Query 032810
Match_columns 133
No_of_seqs 23 out of 25
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 09:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032810.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032810hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nlta3 g.54.1.1 (A:139-212) M 91.4 0.036 2.7E-06 34.6 1.6 26 102-129 44-69 (74)
2 d1exka_ g.54.1.1 (A:) Cysteine 91.4 0.039 2.8E-06 34.7 1.8 24 101-128 49-72 (79)
3 d1nlta3 g.54.1.1 (A:139-212) M 91.2 0.044 3.2E-06 34.2 1.9 27 103-129 19-53 (74)
4 d1exka_ g.54.1.1 (A:) Cysteine 87.3 0.11 8E-06 32.5 1.6 25 104-128 30-58 (79)
5 d1nnqa2 g.41.5.1 (A:135-171) R 75.8 0.66 4.8E-05 26.6 1.8 24 102-128 5-28 (37)
6 d1lkoa2 g.41.5.1 (A:148-191) R 73.7 1.1 7.9E-05 26.7 2.5 31 95-128 1-32 (44)
7 d2cowa1 b.34.10.1 (A:7-94) Kin 73.2 0.86 6.2E-05 30.1 2.1 48 74-131 32-80 (88)
8 d1pfta_ g.41.3.1 (A:) Transcri 71.3 0.98 7.1E-05 26.8 1.9 29 101-129 4-33 (50)
9 d1dl6a_ g.41.3.1 (A:) Transcri 70.8 1 7.4E-05 27.6 1.9 31 99-129 8-39 (58)
10 d1qypa_ g.41.3.1 (A:) RBP9 sub 69.8 1.1 8.3E-05 27.3 2.0 28 101-128 14-51 (57)
11 d1twfi2 g.41.3.1 (I:50-121) RB 68.4 1.1 8.3E-05 28.5 1.8 27 102-128 23-59 (72)
12 d2jnya1 b.171.1.1 (A:1-59) Unc 66.4 0.88 6.4E-05 27.9 0.9 38 95-132 3-40 (59)
13 d2cp6a1 b.34.10.1 (A:8-167) Re 65.9 1.7 0.00012 30.5 2.5 46 76-131 48-94 (160)
14 d2apob1 g.41.16.1 (B:403-457) 61.4 1.6 0.00012 27.1 1.4 22 102-129 4-25 (55)
15 d1hk8a_ c.7.1.3 (A:) Class III 60.4 1.6 0.00011 35.9 1.6 26 103-128 516-541 (561)
16 d2akla2 g.41.3.5 (A:3-40) Hypo 60.1 1.6 0.00011 25.5 1.2 24 104-128 5-28 (38)
17 d2gmga1 a.4.5.82 (A:1-105) Hyp 60.0 1.8 0.00013 29.8 1.6 27 100-129 65-93 (105)
18 d2exfa1 g.40.1.1 (A:12-53) HIV 57.8 1.5 0.00011 24.9 0.7 27 103-129 2-31 (42)
19 d1whha_ b.34.10.1 (A:) CLIP170 57.4 2.9 0.00021 27.9 2.3 49 73-131 39-88 (102)
20 d2ey4e1 g.41.16.1 (E:4-55) Rib 56.2 2.2 0.00016 26.2 1.4 21 103-129 3-23 (52)
21 d2cota2 g.37.1.1 (A:7-44) Zinc 55.7 2 0.00014 23.7 1.1 16 116-131 8-23 (38)
22 d2cp0a1 b.34.10.1 (A:7-89) CLI 55.2 2.8 0.00021 27.0 1.9 49 73-131 24-73 (83)
23 d1x6ea2 g.37.1.1 (A:41-66) Zin 54.7 1.8 0.00013 23.1 0.7 13 119-131 1-13 (26)
24 d2e3ha1 b.34.10.1 (A:212-282) 54.3 3.6 0.00026 25.7 2.3 50 73-132 14-64 (71)
25 d2nn6i1 b.40.4.5 (I:61-185) Ex 53.0 3.3 0.00024 27.7 2.1 34 91-129 87-120 (125)
26 d1whja_ b.34.10.1 (A:) Restin- 52.6 4.4 0.00032 26.9 2.6 45 77-131 42-87 (102)
27 d1k81a_ g.59.1.1 (A:) Zinc-bin 51.7 3.6 0.00027 23.4 1.8 28 104-131 2-32 (36)
28 d1p7aa_ g.37.1.1 (A:) Kruppel- 51.4 2.3 0.00016 23.4 0.8 15 116-130 7-21 (37)
29 d1v6ga1 g.39.1.3 (A:1-41) Acti 50.3 2.4 0.00017 25.1 0.8 22 109-130 4-25 (41)
30 d1m2ka_ c.31.1.5 (A:) AF1676, 50.1 4.1 0.0003 29.0 2.3 30 101-130 120-152 (249)
31 d1v54f_ g.41.5.3 (F:) Cytochro 49.9 3.3 0.00024 27.8 1.6 41 86-131 45-90 (98)
32 d1x6ea1 g.37.1.1 (A:8-40) Zinc 49.8 2.4 0.00017 23.2 0.7 16 116-131 3-18 (33)
33 d1ixda_ b.34.10.1 (A:) Cylindr 49.0 4.1 0.0003 27.3 2.0 50 74-132 34-84 (104)
34 d2ct1a2 g.37.1.1 (A:8-43) Tran 45.9 3.2 0.00023 22.8 0.9 15 116-130 4-18 (36)
35 d1tfia_ g.41.3.1 (A:) Transcri 44.7 4.7 0.00034 24.0 1.6 26 103-128 10-45 (50)
36 d1ltla_ b.40.4.11 (A:) DNA rep 44.6 6.4 0.00047 27.9 2.6 27 102-128 126-156 (239)
37 d2hf1a1 b.171.1.1 (A:2-60) Hyp 44.5 5.3 0.00039 24.3 1.8 35 97-131 2-36 (59)
38 d1f62a_ g.50.1.2 (A:) Williams 44.2 4.5 0.00032 22.5 1.4 23 104-129 2-24 (51)
39 d1yuza2 g.41.5.1 (A:167-202) N 43.8 5.8 0.00042 22.4 1.8 23 103-128 6-28 (36)
40 d2ct7a1 g.44.1.4 (A:8-80) Ring 43.6 5.3 0.00039 24.0 1.7 27 103-130 19-46 (73)
41 d2cona1 g.41.15.1 (A:8-73) RNA 43.6 5.9 0.00043 24.7 2.0 23 103-128 9-31 (66)
42 d1x6ha2 g.37.1.1 (A:8-43) Tran 42.9 4 0.00029 22.2 1.0 16 116-131 4-19 (36)
43 d2gmga1 a.4.5.82 (A:1-105) Hyp 42.1 2.9 0.00021 28.6 0.4 20 92-111 74-93 (105)
44 d2hqha1 b.34.10.1 (A:26-97) Dy 40.2 6 0.00044 24.8 1.6 50 72-131 15-65 (72)
45 d1neea2 g.59.1.1 (A:99-135) Zi 40.0 8.8 0.00064 21.8 2.2 28 104-131 3-33 (37)
46 d1ryqa_ g.41.9.3 (A:) putative 39.5 7 0.00051 24.5 1.9 21 102-128 9-29 (67)
47 d2gnra1 b.40.4.15 (A:8-144) Hy 38.9 6.7 0.00049 26.2 1.8 28 97-129 35-62 (137)
48 d1a1ia2 g.37.1.1 (A:132-159) Z 38.3 4.8 0.00035 21.3 0.8 12 119-130 2-13 (28)
49 d1srka_ g.37.1.1 (A:) Zinc fin 37.6 5.1 0.00037 22.0 0.9 15 116-130 3-17 (35)
50 d1twfl_ g.41.9.2 (L:) RBP12 su 36.4 5.3 0.00038 24.0 0.8 24 104-128 6-29 (46)
51 d1s5pa_ c.31.1.5 (A:) NAD-depe 34.5 7.5 0.00055 27.6 1.6 30 101-130 112-144 (235)
52 d2dkta2 g.93.1.1 (A:82-137) RI 33.0 9.1 0.00067 23.5 1.6 11 118-128 32-42 (56)
53 d2adra1 g.37.1.1 (A:102-130) A 31.8 8.1 0.00059 20.2 1.0 13 119-131 1-13 (29)
54 d1yc5a1 c.31.1.5 (A:1-245) NAD 30.4 8.9 0.00065 27.2 1.4 31 100-130 119-155 (245)
55 d1vd4a_ g.41.3.1 (A:) Transcri 29.8 12 0.00084 23.1 1.7 28 103-130 15-49 (62)
56 d2pk7a1 b.171.1.1 (A:3-61) Unc 28.2 7.3 0.00053 23.7 0.5 34 99-132 3-36 (59)
57 d2dana1 g.85.1.1 (A:8-54) Zinc 27.2 14 0.001 21.1 1.6 19 104-129 10-28 (47)
58 d1zina2 g.41.2.1 (A:126-160) M 26.8 13 0.00098 20.4 1.4 23 108-130 5-32 (35)
59 d2avue1 e.64.1.1 (E:5-160) Fla 26.3 19 0.0014 25.3 2.6 28 99-126 127-156 (156)
60 d1ptqa_ g.49.1.1 (A:) Protein 26.3 11 0.00079 20.9 1.0 28 100-128 9-36 (50)
61 d1e4va2 g.41.2.1 (A:122-156) M 26.1 15 0.0011 20.2 1.5 24 107-130 4-32 (35)
62 d1wv2a_ c.1.31.1 (A:) Thiazole 26.0 11 0.0008 28.4 1.3 16 86-101 1-16 (243)
63 d1qxfa_ g.41.8.4 (A:) Ribosoma 25.4 18 0.0013 22.1 2.0 29 102-130 7-36 (58)
64 d2e3ia1 b.34.10.1 (A:58-128) R 23.6 26 0.0019 21.7 2.5 48 74-131 15-63 (71)
65 d2coza1 b.34.10.1 (A:8-116) Ce 23.5 28 0.002 23.1 2.9 49 73-131 38-87 (109)
