BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032812
MLQQLLTLHVYICRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSK
GFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADRVK
VNFFDEEPKTQKS

High Scoring Gene Products

Symbol, full name Information P value
AT5G06210 protein from Arabidopsis thaliana 1.0e-27
AT2G37510 protein from Arabidopsis thaliana 1.5e-19
ATRZ-1A
AT3G26420 		protein from Arabidopsis thaliana 3.6e-18
AT2G27330 protein from Arabidopsis thaliana 2.0e-17
AT5G54580 protein from Arabidopsis thaliana 3.2e-17
RBMXL1
RNA binding motif protein, X-linked-like-1 		protein from Homo sapiens 4.4e-17
cirbp
cold inducible RNA binding protein 		gene_product from Danio rerio 6.7e-17
AT1G73530 protein from Arabidopsis thaliana 8.6e-17
cirbp
Cold-inducible RNA-binding protein 		protein from Xenopus (Silurana) tropicalis 1.4e-16
blt801
Glycine-rich RNA-binding protein blt801 		protein from Hordeum vulgare 1.8e-16
ORRM1
AT3G20930 		protein from Arabidopsis thaliana 1.9e-16
CCR1
AT4G39260 		protein from Arabidopsis thaliana 2.3e-16
RBMX
RNA-binding motif protein, X chromosome, N-terminally processed 		protein from Homo sapiens 3.7e-16
RBMX
RNA-binding motif protein, X chromosome, N-terminally processed 		protein from Homo sapiens 3.7e-16
RBMX
Uncharacterized protein 		protein from Sus scrofa 3.7e-16
cirbp
Cold-inducible RNA-binding protein 		protein from Rana catesbeiana 4.7e-16
CIRBP
Uncharacterized protein 		protein from Bos taurus 1.3e-15
CIRBP
Uncharacterized protein 		protein from Canis lupus familiaris 1.3e-15
CIRBP
Uncharacterized protein 		protein from Canis lupus familiaris 1.3e-15
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 1.3e-15
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 1.3e-15
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 1.3e-15
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 1.3e-15
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 1.3e-15
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 1.3e-15
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 1.3e-15
CIRBP
Uncharacterized protein 		protein from Sus scrofa 1.3e-15
CIRBP
Cold-inducible RNA-binding protein 		protein from Cricetulus griseus 1.3e-15
CIRBP
Cold-inducible RNA-binding protein 		protein from Pongo abelii 1.3e-15
Cirbp
cold inducible RNA binding protein 		protein from Mus musculus 1.3e-15
Cirbp
cold inducible RNA binding protein 		gene from Rattus norvegicus 1.3e-15
RBMX
Uncharacterized protein 		protein from Sus scrofa 1.3e-15
Rbmx
RNA binding motif protein, X-linked 		gene from Rattus norvegicus 1.3e-15
RBMX
Rbmx 		protein from Bos taurus 1.3e-15
RBMX
RNA-binding motif protein, X chromosome 		protein from Homo sapiens 1.3e-15
RBMX
RNA-binding motif protein, X chromosome 		protein from Pan troglodytes 1.3e-15
RBMX
RNA-binding motif protein, X chromosome 		protein from Macaca fascicularis 1.3e-15
Rbmx
RNA binding motif protein, X chromosome 		protein from Mus musculus 1.3e-15
RBMX
Uncharacterized protein 		protein from Canis lupus familiaris 1.3e-15
Rbmxl1
RNA binding motif protein, X linked-like-1 		protein from Mus musculus 1.6e-15
RBM3
Uncharacterized protein 		protein from Sus scrofa 2.0e-15
AT3G46020 protein from Arabidopsis thaliana 2.0e-15
RBMX
Uncharacterized protein 		protein from Gallus gallus 2.1e-15
rbmx
RNA-binding motif protein, X chromosome 		protein from Xenopus laevis 2.3e-15
CIRBP
Uncharacterized protein 		protein from Gallus gallus 2.6e-15
CIRBP
Uncharacterized protein 		protein from Gallus gallus 2.6e-15
CIRBP
Uncharacterized protein 		protein from Gallus gallus 2.6e-15
CIRBP
cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein 		protein from Homo sapiens 3.3e-15
cirbp-b
Cold-inducible RNA-binding protein B 		protein from Xenopus laevis 3.3e-15
