC~~CGGFl 130 (133)
.-..+|..|+- .... .....||.||+-+
T Consensus 130 ~~~y~C~~Cg~---~~~~~~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 130 KWRYVCIGCGR---KFSTLPPGGVCPDCGSKV 158 (165)
T ss_dssp CCCEEESSSCC---EESSCCGGGBCTTTCCBE
T ss_pred cEEEECCCCCC---cccCCCCCCcCCCCCCcc
Confidence 34578998873 2322 2345899999753
No 143
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.62 E-value=15 Score=18.67 Aligned_cols=14 Identities=21% Similarity=0.795 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 7 ~~k~~~C~~C~k~f 20 (42)
T 2yte_A 7 GEKPYSCAECKETF 20 (42)
T ss_dssp SCCSCBCTTTCCBC
T ss_pred CCCCeECCCCCCcc
Confidence 45678999998654
No 144
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.43 E-value=15 Score=19.06 Aligned_cols=15 Identities=13% Similarity=0.833 Sum_probs=10.6
Q ss_pred cCeeecCCCCCCCcc
Q 032810 117 EKDYFKCPECGMSYG 131 (133)
Q Consensus 117 ~~~~~kC~~CGGFl~ 131 (133)
+..+++|+.||--+.
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (44)
T 2emb_A 9 TRKRYECSKCQATFN 23 (44)
T ss_dssp CCSSEECTTTCCEES
T ss_pred CCCCeECCCCCCccC
Confidence 456788999986543
No 145
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.42 E-value=24 Score=22.20 Aligned_cols=34 Identities=29% Similarity=0.680 Sum_probs=20.1
Q ss_pred eeeeeeeeccccccc---e--eEeecCe----eecCCCCCCCc
Q 032810 97 KRIIAQRRCEVCGGS---G--LVLREKD----YFKCPECGMSY 130 (133)
Q Consensus 97 KRIi~Q~rCe~C~Gs---G--LV~r~~~----~~kC~~CGGFl 130 (133)
.++-...+|..|+.. | +...++. -|+|..|+-.|
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L 52 (80)
T 2dj7_A 10 IKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVIL 52 (80)
T ss_dssp CCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBC
T ss_pred cCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCc
Confidence 344456778888752 2 2233333 38898887655
No 146
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=32.39 E-value=18 Score=24.82 Aligned_cols=24 Identities=38% Similarity=0.897 Sum_probs=16.0
Q ss_pred eeeccccccceeEeecC----------------e--eecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREK----------------D--YFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~----------------~--~~kC~~CGG 128 (133)
.-+|.+|+ .|..+. - ..+||.||-
T Consensus 27 ~y~C~vCG---yvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 27 LFRCIQCG---FEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp EEEETTTC---CEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred eEEeCCCC---EEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 56788885 666541 2 348999984
No 147
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.39 E-value=15 Score=19.18 Aligned_cols=15 Identities=27% Similarity=0.910 Sum_probs=11.1
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|..||--+
T Consensus 8 ~~~k~~~C~~C~k~F 22 (44)
T 2epv_A 8 SGEKPYECNECGKAF 22 (44)
T ss_dssp CCCCSEECSSSCCEE
T ss_pred CCCcCeECCCCCccc
Confidence 345688999998654
No 148
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.07 E-value=16 Score=18.94 Aligned_cols=14 Identities=29% Similarity=0.876 Sum_probs=10.7
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (44)
T 2yu5_A 9 GENPFKCSKCDRVF 22 (44)
T ss_dssp CCCSEECSSSSCEE
T ss_pred CCCCeECCCCCchh
Confidence 45678999998654
No 149
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.03 E-value=14 Score=19.38 Aligned_cols=9 Identities=56% Similarity=1.420 Sum_probs=4.3
Q ss_pred eeecCCCCC
Q 032810 119 DYFKCPECG 127 (133)
Q Consensus 119 ~~~kC~~CG 127 (133)
.+++|+.||
T Consensus 11 k~~~C~~C~ 19 (46)
T 2em7_A 11 KPYKCEECG 19 (46)
T ss_dssp CSEECSSSC
T ss_pred cCccCCCcc
Confidence 344555554
No 150
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=31.87 E-value=24 Score=26.44 Aligned_cols=46 Identities=26% Similarity=0.329 Sum_probs=28.4
Q ss_pred EEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 76 QIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 76 qi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
-=+||-+.+ .|=.|+|+|+-+- .... .|-| .+.+||.| +.+|-|.+
T Consensus 81 VRyvG~v~~-~~G~WvGVELDeP------~GKn--DGsv-~G~rYF~C~p~~GiFVr 127 (141)
T 2cp5_A 81 IQFLGETQF-APGQWAGIVLDEP------IGKN--DGSV-AGVRYFQCEPLKGIFTR 127 (141)
T ss_dssp EEEEEECSS-SSSEEEEEEESSS------CCSC--BSEE-TTEESSCCCTTTEEEEC
T ss_pred EEEeeecCC-CCCcEEEEEeCCC------CCcc--CCEE-CCEEeeecCCCcEEEec
Confidence 335665543 4568999999874 1222 3444 57889999 45566653
No 151
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.68 E-value=16 Score=19.17 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=6.8
Q ss_pred cCeeecCCCCCCC
Q 032810 117 EKDYFKCPECGMS 129 (133)
Q Consensus 117 ~~~~~kC~~CGGF 129 (133)
+..+++|+.||--
T Consensus 9 ~~k~~~C~~C~k~ 21 (46)
T 2ytq_A 9 GEKPYGCSECGKA 21 (46)
T ss_dssp CCCSCBCSSSCCB
T ss_pred CCCCcCCCccChh
Confidence 3445566666543
No 152
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.63 E-value=20 Score=18.74 Aligned_cols=15 Identities=33% Similarity=0.937 Sum_probs=10.9
Q ss_pred cCeeecCCCCCCCcc
Q 032810 117 EKDYFKCPECGMSYG 131 (133)
Q Consensus 117 ~~~~~kC~~CGGFl~ 131 (133)
+..+++|+.||--+.
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2eq1_A 9 GEKPYKCNECGKAFR 23 (46)
T ss_dssp CSCCCCCTTTTCCCS
T ss_pred CCCCeECCcCChhhC
Confidence 456788999986553
No 153
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.59 E-value=17 Score=18.91 Aligned_cols=14 Identities=36% Similarity=1.027 Sum_probs=10.1
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2eow_A 9 GEKPYKCNECGKAF 22 (46)
T ss_dssp CCCCEECTTSCCEE
T ss_pred CCCCeeccccCChh
Confidence 45678899988654
No 154
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.56 E-value=21 Score=18.12 Aligned_cols=14 Identities=21% Similarity=0.975 Sum_probs=10.4
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 8 ~~k~~~C~~C~k~f 21 (42)
T 2ytb_A 8 GEKPYRCDQCGKAF 21 (42)
T ss_dssp SCCSBCCTTTTCCB
T ss_pred CCCCeeCCCccchh
Confidence 45678899998654
No 155
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=31.51 E-value=22 Score=21.90 Aligned_cols=28 Identities=21% Similarity=0.557 Sum_probs=20.9
Q ss_pred eeeeccccccceeEeec-----C-----eeecCCCCCC
Q 032810 101 AQRRCEVCGGSGLVLRE-----K-----DYFKCPECGM 128 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~-----~-----~~~kC~~CGG 128 (133)
....|+.|+....+.-. . .+++|..||-
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~ 45 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGN 45 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCC
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCC
Confidence 45689999999887632 1 3689999984
No 156
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.45 E-value=21 Score=18.23 Aligned_cols=15 Identities=20% Similarity=0.711 Sum_probs=10.9
Q ss_pred cCeeecCCCCCCCcc
Q 032810 117 EKDYFKCPECGMSYG 131 (133)
Q Consensus 117 ~~~~~kC~~CGGFl~ 131 (133)
+..+++|+.||--+.
T Consensus 8 ~~k~~~C~~C~k~f~ 22 (42)
T 2eos_A 8 GEKPYPCEICGTRFR 22 (42)
T ss_dssp SSCCBCCSSSCCCBS
T ss_pred CCCCEECCCCCCccC
Confidence 456788999986553
No 157
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=31.45 E-value=25 Score=24.42 Aligned_cols=22 Identities=32% Similarity=0.998 Sum_probs=14.4
Q ss_pred eeeccccccceeEeecCeeecCCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
.|.|-.|+ +|..++ .||.||..