66 d2ak3a2 g.41.2.1 (A:125-161) M 23.4 17 0.0013 20.2 1.5 23 108-130 5-32 (37)
67 d2csha1 g.37.1.1 (A:8-60) Zinc 23.0 13 0.00093 20.5 0.9 16 116-131 26-41 (53)
68 d1sp1a_ g.37.1.1 (A:) Transcri 22.8 14 0.001 19.4 0.9 12 120-131 2-13 (29)
69 d2dlqa2 g.37.1.1 (A:35-62) GLI 22.2 12 0.00088 20.4 0.6 9 120-128 1-9 (28)
70 d1whka_ b.34.10.1 (A:) Restin- 20.9 46 0.0034 21.4 3.5 50 72-131 26-76 (91)
71 d1ma3a_ c.31.1.5 (A:) AF0112, 20.8 13 0.00097 25.8 0.7 30 101-130 122-158 (252)
No 1
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=91.44 E-value=0.036 Score=34.63 Aligned_cols=26 Identities=38% Similarity=0.981 Sum_probs=17.6
Q ss_pred eeeccccccceeEeecCeeecCCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
+..|+.|+|+|-+...+. +|+.|.|.
T Consensus 44 ~~~C~~C~G~G~~i~~~~--~C~~C~G~ 69 (74)
T d1nlta3 44 QTECDVCHGTGDIIDPKD--RCKSCNGK 69 (74)
T ss_dssp ECSCTTCSSSSSCCCTTS--BCSSSTTS
T ss_pred EEECccCccceEEeCCCC--CCCCCCCe
Confidence 456888888886654332 68888774
No 2
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
Probab=91.43 E-value=0.039 Score=34.70 Aligned_cols=24 Identities=29% Similarity=0.776 Sum_probs=19.1
Q ss_pred eeeeccccccceeEeecCeeecCCCCCC
Q 032810 101 AQRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
.|..|..|+|+|-+.. .+|+.|.|
T Consensus 49 ~~~~C~~C~G~G~~i~----~~C~~C~G 72 (79)
T d1exka_ 49 VQQTCPHCQGRGTLIK----DPCNKCHG 72 (79)
T ss_dssp EEEECTTTTTSSEECS----SBCGGGTT
T ss_pred eeEECcccCcceeECC----CCCCCCCC
Confidence 4567999999998864 36999987
No 3
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=91.18 E-value=0.044 Score=34.21 Aligned_cols=27 Identities=22% Similarity=0.674 Sum_probs=20.8
Q ss_pred eeccccccceeEeecC--------eeecCCCCCCC
Q 032810 103 RRCEVCGGSGLVLREK--------DYFKCPECGMS 129 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~--------~~~kC~~CGGF 129 (133)
+.|+.|.|+|.+.... ....|+.|+|.
T Consensus 19 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~ 53 (74)
T d1nlta3 19 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGT 53 (74)
T ss_dssp CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSS
T ss_pred CCCCCCcceeeeeEEEEecCcEEEEEEECccCccc
Confidence 5799999999887542 35679999884
No 4
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
Probab=87.34 E-value=0.11 Score=32.49 Aligned_cols=25 Identities=36% Similarity=0.748 Sum_probs=13.6
Q ss_pred eccccccceeEeecC----eeecCCCCCC
Q 032810 104 RCEVCGGSGLVLREK----DYFKCPECGM 128 (133)
Q Consensus 104 rCe~C~GsGLV~r~~----~~~kC~~CGG 128 (133)
.|..|+|+|-|.... ...-|+.|+|
T Consensus 30 ~C~~C~G~G~v~~~~g~~~~~~~C~~C~G 58 (79)
T d1exka_ 30 TCPTCHGSGQVQMRQGFFAVQQTCPHCQG 58 (79)
T ss_dssp ECTTTTTSSEEEEEETTEEEEEECTTTTT
T ss_pred eCCCccceeEEEEecccceeeEECcccCc
Confidence 466666666554432 2234666665
No 5
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=75.79 E-value=0.66 Score=26.62 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=18.0
Q ss_pred eeeccccccceeEeecCeeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
.-+|.+|| -+..+.-+-+||-||-
T Consensus 5 ~~~C~vCG---~i~~g~~P~~CPvCg~ 28 (37)
T d1nnqa2 5 VYICPICG---YTAVDEAPEYCPVCGA 28 (37)
T ss_dssp EEECTTTC---CEEESCCCSBCTTTCC
T ss_pred EEECCCCC---CEecCCCCCcCCCCCC
Confidence 34688885 5666778899999983
No 6
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=73.69 E-value=1.1 Score=26.70 Aligned_cols=31 Identities=29% Similarity=0.631 Sum_probs=22.6
Q ss_pred eceeeeeeeeccccccceeEeec-CeeecCCCCCC
Q 032810 95 FSKRIIAQRRCEVCGGSGLVLRE-KDYFKCPECGM 128 (133)
Q Consensus 95 F~KRIi~Q~rCe~C~GsGLV~r~-~~~~kC~~CGG 128 (133)
|-|--.+.-+|.+|| -+..+ .-+.+||.||-
T Consensus 1 Fkk~~~~~W~C~~CG---yi~~g~~aP~~CPvC~~ 32 (44)
T d1lkoa2 1 FLREQATKWRCRNCG---YVHEGTGAPELCPACAH 32 (44)
T ss_dssp SEEEEEEEEEETTTC---CEEEEEECCSBCTTTCC
T ss_pred CCCCCCeEEEcCCCC---cEEECCCCCCcCCCCCC
Confidence 456666788999995 55554 45789999984
No 7
>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.22 E-value=0.86 Score=30.09 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=33.7
Q ss_pred eeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 74 TWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 74 ~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
.---|+|.+.+ .|-.|+|+||-.-+ . ...|-| .+++||+|+ .+|.|+|
T Consensus 32 G~vryiG~~~~-~~g~~vGVeld~p~------G--kndG~~-~G~~YF~c~~~~G~Fv~ 80 (88)
T d2cowa1 32 GVVRYVGPADF-QEGTWVGVELDLPS------G--KNDGSI-GGKQYFRCNPGYGLLVR 80 (88)
T ss_dssp EEEEEEECCSS-SSSCEEEEECSSSC------C--SCSSEE-TTEECCCSCTTCCEEEC
T ss_pred EEEEEeeecCC-CCCcEEEEEeCCCC------C--CCCCEE-CCEEEEecCCCcEEEec
Confidence 55667887766 56679999997521 1 246766 478899995 5777776
No 8
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=71.33 E-value=0.98 Score=26.78 Aligned_cols=29 Identities=24% Similarity=0.702 Sum_probs=22.0
Q ss_pred eeeeccccccceeEeec-CeeecCCCCCCC
Q 032810 101 AQRRCEVCGGSGLVLRE-KDYFKCPECGMS 129 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~-~~~~kC~~CGGF 129 (133)
.|+.|..|+..=||.-. +-..-|..||=-
T Consensus 4 ~~~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~V 33 (50)
T d1pfta_ 4 KQKVCPACESAELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred ccccCcCCCCCcEEEECCCCeEecccCCcE
Confidence 47789999887777643 457889999953
No 9
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.80 E-value=1 Score=27.57 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=24.3
Q ss_pred eeeeeeccccccceeEeec-CeeecCCCCCCC
Q 032810 99 IIAQRRCEVCGGSGLVLRE-KDYFKCPECGMS 129 (133)
Q Consensus 99 Ii~Q~rCe~C~GsGLV~r~-~~~~kC~~CGGF 129 (133)
.+.|-+|+.|++.=+|... .-..-|..||=-
T Consensus 8 ~~~~~~Cp~Cgs~~ii~D~~~Ge~vC~~CG~V 39 (58)
