Query 032811
Match_columns 133
No_of_seqs 103 out of 432
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d9y_A Profilin; yeast, actin- 100.0 9.1E-51 3.1E-55 282.5 13.9 126 1-133 1-127 (127)
2 3nul_A Profilin I; cytoskeleto 100.0 2.8E-49 9.6E-54 276.0 17.3 130 2-133 1-130 (130)
3 1acf_A Profilin I; protein bin 100.0 2.3E-48 7.8E-53 269.7 13.9 125 2-133 1-125 (125)
4 1ypr_A Profilin; actin-binding 100.0 3.3E-48 1.1E-52 269.0 14.3 124 2-133 1-125 (125)
5 2v8f_A Profilin-2, profilin II 100.0 5.5E-46 1.9E-50 262.1 14.3 125 1-133 1-140 (140)
6 3nec_A Profilin, inflammatory 100.0 8.1E-45 2.8E-49 262.2 10.2 126 1-133 4-166 (166)
7 2pbd_P Profilin-1, profilin I; 100.0 1.5E-43 5.3E-48 249.4 14.5 124 2-133 1-139 (139)
8 2jkg_A Profilin; proline-rich 100.0 1.8E-44 6E-49 260.7 9.6 126 1-133 5-171 (179)
9 3leq_A Uncharacterized protein 94.9 0.2 6.9E-06 33.6 8.3 97 21-127 18-115 (126)
10 1vet_B P14, late endosomal/lys 93.3 0.39 1.3E-05 32.1 7.1 95 21-130 18-117 (125)
11 1j3w_A Giding PROTEIN-MGLB; gl 91.1 0.83 2.8E-05 32.0 6.9 98 21-130 28-135 (163)
12 3kye_A Roadblock/LC7 domain, R 79.4 1.8 6.3E-05 29.9 3.5 98 21-128 40-138 (150)
13 3t12_B Gliding protein MGLB; G 56.2 23 0.0008 23.7 5.1 99 21-130 25-132 (136)
14 4g29_A Secreted effector prote 44.1 17 0.00058 25.8 2.9 21 113-133 38-58 (186)
15 3rfo_A Methionyl-tRNA formyltr 42.7 84 0.0029 23.8 6.9 37 40-80 216-252 (317)
16 3q0i_A Methionyl-tRNA formyltr 42.2 83 0.0028 23.9 6.8 37 40-80 219-255 (318)
17 2jmk_A Hypothetical protein TA 40.8 53 0.0018 20.9 4.5 38 93-133 67-105 (111)
18 2c71_A Glycoside hydrolase, fa 38.4 43 0.0015 23.6 4.4 31 102-133 150-180 (216)
19 3tqq_A Methionyl-tRNA formyltr 36.6 1.1E+02 0.0038 23.1 6.7 37 40-80 214-250 (314)
20 2bln_A Protein YFBG; transfera 34.4 1.1E+02 0.0038 22.9 6.4 38 40-80 209-246 (305)
21 2z8u_A Tata-box-binding protei 34.0 64 0.0022 22.8 4.7 36 94-133 61-96 (188)
22 1p3h_A 10 kDa chaperonin; beta 33.4 25 0.00086 22.4 2.2 18 63-80 74-91 (99)
23 1pcq_O Groes protein; chaperon 32.8 26 0.0009 22.2 2.2 18 63-80 72-89 (97)
24 3eik_A Tata-box-binding protei 32.8 67 0.0023 23.3 4.7 36 94-133 91-126 (218)
25 3nx6_A 10KDA chaperonin; bacte 32.1 37 0.0013 21.4 2.8 18 63-80 71-88 (95)
26 2cc0_A Acetyl-xylan esterase; 28.5 60 0.002 22.3 3.7 19 115-133 159-177 (195)
27 1fmt_A Methionyl-tRNA FMet for 27.4 1.6E+02 0.0056 22.1 6.3 37 40-80 215-251 (314)
28 2eap_A Lymphocyte cytosolic pr 27.2 20 0.00068 22.6 0.9 12 122-133 25-36 (90)
29 1mp9_A Tata-binding protein; t 27.1 1.4E+02 0.0049 21.1 5.5 21 113-133 76-96 (198)
30 1ais_A TBP, protein (tata-bind 27.1 1E+02 0.0035 21.5 4.7 36 94-133 57-92 (182)
31 2e5z_A SFRS8 protein, splicing 26.2 44 0.0015 20.9 2.3 20 113-132 20-39 (90)
32 1ytb_A Protein (tata binding p 25.9 1.1E+02 0.0038 21.4 4.7 36 94-133 53-88 (180)
33 1we3_O CPN10(groes); chaperoni 25.7 35 0.0012 21.8 1.8 18 63-80 76-93 (100)
34 2d0s_A Cytochrome C, cytochrom 25.6 55 0.0019 18.5 2.7 20 39-58 58-77 (79)
35 2w3z_A Putative deacetylase; P 24.8 1.2E+02 0.0042 22.7 5.1 31 102-133 275-305 (311)
36 4evm_A Thioredoxin family prot 23.8 1E+02 0.0035 18.4 3.9 34 21-56 104-137 (138)
37 2wj8_A Nucleoprotein; RNA bind 23.8 25 0.00085 27.3 1.0 29 104-132 333-361 (391)
38 4gxt_A A conserved functionall 23.7 67 0.0023 25.0 3.5 32 24-56 41-84 (385)
39 2k49_A UPF0339 protein SO_3888 23.2 1.6E+02 0.0055 19.1 5.4 49 30-80 22-73 (118)
40 1zgh_A Methionyl-tRNA formyltr 21.9 2.4E+02 0.0083 20.7 6.5 38 40-80 203-241 (260)
41 2lqc_B Voltage-dependent L-typ 26.8 20 0.00068 17.0 0.0 8 1-8 6-13 (26)
42 1fx0_A ATP synthase alpha chai 21.1 82 0.0028 25.8 3.6 34 100-133 221-255 (507)
43 1x4o_A Splicing factor 4; stru 20.6 95 0.0033 18.5 3.1 17 116-132 16-32 (78)
44 1rm1_A Tata-box binding protei 20.2 2.6E+02 0.0089 20.4 6.1 43 91-133 99-148 (240)
No 1
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=100.00 E-value=9.1e-51 Score=282.51 Aligned_cols=126 Identities=40% Similarity=0.728 Sum_probs=122.3
Q ss_pred CChHHHhhhhhcccccCCccccceEEEEecCC-CEEEEcCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEe
Q 032811 1 MSWQTYVDDHLMCDIDGQGQHLSASAIVGHDG-SVWAQSANFPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMVIQG 79 (133)
Q Consensus 1 MSW~~yv~~~L~~~~~~~g~~~~~aaI~g~dG-~~wA~s~~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~ 79 (133)
||||+|||++|++ +| +|++|||+|+|| ++||+|++| +++|+|++.|++.|+||+.++.+||+|+|+||+++|.
