BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032811
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CQA|A Chain A, Birch Pollen Profilin
Length = 133
Score = 255 bits (651), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 119/133 (89%), Positives = 130/133 (97%)
Query: 1 MSWQTYVDDHLMCDIDGQGQHLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPG 60
MSWQTYVD+HLMCDIDGQG+ L+ASAIVGHDGSVWAQS++FP+FKP+EI GIMKDF++PG
Sbjct: 1 MSWQTYVDEHLMCDIDGQGEELAASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPG 60
Query: 61 HLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMI 120
HLAPTGLHLGG KYMVIQGEAGAVIRGKKGSGG+TIKKTGQALVFGIYEEPVTPGQCNM+
Sbjct: 61 HLAPTGLHLGGIKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
Query: 121 VERLGDYLIDQGL 133
VERLGDYLIDQGL
Sbjct: 121 VERLGDYLIDQGL 133
>pdb|1G5U|A Chain A, Latex Profilin Hevb8
pdb|1G5U|B Chain B, Latex Profilin Hevb8
Length = 131
Score = 233 bits (593), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 107/133 (80%), Positives = 124/133 (93%), Gaps = 2/133 (1%)
Query: 1 MSWQTYVDDHLMCDIDGQGQHLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPG 60
MSWQTYVDDHLMCDIDG L+A+AI+GHDGSVWAQS++FP+FK +E+A +MKDFD+PG
Sbjct: 1 MSWQTYVDDHLMCDIDGH--RLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPG 58
Query: 61 HLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMI 120
LAPTGLHLGGTKYMVIQGE GAVIRGKKGSGG+T+K+TGQAL+ GIY+EP+TPGQCNMI
Sbjct: 59 SLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKRTGQALIIGIYDEPLTPGQCNMI 118
Query: 121 VERLGDYLIDQGL 133
VERLGDYL+DQGL
Sbjct: 119 VERLGDYLLDQGL 131
>pdb|1A0K|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 131
Score = 210 bits (535), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 115/133 (86%), Gaps = 2/133 (1%)
Query: 1 MSWQTYVDDHLMCDIDGQGQHLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPG 60
MSWQ+YVDDHLMCD+ +G HL+A+AI+G DGSVWAQSA FP+ KP+EI GI KDF++PG
Sbjct: 1 MSWQSYVDDHLMCDV--EGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPG 58
Query: 61 HLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMI 120
LAPTGL LGG KYMVIQGE GAVIRGKKG GGVTIKKT QALVFG Y+EP+T GQCN++
Sbjct: 59 FLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLV 118
Query: 121 VERLGDYLIDQGL 133
VERLGDYLI+ L
Sbjct: 119 VERLGDYLIESEL 131
>pdb|3NUL|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 130
Score = 202 bits (513), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 111/132 (84%), Gaps = 2/132 (1%)
Query: 2 SWQTYVDDHLMCDIDGQGQHLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPGH 61
SWQ+YVDDHL CD+ +G HL+A+AI+G DGSVWAQSA FP+ KP+EI GI KDF++PG
Sbjct: 1 SWQSYVDDHLXCDV--EGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGF 58
Query: 62 LAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMIV 121
LAPTGL LGG KY VIQGE GAVIRGKKG GGVTIKKT QALVFG Y+EP T GQCN++V
Sbjct: 59 LAPTGLFLGGEKYXVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPXTGGQCNLVV 118
Query: 122 ERLGDYLIDQGL 133
ERLGDYLI+ L
Sbjct: 119 ERLGDYLIESEL 130
>pdb|1F2K|A Chain A, Crystal Structure Of Acanthamoeba Castellanii Profilin Ii,
Cubic Crystal Form
pdb|1F2K|B Chain B, Crystal Structure Of Acanthamoeba Castellanii Profilin Ii,
Cubic Crystal Form
pdb|2ACG|A Chain A, Acanthamoeba Castellanii Profilin Ii
Length = 125
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 2 SWQTYVDDHLMCDIDGQGQHLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPGH 61
SWQTYVD +L+ G G ++ +AI+GHDG+ WA SA F P A + F
Sbjct: 1 SWQTYVDTNLV----GTGA-VTQAAIIGHDGNTWATSAGFA-VSPANGAALANAFKDATA 54
Query: 62 LAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMIV 121
+ G L GT+Y+ I+ + +V GKKGS GV KT +A++ G+Y E + PG +V
Sbjct: 55 IRSNGFELAGTRYVTIRADDRSVY-GKKGSAGVITVKTSKAILIGVYNEKIQPGTAANVV 113