T d1dl6a_ 8 ALPRVTCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CCSCCSBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred cccccCCCCCCCCCEEEECCCCcEecccCCCE
Confidence 4678899999999888743 456889999953
No 10
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=69.81 E-value=1.1 Score=27.34 Aligned_cols=28 Identities=29% Similarity=0.756 Sum_probs=22.4
Q ss_pred eeeeccccccceeEeecC----------eeecCCCCCC
Q 032810 101 AQRRCEVCGGSGLVLREK----------DYFKCPECGM 128 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~~----------~~~kC~~CGG 128 (133)
++..|+.|+....+.... .++.|..||-
T Consensus 14 ~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~ 51 (57)
T d1qypa_ 14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH 51 (57)
T ss_dssp EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCC
T ss_pred ccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCC
Confidence 457899999999988543 3889999983
No 11
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=68.38 E-value=1.1 Score=28.55 Aligned_cols=27 Identities=26% Similarity=0.645 Sum_probs=22.3
Q ss_pred eeeccccccceeEeecC----------eeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREK----------DYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~----------~~~kC~~CGG 128 (133)
+..|..|+....+.... .++.|..||-
T Consensus 23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h 59 (72)
T d1twfi2 23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSH 59 (72)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCC
T ss_pred CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCC
Confidence 67899999999998543 3889999984
No 12
>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=66.44 E-value=0.88 Score=27.95 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=30.6
Q ss_pred eceeeeeeeeccccccceeEeecCeeecCCCCCCCccc
Q 032810 95 FSKRIIAQRRCEVCGGSGLVLREKDYFKCPECGMSYGL 132 (133)
Q Consensus 95 F~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~~CGGFl~~ 132 (133)
|.+.++.-.+|..|+|.=-...++...-|+.||-.+|-
T Consensus 3 ~~~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~~~YPI 40 (59)
T d2jnya1 3 LDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRI 40 (59)
T ss_dssp SCGGGTCCCBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred CCHHHHHHhcCCCCCCEeEEeCCCCEEEcCccCccccc
Confidence 56778888899999987555677778899999987763
No 13
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.95 E-value=1.7 Score=30.54 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=30.8
Q ss_pred EEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecC-CCCCCCcc
Q 032810 76 QIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKC-PECGMSYG 131 (133)
Q Consensus 76 qi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC-~~CGGFl~ 131 (133)
-=|||.+-+ .+-.|+|+|+-.= .=+..|-| .+..||.| +.+|-|++
T Consensus 48 vr~iG~~~~-~~G~wvGVELd~p--------~GKNdGsv-~G~~YF~c~~~~G~Fv~ 94 (160)
T d2cp6a1 48 VRFLGETDF-AKGEWCGVELDEP--------LGKNDGAV-AGTRYFQCQPKYGLFAP 94 (160)
T ss_dssp EEEEEECSS-SSSEEEEEEESSS--------CCSBSSEE-TTEECCCCCTTTEEEEE
T ss_pred EEEecccCC-CCCCEEEEEeCCC--------CCCCCCEE-CCEEeeecCCCceEEec
Confidence 346776654 6778999998541 11136666 67889999 56777765
No 14
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=61.35 E-value=1.6 Score=27.12 Aligned_cols=22 Identities=36% Similarity=0.860 Sum_probs=16.9
Q ss_pred eeeccccccceeEeecCeeecCCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
-++|..|+-=+| ...||.|||-
T Consensus 4 lrkC~~C~~YTL------~~~CP~CG~~ 25 (55)
T d2apob1 4 MKKCPKCGLYTL------KEICPKCGEK 25 (55)
T ss_dssp CEECTTTCCEES------SSBCSSSCSB
T ss_pred eeeCCcccceec------cccCcCCCCc
Confidence 368999988666 2479999984
No 15
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Probab=60.41 E-value=1.6 Score=35.87 Aligned_cols=26 Identities=27% Similarity=0.707 Sum_probs=20.3
Q ss_pred eeccccccceeEeecCeeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
-.|..|+-.|-...+.....||.||-
T Consensus 516 ~~C~~Cg~~~~~~~~~~~~~CP~CGs 541 (561)
T d1hk8a_ 516 DKCFTCGSTHEMTPTENGFVCSICGE 541 (561)
T ss_dssp EEETTTCCCSCCEECSSSEECSSSCC
T ss_pred ccCCCCCCcCccccCCCCccCcCCCC
Confidence 47999998876665556778999983
No 16
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=60.09 E-value=1.6 Score=25.52 Aligned_cols=24 Identities=29% Similarity=0.796 Sum_probs=19.8
Q ss_pred eccccccceeEeecCeeecCCCCCC
Q 032810 104 RCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 104 rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
.|..|+ |-.+..++..+-||+||-
T Consensus 5 ~CP~C~-seytYedg~l~vCPeC~h 28 (38)
T d2akla2 5 PCPQCN-SEYTYEDGALLVCPECAH 28 (38)
T ss_dssp CCTTTC-CCCCEECSSSEEETTTTE
T ss_pred cCCCCC-CcceEcCCCEEECCcccC
Confidence 588886 567888899999999983
No 17
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=59.96 E-value=1.8 Score=29.76 Aligned_cols=27 Identities=30% Similarity=0.815 Sum_probs=19.8
Q ss_pred eeeeeccccccceeEeec--CeeecCCCCCCC
Q 032810 100 IAQRRCEVCGGSGLVLRE--KDYFKCPECGMS 129 (133)
Q Consensus 100 i~Q~rCe~C~GsGLV~r~--~~~~kC~~CGGF 129 (133)
+.--+|..|| .|.++ +.+-|||.|..-
T Consensus 65 v~Pp~CrkCG---fvFr~~~kkPSRCP~CKSE 93 (105)
T d2gmga1 65 IKPAQCRKCG---FVFKAEINIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTC---CBCCCCSSCCSSCSSSCCC
T ss_pred EeChhhhhcC---CeecccCCCCCCCCCCCCc
Confidence 4446788885 47776 578999999863
No 18
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}
Probab=57.79 E-value=1.5 Score=24.93 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=20.8
Q ss_pred eeccccccceeEeec---CeeecCCCCCCC
Q 032810 103 RRCEVCGGSGLVLRE---KDYFKCPECGMS 129 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~---~~~~kC~~CGGF 129 (133)
.+|-.|+..|=..++ ....+|+.||..