T Consensus 23 ~rAC~~C~---~v~~~d---~CPnCgs~ 44 (81)
T 3p8b_A 23 EKACRHCH---YITSED---RCPVCGSR 44 (81)
T ss_dssp CEEETTTC---BEESSS---SCTTTCCC
T ss_pred HHHHhhCC---CccCCC---CCCCCCCC
Confidence 35677774 565544 69999864
No 158
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=31.20 E-value=22 Score=23.94 Aligned_cols=22 Identities=27% Similarity=0.792 Sum_probs=14.7
Q ss_pred eeeccccccceeEeecCeeecCCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
.+.|-.|.- || ....||.||..
T Consensus 11 ~~AC~~C~~--~~----~~~~CPnC~s~ 32 (69)
T 1ryq_A 11 EKACRHCHY--IT----SEDRCPVCGSR 32 (69)
T ss_dssp CEEETTTCB--EE----SSSSCTTTCCC
T ss_pred hhhHHhCCc--cc----cCCcCCCccCC
Confidence 467777776 55 34478888753
No 159
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=31.19 E-value=23 Score=24.86 Aligned_cols=27 Identities=26% Similarity=0.645 Sum_probs=21.2
Q ss_pred eeeccccccceeEeecC----------eeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREK----------DYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~----------~~~kC~~CGG 128 (133)
+..|+.|+....+.-.. .+++|..||-
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~ 108 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSH 108 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCC
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCC
Confidence 67899999998886431 3689999984
No 160
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.44 E-value=18 Score=18.88 Aligned_cols=15 Identities=33% Similarity=0.862 Sum_probs=11.0
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~k~~~C~~C~k~f 22 (46)
T 2yts_A 8 TGEKPYICNECGKSF 22 (46)
T ss_dssp CSCCSEECSSSCCEE
T ss_pred CCCcCEECCCCChhh
Confidence 345678999998654
No 161
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.38 E-value=16 Score=19.25 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=9.6
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~k~~~C~~C~k~f 22 (46)
T 2eoh_A 8 SGKKPYECKECRKTF 22 (46)
T ss_dssp CCSCSCCCSSSCCCC
T ss_pred CCCCCcCCCCcCchh
Confidence 345567788887544
No 162
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.34 E-value=18 Score=18.56 Aligned_cols=14 Identities=21% Similarity=0.800 Sum_probs=10.6
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (44)
T 2eof_A 9 GEKPYECNECQKAF 22 (44)
T ss_dssp CCCSEECTTTCCEE
T ss_pred CCCCeECCCCCccc
Confidence 45678999998654
No 163
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.32 E-value=34 Score=20.37 Aligned_cols=28 Identities=29% Similarity=0.799 Sum_probs=16.5
Q ss_pred eeccccccc----e--eEeecCee----ecCCCCCCCc
Q 032810 103 RRCEVCGGS----G--LVLREKDY----FKCPECGMSY 130 (133)
Q Consensus 103 ~rCe~C~Gs----G--LV~r~~~~----~kC~~CGGFl 130 (133)
.+|..|+.. + +...++.+ |+|..|+--|
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L 43 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL 43 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBC
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcC
Confidence 568888742 2 22334433 7888887665
No 164
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=30.31 E-value=30 Score=23.39 Aligned_cols=45 Identities=24% Similarity=0.390 Sum_probs=28.0
Q ss_pred EEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 77 IIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 77 i~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
=++|-+.+ .|=.|+|+|+-+-. ... .|-| .+++||.|+ ..|-|.+
T Consensus 25 ryvG~~~~-~~G~wvGVelDep~------Gkn--dGsv-~G~rYF~c~~~~G~Fv~ 70 (84)
T 2cp3_A 25 RYVGETDF-AKGEWCGVELDEPL------GKN--DGAV-AGTRYFQCPPKFGLFAP 70 (84)
T ss_dssp EEEEECSS-SSSEEEEEEESSSC------CSB--SSEE-TTEESSCCCTTTEEEEE
T ss_pred EEeccCCC-CCCeEEEEEeCCCC------CcC--CCEE-CCEEeeecCCCeEEEEc
Confidence 35565543 45579999998641 222 3444 578899994 5666654
No 165
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=30.28 E-value=28 Score=22.50 Aligned_cols=20 Identities=30% Similarity=0.820 Sum_probs=11.0
Q ss_pred eeccccccceeEeecCeeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
|.|-.| ++|+.++ .||.||.
T Consensus 2 rAC~~C---~~v~~~~---~CpnC~~ 21 (59)
T 3lpe_B 2 RACLKC---KYLTNDE---ICPICHS 21 (59)
T ss_dssp EEETTT---CBEESSS---BCTTTCC
T ss_pred cccccC---CcccCCC---CCCCCCC
Confidence 345555 3565444 5777763
No 166
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=30.14 E-value=23 Score=19.76 Aligned_cols=10 Identities=30% Similarity=0.799 Sum_probs=5.6
Q ss_pred eeecCCCCCC
Q 032810 119 DYFKCPECGM 128 (133)
Q Consensus 119 ~~~kC~~CGG 128 (133)
.+++|+.||-
T Consensus 39 ~~~~C~~C~k 48 (66)
T 2drp_A 39 KVYPCPFCFK 48 (66)
T ss_dssp CCEECTTTCC
T ss_pred cCeECCCCCC
Confidence 3456666654
No 167
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=30.11 E-value=25 Score=24.26 Aligned_cols=7 Identities=43% Similarity=1.388 Sum_probs=3.2
Q ss_pred cCCCCCC
Q 032810 122 KCPECGM 128 (133)
Q Consensus 122 kC~~CGG 128 (133)
.||+||-
T Consensus 33 fCPeCgq 39 (81)
T 2jrp_A 33 LCPDCRQ 39 (81)
T ss_dssp ECSSSCS
T ss_pred cCcchhh
Confidence 3444443
No 168
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.28 E-value=11 Score=17.57 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=8.1
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
+++|+.||--+
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 2lvt_A 2 PCQCVMCGKAF 12 (29)
Confidence 56899998654
No 169
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.99 E-value=17 Score=19.00 Aligned_cols=15 Identities=33% Similarity=0.908 Sum_probs=11.2
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~k~~~C~~C~k~F 22 (46)
T 2enf_A 8 TGEKPYKCNECGKVF 22 (46)
T ss_dssp CCCCSCBCSSSCCBC
T ss_pred CCCcCeECCCCCccc
Confidence 345688999998654
No 170
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.78 E-value=15 Score=19.66 Aligned_cols=11 Identities=0% Similarity=-0.034 Sum_probs=7.8
Q ss_pred CeeecCCCCCC
Q 032810 118 KDYFKCPECGM 128 (133)
Q Consensus 118 ~~~~kC~~CGG 128 (133)
..+++|+.||.
T Consensus 38 ~k~~~C~~C~k 48 (48)
T 2epr_A 38 EKPYSSGPSSG 48 (48)
T ss_dssp CCCCCSCCCCC
T ss_pred CCCccCCCCCC
Confidence 45778888874
No 171
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=29.75 E-value=16 Score=19.99 Aligned_cols=14 Identities=29% Similarity=0.842 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|..||--+
T Consensus 4 ~~kp~~C~~C~k~F 17 (48)
T 3iuf_A 4 RDKPYACDICGKRY 17 (48)
T ss_dssp TTSCEECTTTCCEE
T ss_pred CCcCEECCCcCccc
Confidence 45678999998644
No 172
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.58 E-value=18 Score=18.79 Aligned_cols=14 Identities=29% Similarity=0.876 Sum_probs=10.6
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2ytf_A 9 GEKPFECSECQKAF 22 (46)
T ss_dssp CCCSEECSSSCCEE
T ss_pred CCCCcCCCCCCccc
Confidence 45678999998654
No 173
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=29.56 E-value=19 Score=27.06 Aligned_cols=29 Identities=17% Similarity=0.540 Sum_probs=21.9
Q ss_pred eeeeeccccccceeEeec----------CeeecCCCCCC
Q 032810 100 IAQRRCEVCGGSGLVLRE----------KDYFKCPECGM 128 (133)
Q Consensus 100 i~Q~rCe~C~GsGLV~r~----------~~~~kC~~CGG 128 (133)
-.+..|+.|++...+... ..++.|..||-
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~ 173 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGN 173 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCC
T ss_pred cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCC
Confidence 345689999999887632 24889999984
No 174
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=35.69 E-value=11 Score=17.39 Aligned_cols=12 Identities=17% Similarity=0.672 Sum_probs=8.6
Q ss_pred eecCCCCCCCcc
Q 032810 120 YFKCPECGMSYG 131 (133)
Q Consensus 120 ~~kC~~CGGFl~ 131 (133)
+++|..||--+.