Query: 122 ERLGDYLIDQGL 133
E+L DYLI QG
Sbjct: 114 EKLADYLIGQGF 125
>pdb|1PRQ|A Chain A, Acanthamoeba Castellanii Profilin Ia
pdb|2PRF|A Chain A, Three Dimensional Solution Structure Of Acanthamoeba
Profilin I
Length = 125
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 2 SWQTYVDDHLMCDIDGQGQHLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPGH 61
SWQTYVD +L+ G G ++ +AI+G DG+ WA SA F P + + F+
Sbjct: 1 SWQTYVDTNLV----GTGA-VTQAAILGLDGNTWATSAGFA-VTPAQGQTLASAFNNADP 54
Query: 62 LAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMIV 121
+ +G L G Y+ ++ + + I GKKGS GV KT ++++ G+Y E + PG +V
Sbjct: 55 IRASGFDLAGVHYVTLRADDRS-IYGKKGSAGVITVKTSKSILVGVYNEKIQPGTAANVV 113
Query: 122 ERLGDYLIDQGL 133
E+L DYLI QG
Sbjct: 114 EKLADYLIGQGF 125
>pdb|1ACF|A Chain A, Acanthamoeba Castellanii Profilin Ib
Length = 125
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 2 SWQTYVDDHLMCDIDGQGQHLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPGH 61
SWQTYVD +L+ G G ++ +AI+G DG+ WA SA F P + + F+
Sbjct: 1 SWQTYVDTNLV----GTGA-VTQAAILGLDGNTWATSAGFA-VTPAQGTTLAGAFNNADA 54
Query: 62 LAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMIV 121
+ G L G Y+ ++ + + I GKKGS GV KT +A++ G+Y E + PG +V
Sbjct: 55 IRAGGFDLAGVHYVTLRADDRS-IYGKKGSSGVITVKTSKAILVGVYNEKIQPGTAANVV 113
Query: 122 ERLGDYLIDQGL 133
E+L DYLI QG
Sbjct: 114 EKLADYLIGQGF 125
>pdb|3D9Y|A Chain A, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3D9Y|B Chain B, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3DAV|A Chain A, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
pdb|3DAV|B Chain B, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
Length = 127
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 1 MSWQTYVDDHLMCDIDGQGQHLSASAIVGHDG-SVWAQSANFPKFKPEEIAGIMKDFDQP 59
MSWQ YVD L+ G G+ + +AIV G SVWA SA F P+EI G+ F P
Sbjct: 1 MSWQAYVDTSLL----GTGK-IDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDP 54
Query: 60 GHLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNM 119
+ TG+ L G KY+ I+ E G I GK G+ T ++ Y E PG+
Sbjct: 55 PSMFGTGIILAGQKYITIRAE-GRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAK 113
Query: 120 IVERLGDYLIDQG 132
I E L DYL+ G
Sbjct: 114 ITEALADYLVGVG 126
>pdb|1YPR|A Chain A, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1YPR|B Chain B, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1K0K|A Chain A, Yeast Profilin, Cubic Crystal Form
Length = 125
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 2 SWQTYVDDHLMCDIDGQGQHLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPGH 61
SWQ Y D+ + G G+ A +VWA S +P EI I++ FD P
Sbjct: 1 SWQAYTDNLI-----GTGKVDKAVIYSRAGDAVWATSGGL-SLQPNEIGEIVQGFDNPAG 54
Query: 62 LAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMIV 121
L GLH+ G K+M+++ + + I G+ + GV +T Q ++ Y V G+ IV
Sbjct: 55 LQSNGLHIQGQKFMLLRADDRS-IYGRHDAEGVVCVRTKQTVIIAHYPPTVQAGEATKIV 113
Query: 122 ERLGDYLI 129
E+L DYLI
Sbjct: 114 EQLADYLI 121
>pdb|2VK3|A Chain A, Crystal Structure Of Rat Profilin 2a
Length = 142
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 3 WQTYVDDHLMCDIDGQGQHLSASAIVGHDGS--VWAQSAN--FPKFKPEEIAGIMKDFDQ 58
WQ+YVD +LMCD G Q +AIVG+ + VWA +A F P EI I+ D+
Sbjct: 6 WQSYVD-NLMCD--GCCQE---AAIVGYCDAKYVWAATAGGVFQSITPAEIDVIIGK-DR 58
Query: 59 PGHLAPTGLHLGGTKYMVIQ------GEAGAVIRGKKGSG----GVTIKKTGQALVFGIY 108
G GL LGG K VI+ + IR K G V + + G+ LVF +
Sbjct: 59 EGFF-TNGLTLGGKKCSVIRDSLYVDSDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMG 117
Query: 109 EEPVTPGQCNMIVERLGDYLIDQGL 133
+E V G N + YL D G
Sbjct: 118 KEGVHGGGLNKKAYSMAKYLRDSGF 142
>pdb|2V8F|A Chain A, Mouse Profilin Iia In Complex With A Double Repeat From
The Fh1 Domain Of Mdia1
pdb|2V8F|B Chain B, Mouse Profilin Iia In Complex With A Double Repeat From