T Consensus 1 MSWq~Yvd~~L~~----~~-~~~~aAI~g~dG~svwA~s~gf-~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~vir~ 74 (127)
T 3d9y_A 1 MSWQAYVDTSLLG----TG-KIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRA 74 (127)
T ss_dssp -CHHHHHHTTTGG----GS-SCCEEEEEETTSSCEEEECTTC-CCCHHHHHHHHHHHHSTTHHHHHCEEETTEEEEEEEE
T ss_pred CCHHHHHHHhhcc----cC-ceeeEEEEeCCCCeEEEeCCCC-ccCHHHHHHHHHHhcCcchhhcCCEEEcCeEEEEEEe
Confidence 9999999989999 88 999999999999 799999999 9999999999999999988889999999999999999
Q ss_pred CCCceEEEecCCCcEEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 80 EAGAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 80 d~~~~i~~kk~~~G~~i~kt~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
| +++|++||+++|++++||+++||||+|+++++|++|+++||+|||||+++||
T Consensus 75 d-~~~i~~kkg~~Gv~i~kT~~aivi~~y~e~~~~g~~~~~ve~ladYL~~~Gy 127 (127)
T 3d9y_A 75 E-GRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127 (127)
T ss_dssp C-SSEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred C-cceEEEEcCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9 8999999999999999999999999999999999999999999999999998
No 2
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=100.00 E-value=2.8e-49 Score=275.98 Aligned_cols=130 Identities=76% Similarity=1.333 Sum_probs=123.9
Q ss_pred ChHHHhhhhhcccccCCccccceEEEEecCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCC
Q 032811 2 SWQTYVDDHLMCDIDGQGQHLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMVIQGEA 81 (133)
Q Consensus 2 SW~~yv~~~L~~~~~~~g~~~~~aaI~g~dG~~wA~s~~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~d~ 81 (133)
|||+|||++|+++. +|++|++|||+|+||++||+|++|++++|+|++.|++.|+||+.++.+||+|+|+||+++|.|+
T Consensus 1 SWq~YVd~~L~~~~--~g~~~~~aAIig~dGsvWA~s~gf~~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~~ir~d~ 78 (130)
T 3nul_A 1 SWQSYVDDHLMCDV--EGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQ 78 (130)
T ss_dssp CHHHHHHHTTSCCB--TTBCCSEEEEEETTSCEEEECTTCCCCCHHHHHHHHHHHHSTTSSTTTCEEETTEEEEEEEEET
T ss_pred CHHHHHHhhhcccc--cCCcEeeEEEEeCCCCEEEcCCCcccCCHHHHHHHHHhccCchhhccCCEEECCeEEEEEEeCC
Confidence 89999998899854 3249999999999999999999999999999999999999999999999999999999999986
Q ss_pred CceEEEecCCCcEEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 82 GAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 82 ~~~i~~kk~~~G~~i~kt~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
+++||+||+++|++++||+++||||+|+++++|++|+++||+|||||+++||
T Consensus 79 ~~~i~~kkg~~Gv~i~kT~~aivig~y~e~~~~g~~~~~ve~ladYL~~~GY 130 (130)
T 3nul_A 79 GAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIESEL 130 (130)
T ss_dssp TTEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEecCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999999999999999999999999998
No 3
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=100.00 E-value=2.3e-48 Score=269.73 Aligned_cols=125 Identities=40% Similarity=0.773 Sum_probs=122.3
Q ss_pred ChHHHhhhhhcccccCCccccceEEEEecCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCC
Q 032811 2 SWQTYVDDHLMCDIDGQGQHLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMVIQGEA 81 (133)
Q Consensus 2 SW~~yv~~~L~~~~~~~g~~~~~aaI~g~dG~~wA~s~~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~d~ 81 (133)
|||+|||++|++ +| ++++|||+|+||++||+|++| +++|+|++.|+++|+||+.++.+||+|+|+||+++|.|
T Consensus 1 SWq~yvd~~L~~----~g-~~~~aAIig~dGsvwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~i~~d- 73 (125)
T 1acf_A 1 SWQTYVDTNLVG----TG-AVTQAAILGLDGNTWATSAGF-AVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRAD- 73 (125)
T ss_dssp CHHHHHHTTTGG----GT-SCSEEEEEETTSCEEEECTTC-CCCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEES-
T ss_pred ChHHHHHhhhhh----CC-CcceEEEEcCCCCEEEecCCC-ccCHHHHHHHHHHhcCcchhhcCCeEECCEEEEEEEec-
Confidence 899999988999 88 999999999999999999999 99999999999999999888899999999999999999
Q ss_pred CceEEEecCCCcEEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 82 GAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 82 ~~~i~~kk~~~G~~i~kt~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
+++|++|++++|++++||+++||||+|+++++|++|+++||+|||||+++||
T Consensus 74 ~~~i~~kk~~~Gv~i~kT~~aivI~~y~~~~~~g~~~~~ve~ladyL~~~gy 125 (125)
T 1acf_A 74 DRSIYGKKGSSGVITVKTSKAILVGVYNEKIQPGTAANVVEKLADYLIGQGF 125 (125)
T ss_dssp SSEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred CcEEEeecCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999999999999999999999998
No 4
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=100.00 E-value=3.3e-48 Score=268.95 Aligned_cols=124 Identities=35% Similarity=0.716 Sum_probs=121.3
Q ss_pred ChHHHhhhhhcccccCCccccceEEEEecCC-CEEEEcCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeC
Q 032811 2 SWQTYVDDHLMCDIDGQGQHLSASAIVGHDG-SVWAQSANFPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 2 SW~~yv~~~L~~~~~~~g~~~~~aaI~g~dG-~~wA~s~~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~d 80 (133)
|||+|||+ |++ +| ++++|||+|+|| ++||+|++| +++|+|++.|+++|+||+.++.+||+|+|+||+++|.|
T Consensus 1 SWq~yvd~-L~~----~g-~~~~aAI~g~DG~svwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gl~l~G~KY~~i~~d 73 (125)
T 1ypr_A 1 SWQAYTDN-LIG----TG-KVDKAVIYSRAGDAVWATSGGL-SLQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRAD 73 (125)
T ss_dssp CHHHHHHH-HHH----TS-SCSEEEEEETTSCCEEEEESCC-CCCHHHHHHHHHHTTCTHHHHHHCEEETTEEEEEEEEC
T ss_pred ChHHHHHH-Hhc----CC-CccEEEEEeCCCCcEEEECCCC-ccCHHHHHHHHHhccCcchhccCCeEECCEEEEEEecC
Confidence 89999996 999 88 999999999999 999999999 99999999999999999888899999999999999999
Q ss_pred CCceEEEecCCCcEEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 81 AGAVIRGKKGSGGVTIKKTGQALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 81 ~~~~i~~kk~~~G~~i~kt~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
+++|++|++++|++++||+++||||+|+++++|++|+++|++|||||+++||
T Consensus 74 -~~~i~~kk~~~Gi~i~kT~~aivI~~y~e~~~~g~~~~~ve~ladYL~~~gy 125 (125)
T 1ypr_A 74 -DRSIYGRHDAEGVVCVRTKQTVIIAHYPPTVQAGEATKIVEQLADYLIGVQY 125 (125)
T ss_dssp -SSEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred -CcEEEEecCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999999999999999999999998