T Consensus 3 ~~~C~~C~k~f~ 14 (30)
T 2lvr_A 3 PYVCIHCQRQFA 14 (30)
Confidence 578999986543
No 175
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.49 E-value=19 Score=18.70 Aligned_cols=15 Identities=27% Similarity=0.928 Sum_probs=10.9
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~~~~~C~~C~k~f 22 (46)
T 2yrj_A 8 TGEKPYRCGECGKAF 22 (46)
T ss_dssp CCCCCEECSSSCCEE
T ss_pred CCCCCeECCCCCCcc
Confidence 345678999998654
No 176
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.45 E-value=19 Score=18.86 Aligned_cols=14 Identities=29% Similarity=1.037 Sum_probs=10.6
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2yto_A 9 GEKPYKCSDCGKAF 22 (46)
T ss_dssp SCCCEECSSSCCEE
T ss_pred CCCCEECcccCCcc
Confidence 45688999998654
No 177
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.35 E-value=19 Score=18.85 Aligned_cols=14 Identities=43% Similarity=1.170 Sum_probs=10.6
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2en3_A 9 GEKPFQCKECGMNF 22 (46)
T ss_dssp CCCSEECSSSCCEE
T ss_pred CCCCeeCcccChhh
Confidence 45678999998654
No 178
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=29.27 E-value=15 Score=25.62 Aligned_cols=16 Identities=38% Similarity=0.947 Sum_probs=10.3
Q ss_pred eEeecCeee---cCCCCCC
Q 032810 113 LVLREKDYF---KCPECGM 128 (133)
Q Consensus 113 LV~r~~~~~---kC~~CGG 128 (133)
||...+.+| |||+|+.
T Consensus 22 Lv~~PnS~Fm~VkCp~C~n 40 (81)
T 2xzm_6 22 LIQAPNSYFMDVKCAQCQN 40 (81)
T ss_dssp SSCCCSCCEEEEECSSSCC
T ss_pred eeeCCCCcEEEeECCCCCC
Confidence 455555555 8888874
No 179
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.13 E-value=21 Score=18.61 Aligned_cols=15 Identities=27% Similarity=0.879 Sum_probs=10.8
Q ss_pred cCeeecCCCCCCCcc
Q 032810 117 EKDYFKCPECGMSYG 131 (133)
Q Consensus 117 ~~~~~kC~~CGGFl~ 131 (133)
+..+++|+.||--+.
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2eq2_A 9 GGKPYQCNECGKAFS 23 (46)
T ss_dssp SSCSSSCCSSCCCCS
T ss_pred CCCCeECCCCCcccC
Confidence 456788999986543
No 180
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=29.09 E-value=30 Score=25.21 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=28.1
Q ss_pred EEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 76 QIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 76 qi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
-=+||-+.+ .|=.|+|+|+-+-. ... .|-| .+++||.|+ .+|-|.+
T Consensus 48 VRyvG~v~~-~~G~WvGVELDeP~------GKn--DGsv-~G~rYF~C~p~~GiFVr 94 (122)
T 2coz_A 48 LRFKGETSF-AKGFWAGVELDKPE------GNN--NGTY-DGIAYFECKEKHGIFAP 94 (122)
T ss_dssp EEEEEECSS-SSSEEEEEEESSTT------SSB--CSEE-TTEECCCCCSSCEEEEC
T ss_pred EEEecccCC-CCCeEEEEEeCCCC------Ccc--CCEE-CCEEeeecCCCcEEEec
Confidence 345665543 45689999997631 222 3444 578899994 4666654
No 181
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=29.02 E-value=30 Score=24.35 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=26.7
Q ss_pred EEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 78 IVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 78 ~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
+||-+. ..|=.|+|+|+-+-. ... .|-| .+++||.| +..|-|.+
T Consensus 42 yvG~~~-~~~G~wvGVElDep~------GKn--DGsv-~G~rYF~C~p~~GiFvr 86 (100)
T 2cow_A 42 YVGPAD-FQEGTWVGVELDLPS------GKN--DGSI-GGKQYFRCNPGYGLLVR 86 (100)
T ss_dssp EEECCS-SSSSCEEEEECSSSC------CSC--SSEE-TTEECCCSCTTCCEEEC
T ss_pred EeeeCC-CCCCeEEEEEeCCCC------CcC--CCEE-CCEEeeecCCCeEEEec
Confidence 455544 345579999998641 222 3433 57789999 45566654
No 182
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.00 E-value=20 Score=18.85 Aligned_cols=14 Identities=29% Similarity=1.013 Sum_probs=10.2
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2ytp_A 9 GERHYECSECGKAF 22 (46)
T ss_dssp CCCCEECSSSCCEE
T ss_pred CCCCeECCcCCccc
Confidence 45678899998654
No 183
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.91 E-value=21 Score=18.27 Aligned_cols=15 Identities=27% Similarity=0.771 Sum_probs=10.6
Q ss_pred cCeeecCCCCCCCcc
Q 032810 117 EKDYFKCPECGMSYG 131 (133)
Q Consensus 117 ~~~~~kC~~CGGFl~ 131 (133)
+..+++|+.||--+.
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (44)
T 2en7_A 9 GMKPYVCNECGKAFR 23 (44)
T ss_dssp SSSSSCCTTTCCCCS
T ss_pred CCcCeECCCCCCccC
Confidence 456788999986543
No 184
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.83 E-value=17 Score=26.49 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=15.9
Q ss_pred eeeeccccccceeEeecCeeecCCCCCC
Q 032810 101 AQRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
-+..|+.|+-. |...++ ++-|..|..
T Consensus 31 M~~~CP~Cq~e-L~~~g~-~~hC~~C~~ 56 (101)
T 2jne_A 31 MELHCPQCQHV-LDQDNG-HARCRSCGE 56 (101)
T ss_dssp CCCBCSSSCSB-EEEETT-EEEETTTCC
T ss_pred ccccCccCCCc-ceecCC-EEECccccc
Confidence 44778888876 655555 334555544
No 185
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.58 E-value=15 Score=18.99 Aligned_cols=15 Identities=27% Similarity=0.853 Sum_probs=10.8
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~k~~~C~~C~k~f 22 (44)
T 2eoj_A 8 TGENPYECCECGKVF 22 (44)
T ss_dssp SSCCSCEETTTTEEC
T ss_pred CCCcCeeCCCCCCcc
Confidence 345678999998544
No 186
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.50 E-value=20 Score=18.70 Aligned_cols=14 Identities=29% Similarity=1.013 Sum_probs=10.0
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~~~~~C~~C~k~F 22 (46)
T 2emi_A 9 GERHYECSECGKAF 22 (46)
T ss_dssp SCCCEECSSSCCEE
T ss_pred CCCCCCCCCCCccc
Confidence 45678888888644
No 187
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.45 E-value=24 Score=18.51 Aligned_cols=14 Identities=29% Similarity=0.942 Sum_probs=10.3
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2em6_A 9 GEKCYKCDVCGKEF 22 (46)
T ss_dssp CCCCCBCSSSCCBC
T ss_pred CCCCeECCCCCccc
Confidence 45678899998654
No 188
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=28.36 E-value=21 Score=19.63 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 21 ~~k~~~C~~C~k~f 34 (54)
T 1yui_A 21 SEQPATCPICYAVI 34 (54)
T ss_dssp SSCCEECTTTCCEE
T ss_pred CCCCccCCCCCccc
Confidence 45678999998644
No 189
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.25 E-value=21 Score=18.70 Aligned_cols=15 Identities=33% Similarity=0.944 Sum_probs=10.9
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~k~~~C~~C~k~F 22 (46)
T 2emf_A 8 TGGKHFECTECGKAF 22 (46)
T ss_dssp SSSCCEECSSSCCEE
T ss_pred CCCCCeECCCCCchh
Confidence 345678999998654
No 190
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.22 E-value=20 Score=18.72 Aligned_cols=14 Identities=29% Similarity=1.044 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2ep3_A 9 GEKPYRCAECGKAF 22 (46)
T ss_dssp CCCSEECSSSCCEE
T ss_pred CCCCeECCCCCchh
Confidence 45678999998654
No 191
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.19 E-value=17 Score=18.78 Aligned_cols=15 Identities=27% Similarity=0.981 Sum_probs=10.8
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~~~~~C~~C~k~F 22 (44)
T 2eox_A 8 TDSKSYNCNECGKAF 22 (44)
T ss_dssp CCCCCEEETTTTEEE
T ss_pred CCCCCeECcccCccc
Confidence 345678999998644
No 192
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=28.19 E-value=34 Score=23.51 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=26.2
Q ss_pred EEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 78 IVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 78 ~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
++|-+.+ .|=.|+|+|+-+-. . +-.|-| .+++||.| +.+|-|.+
T Consensus 32 yvG~v~~-~~G~wvGVElDep~------G--KnDGsv-~G~rYF~C~~~~G~Fvr 76 (91)
T 1whk_A 32 YVGPTDF-ASGIWLGLELRSAK------G--KNDGAV-GDKRYFTCKPNYGVLVR 76 (91)
T ss_dssp CCEECSS-SSSEEEEEECSSSC------S--SCCSEE-TTEECCCCSTTCCCEEC
T ss_pred EeeeCCC-CCCeEEEEEeCCCC------C--cCCCEE-CCEEEeecCCCeEEEEc
Confidence 3454442 35589999998631 1 123433 47789999 55666654
No 193
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.15 E-value=25 Score=18.33 Aligned_cols=15 Identities=27% Similarity=0.707 Sum_probs=11.0
Q ss_pred cCeeecCCCCCCCcc
Q 032810 117 EKDYFKCPECGMSYG 131 (133)
Q Consensus 117 ~~~~~kC~~CGGFl~ 131 (133)
+..+++|..||--+.