T Consensus 2 i~C~~Cg~~GH~~~~Cp~~~~~~C~~Cg~~ 31 (42)
T d2exfa1 2 VKCFNCGKEGHTARNCRAPRKKGCWKCGKE 31 (42)
T ss_dssp CCCTTTCCSSSCTTTCSSCCCSSCSSSCCS
T ss_pred CccccCCCcCcCcccCcCCCcCccccCCCC
Confidence 379999999988877 234579999864
No 19
>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=57.43 E-value=2.9 Score=27.94 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=34.1
Q ss_pred eeeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 73 VTWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 73 ~~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
..+--|+|.+-+ .+-.|+|+||-+-+ . ...|-| .+.+||+|+ .+|.|+|
T Consensus 39 ~G~vryvG~~~~-~~g~~~GVEld~p~------G--kndGt~-~G~rYF~C~p~~GiFv~ 88 (102)
T d1whha_ 39 QGIVRFYGKTDF-APGYWYGIELDQPT------G--KHDGSV-FGVRYFTCAPRHGVFAP 88 (102)
T ss_dssp EEEEEEEEECSS-SSSEEEEEECSSSC------C--SSSSEE-TTEECSCCCTTTEEEEC
T ss_pred eEEEEEecccCC-CCCeEEEEEeCCCC------C--CCCCEE-CCEEEEecCCCcEEEeC
Confidence 466677888765 45578999996421 1 246776 478899995 6777876
No 20
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=56.24 E-value=2.2 Score=26.20 Aligned_cols=21 Identities=43% Similarity=0.960 Sum_probs=16.0
Q ss_pred eeccccccceeEeecCeeecCCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
++|..|+-=.| ...||.|||-
T Consensus 3 rkC~~C~~YTL------~~~CP~CG~~ 23 (52)
T d2ey4e1 3 RKCPKCGRYTL------KEVCPVCGEK 23 (52)
T ss_dssp EECTTTCCEES------SSBCTTTCCB
T ss_pred ccCCcccceec------cccCcCCCCc
Confidence 68999987655 2469999984
No 21
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.71 E-value=2 Score=23.67 Aligned_cols=16 Identities=50% Similarity=1.165 Sum_probs=12.9
Q ss_pred ecCeeecCCCCCCCcc
Q 032810 116 REKDYFKCPECGMSYG 131 (133)
Q Consensus 116 r~~~~~kC~~CGGFl~ 131 (133)
.+..+++|..||--+.
T Consensus 8 t~ekpy~C~~CgK~F~ 23 (38)
T d2cota2 8 RERRRYKCDECGKSFS 23 (38)
T ss_dssp CCSCSSBCSSSCCBCS
T ss_pred CCCCCEecCCCCceee
Confidence 5678999999997654
No 22
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.25 E-value=2.8 Score=27.00 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=33.2
Q ss_pred eeeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 73 VTWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 73 ~~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
...--|+|.+.+ .|=.|+|+|+-.-+ .. ..|-| .+.+||.|+ .+|.|+|
T Consensus 24 ~G~vryvG~~~~-~~g~~vGVElD~p~------Gk--ndGt~-~G~rYF~C~~~~G~Fv~ 73 (83)
T d2cp0a1 24 TGTLRFCGTTEF-ASGQWVGVELDEPE------GK--NDGSV-GGVRYFICPPKQGLFAS 73 (83)
T ss_dssp EEEEEEEECCSS-SCSCEEEEEESSSC------CS--BCSEE-TTEECCCCSSSCEEEEC
T ss_pred eEEEEEeeecCC-CCCcEEEEEECCCC------CC--CCCEE-CCEEEeecCCCceEEcC
Confidence 356678888765 45679999996521 11 34554 677899995 5777766
No 23
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.72 E-value=1.8 Score=23.09 Aligned_cols=13 Identities=38% Similarity=1.070 Sum_probs=9.9
Q ss_pred eeecCCCCCCCcc
Q 032810 119 DYFKCPECGMSYG 131 (133)
Q Consensus 119 ~~~kC~~CGGFl~ 131 (133)
.+++|.+||--+-
T Consensus 1 KPy~C~eCgK~F~ 13 (26)
T d1x6ea2 1 KPYKCLECGKAFS 13 (26)
T ss_dssp CCEECSSSCCEES
T ss_pred CCccCCCCcCeec
Confidence 3689999997654
No 24
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.28 E-value=3.6 Score=25.73 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=33.6
Q ss_pred eeeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCccc
Q 032810 73 VTWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYGL 132 (133)
Q Consensus 73 ~~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~~ 132 (133)
...--++|.+.+- +=.|+|+||-.-+ . ...|-+ .+++||.|+ .+|.|+|.
T Consensus 14 ~G~vryvG~~~~~-~g~~~GVeld~~~------G--k~dG~~-~G~~YF~c~~~~G~Fv~~ 64 (71)
T d2e3ha1 14 AGVVRFLGETDFA-KGEWCGVELDEPL------G--KNDGAV-AGTRYFQCQPKYGLFAPV 64 (71)
T ss_dssp EEEEEEEEECSSS-SSEEEEEEESSSC------C--SBSSEE-TTEESCCCCTTCEEEEEG
T ss_pred eEEEEEecccCCC-CCCEEEEEECCCC------C--CCCCEE-CCEEEEecCCCCEEEeCH
Confidence 3566678877663 4468999996521 1 235655 478899995 68888763
No 25
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.04 E-value=3.3 Score=27.75 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=24.9
Q ss_pred eeeeeceeeeeeeeccccccceeEeecCeeecCCCCCCC
Q 032810 91 AGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 91 Ag~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
|+=|+| +..-+|+.| ..++..+....+||.||-.
T Consensus 87 ~~~~LG---Vv~A~c~~g--~~m~~~~~~~m~cp~~g~~ 120 (125)
T d2nn6i1 87 AENELG---VVVAHSESG--IQMVPISWCEMQCPKTHTK 120 (125)
T ss_dssp CSSSCE---ECCCBCSSS--CBCEEEETTEEECTTTTCC
T ss_pred cCCCcE---EEEEECCCC--CEeEeecCCEEECCCCCCe
Confidence 455665 344489854 4589999999999999954
No 26
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=52.63 E-value=4.4 Score=26.92 Aligned_cols=45 Identities=27% Similarity=0.345 Sum_probs=28.5
Q ss_pred EEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 77 IIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 77 i~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
-|+|.+.+ .+-.|+|+|+-.- ... ..|-| .+++||+|. .+|-|++
T Consensus 42 ryvG~~~~-~~g~~vGVeldep------~Gk--ndGt~-~G~~YF~C~~~~GiFv~ 87 (102)
T d1whja_ 42 RFCGTTEF-ASGQWAGIELDEP------EGK--NNGSV-GRVQYFKCAPKYGIFAP 87 (102)
T ss_dssp EEEEECSS-SCSEEEEEEESSS------CCS--BSSEE-TTEECCCCCTTTEEEEE
T ss_pred EEeeecCC-CCCcEEEEEECCC------CCC--CCCEE-CCEEEeecCCCcEEEec
Confidence 35666654 4567899999531 111 24555 667899995 5777765
No 27
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=51.74 E-value=3.6 Score=23.40 Aligned_cols=28 Identities=25% Similarity=0.692 Sum_probs=19.4
Q ss_pred eccccccce--eEeecC-eeecCCCCCCCcc
Q 032810 104 RCEVCGGSG--LVLREK-DYFKCPECGMSYG 131 (133)
Q Consensus 104 rCe~C~GsG--LV~r~~-~~~kC~~CGGFl~ 131 (133)
.|..|+..- |+..++ ++.+|.+||..-|
T Consensus 2 ~C~~C~spDT~l~ke~R~~~l~C~aCGa~r~ 32 (36)
T d1k81a_ 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEEE
T ss_pred CCCCCCCCCCEEEEcCCEEEEEeccCCCCCc
Confidence 478888753 555555 5779999997543
No 28
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.35 E-value=2.3 Score=23.37 Aligned_cols=15 Identities=33% Similarity=0.928 Sum_probs=11.9
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+.++++|+.||--+
T Consensus 7 TgeKPy~C~~C~k~F 21 (37)
T d1p7aa_ 7 TGIKPFQCPDCDRSF 21 (37)
T ss_dssp CCSSSBCCTTTCCCB
T ss_pred CCccCeEeCCCCCEe
Confidence 456899999999654
No 29
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.34 E-value=2.4 Score=25.06 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=17.7
Q ss_pred ccceeEeecCeeecCCCCCCCc
Q 032810 109 GGSGLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 109 ~GsGLV~r~~~~~kC~~CGGFl 130 (133)
+.|||=...++-.||..|+.|+
T Consensus 4 ~~~~~DYq~~fG~~C~~C~~~I 25 (41)
T d1v6ga1 4 GSSGLDYQRLYGTRCFSCDQFI 25 (41)
T ss_dssp CCCCSCGGGSCCCBCTTTCCBC
T ss_pred CcccccHHHHhCcccccccCEe
Confidence 4577777778888999999885
No 30
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=50.10 E-value=4.1 Score=28.96 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=19.7
Q ss_pred eeeeccccccceeEee---cCeeecCCCCCCCc
Q 032810 101 AQRRCEVCGGSGLVLR---EKDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r---~~~~~kC~~CGGFl 130 (133)
..-+|..|+..=-+.. .....+|+.|||.+
T Consensus 120 ~~~~C~~c~~~~~~~~~~~~~~~p~C~~Cgg~l 152 (249)
T d1m2ka_ 120 RVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLL 152 (249)
T ss_dssp EEEEESSSSCEEECSSCCCSSSCCBCSSSSSBE
T ss_pred hheeeccCCCcccccccccCCCCCCcccCCCEe
Confidence 4567988886533221 13457899999965
No 31
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}
Probab=49.86 E-value=3.3 Score=27.76 Aligned_cols=41 Identities=34% Similarity=0.746 Sum_probs=27.7
Q ss_pred ceeEEeeeeeceeeeeeeeccccccc-----eeEeecCeeecCCCCCCCcc
Q 032810 86 TPFVVAGIEFSKRIIAQRRCEVCGGS-----GLVLREKDYFKCPECGMSYG 131 (133)
Q Consensus 86 ~PFvvAg~EF~KRIi~Q~rCe~C~Gs-----GLV~r~~~~~kC~~CGGFl~ 131 (133)
.|.+|-++ |.+||+- |. |..- -+..+++.+.||++||-.+-
T Consensus 45 ~P~lVpS~-~~~RiVG---C~-~~~D~h~v~W~~l~~g~p~RC~eCG~~fk 90 (98)
T d1v54f_ 45 DPNLVPSI-TNKRIVG---CI-CEEDNSTVIWFWLHKGEAQRCPSCGTHYK 90 (98)
T ss_dssp SCEEEECS-SSEEEEE---EC-CSTTCSCCEEEEEESSSCEECTTTCCEEE
T ss_pred CCcEecCC-CCceEEe---ec-CCCCCceeEEEEEeCCCCcccCCCCcEEE
Confidence 58888776 5899986 44 4221 23446667889999997653
No 32
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.82 E-value=2.4 Score=23.22 Aligned_cols=16 Identities=25% Similarity=0.796 Sum_probs=12.6
Q ss_pred ecCeeecCCCCCCCcc
Q 032810 116 REKDYFKCPECGMSYG 131 (133)
Q Consensus 116 r~~~~~kC~~CGGFl~ 131 (133)
.+..+++|..||-.+.