No 5
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=100.00 E-value=5.5e-46 Score=262.13 Aligned_cols=125 Identities=38% Similarity=0.626 Sum_probs=119.6
Q ss_pred CC-hHHHhhhhhcccccCCccccceEEEEecCC--CEEEEcCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEE
Q 032811 1 MS-WQTYVDDHLMCDIDGQGQHLSASAIVGHDG--SVWAQSAN--FPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYM 75 (133)
Q Consensus 1 MS-W~~yv~~~L~~~~~~~g~~~~~aaI~g~dG--~~wA~s~~--f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~ 75 (133)
|| ||+|||+ |++ +| +|++|||+|+|| ++||+|++ |++++|+|++.|+ . +||+.++.+||+|+|+||+
T Consensus 1 MS~Wq~yvd~-L~~----~g-~v~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~l~G~Ky~ 72 (140)
T 2v8f_A 1 MAGWQSYVDN-LMC----DG-CCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIV-G-KDREGFFTNGLTLGAKKCS 72 (140)
T ss_dssp -CTTHHHHHH-HHT----TS-CEEEEEEEECSSSCSEEEECTTSSGGGCCHHHHHHHH-S-SCSSHHHHHCEEETTEEEE
T ss_pred CchHHHHHHH-Hhc----cC-CcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-CCccccccCCeEECCEEEE
Confidence 99 9999996 999 88 999999999999 99999999 9899999999999 7 8888888999999999999
Q ss_pred EEEe----CCCce--EEEecCCCc----EEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 76 VIQG----EAGAV--IRGKKGSGG----VTIKKTGQALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 76 ~~r~----d~~~~--i~~kk~~~G----~~i~kt~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
++|. |++++ |++|++++| ++++||+++|||++|+++++|++|+++|++|||||+++||
T Consensus 73 ~ir~~l~~d~~~~~di~~kk~~~G~~~~v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 140 (140)
T 2v8f_A 73 VIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLRDSGF 140 (140)
T ss_dssp EEEEETTSTTTCEEEEEECCCSSSCCCEEEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEecccccCCCceEEEEEecCCCCCceeEEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999 76788 999999999 9999999999999999999999999999999999999998
No 6
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=100.00 E-value=8.1e-45 Score=262.24 Aligned_cols=126 Identities=30% Similarity=0.516 Sum_probs=118.0
Q ss_pred CC-hHHHhhhhhcccccCCccccceEEEEe-cCCCEEEEcCCC------------------------CCCCHHHHHHHHH
Q 032811 1 MS-WQTYVDDHLMCDIDGQGQHLSASAIVG-HDGSVWAQSANF------------------------PKFKPEEIAGIMK 54 (133)
Q Consensus 1 MS-W~~yv~~~L~~~~~~~g~~~~~aaI~g-~dG~~wA~s~~f------------------------~~~~~~E~~~l~~ 54 (133)
|| ||+|||++|++ +| +|++|||+| +||++||+|++| ++++|+|+++|++
T Consensus 4 MS~Wq~YVd~~L~~----~g-~v~~AAI~g~~DG~vWA~s~~~~~~w~~~~~~~y~~~v~~~~g~~~~~~~~~E~~~i~~ 78 (166)
T 3nec_A 4 MSDWDPVVKEWLVD----TG-YCCAGGIANAEDGVVFAAAADDDDGWSKLYKDDHEEDTIGEDGNACGKVSINEASTIKA 78 (166)
T ss_dssp -CCCHHHHHHHHTT----TS-SCSEEEEEETTTCCEEEEEETTSCHHHHHCCCCEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred ccHHHHHHHHHhhc----cC-ceeEEEEEecCCCCEEeecCCCCcccccccccccccccccccccccccCCHHHHHHHHH
Confidence 99 99999988999 88 999999999 699999999998 3679999999999
Q ss_pred hcCCCCCCCccceEEcCeEEEEEEeCCC--------ceEEEecCCCcEEEEecCc-EEEEEEeCCC--CCcchHHHHHHH
Q 032811 55 DFDQPGHLAPTGLHLGGTKYMVIQGEAG--------AVIRGKKGSGGVTIKKTGQ-ALVFGIYEEP--VTPGQCNMIVER 123 (133)
Q Consensus 55 ~f~~~~~~~~~Gi~i~g~KY~~~r~d~~--------~~i~~kk~~~G~~i~kt~~-~iVI~~~~~~--~~~~~~~~~v~~ 123 (133)
.|++. ++++||+|+|+||+++|.|++ +++++||+++|++++||++ +|||++|+++ ++|++|+++|++
T Consensus 79 ~f~~~--~~~~Gl~lgG~KY~~ir~d~~~~~~~~~~~~i~~kK~~~Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~ 156 (166)
T 3nec_A 79 AVDDG--SAPNGVWIGGQKYKVVRPEKGFEYNDCTFDITMCARSKGGAHLIKTPNGSIVIALYDEEKEQDKGNSRTSALA 156 (166)
T ss_dssp HHHHS--CCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHH
T ss_pred HhhcC--CccCCeEEeCeEEEEEEecCCccccccceeEEEeccCCceEEEEEeCCCEEEEEEccCCCccCHHHHHHHHHH
Confidence 99884 478999999999999999854 6799999999999999999 9999999999 899999999999
Q ss_pred HHHHHHhCCC
Q 032811 124 LGDYLIDQGL 133 (133)
Q Consensus 124 lA~yL~~~Gy 133 (133)
|||||+++||
T Consensus 157 ladYL~~~GY 166 (166)
T 3nec_A 157 FAEYLHQSGY 166 (166)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999999998
No 7
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=100.00 E-value=1.5e-43 Score=249.42 Aligned_cols=124 Identities=31% Similarity=0.513 Sum_probs=118.7
Q ss_pred C-hHHHhhhhhcccccCCccccceEEEEecCC--CEEEEcCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEE
Q 032811 2 S-WQTYVDDHLMCDIDGQGQHLSASAIVGHDG--SVWAQSAN--FPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMV 76 (133)
Q Consensus 2 S-W~~yv~~~L~~~~~~~g~~~~~aaI~g~dG--~~wA~s~~--f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~ 76 (133)
| ||+|||+ |++ +| +|++|||+|+|| ++||+|++ |++++|+|++.|+ . +||+.++.+||+|+|+||++
T Consensus 1 s~Wq~Yvd~-L~~----~g-~~~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~lgG~Ky~~ 72 (139)
T 2pbd_P 1 AGWNAYIDN-LMA----DG-TCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLV-G-KDRSSFYVNGLTLGGQKCSV 72 (139)
T ss_dssp CCSHHHHHH-HHT----TS-CEEEEEEEESSSSCEEEEECTTSSGGGCCHHHHHHHH-S-SCCSTHHHHCEEETTEEEEE
T ss_pred CchHHHHHH-Hhc----cC-CcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-cCcccccccCeEECCEEEEE
Confidence 5 9999996 999 88 999999999999 99999999 9899999999999 6 78888889999999999999
Q ss_pred EEe----CCCceE--EEecCCCc----EEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 77 IQG----EAGAVI--RGKKGSGG----VTIKKTGQALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 77 ~r~----d~~~~i--~~kk~~~G----~~i~kt~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
+|. |++++| ++|++++| ++++||+++|||++|+++++|++|+++|++|||||+++||
T Consensus 73 ir~~~~~d~~~~id~~~kk~~~G~~~~v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 139 (139)
T 2pbd_P 73 IRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY 139 (139)
T ss_dssp EEEETTCTTTCEEEEEECCSTTCCCCEEEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EecccccCCCcEEeeeeccCCCCCceEEEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999 757888 99999999 9999999999999999999999999999999999999998
No 8
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=100.00 E-value=1.8e-44 Score=260.67 Aligned_cols=126 Identities=28% Similarity=0.505 Sum_probs=118.4
Q ss_pred CChHHHhhhhhcccccCCccccceEEEEec-CCCEEEEcC------------------CCC-CC----------CHHHHH