GRP7
AT2G21660 		protein from Arabidopsis thaliana 4.2e-15
zgc:112425 gene_product from Danio rerio 4.2e-15
Rbmxrtl
RNA binding motif protein, X chromosome retrogene-like 		gene from Rattus norvegicus 4.6e-15
Rbmxl1
RNA binding motif protein, X-linked-like 1 		gene from Rattus norvegicus 4.6e-15
GR-RBP5
AT1G74230 		protein from Arabidopsis thaliana 5.4e-15
GR-RBP3
AT5G61030 		protein from Arabidopsis thaliana 6.4e-15
LOC100135403
LOC100135403 protein 		protein from Xenopus (Silurana) tropicalis 6.9e-15
F6RBQ9
Uncharacterized protein 		protein from Bos taurus 6.9e-15
CIRBP
Cold-inducible RNA-binding protein 		protein from Homo sapiens 6.9e-15
Rbm3
RNA binding motif protein 3 		protein from Mus musculus 6.9e-15
AT4G13860 protein from Arabidopsis thaliana 8.8e-15
RBM3
Putative RNA-binding protein 3 		protein from Homo sapiens 1.4e-14
cirbp-a
Cold-inducible RNA-binding protein A 		protein from Xenopus laevis 1.8e-14
RBMX
RNA-binding motif protein, X chromosome 		protein from Bos taurus 2.2e-14
Rbm3
RNA binding motif (RNP1, RRM) protein 3 		gene from Rattus norvegicus 2.3e-14
GRP4
AT3G23830 		protein from Arabidopsis thaliana 3.0e-14
RBM3
Uncharacterized protein 		protein from Canis lupus familiaris 3.8e-14
RBMXL2
RNA-binding motif protein, X-linked-like-2 		protein from Homo sapiens 4.7e-14
RBMX
Uncharacterized protein 		protein from Sus scrofa 6.2e-14
RBM3
Uncharacterized protein 		protein from Canis lupus familiaris 7.9e-14
GR-RBP2
AT4G13850 		protein from Arabidopsis thaliana 1.6e-13
rbmx
RNA binding motif protein, X-linked 		gene_product from Danio rerio 3.2e-13
MCA1010
RNA-binding protein 		protein from Methylococcus capsulatus str. Bath 3.4e-13
LOC100514264
Uncharacterized protein 		protein from Sus scrofa 4.4e-13
I3LQ36
Uncharacterized protein 		protein from Sus scrofa 4.4e-13
AT4G20030 protein from Arabidopsis thaliana 5.6e-13
CBU_1183
Glycine-rich RNA-binding protein 		protein from Coxiella burnetii RSA 493 1.2e-12
CBU_1183
nucleic acid binding domain protein 		protein from Coxiella burnetii RSA 493 1.2e-12
TRA2B
Uncharacterized protein 		protein from Gallus gallus 1.2e-12
RBMY1D
RNA-binding motif protein, Y chromosome, family 1 member D 		protein from Homo sapiens 1.4e-12
RBMY1E
RNA-binding motif protein, Y chromosome, family 1 member E 		protein from Homo sapiens 1.4e-12
RBMXL3
RNA-binding motif protein, X-linked-like-3 		protein from Homo sapiens 1.5e-12
AT2G37220 protein from Arabidopsis thaliana 1.6e-12
RBMY1B
RNA-binding motif protein, Y chromosome, family 1 member B 		protein from Homo sapiens 1.6e-12
RBMY1E
RNA-binding motif protein, Y chromosome, family 1 member E 		protein from Homo sapiens 1.6e-12
RBMY1D
RNA-binding motif protein, Y chromosome, family 1 member D 		protein from Homo sapiens 1.6e-12
RBMY1A1
RNA-binding motif protein, Y chromosome, family 1 member A1 		protein from Homo sapiens 1.6e-12
TRA2A
Uncharacterized protein 		protein from Gallus gallus 2.4e-12
TRA2B
Transformer-2 protein homolog beta 		protein from Bos taurus 2.7e-12
TRA2B
Uncharacterized protein 		protein from Canis lupus familiaris 2.7e-12
TRA2B
Transformer-2 protein homolog beta 		protein from Homo sapiens 2.7e-12
Tra2b
transformer 2 beta homolog (Drosophila) 		protein from Mus musculus 2.7e-12
Tra2b
transformer 2 beta homolog (Drosophila) 		gene from Rattus norvegicus 2.7e-12
tra2a
transformer-2 alpha 		gene_product from Danio rerio 3.1e-12
TRA2A
Uncharacterized protein 		protein from Gallus gallus 3.8e-12
TRA2A
Transformer-2 protein homolog alpha 		protein from Homo sapiens 3.9e-12
TRA2A
cDNA FLJ50689, highly similar to Transformer-2 protein homolog 		protein from Homo sapiens 3.9e-12
RPS19
AT5G47320 		protein from Arabidopsis thaliana 3.9e-12
TRA2B
Uncharacterized protein 		protein from Sus scrofa 4.1e-12