T Consensus 3 Tgekpy~C~~Cgk~F~ 18 (33)
T d1x6ea1 3 SGEKPYGCVECGKAFS 18 (33)
T ss_dssp TTCCCEECSSSCCEES
T ss_pred CCCCCeeCCCCCCEeC
Confidence 4678999999997653
No 33
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.96 E-value=4.1 Score=27.29 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=31.4
Q ss_pred eeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCccc
Q 032810 74 TWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYGL 132 (133)
Q Consensus 74 ~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~~ 132 (133)
.---++|.+.+ .+=+|+|+||-.... . +-.|-| .+++||+|+ .+|-|++.
T Consensus 34 G~vryvG~~~~-~~g~~~GVeldd~~~-----G--~ndGt~-~G~rYF~C~~~~G~Fv~~ 84 (104)
T d1ixda_ 34 GVIRWIGQPPG-LNEVLAGLELEDECA-----G--CTDGTF-RGTRYFTCALKKALFVKL 84 (104)
T ss_dssp EEEEEEECCSS-SCCCEEEEEESSCCT-----T--CBSSEE-TTEECSCCCTTCBEEEEG
T ss_pred EEEEEEecCCC-CCCcEEEEEeCCCCC-----C--CcCCEE-CCEEEEecCCCcEEEech
Confidence 44557777765 345799999943221 1 124554 667899995 57777653
No 34
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.92 E-value=3.2 Score=22.77 Aligned_cols=15 Identities=13% Similarity=0.532 Sum_probs=11.8
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+..+++|+.||--+
T Consensus 4 TgekP~~C~~C~k~F 18 (36)
T d2ct1a2 4 SGEKPYECYICHARF 18 (36)
T ss_dssp SCCCSEECTTTCCEE
T ss_pred CCCCCEeCCCCcccc
Confidence 356899999999654
No 35
>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.66 E-value=4.7 Score=24.03 Aligned_cols=26 Identities=23% Similarity=0.607 Sum_probs=19.7
Q ss_pred eeccccccceeEeecC----------eeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREK----------DYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~----------~~~kC~~CGG 128 (133)
-+|+.|+......... .++.|.+||-
T Consensus 10 ~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~ 45 (50)
T d1tfia_ 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGN 45 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCC
T ss_pred EECCCCCCCccEEEEEEccCCCCCceEEEEccccCC
Confidence 4899999988865432 3889999984
No 36
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.60 E-value=6.4 Score=27.92 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred eeeccccccceeEeec----CeeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLRE----KDYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~----~~~~kC~~CGG 128 (133)
.-.|+.|+..-.+..+ ..+.+|+.||+
T Consensus 126 ~~~C~~C~~~~~~~~~~~~~~~p~~C~~C~~ 156 (239)
T d1ltla_ 126 VFECRGCMRHHAVTQSTNMITEPSLCSECGG 156 (239)
T ss_dssp EEEETTTCCEEEEECSSSSCCCCSCCTTTCC
T ss_pred EEECCCCCceEEEEecCCeecCCccCCCCCC
Confidence 3589999887776543 35789999997
No 37
>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}
Probab=44.46 E-value=5.3 Score=24.31 Aligned_cols=35 Identities=17% Similarity=0.430 Sum_probs=26.6
Q ss_pred eeeeeeeeccccccceeEeecCeeecCCCCCCCcc
Q 032810 97 KRIIAQRRCEVCGGSGLVLREKDYFKCPECGMSYG 131 (133)
Q Consensus 97 KRIi~Q~rCe~C~GsGLV~r~~~~~kC~~CGGFl~ 131 (133)
|.++.-.+|+.|+|.=-...++.-.-|..|+-.+|
T Consensus 2 ~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~l~YP 36 (59)
T d2hf1a1 2 AKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFP 36 (59)
T ss_dssp CCCEEECBCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred hhHhhhhcCCCCCCeeeEeCCCCEEecCCcCcccc
Confidence 45666788999998644456677788999997766
No 38
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.16 E-value=4.5 Score=22.52 Aligned_cols=23 Identities=35% Similarity=0.954 Sum_probs=16.0
Q ss_pred eccccccceeEeecCeeecCCCCCCC
Q 032810 104 RCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 104 rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
||.+|+.+| .+.....|-.|...
T Consensus 2 ~C~vC~~~~---~~~~~i~Cd~C~~~ 24 (51)
T d1f62a_ 2 RCKVCRKKG---EDDKLILCDECNKA 24 (51)
T ss_dssp CCTTTCCSS---CCSCCEECTTTCCE
T ss_pred CCcCcCCCC---CCCCEEEcCCCCCC
Confidence 788888766 34556778888654
No 39
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=43.81 E-value=5.8 Score=22.37 Aligned_cols=23 Identities=35% Similarity=0.941 Sum_probs=17.9
Q ss_pred eeccccccceeEeecCeeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
-.|.+| |-+..+.-+-+||-||-
T Consensus 6 ~vC~vC---Gyi~~g~~Pe~CPvCg~ 28 (36)
T d1yuza2 6 HLCPIC---GYIHKGEDFEKCPICFR 28 (36)
T ss_dssp EECSSS---CCEEESSCCSBCTTTCC
T ss_pred EECCCC---CCEeeCCCCCcCCCCCC
Confidence 457788 46677778999999984
No 40
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.61 E-value=5.3 Score=24.03 Aligned_cols=27 Identities=26% Similarity=0.689 Sum_probs=18.6
Q ss_pred eeccccccceeEe-ecCeeecCCCCCCCc
Q 032810 103 RRCEVCGGSGLVL-REKDYFKCPECGMSY 130 (133)
Q Consensus 103 ~rCe~C~GsGLV~-r~~~~~kC~~CGGFl 130 (133)
+.|+.|+.. ++. .+.....|+.||-.+
T Consensus 19 k~CP~C~~~-~~~~~~~~~~~C~~C~~~f 46 (73)
T d2ct7a1 19 LWCAQCSFG-FIYEREQLEATCPQCHQTF 46 (73)
T ss_dssp ECCSSSCCC-EECCCSCSCEECTTTCCEE
T ss_pred CCCCCCCCE-eEECCCCCEEEcCCCCCeE
Confidence 679999873 333 334678899998654
No 41
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=43.57 E-value=5.9 Score=24.72 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=16.1
Q ss_pred eeccccccceeEeecCeeecCCCCCC
Q 032810 103 RRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 103 ~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
.||-.|-- +.++-...-||.||+
T Consensus 9 LrC~aCf~---~t~~~~k~FCpkCGn 31 (66)
T d2cona1 9 LRCHGCFK---TTSDMNRVFCGHCGN 31 (66)
T ss_dssp EECSSSCC---EESCSSCCSCSSSCC
T ss_pred eEeeecCc---CcCCcccccCcccCC
Confidence 46777765 566666677888886
No 42
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.90 E-value=4 Score=22.23 Aligned_cols=16 Identities=13% Similarity=0.634 Sum_probs=12.3
Q ss_pred ecCeeecCCCCCCCcc
Q 032810 116 REKDYFKCPECGMSYG 131 (133)
Q Consensus 116 r~~~~~kC~~CGGFl~ 131 (133)
.+..+++|..||--+.