Q 032811 1 MSWQTYVDDHLMCDIDGQGQHLSASAIVGH-DGSVWAQSA------------------NFP-KF----------KPEEIA 50 (133)
Q Consensus 1 MSW~~yv~~~L~~~~~~~g~~~~~aaI~g~-dG~~wA~s~------------------~f~-~~----------~~~E~~ 50 (133)
||||+|||++|++ +| +|+.|||+++ ||++||+|+ +|+ ++ +|+|++
T Consensus 5 mSWq~YVd~~Ll~----tG-~v~~AaI~g~~DG~vwA~s~~~~e~~~~~~~w~~~~k~~f~~~v~~e~g~~~~~~~~E~~ 79 (179)
T 2jkg_A 5 YSWDSYLNDRLLA----TN-QVSGAGLASEEDGVVYACVAQGEESDPNFDKWSLFYKEDYDIEVEDENGTKTTKTINEGQ 79 (179)
T ss_dssp CCHHHHHHHHTGG----GS-SCSEEEEEETTTCCEEEEEESSCTTSTTCCGGGGTCCCCEEEEEECTTCCEEEEEECHHH
T ss_pred ccHHHHHHHhhhh----cC-CEehheeecccCCCEEEecCccccccccccchhhhccCCchhhhccccCccccCCHHHHH
Confidence 9999999989999 99 9999999999 999999999 785 57 899999
Q ss_pred HHHHhcCCCCCCCccceEEcCeEEEEEEeCCC--------ceEEEecCCCcEEEEec-CcEEEEEEeCCC--CCcchHHH
Q 032811 51 GIMKDFDQPGHLAPTGLHLGGTKYMVIQGEAG--------AVIRGKKGSGGVTIKKT-GQALVFGIYEEP--VTPGQCNM 119 (133)
Q Consensus 51 ~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~d~~--------~~i~~kk~~~G~~i~kt-~~~iVI~~~~~~--~~~~~~~~ 119 (133)
+|+++|++ .++++||+|+|+||+++|.|++ +++++||+++|++++|| +++||||+|+++ ++|++|++
T Consensus 80 ~I~~~f~~--~~~~~Gv~lgG~KY~~i~~d~d~~~~~~~~~~i~gkKgkgGv~ivKT~~qaiVIg~YdE~k~~~~g~c~~ 157 (179)
T 2jkg_A 80 TILVVFNE--GYAPDGVWLGGTKYQFINIERDLEFEGYNFDVATCAKLKGGLHLVKVPGGNILVVLYDEEKEQDRGNSKI 157 (179)
T ss_dssp HHHHHHHH--SCCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEETTTEEEEEEEEGGGTCCHHHHHH
T ss_pred HHHHHHhc--CCCCCCEEECCEEEEEEEecCCccccCcceeEEEEecCCCcEEEEEECCCeEEEEEecCCCCcChHHHHH
Confidence 99999977 4678999999999999999977 78999999999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCC
Q 032811 120 IVERLGDYLIDQGL 133 (133)
Q Consensus 120 ~v~~lA~yL~~~Gy 133 (133)
+|++|||||+++||
T Consensus 158 ~ve~LadYL~~~Gy 171 (179)
T 2jkg_A 158 AALTFAKELAESSQ 171 (179)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCc
Confidence 99999999999997
No 9
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=94.92 E-value=0.2 Score=33.55 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=51.5
Q ss_pred ccceEEEEecCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCCCceEEEecCCCcEEEEecC
Q 032811 21 HLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVTIKKTG 100 (133)
Q Consensus 21 ~~~~aaI~g~dG~~wA~s~~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~d~~~~i~~kk~~~G~~i~kt~ 100 (133)
.+.+|++++.||-+.+++.+.+...++-+..+...+-.-......-+..+..+-++++.+ +..++ +....
T Consensus 18 gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~-~G~l~---------v~~ag 87 (126)
T 3leq_A 18 EVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMG-KGYLI---------LTAAG 87 (126)
T ss_dssp TEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECS-SCEEE---------EEESS
T ss_pred CceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeC-CCEEE---------EEEeC
Confidence 799999999999999988665222344455555544321111222344566677777777 33322 22222
Q ss_pred -cEEEEEEeCCCCCcchHHHHHHHHHHH
Q 032811 101 -QALVFGIYEEPVTPGQCNMIVERLGDY 127 (133)
Q Consensus 101 -~~iVI~~~~~~~~~~~~~~~v~~lA~y 127 (133)
.+++....+.+.+.|.....+.++++.
T Consensus 88 ~~a~L~vla~~~a~lG~v~~em~~~v~r 115 (126)
T 3leq_A 88 PGAHLVVLTRQGADVGVVAYQMNMLVKK 115 (126)
T ss_dssp TTEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 366667778888877655444444433
No 10
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=93.27 E-value=0.39 Score=32.13 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=65.7
Q ss_pred ccceEEEEecCCCEEEEcCCCCCCCHHHHHHHHHhcCC---C--CCCCccceEEcCeEEEEEEeCCCceEEEecCCCcEE
Q 032811 21 HLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQ---P--GHLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVT 95 (133)
Q Consensus 21 ~~~~aaI~g~dG~~wA~s~~f~~~~~~E~~~l~~~f~~---~--~~~~~~Gi~i~g~KY~~~r~d~~~~i~~kk~~~G~~ 95 (133)
.+.++++++.||-+-|++.+ +....+-+..+...+-. . ... +.-++.+.+++..+ +..++
T Consensus 18 gv~~a~lvs~DGllia~s~~-~~~dae~laAias~~~sl~~~~~~~~----~~~g~~~q~~ve~~-~G~l~--------- 82 (125)
T 1vet_B 18 GVQSTLLLNNEGSLLAYSGY-GDTDARVTAAIASNIWAAYDRNGNQA----FNEDSLKFILMDCM-EGRVA--------- 82 (125)
T ss_dssp TEEEEEEECTTCCEEEEEEC-CSSCHHHHHHHHHHHHHHHHHHHCCT----TTCCCCCEEEEEET-TEEEE---------
T ss_pred CceEEEEECCCCCeEEecCC-CCccHHHHHHHHHHHHHHHHHHHHHh----cCCCCcEEEEEEeC-CCEEE---------
Confidence 79999999999999888755 35667777777765521 0 001 11255667777777 33322
Q ss_pred EEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHh
Q 032811 96 IKKTGQALVFGIYEEPVTPGQCNMIVERLGDYLID 130 (133)
Q Consensus 96 i~kt~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~ 130 (133)
+.....+++....+...+.|....-+.++++||.+
T Consensus 83 i~~a~~a~L~Vla~~~a~lGlv~~~m~~lv~~L~~ 117 (125)
T 1vet_B 83 ITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEE 117 (125)
T ss_dssp EEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHC
T ss_pred EEEcCCeEEEEEeCCCCChHHHHHHHHHHHHHHhh
Confidence 22224677888888889999999999999999864
No 11
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=91.10 E-value=0.83 Score=31.96 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=56.5
Q ss_pred ccceEEEEecCCCEEEE-----cCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCCCceEEEecCCCcEE
Q 032811 21 HLSASAIVGHDGSVWAQ-----SANFPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVT 95 (133)
Q Consensus 21 ~~~~aaI~g~dG~~wA~-----s~~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~d~~~~i~~kk~~~G~~ 95 (133)
.+.+|++++.||-+-++ +... . ..+-+..+...+-.-......-+.-++.+-++++.+ +.. ++
T Consensus 28 Gv~~avlvs~DGl~ia~~~~~~~~~~-~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~-~g~---------l~ 95 (163)
T 1j3w_A 28 GARYALLIDRKGFVLAHKEALWAPKP-P-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGE-RMG---------LY 95 (163)
T ss_dssp CCSEEEEEETTSCEEEEEECTTSCCC-S-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECS-SCE---------EE
T ss_pred CceEEEEEcCCCCEEEeecccccCCC-C-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeC-CcE---------EE
Confidence 68899999999999998 6666 4 666666655543211100111111233444455555 222 23
Q ss_pred EEec-CcEEEEEEeCCCCCcchH----HHHHHHHHHHHHh
Q 032811 96 IKKT-GQALVFGIYEEPVTPGQC----NMIVERLGDYLID 130 (133)
Q Consensus 96 i~kt-~~~iVI~~~~~~~~~~~~----~~~v~~lA~yL~~ 130 (133)
+..- ..++++...+...+.|.. +++++++++.|..