T Consensus 7 ~~k~~~C~~C~k~f~ 21 (43)
T 2yrm_A 7 GNGAFFCNECDCRFS 21 (43)
T ss_dssp SSCCBCCSSSCCCBS
T ss_pred CCCCEECCCCCCeeC
Confidence 456789999987553
No 194
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.02 E-value=23 Score=18.56 Aligned_cols=16 Identities=44% Similarity=1.041 Sum_probs=11.3
Q ss_pred ecCeeecCCCCCCCcc
Q 032810 116 REKDYFKCPECGMSYG 131 (133)
Q Consensus 116 r~~~~~kC~~CGGFl~ 131 (133)
.+..+++|+.||--+.
T Consensus 8 ~~~k~~~C~~C~k~f~ 23 (46)
T 2emz_A 8 SGERPFKCNECGKGFG 23 (46)
T ss_dssp SCCCSCCCSSSCCCCS
T ss_pred CCCCCeECCCCCcccC
Confidence 3456788999986553
No 195
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=27.97 E-value=21 Score=18.75 Aligned_cols=14 Identities=43% Similarity=1.080 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2emj_A 9 GEKPFECAECGKSF 22 (46)
T ss_dssp CCCSEECSSSSCEE
T ss_pred CCCCEECCCCCccc
Confidence 45678999998654
No 196
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.94 E-value=22 Score=18.57 Aligned_cols=14 Identities=36% Similarity=0.973 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2eq0_A 9 GEKPYKCHECGKVF 22 (46)
T ss_dssp CCCCEECTTTCCEE
T ss_pred CCCCeECCCCCchh
Confidence 45678999998654
No 197
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.93 E-value=20 Score=18.83 Aligned_cols=15 Identities=27% Similarity=0.862 Sum_probs=10.7
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~k~~~C~~C~k~f 22 (46)
T 2em4_A 8 TGQRPYECIECGKAF 22 (46)
T ss_dssp CCSSSEECSSSCCEE
T ss_pred CCCcCcCCCCCCCcc
Confidence 345678899998654
No 198
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.81 E-value=25 Score=22.64 Aligned_cols=20 Identities=30% Similarity=0.906 Sum_probs=13.7
Q ss_pred eeeccccccceeEeecCeeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
...|++|+- ....+||.|+-
T Consensus 12 ~~~C~vC~~-------~~kY~CPrC~~ 31 (56)
T 2yqq_A 12 TVVCVICLE-------KPKYRCPACRV 31 (56)
T ss_dssp CCCCTTTCS-------CCSEECTTTCC
T ss_pred CCccCcCcC-------CCeeeCCCCCC
Confidence 346999974 22349999973
No 199
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=27.79 E-value=18 Score=26.10 Aligned_cols=10 Identities=60% Similarity=1.261 Sum_probs=8.7
Q ss_pred eeecCCCCCC
Q 032810 119 DYFKCPECGM 128 (133)
Q Consensus 119 ~~~kC~~CGG 128 (133)
..||||.||-
T Consensus 50 F~FkCP~CgE 59 (95)
T 2k5c_A 50 FVFKCPVCGE 59 (95)
T ss_dssp SEEECTTTCC
T ss_pred HhhcCCCccH
Confidence 5899999985
No 200
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=27.52 E-value=26 Score=24.29 Aligned_cols=25 Identities=36% Similarity=0.922 Sum_probs=16.6
Q ss_pred eeeeccccccceeEeecC------------------eeecCCCCCC
Q 032810 101 AQRRCEVCGGSGLVLREK------------------DYFKCPECGM 128 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~~------------------~~~kC~~CGG 128 (133)
..-+|.+|| .|..+. ...+||.||-
T Consensus 34 ~~y~C~vCG---yvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 34 LKWICITCG---HIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CEEEETTTT---EEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred ceEECCCCC---eEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 457888885 666531 1348999984
No 201
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.48 E-value=22 Score=18.65 Aligned_cols=16 Identities=25% Similarity=0.879 Sum_probs=11.1
Q ss_pred ecCeeecCCCCCCCcc
Q 032810 116 REKDYFKCPECGMSYG 131 (133)
Q Consensus 116 r~~~~~kC~~CGGFl~ 131 (133)
.+..+++|+.||--+.
T Consensus 8 ~~~k~~~C~~C~k~f~ 23 (46)
T 2eoy_A 8 QKEKCFKCNKCEKTFS 23 (46)
T ss_dssp CCSCCEECSSSCCEES
T ss_pred CCCCCEECcCCCCcCC
Confidence 3456788999986543
No 202
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=27.44 E-value=26 Score=22.05 Aligned_cols=8 Identities=50% Similarity=1.805 Sum_probs=6.4
Q ss_pred ecCCCCCC
Q 032810 121 FKCPECGM 128 (133)
Q Consensus 121 ~kC~~CGG 128 (133)
.+||.||-
T Consensus 37 w~CP~Cga 44 (55)
T 2v3b_B 37 WVCPDCGV 44 (55)
T ss_dssp CCCTTTCC
T ss_pred CcCCCCCC
Confidence 48999984
No 203
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=27.39 E-value=18 Score=22.39 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=19.1
Q ss_pred eeccccccceeEeecCe--------eecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKD--------YFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~--------~~kC~~CGG 128 (133)
..|-.|+..|=+.++=. ..+|+.||.
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~ 38 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNG 38 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCC
T ss_pred CcccccCCCCeehhhCcCCcCCCCCCCeeCCCCC
Confidence 45888998888887621 367999985
No 204
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.25 E-value=19 Score=18.80 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=5.4
Q ss_pred CeeecCCCCCC
Q 032810 118 KDYFKCPECGM 128 (133)
Q Consensus 118 ~~~~kC~~CGG 128 (133)
..+++|+.||-
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2en6_A 10 EKPYGCNECGK 20 (46)
T ss_dssp SCCEEETTTTE
T ss_pred CcCeECCCCCc
Confidence 34455555553
No 205
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.24 E-value=18 Score=19.02 Aligned_cols=14 Identities=21% Similarity=0.823 Sum_probs=10.4
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2eoz_A 9 GEKPYSCNVCGKAF 22 (46)
T ss_dssp SCCSEEETTTTEEE
T ss_pred CCCCeECcccChhh
Confidence 45678999998644
No 206
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.24 E-value=22 Score=18.34 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=9.4
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|..||--+
T Consensus 7 ~~k~~~C~~C~k~f 20 (44)
T 2emx_A 7 GEKPFGCSCCEKAF 20 (44)
T ss_dssp SCCCEECSSSSCEE
T ss_pred CCcCccCCCCCccc
Confidence 44567888887544
No 207
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.21 E-value=22 Score=18.59 Aligned_cols=14 Identities=14% Similarity=0.709 Sum_probs=10.6
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|..||--+
T Consensus 9 ~~~~~~C~~C~k~F 22 (46)
T 2em3_A 9 GEKPYECKVCSKAF 22 (46)
T ss_dssp SCCSEECSSSCCEE
T ss_pred CCcCeECCCCCccc
Confidence 45678999998654
No 208
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.20 E-value=21 Score=18.62 Aligned_cols=14 Identities=36% Similarity=0.978 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2ene_A 9 GEKPYKCNECGKVF 22 (46)
T ss_dssp CSSSEECSSSCCEE
T ss_pred CCCCeECCCCCchh
Confidence 45678999998654
No 209
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.19 E-value=25 Score=18.31 Aligned_cols=15 Identities=33% Similarity=0.899 Sum_probs=10.7
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~k~~~C~~C~k~f 22 (46)
T 2emg_A 8 TGENPFICSECGKVF 22 (46)
T ss_dssp CSCCSCBCTTTCCBC
T ss_pred CCCCCEECCccCccc
Confidence 345678899998654
No 210
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.05 E-value=26 Score=18.33 Aligned_cols=15 Identities=33% Similarity=0.919 Sum_probs=10.8
Q ss_pred cCeeecCCCCCCCcc
Q 032810 117 EKDYFKCPECGMSYG 131 (133)
Q Consensus 117 ~~~~~kC~~CGGFl~ 131 (133)
+..+++|+.||--+.