T Consensus 4 TgekPy~C~~C~k~F~ 19 (36)
T d1x6ha2 4 TGEKPYACSHCDKTFR 19 (36)
T ss_dssp CCCCCEECSSSSCEES
T ss_pred CCCCCEECCCCCCCcC
Confidence 4567999999997554
No 43
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=42.11 E-value=2.9 Score=28.62 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=17.8
Q ss_pred eeeeceeeeeeeeccccccc
Q 032810 92 GIEFSKRIIAQRRCEVCGGS 111 (133)
Q Consensus 92 g~EF~KRIi~Q~rCe~C~Gs 111 (133)
||+|-.+|-.--||+.|++.
T Consensus 74 GfvFr~~~kkPSRCP~CKSE 93 (105)
T d2gmga1 74 GFVFKAEINIPSRCPKCKSE 93 (105)
T ss_dssp CCBCCCCSSCCSSCSSSCCC
T ss_pred CCeecccCCCCCCCCCCCCc
Confidence 88998899889999999874
No 44
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.22 E-value=6 Score=24.80 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=32.9
Q ss_pred ceeeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCC-CCCCCcc
Q 032810 72 EVTWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCP-ECGMSYG 131 (133)
Q Consensus 72 e~~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~-~CGGFl~ 131 (133)
+...--|+|.+.+ .|=.|+|+|+-.-+ . +..|-+ .+.+||.|+ .+|-|++
T Consensus 15 ~~G~vryvG~~~~-~~g~~vGVeldep~------G--kndGt~-~G~~YF~C~~~~G~Fv~ 65 (72)
T d2hqha1 15 HRGTVAYVGATLF-ATGKWVGVILDEAK------G--KNDGTV-QGRKYFTCDEGHGIFVR 65 (72)
T ss_dssp CEEEEEEEECCSS-SSSCEEEEEESSSC------S--SBSSEE-TTEESSCCCTTTEEEEC
T ss_pred EEEEEEEecccCC-CCCcEEEEEEccCC------C--CCCCEE-CCEEEEecCCCcEEEec
Confidence 3456667887765 56689999996521 1 135665 477899995 4666654
No 45
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=39.99 E-value=8.8 Score=21.80 Aligned_cols=28 Identities=21% Similarity=0.647 Sum_probs=19.4
Q ss_pred eccccccc--eeEeecC-eeecCCCCCCCcc
Q 032810 104 RCEVCGGS--GLVLREK-DYFKCPECGMSYG 131 (133)
Q Consensus 104 rCe~C~Gs--GLV~r~~-~~~kC~~CGGFl~ 131 (133)
.|..|+.. -|+..++ ++.+|.+||..-|
T Consensus 3 ~C~~C~spDT~l~ke~R~~~l~C~aCGa~r~ 33 (37)
T d1neea2 3 ICHECNRPDTRIIREGRISLLKCEACGAKAP 33 (37)
T ss_dssp HHTCCSSCSSCCEEETTTTEEECSTTSCCCC
T ss_pred ECCCCCCCCCEEEEcCCEEEEEeccCCCCcc
Confidence 37778765 3555554 5789999997644
No 46
>d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]}
Probab=39.54 E-value=7 Score=24.52 Aligned_cols=21 Identities=33% Similarity=1.048 Sum_probs=13.6
Q ss_pred eeeccccccceeEeecCeeecCCCCCC
Q 032810 102 QRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
.|.|-.| ++|..++ .||.||.
T Consensus 9 ~rAC~~C---~~i~~~~---~CpnC~s 29 (67)
T d1ryqa_ 9 EKACRHC---HYITSED---RCPVCGS 29 (67)
T ss_dssp CEEETTT---CBEESSS---SCTTTCC
T ss_pred ChhHhhC---CCccCCC---CCCCCcC
Confidence 4666666 3666554 4888875
No 47
>d2gnra1 b.40.4.15 (A:8-144) Hypothetical protein SSO2064 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=38.93 E-value=6.7 Score=26.18 Aligned_cols=28 Identities=25% Similarity=0.777 Sum_probs=16.9
Q ss_pred eeeeeeeeccccccceeEeecCeeecCCCCCCC
Q 032810 97 KRIIAQRRCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 97 KRIi~Q~rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
+|++.| +|..|+ -+.--...+ |+.|++-
T Consensus 35 grL~~~-~C~~CG---~v~~Ppr~~-Cp~C~s~ 62 (137)
T d2gnra1 35 NKIIGS-KCSKCG---RIFVPARSY-CEHCFVK 62 (137)
T ss_dssp TCCEEE-ECTTTC---CEEESCCSE-ETTTTEE
T ss_pred CeEEEE-EcCCCC---CEEeCcccc-CCCCCCC
Confidence 355554 577775 455444443 9999863
No 48
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.31 E-value=4.8 Score=21.28 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=9.5
Q ss_pred eeecCCCCCCCc
Q 032810 119 DYFKCPECGMSY 130 (133)
Q Consensus 119 ~~~kC~~CGGFl 130 (133)
.+++|+.||--+
T Consensus 2 KPy~C~~C~k~F 13 (28)
T d1a1ia2 2 KPFQCRICMRNF 13 (28)
T ss_dssp CCEECTTTCCEE
T ss_pred cCccCCCCcCEe
Confidence 478999999654
No 49
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.65 E-value=5.1 Score=22.03 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=11.7
Q ss_pred ecCeeecCCCCCCCc
Q 032810 116 REKDYFKCPECGMSY 130 (133)
Q Consensus 116 r~~~~~kC~~CGGFl 130 (133)
.+.++++|..||--+
T Consensus 3 TGekPy~C~~C~k~F 17 (35)
T d1srka_ 3 SGKRPFVCRICLSAF 17 (35)
T ss_dssp SCCSCEECSSSCCEE
T ss_pred CCCccccCCCCCCcc
Confidence 357899999998644
No 50
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.41 E-value=5.3 Score=23.97 Aligned_cols=24 Identities=29% Similarity=0.737 Sum_probs=17.1
Q ss_pred eccccccceeEeecCeeecCCCCCC
Q 032810 104 RCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 104 rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
-|..|+..=- .+.+...+|-+||.
T Consensus 6 iCgeCg~~~~-l~~~d~irCreCG~ 29 (46)
T d1twfl_ 6 ICAECSSKLS-LSRTDAVRCKDCGH 29 (46)
T ss_dssp ECSSSCCEEC-CCTTSTTCCSSSCC
T ss_pred EcccCCCceE-eCCCCcEEeccCCc
Confidence 4778876533 45567899999996
No 51
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]}
Probab=34.50 E-value=7.5 Score=27.56 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=12.5
Q ss_pred eeeeccccccceeEeec---CeeecCCCCCCCc
Q 032810 101 AQRRCEVCGGSGLVLRE---KDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV~r~---~~~~kC~~CGGFl 130 (133)
..-+|..|+-.--...+ ...-.|+.|||.|
T Consensus 112 ~~~~C~~C~~~~~~~~~~~~~~~~~c~~Cgg~l 144 (235)
T d1s5pa_ 112 LKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPL 144 (235)
T ss_dssp EEEEETTTCCEEECCSCCCSSCCC-------CE
T ss_pred cEEEECCCCCccccccccccccccccccccccc
Confidence 34689999754332222 2356799999965
No 52
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.03 E-value=9.1 Score=23.53 Aligned_cols=11 Identities=36% Similarity=1.322 Sum_probs=6.3
Q ss_pred CeeecCCCCCC
Q 032810 118 KDYFKCPECGM 128 (133)
Q Consensus 118 ~~~~kC~~CGG 128 (133)
..+|-|..|+.
