RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032810
         (133 letters)



>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
           NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
          Length = 561

 Score = 32.6 bits (74), Expect = 0.009
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 104 RCEVCGGSGLVLREKDYFKCPECG 127
           +C  CG +  +   ++ F C  CG
Sbjct: 517 KCFTCGSTHEMTPTENGFVCSICG 540


>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345
           {Chromobacterium violaceum [TaxId: 536]}
          Length = 59

 Score = 24.6 bits (54), Expect = 1.6
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 104 RCEVCGGSGLVLREKDYFKCPECGMSY 130
            C +C G  +  + KD   C    +++
Sbjct: 9   VCPLCKGPLVFDKSKDELICKGDRLAF 35


>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779
           {Pseudomonas fluorescens [TaxId: 294]}
          Length = 59

 Score = 24.2 bits (53), Expect = 1.7
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 104 RCEVCGGSGLVLREKDYFKCPECGMSY 130
            C +C G   +  +K        G++Y
Sbjct: 8   ACPICKGPLKLSADKTELISKGAGLAY 34


>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592
           {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 59

 Score = 24.2 bits (53), Expect = 2.1
 Identities = 4/27 (14%), Positives = 7/27 (25%)

Query: 104 RCEVCGGSGLVLREKDYFKCPECGMSY 130
            C    G    L  +         ++Y
Sbjct: 12  ACPKDKGPLRYLESEQLLVNERLNLAY 38


>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein
           mas5 (Hsp40, Ydj1), insert domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 74

 Score = 23.5 bits (50), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 102 QRRCEVCGGSGLVLREKDYFKCPECG 127
           Q  C+VC G+G ++  KD  +C  C 
Sbjct: 44  QTECDVCHGTGDIIDPKD--RCKSCN 67


>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 46

 Score = 22.5 bits (48), Expect = 7.4
 Identities = 5/12 (41%), Positives = 6/12 (50%)

Query: 117 EKDYFKCPECGM 128
             DY+KC  C  
Sbjct: 10  LADYWKCTSCNE 21


>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 243

 Score = 23.7 bits (51), Expect = 7.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 86  TPFVVAGIEFSKRII 100
           TPFV+AG  +  R++
Sbjct: 1   TPFVIAGRTYGSRLL 15


>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 21.9 bits (47), Expect = 8.2
 Identities = 5/14 (35%), Positives = 7/14 (50%), Gaps = 1/14 (7%)

Query: 117 EKDYFKCPECGMSY 130
           EK Y +C  C   +
Sbjct: 6   EKPY-ECYICHARF 18


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.134    0.426 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 507,004
Number of extensions: 21746
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 30
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.3 bits)