T Consensus 96 v~~~g~~a~L~Vla~~~a~lG~v~~~m~~~v~~l~~~L~~ 135 (163)
T 1j3w_A 96 VDEAGEHALLVLVFDETAPLGKVKLHGKRASEALARIAEE 135 (163)
T ss_dssp EEESSTTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCeEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3332 347888888988888864 4555566665543
No 12
>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}
Probab=79.43 E-value=1.8 Score=29.93 Aligned_cols=98 Identities=9% Similarity=0.093 Sum_probs=52.0
Q ss_pred ccceEEEEecCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCCCccceE-EcCeEEEEEEeCCCceEEEecCCCcEEEEec
Q 032811 21 HLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDFDQPGHLAPTGLH-LGGTKYMVIQGEAGAVIRGKKGSGGVTIKKT 99 (133)
Q Consensus 21 ~~~~aaI~g~dG~~wA~s~~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~-i~g~KY~~~r~d~~~~i~~kk~~~G~~i~kt 99 (133)
.+..|++++.||- .+++.+.+...++-+..+...+-.-......-+. .++.+=++++.+ +..++-.. -.
T Consensus 40 GV~~AvvvS~DGL-la~S~~l~~~dae~LAA~aSgl~SLa~~aa~~~~~~G~vrqv~VE~~-~G~l~v~~--------aG 109 (150)
T 3kye_A 40 HTTSAVLLSCDGL-VKSVHGLDPDSADHMAALASGLYSLGRSAGIRFGDGGDVRQVVVELD-STLLFVST--------AG 109 (150)
T ss_dssp TEEEEEEEETTSC-EEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEES-SEEEEEEE--------EE
T ss_pred CeeEEEEEcCCCC-EeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEeC-CcEEEEEE--------cC
Confidence 7999999999999 7777666333344444444433210000001111 345566667766 33332111 12
Q ss_pred CcEEEEEEeCCCCCcchHHHHHHHHHHHH
Q 032811 100 GQALVFGIYEEPVTPGQCNMIVERLGDYL 128 (133)
Q Consensus 100 ~~~iVI~~~~~~~~~~~~~~~v~~lA~yL 128 (133)
..+++...-+...+.+...--+.++++.+
T Consensus 110 ~ga~LaVla~~~adlGlv~~em~~lv~ri 138 (150)
T 3kye_A 110 SGTCLAVLAGREADAAVLGYEMAMLVKSV 138 (150)
T ss_dssp TTEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 24556666677778776655555555444
No 13
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=56.22 E-value=23 Score=23.73 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=53.4
Q ss_pred ccceEEEEecCCCEEEEcCC-C--CCCCHHHHHHHHHh-cCCCCCCCccceEEcCeEEEEEEeCCCceEEEecCCCcEEE
Q 032811 21 HLSASAIVGHDGSVWAQSAN-F--PKFKPEEIAGIMKD-FDQPGHLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGVTI 96 (133)
Q Consensus 21 ~~~~aaI~g~dG~~wA~s~~-f--~~~~~~E~~~l~~~-f~~~~~~~~~Gi~i~g~KY~~~r~d~~~~i~~kk~~~G~~i 96 (133)
.+..+.++|.||.+-++... | .++..+-+..++.. |.-.. .-+=.++...| +.++-.-.+..+++
T Consensus 25 gv~~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~---~la~~Lge~~~--------~~l~~eGe~~~i~i 93 (136)
T 3t12_B 25 GARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQ---ALAKLLGEARF--------QEEVHQGERMGLYV 93 (136)
T ss_dssp CCSEEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHH---HHHHHTTCSCC--------CCEEEECSSCEEEE
T ss_pred CCeEEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHH---HHHHHHCCCch--------hHheEEcCcCCEEE
Confidence 68889999999988887532 2 14555556555542 11000 00000110000 11221222344555
Q ss_pred EecC-cEEEEEEeCCCCCcch----HHHHHHHHHHHHHh
Q 032811 97 KKTG-QALVFGIYEEPVTPGQ----CNMIVERLGDYLID 130 (133)
Q Consensus 97 ~kt~-~~iVI~~~~~~~~~~~----~~~~v~~lA~yL~~ 130 (133)
.... .+|++..++...+-|- .+++++++++-|.+
T Consensus 94 ~~vg~~~iLvvifd~~~~LG~Vrl~~kka~~~l~~il~~ 132 (136)
T 3t12_B 94 DEAGEHALLVLVFDETAPLGKVKLHGKAAAAALAAIAEE 132 (136)
T ss_dssp EESSTTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCEEEEEEeCCCCCceEeeehHHHHHHHHHHHHHH
Confidence 5654 6999999999988775 55666666666654
No 14
>4g29_A Secreted effector protein SSEI; cysteine protease superfamily, protein binding; 1.70A {Salmonella enterica subsp} PDB: 4g2b_A
Probab=44.11 E-value=17 Score=25.79 Aligned_cols=21 Identities=19% Similarity=0.703 Sum_probs=19.3
Q ss_pred CcchHHHHHHHHHHHHHhCCC
Q 032811 113 TPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 113 ~~~~~~~~v~~lA~yL~~~Gy 133 (133)
..++|..++..++++|++.||
T Consensus 38 P~~~Ce~s~~~V~~~Lk~~gy 58 (186)
T 4g29_A 38 PVGQCESLMTPVSNFMNEKGF 58 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhCCC
Confidence 568999999999999999997
No 15
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=42.74 E-value=84 Score=23.85 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeC
Q 032811 40 NFPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 40 ~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~d 80 (133)
+| +-+.+|+..++++|. | ....-.+++|+++.+.++.