T Consensus 32 ~~ffHC~~C~~ 42 (56)
T d2dkta2 32 EDFFHCLKCNL 42 (56)
T ss_dssp GGEEEETTTTE
T ss_pred ccccccCcccc
Confidence 35666666653
No 53
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=31.82 E-value=8.1 Score=20.25 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=9.6
Q ss_pred eeecCCCCCCCcc
Q 032810 119 DYFKCPECGMSYG 131 (133)
Q Consensus 119 ~~~kC~~CGGFl~ 131 (133)
.+++|+.||--+-
T Consensus 1 kp~~C~~C~k~F~ 13 (29)
T d2adra1 1 RSFVCEVCTRAFA 13 (29)
T ss_dssp CCBCCTTTCCCBS
T ss_pred CcCCCCCCCCCCC
Confidence 3688999987653
No 54
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]}
Probab=30.39 E-value=8.9 Score=27.17 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=21.2
Q ss_pred eeeeeccccccceeEe------ecCeeecCCCCCCCc
Q 032810 100 IAQRRCEVCGGSGLVL------REKDYFKCPECGMSY 130 (133)
Q Consensus 100 i~Q~rCe~C~GsGLV~------r~~~~~kC~~CGGFl 130 (133)
+..-+|..|+..=.+. ......+|+.|||.|
T Consensus 119 l~~~~C~~c~~~~~~~~~~~~~~~~~~p~c~~Cgg~l 155 (245)
T d1yc5a1 119 VEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLI 155 (245)
T ss_dssp EEEEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBE
T ss_pred cceeeecccCCCccHHHHhhhhhcccCCCccccCCcc
Confidence 3466899998764432 224567899999975
No 55
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.77 E-value=12 Score=23.12 Aligned_cols=28 Identities=25% Similarity=0.574 Sum_probs=19.5
Q ss_pred eeccccccc-------eeEeecCeeecCCCCCCCc
Q 032810 103 RRCEVCGGS-------GLVLREKDYFKCPECGMSY 130 (133)
Q Consensus 103 ~rCe~C~Gs-------GLV~r~~~~~kC~~CGGFl 130 (133)
-+|+.|+-+ -|+.-....|+|.-|+|-|
T Consensus 15 y~Cp~C~~~ys~Lda~~L~d~~~~~F~C~~C~~el 49 (62)
T d1vd4a_ 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEV 49 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBC
T ss_pred eECCCCCCCcchhhHHHhcCcCCCeEEecCCCCEE
Confidence 467777754 4566667788888888754
No 56
>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}
Probab=28.17 E-value=7.3 Score=23.74 Aligned_cols=34 Identities=18% Similarity=0.457 Sum_probs=24.7
Q ss_pred eeeeeeccccccceeEeecCeeecCCCCCCCccc
Q 032810 99 IIAQRRCEVCGGSGLVLREKDYFKCPECGMSYGL 132 (133)
Q Consensus 99 Ii~Q~rCe~C~GsGLV~r~~~~~kC~~CGGFl~~ 132 (133)
++.-.+|++|+|.=-...++...-|..|+-.+|-
T Consensus 3 LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~laYPI 36 (59)
T d2pk7a1 3 LLDILACPICKGPLKLSADKTELISKGAGLAYPI 36 (59)
T ss_dssp GGGTCCCTTTCCCCEECTTSSEEEETTTTEEEEE
T ss_pred hHhheECCCCCCcceEeCCCCEEecCCcCccccc
Confidence 3444689999986444566778899999977763
No 57
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.21 E-value=14 Score=21.12 Aligned_cols=19 Identities=26% Similarity=0.812 Sum_probs=14.2
Q ss_pred eccccccceeEeecCeeecCCCCCCC
Q 032810 104 RCEVCGGSGLVLREKDYFKCPECGMS 129 (133)
Q Consensus 104 rCe~C~GsGLV~r~~~~~kC~~CGGF 129 (133)
+|..|+..++ .+|..|+..
T Consensus 10 ~C~~Cg~~~~-------~~Cs~C~~~ 28 (47)
T d2dana1 10 RCAYCSAEAS-------KRCSRCQNE 28 (47)
T ss_dssp CCSSSCCCCC-------EECTTTSCS
T ss_pred cCcCCCChhh-------ccCCCCCCE
Confidence 6999987654 579998753
No 58
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.76 E-value=13 Score=20.44 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=15.1
Q ss_pred cccceeEeec-----CeeecCCCCCCCc
Q 032810 108 CGGSGLVLRE-----KDYFKCPECGMSY 130 (133)
Q Consensus 108 C~GsGLV~r~-----~~~~kC~~CGGFl 130 (133)
|...|-+.-. +..-+|-.|||-|
T Consensus 5 C~~CG~~Yh~~~~pPk~~g~CD~cG~~L 32 (35)
T d1zina2 5 CRNCGATYHLIFHPPAKPGVCDKCGGEL 32 (35)
T ss_dssp ETTTCCEEETTTBCCSSTTBCTTTCCBE
T ss_pred CcCcCchhccccCCCCCCCcCCCCCCCc
Confidence 4445556543 4567899999865
No 59
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=26.34 E-value=19 Score=25.32 Aligned_cols=28 Identities=25% Similarity=0.759 Sum_probs=22.4
Q ss_pred eeeeeeccccccceeEeecC--eeecCCCC
Q 032810 99 IIAQRRCEVCGGSGLVLREK--DYFKCPEC 126 (133)
Q Consensus 99 Ii~Q~rCe~C~GsGLV~r~~--~~~kC~~C 126 (133)
.+...+|..|+|.=++..++ ..+.||-|
T Consensus 127 ~L~l~~C~~C~g~fv~~~~~~~~~~~Cp~C 156 (156)
T d2avue1 127 LLQLSSCNCCGGNFITHAHQPVGSFACSLC 156 (156)
T ss_dssp SEEEEECTTTCCEEEEESSCCSSCCCCTTC
T ss_pred ceeecccCCCCCceecccccCCcCCcCCCC
Confidence 47889999999999887664 45778777
No 60
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.26 E-value=11 Score=20.90 Aligned_cols=28 Identities=36% Similarity=0.721 Sum_probs=19.0
Q ss_pred eeeeeccccccceeEeecCeeecCCCCCC
Q 032810 100 IAQRRCEVCGGSGLVLREKDYFKCPECGM 128 (133)
Q Consensus 100 i~Q~rCe~C~GsGLV~r~~~~~kC~~CGG 128 (133)
.....|.+|+. =|...++.-++|.+|+-
T Consensus 9 ~~~~~C~~C~~-~i~g~~~qg~~C~~C~~ 36 (50)
T d1ptqa_ 9 MSPTFCDHCGS-LLWGLVKQGLKCEDCGM 36 (50)
T ss_dssp SSCCBCTTTCC-BCCSSSSCEEEETTTCC
T ss_pred CCCcCCcccCC-cccCcccCcEECCCCCC
Confidence 34568999954 23333567899999974
No 61
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=26.14 E-value=15 Score=20.23 Aligned_cols=24 Identities=29% Similarity=0.055 Sum_probs=16.1
Q ss_pred ccccceeEeec-----CeeecCCCCCCCc
Q 032810 107 VCGGSGLVLRE-----KDYFKCPECGMSY 130 (133)
Q Consensus 107 ~C~GsGLV~r~-----~~~~kC~~CGGFl 130 (133)
+|.++|-+.-. +..-+|-.||+-|
T Consensus 4 ~c~~cG~~Yh~~~~PPk~~g~CD~cg~~L 32 (35)
T d1e4va2 4 VHAPSGRVYHVKFNPPKVEGKDDVTGEEL 32 (35)
T ss_dssp EETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCcCcCChhhhccCccccCCcccCCCCEe
Confidence 35666666643 3466899999865
No 62
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.05 E-value=11 Score=28.41 Aligned_cols=16 Identities=44% Similarity=0.960 Sum_probs=14.3
Q ss_pred ceeEEeeeeeceeeee
Q 032810 86 TPFVVAGIEFSKRIIA 101 (133)
Q Consensus 86 ~PFvvAg~EF~KRIi~ 101 (133)
+||.|++.+|.-|++.