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2yth_A 9 GEKPFQCEECGKRFT 23 (46)
T ss_dssp CSSSBCCSSSCCCBS
T ss_pred CCcCCCCCCCCcccC
Confidence 456788999986543
No 211
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=27.00 E-value=22 Score=27.11 Aligned_cols=27 Identities=26% Similarity=0.679 Sum_probs=21.5
Q ss_pred eeeccccccceeEeecCeeecCCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
--.|+.|+ |-.++.+...+-||+|+.-
T Consensus 27 lP~CP~C~-seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 27 LPPCPQCN-SEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp SCCCTTTC-CCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCC-CcceEecCCeEECCccccc
Confidence 36799997 4577778888999999863
No 212
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=26.99 E-value=25 Score=23.21 Aligned_cols=8 Identities=50% Similarity=1.406 Sum_probs=6.4
Q ss_pred ecCCCCCC
Q 032810 121 FKCPECGM 128 (133)
Q Consensus 121 ~kC~~CGG 128 (133)
.+||.||-
T Consensus 41 w~CP~Cga 48 (70)
T 1dx8_A 41 FMCPACRS 48 (70)
T ss_dssp CBCTTTCC
T ss_pred CcCCCCCC
Confidence 48999984
No 213
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=26.93 E-value=23 Score=18.48 Aligned_cols=14 Identities=36% Similarity=1.009 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2ema_A 9 GEKRYKCNECGKVF 22 (46)
T ss_dssp TSCCEECSSSCCEE
T ss_pred CCcCcCCCCCcchh
Confidence 45678999998654
No 214
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.86 E-value=25 Score=18.30 Aligned_cols=14 Identities=43% Similarity=0.954 Sum_probs=9.8
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~~~~~C~~C~k~f 22 (46)
T 2eoq_A 9 GEKPFKCDICGKSF 22 (46)
T ss_dssp SSCSCCCSSSCCCC
T ss_pred CCCCcCCCcCCchh
Confidence 45678888888654
No 215
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.76 E-value=23 Score=18.47 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=9.0
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|..||--+
T Consensus 9 ~~~~~~C~~C~k~f 22 (46)
T 2yso_A 9 REKSHQCRECGEIF 22 (46)
T ss_dssp CCCCEECTTTCCEE
T ss_pred CCCCEEccccChhh
Confidence 34567788887544
No 216
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=26.70 E-value=22 Score=17.58 Aligned_cols=11 Identities=45% Similarity=1.228 Sum_probs=8.0
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
+++|+.||--+
T Consensus 2 p~~C~~C~k~F 12 (33)
T 1rim_A 2 KFACPECPKRF 12 (33)
T ss_dssp CCCCSSSCCCC
T ss_pred cccCCCCCchh
Confidence 46788888654
No 217
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.65 E-value=23 Score=18.41 Aligned_cols=14 Identities=29% Similarity=0.980 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|..||--+
T Consensus 9 ~~~~~~C~~C~k~f 22 (46)
T 2eor_A 9 GEKPYNCEECGKAF 22 (46)
T ss_dssp CCCSEECTTTCCEE
T ss_pred CCcCccCCCCCCCc
Confidence 45678999998654
No 218
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.61 E-value=19 Score=18.84 Aligned_cols=9 Identities=44% Similarity=1.331 Sum_probs=4.0
Q ss_pred eeecCCCCC
Q 032810 119 DYFKCPECG 127 (133)
Q Consensus 119 ~~~kC~~CG 127 (133)
.+++|+.||
T Consensus 11 k~~~C~~C~ 19 (46)
T 2ysp_A 11 KPYKCEKCG 19 (46)
T ss_dssp CSEEETTTT
T ss_pred CCeECCCCC
Confidence 344444444
No 219
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=26.61 E-value=24 Score=21.21 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=9.9
Q ss_pred CeeecCCCCCCCcc
Q 032810 118 KDYFKCPECGMSYG 131 (133)
Q Consensus 118 ~~~~kC~~CGGFl~ 131 (133)
...++|+.||-.+|
T Consensus 7 ~~~~~C~~C~~~i~ 20 (39)
T 2i5o_A 7 EDQVPCEKCGSLVP 20 (39)
T ss_dssp CCEEECTTTCCEEE
T ss_pred CCCcccccccCcCC
Confidence 34567888887765
No 220
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=26.55 E-value=22 Score=18.43 Aligned_cols=15 Identities=33% Similarity=0.933 Sum_probs=10.9
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~k~~~C~~C~k~f 22 (46)
T 2em9_A 8 TGEKPYNCKECGKSF 22 (46)
T ss_dssp CCCCSEECSSSCCEE
T ss_pred CCCcCeECCcccccc
Confidence 345678999998654
No 221
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.52 E-value=26 Score=23.91 Aligned_cols=25 Identities=24% Similarity=0.626 Sum_probs=19.8
Q ss_pred eeeeccc--cccceeEeecCeeecCCCCCCCc
Q 032810 101 AQRRCEV--CGGSGLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~--C~GsGLV~r~~~~~kC~~CGGFl 130 (133)
...+|.. |+-.+| ..|+|..||+-+
T Consensus 24 ~~~~C~~~~Ck~~~~-----l~f~C~~C~~~F 50 (86)
T 1wfe_A 24 KSYSCSFKGCTDVEL-----VAVICPYCEKNF 50 (86)
T ss_dssp CCEECCSTTCCCEES-----SCEECTTTCCEE
T ss_pred CCCCCCCcCCCCCCc-----cceECCCCCccc
Confidence 3468998 998866 478999999854
No 222
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=26.43 E-value=26 Score=18.33 Aligned_cols=14 Identities=29% Similarity=0.987 Sum_probs=9.9
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2emk_A 9 GEKPYECKECGKAF 22 (46)
T ss_dssp SSCSCBCSSSCCBC
T ss_pred CCCceECCCCCchh
Confidence 45678888888654
No 223
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.38 E-value=22 Score=18.54 Aligned_cols=15 Identities=33% Similarity=0.908 Sum_probs=10.9
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~k~~~C~~C~k~f 22 (46)
T 2yu8_A 8 TGEKPYKCNECGKVF 22 (46)
T ss_dssp CCCSSEECSSSCCEE
T ss_pred CCCCCeECCcCCchh
Confidence 345678999998654
No 224
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=26.36 E-value=27 Score=18.19 Aligned_cols=14 Identities=36% Similarity=0.978 Sum_probs=9.8
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2em0_A 9 GEKTWKCRECDMCF 22 (46)
T ss_dssp CCCCCCCSSSCCCC
T ss_pred CCcCeECCCCCccc
Confidence 45678888887654
No 225
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=26.35 E-value=31 Score=24.71 Aligned_cols=27 Identities=26% Similarity=0.707 Sum_probs=16.2
Q ss_pred eeeeeeeccccccceeEeecCeeecCCCCCCC
Q 032810 98 RIIAQRRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 98 RIi~Q~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
|++.| ||..|+ -+.--... -||.||+.