T Consensus 216 dw-~~~a~~i~~~iRa~~-p--~Pga~~~~~g~~~ki~~a~ 252 (317)
T 3rfo_A 216 DW-TKTGEEVYNHIRGLN-P--WPVAYTTLAGQVVKVWWGE 252 (317)
T ss_dssp CT-TSCHHHHHHHHHHTT-T--TTCCEEEETTEEEEEEEEE
T ss_pred CH-HHhHHHHHHHHhccC-C--CCceEEEECCeEEEEEEEE
Confidence 47 668899999999994 3 2233466899999988764
No 16
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=42.23 E-value=83 Score=23.88 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeC
Q 032811 40 NFPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 40 ~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~d 80 (133)
+| +-+.+|+..++++|. | ....-.+++|+++.+.++.
T Consensus 219 dw-~~~a~~I~~~iRa~~-P--~Pga~~~~~g~~~ki~~a~ 255 (318)
T 3q0i_A 219 NW-SDAATHIERCIRAFN-P--WPMSHFEVAENSIKVWQAR 255 (318)
T ss_dssp CT-TSBHHHHHHHHHHTT-T--TTCCEEEETTEEEEEEEEE
T ss_pred cc-CCCHHHHHHHHhccC-C--CCceEEEECCEEEEEEEEE
Confidence 47 668899999999995 3 2234467899999998864
No 17
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=40.82 E-value=53 Score=20.90 Aligned_cols=38 Identities=5% Similarity=0.272 Sum_probs=24.9
Q ss_pred cEEEEec-CcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 93 GVTIKKT-GQALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 93 G~~i~kt-~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
|++++.. |+.+-|.+ .+ .-++..+.++..++-.++.||
T Consensus 67 GFvviN~dKK~mSvsF-sd--~~~~~K~~i~ei~kkykd~Gy 105 (111)
T 2jmk_A 67 GFVVVNADKKLMSVSF-SD--IDENMKKVIKATAEKFKNKGF 105 (111)
T ss_dssp EEEEEETTTTEEEEEE-CS--CCTTHHHHHHHHHHHGGGGCC
T ss_pred EEEEEecCCeEEEEEe-eh--hhhhHHHHHHHHHHHhhcCCc
Confidence 4444443 34444444 33 346788899999999999998
No 18
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=38.44 E-value=43 Score=23.62 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=22.1
Q ss_pred EEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 102 ALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 102 ~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
.||+ +++....+.+..++...+-++|++.||
T Consensus 150 ~IiL-~Hd~~~~~~~t~~al~~ii~~l~~~Gy 180 (216)
T 2c71_A 150 TIIL-LHDVQPEPHPTPEALDIIIPTLKSRGY 180 (216)
T ss_dssp BEEE-EESCCSSSCCHHHHHHHHHHHHHHTTC
T ss_pred cEEE-EECCCCChHHHHHHHHHHHHHHHHCCC
Confidence 4444 444433345677899999999999998
No 19
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=36.59 E-value=1.1e+02 Score=23.13 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeC
Q 032811 40 NFPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 40 ~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~d 80 (133)
+| +-+.+|+..++++|. | ....-.+++|+++.+.++.
T Consensus 214 dw-~~~a~~I~~~iRa~~-P--~Pga~~~~~g~~~ki~~a~ 250 (314)
T 3tqq_A 214 DW-RKSAVEIARQVRAFN-P--TPIAFTYFEGQPMRIWRAT 250 (314)
T ss_dssp CT-TSBHHHHHHHHHHTT-T--TTCCEEEETTEEEEEEEEE
T ss_pred cc-cCCHHHHHHHHhccC-C--CCceEEEECCEEEEEEEEE
Confidence 47 668899999999996 3 2233467899999988764
No 20
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=34.39 E-value=1.1e+02 Score=22.94 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeC
Q 032811 40 NFPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 40 ~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~d 80 (133)
+| +-+.+|+..++++|.+|- ...-.+++|+++.+.++.
T Consensus 209 dw-~~~a~~i~~~iRa~~~p~--Pga~~~~~g~~~ki~~a~ 246 (305)
T 2bln_A 209 EW-HKPASVLHNMVRAVADPW--PGAFSYVGNQKFTVWSSR 246 (305)
T ss_dssp CT-TSBHHHHHHHHHHTCTTS--CCEEEEETTEEEEEEEEE
T ss_pred CC-cCCHHHHHHHHhccCCCC--CceEEEECCEEEEEEEEE
Confidence 47 668899999999997552 233356799999988763
No 21
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=34.03 E-value=64 Score=22.77 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=25.8
Q ss_pred EEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 94 VTIKKTGQALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 94 ~~i~kt~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
+.|..+.+.++-|-. +..++..++.++++.|++.||
T Consensus 61 ~lIF~SGKiv~TGAk----S~e~a~~a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 61 LLIFRSGKVNCTGAK----SKEEAEIAIKKIIKELKDAGI 96 (188)
T ss_dssp EEECTTSEEEEEEES----SHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCeEEEecCC----CHHHHHHHHHHHHHHHHhcCC
Confidence 444455555554443 347899999999999999886
No 22
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=33.41 E-value=25 Score=22.40 Aligned_cols=18 Identities=17% Similarity=0.551 Sum_probs=15.7
Q ss_pred CccceEEcCeEEEEEEeC
Q 032811 63 APTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 63 ~~~Gi~i~g~KY~~~r~d 80 (133)
..+-+.++|++|+++|.+
T Consensus 74 ~Gtevk~dgeey~i~re~ 91 (99)
T 1p3h_A 74 GGTEIKYNGEEYLILSAR 91 (99)
T ss_dssp TCEEEEETTEEEEEEEGG
T ss_pred CCeEEEECCEEEEEEEhH
Confidence 456699999999999987
No 23
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=32.83 E-value=26 Score=22.23 Aligned_cols=18 Identities=0% Similarity=0.156 Sum_probs=15.6
Q ss_pred CccceEEcCeEEEEEEeC
Q 032811 63 APTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 63 ~~~Gi~i~g~KY~~~r~d 80 (133)
..+-+.++|++|+++|.+
T Consensus 72 ~Gtevk~dgeey~i~re~ 89 (97)
T 1pcq_O 72 GVKSEKIDNEEVLIMSES 89 (97)
T ss_dssp SCEEEEETTEEEEEEEGG
T ss_pred CCeEEEECCEEEEEEEhH
Confidence 456699999999999987
No 24
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=32.76 E-value=67 Score=23.35 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=25.4
Q ss_pred EEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 94 VTIKKTGQALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 94 ~~i~kt~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
+.|..+.+.++.|-- +..++..++.++++.|++.|+
T Consensus 91 ~LIF~SGKiV~TGAk----S~e~a~~A~~ki~~~L~~lG~ 126 (218)
T 3eik_A 91 ALIFASGKMVITGAK----SEKSSRMAAQRYAKIIHKLGF 126 (218)
T ss_dssp EEECTTSEEEEEEES----SHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCeEEEEecC----CHHHHHHHHHHHHHHHHHcCC
Confidence 334444454444432 568999999999999999886
No 25
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=32.07 E-value=37 Score=21.41 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.7
Q ss_pred CccceEEcCeEEEEEEeC
Q 032811 63 APTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 63 ~~~Gi~i~g~KY~~~r~d 80 (133)
..+-+.++|++|+++|.+
T Consensus 71 ~Gtevk~dg~ey~i~re~ 88 (95)
T 3nx6_A 71 AGSSYKSEGVEYKVLRED 88 (95)
T ss_dssp CSEEEEETTEEEEEEEGG
T ss_pred CCeEEEECCEEEEEEEHH
Confidence 456799999999999987
No 26
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=28.55 E-value=60 Score=22.28 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHhCCC
Q 032811 115 GQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 115 ~~~~~~v~~lA~yL~~~Gy 133 (133)
.+..++...+-++|++.||
T Consensus 159 ~~t~~al~~ii~~l~~~Gy 177 (195)
T 2cc0_A 159 ANTLAAIPRIAQTLAGKGL 177 (195)
T ss_dssp HHHHHHHHHHHHHHHHTTE
T ss_pred hhHHHHHHHHHHHHHHCCC
Confidence 4577899999999999997
No 27
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=27.41 E-value=1.6e+02 Score=22.10 Aligned_cols=37 Identities=14% Similarity=0.369 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeC
Q 032811 40 NFPKFKPEEIAGIMKDFDQPGHLAPTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 40 ~f~~~~~~E~~~l~~~f~~~~~~~~~Gi~i~g~KY~~~r~d 80 (133)
+| +-+.+|+..++++|. | ....-.+++|+++.+.++.