The Fh1 Domain Of Mdia1
Length = 140
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 3 WQTYVDDHLMCDIDGQGQHLSASAIVGHDGS--VWAQSAN--FPKFKPEEIAGIMKDFDQ 58
WQ+YVD +LMCD G Q +AIVG+ + VWA +A F P EI I+ D+
Sbjct: 4 WQSYVD-NLMCD--GCXQE---AAIVGYCDAKYVWAATAGGVFQSITPVEIDMIVGK-DR 56
Query: 59 PGHLAPTGLHLGGTKYMVIQ------GEAGAVIRGKKGSG----GVTIKKTGQALVFGIY 108
G GL LG K VI+ G+ IR K G V + + G+ LVF +
Sbjct: 57 EGFF-TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMG 115
Query: 109 EEPVTPGQCNMIVERLGDYLIDQGL 133
+E V G N + YL D G
Sbjct: 116 KEGVHGGGLNKKAYSMAKYLRDSGF 140
>pdb|2V8C|A Chain A, Mouse Profilin Iia In Complex With The Proline-Rich Domain
Of Vasp
Length = 140
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 3 WQTYVDDHLMCDIDGQGQHLSASAIVGHDGS--VWAQSAN--FPKFKPEEIAGIMKDFDQ 58
WQ+YVD +LMCD G Q +AIVG+ + VWA +A F P EI I+ D+
Sbjct: 4 WQSYVD-NLMCD--GCCQE---AAIVGYCDAKYVWAATAGGVFQSITPVEIDMIVGK-DR 56
Query: 59 PGHLAPTGLHLGGTKYMVIQ------GEAGAVIRGKKGSG----GVTIKKTGQALVFGIY 108
G GL LG K VI+ G+ IR K G V + + G+ LVF +
Sbjct: 57 EGFF-TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMG 115
Query: 109 EEPVTPGQCNMIVERLGDYLIDQGL 133
+E V G N + YL D G
Sbjct: 116 KEGVHGGGLNKKAYSMAKYLRDSGF 140
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 52 IMKDFDQPGHLAPTG-LHLGGTKYMVIQGEAGAVIRGKKGSGGVTIKKTGQALVFGIYEE 110
I +F+ +P G + + I+ +AG ++GKKG VTI K+ + ++
Sbjct: 30 ITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDA 89
Query: 111 PVTPG 115
+ PG
Sbjct: 90 LLLPG 94
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 15 IDGQGQHLSASAIVGHDGSVWAQSANF-PKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTK 73
I G G+ A + GH S W + N+ P+ E +A ++++ PG G+ LGG
Sbjct: 101 IVGLGEPALAVDLPGHGHSAWREDGNYSPQLNSETLAPVLREL-APGAEFVVGMSLGGLT 159
Query: 74 YMVIQGEA 81
+ + A
Sbjct: 160 AIRLAAMA 167
>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1128
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 26 AIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPGHLAPTGL 67
A V H GS+ + F + +E+A ++ DQPG L P L
Sbjct: 330 AAVSHAGSMHRERRKFLRSALKELATVLS--DQPGLLGPKAL 369
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 45 KPEEIAGIMKDFDQPGHLAPTGLHLGG-----TKYMVIQGEAGAVIRGKKGSGGVTIKKT 99
KPE +G + PGH AP ++LG Y IQ + ++R G + +
Sbjct: 176 KPERYSGDNIIYKPPGHSAPDXVYLGAXTNFDVTYNWIQDKCVPLVREITFENGEELTEE 235
Query: 100 G 100
G
Sbjct: 236 G 236
>pdb|3NEC|A Chain A, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|B Chain B, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|C Chain C, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|D Chain D, Crystal Structure Of Toxoplasma Gondii Profilin
Length = 166
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 63 APTGLHLGGTKYMVIQGEAG--------AVIRGKKGSGGVTIKKTGQ-ALVFGIYEE 110
AP G+ +GG KY V++ E G + + GG + KT ++V +Y+E
Sbjct: 85 APNGVWIGGQKYKVVRPEKGFEYNDCTFDITXCARSKGGAHLIKTPNGSIVIALYDE 141
>pdb|2JKF|A Chain A, Plasmodium Falciparum Profilin
pdb|2JKG|A Chain A, Plasmodium Falciparum Profilin
Length = 179
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 33/114 (28%)
Query: 2 SWQTYVDDHLMCDIDGQGQHLSASAIVGHDGSVWAQSA-------NFPK---FKPEEIAG 51
SW +Y++D L+ G L++ DG V+A A NF K F E+
Sbjct: 6 SWDSYLNDRLLATNQVSGAGLASE----EDGVVYACVAQGEESDPNFDKWSLFYKEDYDI 61
Query: 52 IMKDFD------------------QPGHLAPTGLHLGGTKYMVIQGEAGAVIRG 87
++D + G+ AP G+ LGGTKY I E G
Sbjct: 62 EVEDENGTKTTKTINEGQTILVVFNEGY-APDGVWLGGTKYQFINIERDLEFEG 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,761,713
Number of Sequences: 62578
Number of extensions: 198554
Number of successful extensions: 378
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 29
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)