T Consensus 44 rL~~~-rC~~CG---~~~~PPr~-~Cp~C~s~ 70 (145)
T 3irb_A 44 KIIGS-KCSKCG---RIFVPARS-YCEHCFVK 70 (145)
T ss_dssp CCEEE-ECTTTC---CEEESCCS-EETTTTEE
T ss_pred eEEEE-EeCCCC---cEEcCchh-hCcCCCCC
Confidence 55555 587774 34433332 39999874
No 226
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.28 E-value=23 Score=18.40 Aligned_cols=14 Identities=21% Similarity=0.766 Sum_probs=10.1
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2eme_A 9 GEKPYVCDYCGKAF 22 (46)
T ss_dssp CCCSEECSSSCCEE
T ss_pred CCCCeECCCCChhh
Confidence 45678899998644
No 227
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.27 E-value=25 Score=18.25 Aligned_cols=14 Identities=29% Similarity=1.016 Sum_probs=10.3
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|..||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2ep1_A 9 GEKPYECSDCGKSF 22 (46)
T ss_dssp SCCSSCCSSSCCCC
T ss_pred CCCCcCCCCCCchh
Confidence 45678899998654
No 228
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.13 E-value=27 Score=18.10 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=9.6
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~~~~~C~~C~k~f 22 (46)
T 2eop_A 9 GEKPHECRECGKSF 22 (46)
T ss_dssp CCCSCBCTTTCCBC
T ss_pred CCCCeeCCCCCchh
Confidence 45577888887654
No 229
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.89 E-value=23 Score=18.39 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=9.2
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2epw_A 9 GEKPCKCTECGKAF 22 (46)
T ss_dssp CCCSEECSSSCCEE
T ss_pred CCCCeeCCCCCCcc
Confidence 34567788887544
No 230
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=25.88 E-value=23 Score=18.36 Aligned_cols=14 Identities=14% Similarity=0.707 Sum_probs=9.2
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2el4_A 9 GVKPYGCSQCAKTF 22 (46)
T ss_dssp CCCSEECSSSSCEE
T ss_pred CCCceECCCCCchh
Confidence 34567888887544
No 231
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=25.85 E-value=50 Score=22.61 Aligned_cols=51 Identities=27% Similarity=0.447 Sum_probs=34.5
Q ss_pred ceeeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 72 EVTWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 72 e~~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
....--++|-+.+..|=.|+|+|+-.- .=+..|-| .++.||.|+ .+|-|.+
T Consensus 19 ~~G~VryvG~v~~~~~G~wvGVelDep--------~GkndGsv-~G~rYF~C~~~~G~Fvr 70 (84)
T 4b6m_A 19 RLGSVRFVGRVASLKPGYWVGVEFDEP--------VGKGDGTV-KGTRVFQCQPNYGGFLR 70 (84)
T ss_dssp EEEEEEEEEECTTSCSSEEEEEEESSS--------CCSBSSEE-TTEESSCCCTTSEEEEC
T ss_pred eEEEEEEEecCCCCCCCEEEEEEECCC--------CCCcCCEE-CCEEEEecCCCeEEEec
Confidence 346667888888888889999999642 11235555 567899996 4555543
No 232
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=25.79 E-value=24 Score=20.18 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=8.1
Q ss_pred CeeecCCCCCCC
Q 032810 118 KDYFKCPECGMS 129 (133)
Q Consensus 118 ~~~~kC~~CGGF 129 (133)
...++|+.||..
T Consensus 4 ~~fY~C~~CGni 15 (36)
T 1dxg_A 4 GDVYKCELCGQV 15 (36)
T ss_dssp TCEEECTTTCCE
T ss_pred ccEEEcCCCCcE
Confidence 456778888654
No 233
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.68 E-value=24 Score=18.50 Aligned_cols=15 Identities=40% Similarity=1.003 Sum_probs=11.1
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~k~~~C~~C~k~f 22 (46)
T 2em2_A 8 SGEKPFKCKECGKAF 22 (46)
T ss_dssp CCCCSEECSSSCCEE
T ss_pred CCCCCEECCcCCchh
Confidence 355678999998654
No 234
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.59 E-value=22 Score=18.44 Aligned_cols=14 Identities=36% Similarity=1.077 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2eq4_A 9 GEKLYNCKECGKSF 22 (46)
T ss_dssp CCCCCCBTTTTBCC
T ss_pred CCCCeECCCCCCcc
Confidence 45678999998654
No 235
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.58 E-value=24 Score=18.39 Aligned_cols=14 Identities=21% Similarity=0.880 Sum_probs=10.4
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2eml_A 9 GEKPYECSVCGKAF 22 (46)
T ss_dssp SCCSEECSSSCCEE
T ss_pred CCCCeeCCCcCCcc
Confidence 45678899998654
No 236
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.56 E-value=23 Score=18.36 Aligned_cols=14 Identities=29% Similarity=0.859 Sum_probs=9.4
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~~~~~C~~C~k~f 22 (46)
T 2en8_A 9 GEKSHTCDECGKNF 22 (46)
T ss_dssp CCSSEECTTTCCEE
T ss_pred CCCCeECCCcCccc
Confidence 45567888887544
No 237
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.53 E-value=25 Score=18.35 Aligned_cols=15 Identities=53% Similarity=1.065 Sum_probs=10.9
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 8 ~~~~~~~C~~C~k~f 22 (46)
T 2ytg_A 8 TGEKPFKCGECGKSY 22 (46)
T ss_dssp SSCCSEECTTTCCEE
T ss_pred CCCCCeECCCCCccc
Confidence 345678999998654
No 238
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.50 E-value=27 Score=18.16 Aligned_cols=14 Identities=43% Similarity=1.025 Sum_probs=9.8
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2ytn_A 9 GKKPYKCNECGKVF 22 (46)
T ss_dssp CCSSCBCTTTCCBC
T ss_pred CCcCeECCCCCCee
Confidence 45678888888654
No 239
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.43 E-value=25 Score=18.42 Aligned_cols=14 Identities=29% Similarity=0.902 Sum_probs=9.6
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2eoo_A 9 GERPYGCNECGKNF 22 (46)
T ss_dssp CCCCEECSSSCCEE
T ss_pred CCCCEEccccCccc
Confidence 45677888888644
No 240
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.40 E-value=18 Score=24.77 Aligned_cols=24 Identities=38% Similarity=1.017 Sum_probs=17.4
Q ss_pred eeeeccccccc-eeEeecCeeecCCCCCCCc
Q 032810 101 AQRRCEVCGGS-GLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~C~Gs-GLV~r~~~~~kC~~CGGFl 130 (133)
...||..|+-. ||. .|+| .||+-|
T Consensus 24 ~~~RC~~C~kkvgL~-----~f~C-rCg~~F 48 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT-----GFKC-RCGSTF 48 (74)
T ss_dssp CCCBCSSSCCBCTTT-----CEEC-TTSCEE
T ss_pred cCccchhhcCccccc-----ceEe-ccCCEe
Confidence 45799999844 554 5899 699854
No 241
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.35 E-value=23 Score=18.47 Aligned_cols=14 Identities=36% Similarity=0.978 Sum_probs=10.3
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2yti_A 9 GEKPYKCNECGKVF 22 (46)
T ss_dssp CCCTTCCSSSCCCC
T ss_pred CCcCeECCCCCccc
Confidence 45678899998654
No 242
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.27 E-value=24 Score=18.36 Aligned_cols=14 Identities=29% Similarity=0.887 Sum_probs=10.3
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2ep2_A 9 GEKPYECSICGKSF 22 (46)
T ss_dssp CCCSEECSSSCCEE
T ss_pred CCcCcCCCCCCccc
Confidence 45678899998644
No 243
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=25.26 E-value=21 Score=27.85 Aligned_cols=11 Identities=36% Similarity=0.915 Sum_probs=9.2
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
.-+||.|||.|
T Consensus 163 ~P~C~~Cgg~l 173 (289)
T 1q1a_A 163 FVKCDVCGELV 173 (289)
T ss_dssp CCBCTTTCCBE
T ss_pred CccCCCCCCEE
Confidence 46999999965
No 244
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.21 E-value=28 Score=18.02 Aligned_cols=14 Identities=36% Similarity=1.063 Sum_probs=9.6
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~~~~~C~~C~k~f 22 (46)
T 2eov_A 9 GEKPYKCSDCGKSF 22 (46)
T ss_dssp SCCSCBCSSSCCBC
T ss_pred CCCCccCCccChhh
Confidence 34577888888544
No 245
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.12 E-value=25 Score=18.35 Aligned_cols=14 Identities=36% Similarity=0.978 Sum_probs=9.4
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~~~~~C~~C~k~f 22 (46)
T 2ytk_A 9 GEKPYKCNECGKVF 22 (46)
T ss_dssp SSCSEECSSSCCEE
T ss_pred CCCCEeCCcCCCcc
Confidence 45667888887544
No 246
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.07 E-value=26 Score=18.26 Aligned_cols=14 Identities=29% Similarity=1.016 Sum_probs=9.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2emy_A 9 GENPYECHECGKAF 22 (46)
T ss_dssp SSCCEECSSSCCEE
T ss_pred CCcCcCCCCCCccc
Confidence 45677888887544
No 247
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.90 E-value=31 Score=17.87 Aligned_cols=16 Identities=31% Similarity=0.766 Sum_probs=11.1
Q ss_pred ecCeeecCCCCCCCcc
Q 032810 116 REKDYFKCPECGMSYG 131 (133)
Q Consensus 116 r~~~~~kC~~CGGFl~ 131 (133)
.+..+++|+.||--+.