T Consensus 215 dw-~~~a~~i~~~iRa~~-p--~Pga~~~~~g~~~ki~~a~ 251 (314)
T 1fmt_A 215 DW-SLSAAQLERCIRAFN-P--WPMSWLEIEGQPVKVWKAS 251 (314)
T ss_dssp CT-TSBHHHHHHHHHHTT-T--TTCEEEEETTEEEEEEEEE
T ss_pred cc-cccHHHHHHHHhccC-C--CCceEEEECCEEEEEEEEE
Confidence 47 678899999999995 3 2233356799999988864
No 28
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.20 E-value=20 Score=22.56 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=10.2
Q ss_pred HHHHHHHHhCCC
Q 032811 122 ERLGDYLIDQGL 133 (133)
Q Consensus 122 ~~lA~yL~~~Gy 133 (133)
+.+|+||++.||
T Consensus 25 ~~VadWLkk~g~ 36 (90)
T 2eap_A 25 DSLADYFKKLNY 36 (90)
T ss_dssp TTHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 568999999887
No 29
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=27.08 E-value=1.4e+02 Score=21.11 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=18.9
Q ss_pred CcchHHHHHHHHHHHHHhCCC
Q 032811 113 TPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 113 ~~~~~~~~v~~lA~yL~~~Gy 133 (133)
+..++..++.++++.|++.|+
T Consensus 76 S~e~a~~a~~~i~~~L~~lG~ 96 (198)
T 1mp9_A 76 STDELIKAVKRIIKTLKKYGM 96 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHcCC
Confidence 557999999999999999886
No 30
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=27.06 E-value=1e+02 Score=21.53 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=25.1
Q ss_pred EEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 94 VTIKKTGQALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 94 ~~i~kt~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
+.|..+.+.++-|- .+..++..++.++++.|++.|+
T Consensus 57 ~lIF~SGKiv~TGa----kS~~~~~~a~~~i~~~L~~lG~ 92 (182)
T 1ais_A 57 LLIFSSGKLVVTGA----KSVQDIERAVAKLAQKLKSIGV 92 (182)
T ss_dssp EEECTTSEEEEEEE----SSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCeEEEecC----CCHHHHHHHHHHHHHHHHHcCC
Confidence 44444444444433 2457999999999999999886
No 31
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.22 E-value=44 Score=20.89 Aligned_cols=20 Identities=20% Similarity=0.665 Sum_probs=17.6
Q ss_pred CcchHHHHHHHHHHHHHhCC
Q 032811 113 TPGQCNMIVERLGDYLIDQG 132 (133)
Q Consensus 113 ~~~~~~~~v~~lA~yL~~~G 132 (133)
.|.+....++++|+|..++|
T Consensus 20 PPpdir~iIdktA~fVaknG 39 (90)
T 2e5z_A 20 PPPDVQPVIDKLAEYVARNG 39 (90)
T ss_dssp CCTTTHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHcc
Confidence 45678999999999999988
No 32
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=25.89 E-value=1.1e+02 Score=21.35 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=25.0
Q ss_pred EEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 94 VTIKKTGQALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 94 ~~i~kt~~~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
+.|..+.+.++-|-- +..++..++.++++.|++.|+
T Consensus 53 ~lIF~SGKiv~TGak----s~e~~~~a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 53 ALIFASGKMVVTGAK----SEDDSKLASRKYARIIQKIGF 88 (180)
T ss_dssp EEECTTSEEEEEEES----SHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCeEEEEecC----CHHHHHHHHHHHHHHHHHcCC
Confidence 344445555544432 457899999999999998875
No 33
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=25.70 E-value=35 Score=21.78 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=15.6
Q ss_pred CccceEEcCeEEEEEEeC
Q 032811 63 APTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 63 ~~~Gi~i~g~KY~~~r~d 80 (133)
..+-+.++|++|+++|.+
T Consensus 76 ~Gtevk~dgeeyli~re~ 93 (100)
T 1we3_O 76 GGTEIEIDGEEYVILSER 93 (100)
T ss_dssp CSEEEECSSCEEEEECTT
T ss_pred CCeEEEECCEEEEEEEhH
Confidence 456699999999999987
No 34
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=25.60 E-value=55 Score=18.53 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHHhcCC
Q 032811 39 ANFPKFKPEEIAGIMKDFDQ 58 (133)
Q Consensus 39 ~~f~~~~~~E~~~l~~~f~~ 58 (133)
|.|..|+++|+..|+.-+..