T Consensus 1 ~Pl~I~~~~f~SRLil 16 (243)
T d1wv2a_ 1 TPFVIAGRTYGSRLLV 16 (243)
T ss_dssp CCEEETTEEESCCEEE
T ss_pred CCeEECCEEEEcceEE
Confidence 7999999999988874
No 63
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=25.41 E-value=18 Score=22.15 Aligned_cols=29 Identities=21% Similarity=0.592 Sum_probs=22.7
Q ss_pred eeeccccccceeEeec-CeeecCCCCCCCc
Q 032810 102 QRRCEVCGGSGLVLRE-KDYFKCPECGMSY 130 (133)
Q Consensus 102 Q~rCe~C~GsGLV~r~-~~~~kC~~CGGFl 130 (133)
.-+|..|+.-=.|.-. ....+|..||-.|
T Consensus 7 ~VkC~~C~n~~ivFsha~t~V~C~~Cg~~L 36 (58)
T d1qxfa_ 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (58)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred EeECCCCCCeEEEEecCceEEEccccCCEE
Confidence 3579999988888744 5689999998665
No 64
>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.61 E-value=26 Score=21.68 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=31.3
Q ss_pred eeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCCC-CCCCcc
Q 032810 74 TWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCPE-CGMSYG 131 (133)
Q Consensus 74 ~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~~-CGGFl~ 131 (133)
..--|+|.+.+ .|=.|+|+|+-.-+ . +..|-| .+.+||.|+. +|-|++
T Consensus 15 G~vryvG~~~~-~~g~~vGVEld~p~------G--k~dGt~-~G~~YF~c~~~~G~Fv~ 63 (71)
T d2e3ia1 15 GFIQFLGETQF-APGQWAGIVLDEPI------G--KNDGSV-AGVRYFQCEPLKGIFTR 63 (71)
T ss_dssp EEEEEEEECSS-SSSEEEEEEESSSC------S--SBSSEE-TTEESSCCSTTCEEEEC
T ss_pred EEEEEEeecCC-CCCcEEEEEECCCC------C--CCCCEE-CCEEEEecCCCcEEEeC
Confidence 55567887765 56679999996521 1 246665 4788999975 444544
No 65
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.45 E-value=28 Score=23.10 Aligned_cols=49 Identities=22% Similarity=0.246 Sum_probs=32.5
Q ss_pred eeeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCCC-CCCCcc
Q 032810 73 VTWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCPE-CGMSYG 131 (133)
Q Consensus 73 ~~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~~-CGGFl~ 131 (133)
.+---++|.+.+ .|=.|+|+||-.-+ . +..|-| .+.+||+|.. +|.|++
T Consensus 38 ~G~vryiG~~~~-~~g~~vGVElDep~------G--kndGtv-~G~~YF~C~~~~GiFv~ 87 (109)
T d2coza1 38 PGILRFKGETSF-AKGFWAGVELDKPE------G--NNNGTY-DGIAYFECKEKHGIFAP 87 (109)
T ss_dssp EEEEEEEEECSS-SSSEEEEEEESSTT------S--SBCSEE-TTEECCCCCSSCEEEEC
T ss_pred eEEEEEEeecCC-CCCcEEEEEecCCC------C--CCCCEE-CCEEEEecCCCcEEEeC
Confidence 345557887775 55689999996421 1 236766 7789999964 555654
No 66
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=23.44 E-value=17 Score=20.20 Aligned_cols=23 Identities=26% Similarity=0.072 Sum_probs=13.3
Q ss_pred cccceeEeec-----CeeecCCCCCCCc
Q 032810 108 CGGSGLVLRE-----KDYFKCPECGMSY 130 (133)
Q Consensus 108 C~GsGLV~r~-----~~~~kC~~CGGFl 130 (133)
|.++|-+.-- +..-+|-.|||-|
T Consensus 5 c~~cG~~Yh~~~~pPk~~g~CD~cg~~L 32 (37)
T d2ak3a2 5 HPGSGRVYNIEFNPPKTMGIDDLTGEPL 32 (37)
T ss_dssp ETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred eCCcCChhhhccCCccccCCccCCCCcC
Confidence 4444555432 4466788888754
No 67
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.97 E-value=13 Score=20.46 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=11.8
Q ss_pred ecCeeecCCCCCCCcc
Q 032810 116 REKDYFKCPECGMSYG 131 (133)
Q Consensus 116 r~~~~~kC~~CGGFl~ 131 (133)
.+..+++|..||-.+.
T Consensus 26 t~ekpy~C~~C~k~F~ 41 (53)
T d2csha1 26 LGLRPYGCGVCGKKFK 41 (53)
T ss_dssp SCCCSEECTTTSCEES
T ss_pred ccccCCcCCCcCCEec
Confidence 3456889999997654
No 68
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.82 E-value=14 Score=19.37 Aligned_cols=12 Identities=42% Similarity=1.029 Sum_probs=9.1
Q ss_pred eecCCCCCCCcc
Q 032810 120 YFKCPECGMSYG 131 (133)
Q Consensus 120 ~~kC~~CGGFl~ 131 (133)
++.|+.||--+-
T Consensus 2 py~C~~C~k~F~ 13 (29)
T d1sp1a_ 2 KFACPECPKRFM 13 (29)
T ss_dssp CSCCTTTTCCCS
T ss_pred CEECCcCCCeec
Confidence 678999987653
No 69
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.19 E-value=12 Score=20.41 Aligned_cols=9 Identities=56% Similarity=1.556 Sum_probs=7.2
Q ss_pred eecCCCCCC
Q 032810 120 YFKCPECGM 128 (133)
Q Consensus 120 ~~kC~~CGG 128 (133)
+|+|+.||.
T Consensus 1 pf~c~kcgk 9 (28)
T d2dlqa2 1 PFECPKCGK 9 (28)
T ss_dssp SCBCTTTCC
T ss_pred CCccccchh
Confidence 478999985
No 70
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.93 E-value=46 Score=21.39 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=33.1
Q ss_pred ceeeEEEEeeeeccceeEEeeeeeceeeeeeeeccccccceeEeecCeeecCCCC-CCCcc
Q 032810 72 EVTWQIIVGAIAGVTPFVVAGIEFSKRIIAQRRCEVCGGSGLVLREKDYFKCPEC-GMSYG 131 (133)
Q Consensus 72 e~~Wqi~vG~iAGv~PFvvAg~EF~KRIi~Q~rCe~C~GsGLV~r~~~~~kC~~C-GGFl~ 131 (133)
+...--|||.+.+ .|-.|+|+||-.-+ . +..|-| .+.+||+|... |-|++
T Consensus 26 ~~G~vryvG~~~~-~~g~~vGVElD~p~------G--kndGtv-~G~~YF~C~~~~G~Fv~ 76 (91)
T d1whka_ 26 EMATVRYVGPTDF-ASGIWLGLELRSAK------G--KNDGAV-GDKRYFTCKPNYGVLVR 76 (91)
T ss_dssp CEEEECCCEECSS-SSSEEEEEECSSSC------S--SCCSEE-TTEECCCCSTTCCCEEC
T ss_pred eEEEEEEeeecCC-CCCCEEEEEeCCCC------C--CCCCEE-CCEEEeecCCCceEEeC
Confidence 4566667887765 66789999996431 1 136665 67889999754 45544
No 71
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.77 E-value=13 Score=25.76 Aligned_cols=30 Identities=7% Similarity=-0.205 Sum_probs=18.9
Q ss_pred eeeeccccccceeE-------eecCeeecCCCCCCCc
Q 032810 101 AQRRCEVCGGSGLV-------LREKDYFKCPECGMSY 130 (133)
Q Consensus 101 ~Q~rCe~C~GsGLV-------~r~~~~~kC~~CGGFl 130 (133)
...+|..|...=.. .......+|+.|||.|
T Consensus 122 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~~c~~cgg~l 158 (252)
T d1ma3a_ 122 DKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYV 158 (252)
T ss_dssp EEEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSCE
T ss_pred ceeEEcccccccccchhhhhhhcCCCCCCcccccccC
Confidence 35678877653211 1234577899999976
Done!