T Consensus 8 ~~~k~~~C~~C~k~F~ 23 (47)
T 2epx_A 8 TGKKPYECIECGKAFI 23 (47)
T ss_dssp CCCCSBCCSSSCCCBS
T ss_pred CCCCCEECCccCchhC
Confidence 3456788999986553
No 248
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.72 E-value=18 Score=18.81 Aligned_cols=14 Identities=21% Similarity=0.935 Sum_probs=10.2
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2eq3_A 9 GEKPYECNQCGKAF 22 (46)
T ss_dssp CCCSSEETTTTEEC
T ss_pred CCCCeECCCCChhh
Confidence 45678899998544
No 249
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=24.34 E-value=37 Score=22.31 Aligned_cols=48 Identities=25% Similarity=0.312 Sum_probs=29.1
Q ss_pred eeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 74 TWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 74 ~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
..-=++|.+.+ .|=.|+|+|+-+-. ... .|-| .+..||.|+ ..|-|.+
T Consensus 17 G~VryvG~~~~-~~g~w~GVeld~p~------Gkn--dGsv-~G~rYF~c~p~~G~Fv~ 65 (72)
T 3rdv_A 17 GFIQFLGETQF-APGQWAGIVLDEPI------GKN--DGSV-AGVRYFQCEPLKGIFTR 65 (72)
T ss_dssp EEEEEEECCSS-SSSCEEEEEESSSC------SSB--SSEE-TTEESCCCSTTCEEEEC
T ss_pred EEEEEeeeCCC-CCceEEEEEECCCC------Ccc--CCEE-CCEEeCccCCCCEEEec
Confidence 34445666654 46689999997631 223 3333 577899995 4555543
No 250
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=24.25 E-value=38 Score=25.58 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=11.1
Q ss_pred eeeeccccccceeEeec-----CeeecCCCCCCCc
Q 032810 101 AQRRCEVCGGSGLVLRE-----KDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~-----~~~~kC~~CGGFl 130 (133)
..-+|..|+- ....+ ...-+|+.|||.|
T Consensus 112 ~~~~C~~C~~--~~~~~~~~~~~~~p~c~~Cgg~l 144 (235)
T 1s5p_A 112 LKVRCSQSGQ--VLDWTGDVTPEDKCHCCQFPAPL 144 (235)
T ss_dssp EEEEETTTCC--EEECCSCCCSSCCC-------CE
T ss_pred eEEEeCCCCC--cccchhhccCCCCCCCCCCCCee
Confidence 3567999965 22221 2245788999965
No 251
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=24.16 E-value=45 Score=25.95 Aligned_cols=30 Identities=23% Similarity=0.687 Sum_probs=24.7
Q ss_pred eeeeeeeccccccceeEeecC--eeecCCCCC
Q 032810 98 RIIAQRRCEVCGGSGLVLREK--DYFKCPECG 127 (133)
Q Consensus 98 RIi~Q~rCe~C~GsGLV~r~~--~~~kC~~CG 127 (133)
-.+...+|..|+|.=++..+. ..+.||-|.
T Consensus 130 ~~L~l~~C~~Cgg~fv~~~~~~~~~f~Cp~C~ 161 (192)
T 2avu_E 130 GLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 (192)
T ss_dssp TSEEEEECTTTCCEEEEESSCCSSCCCCTTC-
T ss_pred CceeeCcCCCCCCCeeCccCCCCCCCcCCCCC
Confidence 567889999999998888775 489999996
No 252
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.14 E-value=26 Score=18.22 Aligned_cols=14 Identities=21% Similarity=0.776 Sum_probs=9.4
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2emh_A 9 GERPYICTVCGKAF 22 (46)
T ss_dssp CCCSEECTTTCCEE
T ss_pred CCCCcCCCCCCchh
Confidence 44567888887544
No 253
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.04 E-value=29 Score=19.12 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=9.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 38 ~~k~~~C~~C~k~F 51 (54)
T 2eps_A 38 SERPHKCQVWVSGP 51 (54)
T ss_dssp CCCCCCSSSSCCSS
T ss_pred CCCCccCCCCCCCC
Confidence 34578888888543
No 254
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.02 E-value=26 Score=18.23 Aligned_cols=14 Identities=29% Similarity=0.930 Sum_probs=9.3
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2ytj_A 9 GEKPYICAECGKAF 22 (46)
T ss_dssp SCCSEECSSSCCEE
T ss_pred CCcCeECCCCChhh
Confidence 34567888887544
No 255
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.63 E-value=28 Score=18.22 Aligned_cols=14 Identities=29% Similarity=0.861 Sum_probs=10.3
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~~~~~C~~C~k~f 22 (46)
T 2em5_A 9 STKSHQCHECGRGF 22 (46)
T ss_dssp CSCSEECSSSCCEE
T ss_pred CCCCeECCcCCCcc
Confidence 45678899998654
No 256
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.43 E-value=28 Score=18.04 Aligned_cols=14 Identities=43% Similarity=0.911 Sum_probs=10.3
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2emm_A 9 GERPHKCNECGKSF 22 (46)
T ss_dssp CCCSEECSSSCCEE
T ss_pred CCCCeeCCCCChhh
Confidence 45678899998654
No 257
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.14 E-value=22 Score=22.24 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=19.8
Q ss_pred eeccccccceeEeecC----eeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREK----DYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~----~~~kC~~CGG 128 (133)
.+|-.|+..|-+.++= ...+|+.||.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~ 37 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLPPQPKKCHFCQS 37 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSCCCSSCCTTTCC
T ss_pred CcccccCCCCcChhhCCCCCCCCccCCcCC
Confidence 5688888888888762 3678888885
No 258
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.14 E-value=28 Score=18.13 Aligned_cols=14 Identities=29% Similarity=0.849 Sum_probs=9.1
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2emp_A 9 GVKPYMCNECGKAF 22 (46)
T ss_dssp CCCSEECSSSCCEE
T ss_pred CCcCeECCCCCchh
Confidence 34567788887544
No 259
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.08 E-value=29 Score=18.08 Aligned_cols=14 Identities=36% Similarity=1.058 Sum_probs=10.2
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2ytd_A 9 GEKPYKCSECGKAF 22 (46)
T ss_dssp CCCSEECSSSCCEE
T ss_pred CCcCeECCCCCCee
Confidence 45678899998644
No 260
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=23.02 E-value=30 Score=18.59 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=10.5
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 29 ~~~~~~C~~C~~~f 42 (57)
T 3uk3_C 29 GEKPYKCEFCEYAA 42 (57)
T ss_dssp CCCCEECSSSSCEE
T ss_pred CCCCcCCCCCcchh
Confidence 35679999998644
No 261
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.95 E-value=28 Score=18.04 Aligned_cols=14 Identities=36% Similarity=1.027 Sum_probs=9.8
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2ytr_A 9 GEKPYKCNECGKAF 22 (46)
T ss_dssp SCCTTCCTTTCCCC
T ss_pred CCcCcCCCCCCCcc
Confidence 45677888888654
No 262
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=22.92 E-value=39 Score=27.09 Aligned_cols=27 Identities=19% Similarity=0.591 Sum_probs=20.9
Q ss_pred eeeccccccceeEeec----------CeeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLRE----------KDYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~----------~~~~kC~~CGG 128 (133)
..+|+.|+..-.+... ..++.|..||-
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~ 304 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGN 304 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCC
Confidence 4589999999887633 14789999985
No 263
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=22.59 E-value=25 Score=23.01 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=20.8
Q ss_pred eeccccccceeEeecC----eeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREK----DYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~----~~~kC~~CGG 128 (133)
.+|-.|+..|-+.++= ...+|+.||.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~ 54 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKLPPQPKKCHFCQS 54 (74)
T ss_dssp SCCTTTCCSSSCTTTCSSCCCCCCCTTTCC
T ss_pred CcccccCCcCcCcccCCCCCCCCccCCcCC
Confidence 4699999999988763 3678999985
No 264