T Consensus 58 p~~~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 58 PPHPQVAEADIEKIVRWVLT 77 (79)
T ss_dssp CCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 34657899999999987754
No 35
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=24.75 E-value=1.2e+02 Score=22.67 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=23.3
Q ss_pred EEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032811 102 ALVFGIYEEPVTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 102 ~iVI~~~~~~~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
..||-+++.. ......++..++-++|++.||
T Consensus 275 g~IIL~Hd~~-g~~~t~~aL~~iI~~Lk~~Gy 305 (311)
T 2w3z_A 275 VQVVLMHDIS-EKTITLASLPQIIRYYKDRGY 305 (311)
T ss_dssp EEEEEEECST-TCHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCC-ChhhHHHHHHHHHHHHHHCCC
Confidence 3566666642 234677899999999999998
No 36
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=23.82 E-value=1e+02 Score=18.39 Aligned_cols=34 Identities=15% Similarity=0.400 Sum_probs=25.4
Q ss_pred ccceEEEEecCCCEEEEcCCCCCCCHHHHHHHHHhc
Q 032811 21 HLSASAIVGHDGSVWAQSANFPKFKPEEIAGIMKDF 56 (133)
Q Consensus 21 ~~~~aaI~g~dG~~wA~s~~f~~~~~~E~~~l~~~f 56 (133)
.+-...|++.+|.+.....+. .+++++..+++.+
T Consensus 104 ~~P~~~lid~~G~i~~~~~g~--~~~~~l~~~l~~l 137 (138)
T 4evm_A 104 SYPTQAFIDKEGKLVKTHPGF--MEKDAILQTLKEL 137 (138)
T ss_dssp SSSEEEEECTTCCEEEEEESC--CCHHHHHHHHHHC
T ss_pred cCCeEEEECCCCcEEEeecCC--CcHHHHHHHHHhh
Confidence 345578999999887766665 5789988887654
No 37
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=23.80 E-value=25 Score=27.27 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=22.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHhCC
Q 032811 104 VFGIYEEPVTPGQCNMIVERLGDYLIDQG 132 (133)
Q Consensus 104 VI~~~~~~~~~~~~~~~v~~lA~yL~~~G 132 (133)
|||+|.+...-.+...|.+.-|+.|+++|
T Consensus 333 IiG~YrG~~~N~eLf~AA~~YA~~Lkenn 361 (391)
T 2wj8_A 333 IMGEYRGTPRNQDLYDAAKAYAEQLKENG 361 (391)
T ss_dssp CCSSCCCCCSCHHHHHHHHHHHHHHTTCC
T ss_pred eeeeccCCCCChHHHHHHHHHHHHHHhcC
Confidence 46778777766778888888888888775
No 38
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=23.70 E-value=67 Score=24.97 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=24.5
Q ss_pred eEEEEecCCCEEEE----c--------CCCCCCCHHHHHHHHHhc
Q 032811 24 ASAIVGHDGSVWAQ----S--------ANFPKFKPEEIAGIMKDF 56 (133)
Q Consensus 24 ~aaI~g~dG~~wA~----s--------~~f~~~~~~E~~~l~~~f 56 (133)
.-|+||.||++|-. + -.| .++|+|+..++...
T Consensus 41 ~~AVFD~DgTl~~~D~~e~~~~yql~~~~~-~~~p~~~~~v~~~~ 84 (385)
T 4gxt_A 41 PFAVFDWDNTSIIGDVEEALLYYMVRNVSF-KMDPEEFYELIRKN 84 (385)
T ss_dssp EEEEECCTTTTEESCHHHHHHHHHHHHTCC-CCCHHHHHHHHHTT
T ss_pred CEEEEcCCCCeecccccccHHHHHHHhhhc-cCCHHHHHHHHHhc
Confidence 46999999999952 1 236 88999999888743
No 39
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown functio protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.348.1.1 d.348.1.1
Probab=23.23 E-value=1.6e+02 Score=19.13 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=28.0
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHhcCC--C-CCCCccceEEcCeEEEEEEeC
Q 032811 30 HDGSVWAQSANFPKFKPEEIAGIMKDFDQ--P-GHLAPTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 30 ~dG~~wA~s~~f~~~~~~E~~~l~~~f~~--~-~~~~~~Gi~i~g~KY~~~r~d 80 (133)
.+|.+.++|+++ . +......=+..++. + .....--..-+|+-|+.|++.
T Consensus 22 ~NgeiI~sSe~Y-~-sk~~a~~gI~sVk~na~~~~~fe~~~~~~gk~yF~Lka~ 73 (118)
T 2k49_A 22 GNGEVILTSELY-T-GKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAA 73 (118)
T ss_dssp SSSCEEEECCCB-S-SHHHHHHHHHHHHHHTTCGGGEEEEEETTTEEEEEEECT
T ss_pred CCCCEEEECCCc-C-CHHHHHHHHHHHHHhCcccceEEEEEccCCCEEEEEEcC
Confidence 489999999988 3 56655544444431 1 112233344456666666665
No 40
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=21.95 E-value=2.4e+02 Score=20.75 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHhcC-CCCCCCccceEEcCeEEEEEEeC
Q 032811 40 NFPKFKPEEIAGIMKDFD-QPGHLAPTGLHLGGTKYMVIQGE 80 (133)
Q Consensus 40 ~f~~~~~~E~~~l~~~f~-~~~~~~~~Gi~i~g~KY~~~r~d 80 (133)
+| +-+.+|+..++++|. +|- ...-..++|+++.+.++.
T Consensus 203 dw-~~~a~~I~~~IRa~~~~p~--PgA~t~~~g~~~ki~~a~ 241 (260)
T 1zgh_A 203 SP-DFDLEKIYDYIRMLDGEGY--PRAFIKYGKYRLEFSRAS 241 (260)
T ss_dssp CT-TSCHHHHHHHHHHTCSTTC--CCCEEEETTEEEEEEEEE
T ss_pred Cc-ccCHHHHHHHHHhhCCCCC--CcEEEEECCEEEEEEEEE
Confidence 47 668999999999996 442 223356799999998874
No 41
>2lqc_B Voltage-dependent L-type calcium channel subunit; metal binding protein-transport protein complex; NMR {Homo sapiens}
Probab=26.82 E-value=20 Score=17.02 Aligned_cols=8 Identities=50% Similarity=1.170 Sum_probs=6.5
Q ss_pred CChHHHhh
Q 032811 1 MSWQTYVD 8 (133)
Q Consensus 1 MSW~~yv~ 8 (133)
.|||+-||
T Consensus 6 LSWQAAId 13 (26)
T 2lqc_B 6 LSWQAAID 13 (26)
Confidence 47999887
No 42
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=21.07 E-value=82 Score=25.82 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=23.3
Q ss_pred CcEEEEEEeCCCC-CcchHHHHHHHHHHHHHhCCC
Q 032811 100 GQALVFGIYEEPV-TPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 100 ~~~iVI~~~~~~~-~~~~~~~~v~~lA~yL~~~Gy 133 (133)
++.+|++..+++. ..-.+..+...+|+|++++|+
T Consensus 221 rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~ 255 (507)
T 1fx0_A 221 YTIVVAETADSPATLQYLAPYTGAALAEYFMYRER 255 (507)
T ss_dssp SEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456666666643 334567778889999999885
No 43
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=20.61 E-value=95 Score=18.51 Aligned_cols=17 Identities=24% Similarity=0.620 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhCC
Q 032811 116 QCNMIVERLGDYLIDQG 132 (133)
Q Consensus 116 ~~~~~v~~lA~yL~~~G 132 (133)
.....++++|+|..++|
T Consensus 16 ~~~~iIdktA~fVaknG 32 (78)
T 1x4o_A 16 EAKNLAEKLARFIADGG 32 (78)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 78999999999999988
No 44
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=20.15 E-value=2.6e+02 Score=20.43 Aligned_cols=43 Identities=7% Similarity=0.119 Sum_probs=28.9
Q ss_pred CCcEEEEecCcEEEEEEeCCC-------CCcchHHHHHHHHHHHHHhCCC
Q 032811 91 SGGVTIKKTGQALVFGIYEEP-------VTPGQCNMIVERLGDYLIDQGL 133 (133)
Q Consensus 91 ~~G~~i~kt~~~iVI~~~~~~-------~~~~~~~~~v~~lA~yL~~~Gy 133 (133)
-.|+++.....-+++-.|..+ .+..++..++.++++.|.+.|+
T Consensus 99 Fpgli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~~~L~~lg~ 148 (240)
T 1rm1_A 99 FAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGF 148 (240)
T ss_dssp CSEEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 346555444434444555544 2567899999999999998875
Done!