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032812
        (133 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi...   310  1.0e-27   1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi...   233  1.5e-19   1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido...   220  3.6e-18   1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi...   213  2.0e-17   1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi...   211  3.2e-17   1
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote...   197  4.4e-17   2
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   208  6.7e-17   1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi...   207  8.6e-17   1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi...   205  1.4e-16   1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin...   204  1.8e-16   1
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi...   208  1.9e-16   1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,...   203  2.3e-16   1
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein...   201  3.7e-16   1
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein...   201  3.7e-16   1
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ...   201  3.7e-16   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   200  4.7e-16   1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer...   199  6.0e-16   1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   196  1.3e-15   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   196  1.3e-15   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   196  1.3e-15   1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi...   196  1.3e-15   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   196  1.3e-15   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   196  1.3e-15   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   196  1.3e-15   1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   196  1.3e-15   1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   196  1.3e-15   1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   196  1.3e-15   1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   196  1.3e-15   1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi...   196  1.3e-15   1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   196  1.3e-15   1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding...   196  1.3e-15   1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro...   196  1.3e-15   1
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ...   201  1.3e-15   1
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l...   201  1.3e-15   1
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein...   201  1.3e-15   1
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein...   201  1.3e-15   1
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein...   201  1.3e-15   1
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein...   201  1.3e-15   1
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,...   201  1.3e-15   1
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ...   201  1.3e-15   1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei...   200  1.6e-15   1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   194  2.0e-15   1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi...   194  2.0e-15   1
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ...   199  2.1e-15   1
UNIPROTKB|Q6IRQ4 - symbol:rbmx "RNA-binding motif protein...   198  2.3e-15   1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"...   193  2.6e-15   1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"...   193  2.6e-15   1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"...   193  2.6e-15   1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   192  3.3e-15   1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin...   192  3.3e-15   1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702...   191  4.2e-15   1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"...   191  4.2e-15   1
RGD|1306751 - symbol:Rbmxrtl "RNA binding motif protein, ...   196  4.6e-15   1
RGD|1585845 - symbol:Rbmxl1 "RNA binding motif protein, X...   196  4.6e-15   1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3...   190  5.4e-15   1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin...   191  6.4e-15   1
UNIPROTKB|A9UMT9 - symbol:LOC100135403 "LOC100135403 prot...   194  6.9e-15   1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein...   189  6.9e-15   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   189  6.9e-15   1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   189  6.9e-15   1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   188  8.8e-15   1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi...   188  8.8e-15   1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot...   186  1.4e-14   1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin...   185  1.8e-14   1
UNIPROTKB|Q29RT0 - symbol:RBMX "RNA-binding motif protein...   190  2.2e-14   1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p...   184  2.3e-14   1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...   183  3.0e-14   1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ...   182  3.8e-14   1
UNIPROTKB|O75526 - symbol:RBMXL2 "RNA-binding motif prote...   187  4.7e-14   1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ...   180  6.2e-14   1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein...   179  7.9e-14   1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3...   176  1.6e-13   1
ZFIN|ZDB-GENE-030131-579 - symbol:rbmx "RNA binding motif...   179  3.2e-13   1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s...   173  3.4e-13   1
UNIPROTKB|I3LH22 - symbol:LOC100514264 "Uncharacterized p...   172  4.4e-13   1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein...   172  4.4e-13   1
TAIR|locus:2119797 - symbol:AT4G20030 species:3702 "Arabi...   171  5.6e-13   1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind...   168  1.2e-12   1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding...   168  1.2e-12   1
UNIPROTKB|Q9DDU8 - symbol:TRA2B "Uncharacterized protein"...   170  1.2e-12   1
UNIPROTKB|B7ZMD9 - symbol:RBMY1D "RNA-binding motif prote...   175  1.4e-12   1
UNIPROTKB|J3KPK3 - symbol:RBMY1E "RNA-binding motif prote...   175  1.4e-12   1
UNIPROTKB|Q8N7X1 - symbol:RBMXL3 "RNA-binding motif prote...   166  1.5e-12   2
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi...   169  1.6e-12   1
UNIPROTKB|A6NDE4 - symbol:RBMY1B "RNA-binding motif prote...   175  1.6e-12   1
UNIPROTKB|A6NEQ0 - symbol:RBMY1E "RNA-binding motif prote...   175  1.6e-12   1
UNIPROTKB|P0C7P1 - symbol:RBMY1D "RNA-binding motif prote...   175  1.6e-12   1
UNIPROTKB|P0DJD3 - symbol:RBMY1A1 "RNA-binding motif prot...   175  1.6e-12   1
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"...   165  2.4e-12   1
UNIPROTKB|Q3ZBT6 - symbol:TRA2B "Transformer-2 protein ho...   167  2.7e-12   1
UNIPROTKB|E2RD37 - symbol:TRA2B "Uncharacterized protein"...   167  2.7e-12   1
UNIPROTKB|P62995 - symbol:TRA2B "Transformer-2 protein ho...   167  2.7e-12   1
MGI|MGI:106016 - symbol:Tra2b "transformer 2 beta homolog...   167  2.7e-12   1
RGD|619886 - symbol:Tra2b "transformer 2 beta homolog (Dr...   167  2.7e-12   1
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a...   167  3.1e-12   1
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"...   165  3.8e-12   1
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si...   163  3.9e-12   1
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho...   163  3.9e-12   1
TAIR|locus:2171539 - symbol:RPS19 "ribosomal protein S19"...   163  3.9e-12   1
UNIPROTKB|I3LBN9 - symbol:TRA2B "Uncharacterized protein"...   165  4.1e-12   1