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.59 E-value=28 Score=18.09 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=6.5
Q ss_pred ecCeeecCC--CCCC
Q 032810 116 REKDYFKCP--ECGM 128 (133)
Q Consensus 116 r~~~~~kC~--~CGG 128 (133)
.+..+++|. .||-
T Consensus 8 ~~~k~~~C~~~~C~k 22 (48)
T 2ent_A 8 TGEKPFACTWPGCGW 22 (48)
T ss_dssp CCCCCEECCSSSCCC
T ss_pred CCCCCeECCCCCCCC
Confidence 344455554 5553
No 265
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.88 E-value=26 Score=18.26 Aligned_cols=14 Identities=43% Similarity=1.051 Sum_probs=9.9
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~~~~~C~~C~k~f 22 (46)
T 2en1_A 9 GEKPFKCEECGKRF 22 (46)
T ss_dssp CCCSEEETTTTEEE
T ss_pred CCCCeeCCCCCccc
Confidence 45678899888544
No 266
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=21.78 E-value=27 Score=28.79 Aligned_cols=11 Identities=36% Similarity=0.915 Sum_probs=9.2
Q ss_pred eecCCCCCCCc
Q 032810 120 YFKCPECGMSY 130 (133)
Q Consensus 120 ~~kC~~CGGFl 130 (133)
.-+||.|||.|
T Consensus 171 ~P~Cp~Cgg~l 181 (361)
T 1q14_A 171 FVKCDVCGELV 181 (361)
T ss_dssp CCBCTTTCCBE
T ss_pred CCCCcCCCCEe
Confidence 46999999965
No 267
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.58 E-value=31 Score=21.86 Aligned_cols=28 Identities=32% Similarity=0.681 Sum_probs=18.7
Q ss_pred eeeeeeeeccccccceeEeecCeeecCCCCCC
Q 032810 97 KRIIAQRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 97 KRIi~Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
+|......|..|+.. ..-.-.+|..||-
T Consensus 9 ~r~~~k~iCpkC~a~----~~~gaw~CrKCG~ 36 (51)
T 3j21_g 9 ARIFKKYVCLRCGAT----NPWGAKKCRKCGY 36 (51)
T ss_dssp HHSSSEEECTTTCCE----ECTTCSSCSSSSS
T ss_pred HHHhCCccCCCCCCc----CCCCceecCCCCC
Confidence 455666778888876 3344567777773
No 268
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=21.40 E-value=42 Score=24.06 Aligned_cols=31 Identities=16% Similarity=0.578 Sum_probs=22.2
Q ss_pred eeeeeeeccccccceeEe--ecCe-----eecCCCCCC
Q 032810 98 RIIAQRRCEVCGGSGLVL--REKD-----YFKCPECGM 128 (133)
Q Consensus 98 RIi~Q~rCe~C~GsGLV~--r~~~-----~~kC~~CGG 128 (133)
+...+-.|-.|+.+---+ +..| ..+||+|.-
T Consensus 9 ~~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n 46 (100)
T 2e2z_A 9 KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKV 46 (100)
T ss_dssp EEEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCC
T ss_pred cEEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCcc
Confidence 467788899999865433 3333 789999975
No 269
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=21.11 E-value=33 Score=20.65 Aligned_cols=14 Identities=36% Similarity=0.838 Sum_probs=11.1
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 29 ~ekp~~C~~C~k~F 42 (60)
T 4gzn_C 29 GYRPRSCPECGKCF 42 (60)
T ss_dssp TCCCEECTTTCCEE
T ss_pred CCcCeECCCCCCCc
Confidence 45789999999654
No 270
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.96 E-value=23 Score=20.39 Aligned_cols=28 Identities=29% Similarity=0.636 Sum_probs=16.6
Q ss_pred eeccccccceeE----------eecCeeecCCCCCCCc
Q 032810 103 RRCEVCGGSGLV----------LREKDYFKCPECGMSY 130 (133)
Q Consensus 103 ~rCe~C~GsGLV----------~r~~~~~kC~~CGGFl 130 (133)
-.|+.|+-.=.- -.+..+++|+.|+--+
T Consensus 15 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f 52 (72)
T 1x6e_A 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52 (72)
T ss_dssp EECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEE
T ss_pred ccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCccc
Confidence 468888653211 1234678898888644
No 271
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.80 E-value=55 Score=24.70 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=19.8
Q ss_pred eeccccccceeEee---c--CeeecCCCCCCCc
Q 032810 103 RRCEVCGGSGLVLR---E--KDYFKCPECGMSY 130 (133)
Q Consensus 103 ~rCe~C~GsGLV~r---~--~~~~kC~~CGGFl 130 (133)
-.|..|+..--... + -...+|-+||-.-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCC
Confidence 35999998764443 2 2688999999643
No 272
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.76 E-value=24 Score=18.28 Aligned_cols=14 Identities=36% Similarity=0.978 Sum_probs=9.9
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 9 ~~~~~~C~~C~k~F 22 (46)
T 2eoe_A 9 GEKPYKCNECGKVF 22 (46)
T ss_dssp CCCSSEETTTTEEC
T ss_pred CCCCeECCCcChhh
Confidence 45678898888544
No 273
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=20.74 E-value=31 Score=24.05 Aligned_cols=12 Identities=33% Similarity=1.306 Sum_probs=8.8
Q ss_pred CeeecCCCCCCCc
Q 032810 118 KDYFKCPECGMSY 130 (133)
Q Consensus 118 ~~~~kC~~CGGFl 130 (133)
.++..|+ |||.+
T Consensus 21 ~y~ypCr-CGd~F 32 (89)
T 2jr7_A 21 TYFYPCP-CGDNF 32 (89)
T ss_dssp EEEEECT-TSSEE
T ss_pred EEEEcCC-CCCEE
Confidence 4677788 88864
No 274
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=20.67 E-value=74 Score=20.13 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=23.5
Q ss_pred ceeeeeeeeccccccceeEeec-C--------eeecCCCCC
Q 032810 96 SKRIIAQRRCEVCGGSGLVLRE-K--------DYFKCPECG 127 (133)
Q Consensus 96 ~KRIi~Q~rCe~C~GsGLV~r~-~--------~~~kC~~CG 127 (133)
+.|+.+...|..|++.--+... + ...-||-|+
T Consensus 4 ~~r~~I~L~ct~c~~~nY~T~KNkrn~p~rLelkKycp~c~ 44 (54)
T 3v2d_6 4 EVRIKLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCR 44 (54)
T ss_dssp SSEEEEEEEETTTCCEEEEEEEETTTSCSCCEEEEEETTTT
T ss_pred cCcceEEEEEeCCCCccEeEeecCCCCCcccEEeeeCCCCC
Confidence 4589999999999998887632 1 134577775
No 275
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=20.50 E-value=53 Score=22.96 Aligned_cols=25 Identities=28% Similarity=0.801 Sum_probs=16.6
Q ss_pred eccccccceeEeecCeee-cCCCCCCCc
Q 032810 104 RCEVCGGSGLVLREKDYF-KCPECGMSY 130 (133)
Q Consensus 104 rCe~C~GsGLV~r~~~~~-kC~~CGGFl 130 (133)
+|. |+-+=.-. ++++. .|..||++-
T Consensus 50 kC~-C~~Rt~sl-~r~P~~~C~~Cg~~~ 75 (92)
T 2kwq_A 50 KCP-CGNRTISL-DRLPKKHCSTCGLFK 75 (92)
T ss_dssp ECT-TSCEEEES-SSSCCSCCTTTCSCC
T ss_pred ECC-CCCceeEe-eeCCCCCCCCCCCCc
Confidence 575 77666555 66655 788888763
No 276
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=20.43 E-value=37 Score=18.22 Aligned_cols=14 Identities=21% Similarity=0.785 Sum_probs=10.6
Q ss_pred cCeeecCCCCCCCc
Q 032810 117 EKDYFKCPECGMSY 130 (133)
Q Consensus 117 ~~~~~kC~~CGGFl 130 (133)
+..+++|+.||--+
T Consensus 26 ~~~~~~C~~C~~~f 39 (57)
T 1bbo_A 26 DVRPYHCTYCNFSF 39 (57)
T ss_dssp SCCCEECSSSSCEE
T ss_pred CCCCccCCCCCchh
Confidence 35678999998654
No 277
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=20.37 E-value=42 Score=19.64 Aligned_cols=22 Identities=45% Similarity=0.863 Sum_probs=17.5
Q ss_pred eeccccccceeEeecCeeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
-.|++| +|.-+....||.+|..
T Consensus 8 W~C~~C----~v~N~~~~~kC~aCet 29 (34)
T 3gj5_B 8 WDCEVC----LVQNKADSTKCIACES 29 (34)
T ss_dssp EECTTT----CCEECSSCSBCTTTCC
T ss_pred eECCee----EeECccccCEEcccCC
Confidence 458888 6777788899999975
No 278
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=20.36 E-value=38 Score=23.17 Aligned_cols=12 Identities=33% Similarity=1.306 Sum_probs=8.9
Q ss_pred CeeecCCCCCCCc
Q 032810 118 KDYFKCPECGMSY 130 (133)
Q Consensus 118 ~~~~kC~~CGGFl 130 (133)
.++..|+ ||+.+
T Consensus 28 ~y~y~Cr-CGd~F 39 (83)
T 1wge_A 28 TYFYPCP-CGDNF 39 (83)
T ss_dssp EEEECCS-SSSCE
T ss_pred EEEEeCC-CCCEE
Confidence 3677888 88865
Done!