WARNING:  Descriptions of 1458 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 63/94 (67%), Positives = 75/94 (79%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLSF T+ +GLS+AFS+ GQVVEA IVMDRVSD+SKGFGFVTFAS +EA+KAL E N
Sbjct:    37 FIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFN 96

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG--MPIARGPPE 113
             G+ L+GR I VDYAK K S   G   PIARGPP+
Sbjct:    97 GQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130


>TAIR|locus:2049816 [details] [associations]
            symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
            HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
            RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
            SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
            KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
            InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
            ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
            Uniprot:Q8S8L4
        Length = 142

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 51/105 (48%), Positives = 71/105 (67%)

Query:     7 TLHVYICRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVT 66
             +L V  C     P  +V+GLS  T+N+ L DAF+ +GQ+V+A ++ DR S +SKGFGFVT
Sbjct:    22 SLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVT 81

Query:    67 FASHEEAEKALSEMNGKTLDGRVIVVDYAKPKTSFRSGMPIARGP 111
             +A+ E+AEKA +EMN K LDG VI VD A+P+   R   P+ + P
Sbjct:    82 YATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR---PLQQEP 123


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 38/77 (49%), Positives = 58/77 (75%)

Query:    21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
             C++ GL++ TS++GL DAF +YG +VEA +V+D+ S +S+GFGF+TF   +  ++A++ M
Sbjct:     9 CFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAM 68

Query:    81 NGKTLDGRVIVVDYAKP 97
             NG  LDGR I VD A+P
Sbjct:    69 NGMDLDGRTITVDKAQP 85


>TAIR|locus:2039590 [details] [associations]
            symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
            IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
            ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
            EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
            TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
            PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
            Uniprot:Q1ECN0
        Length = 116

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 38/80 (47%), Positives = 60/80 (75%)

Query:    17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKA 76
             F    +V G+SF ++ + L+ AFSQYGQV++ +++MD++  + KGF +VTF+S EEAEKA
Sbjct:    19 FSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKA 78

Query:    77 LSEMNGKTLDGRVIVVDYAK 96
             L E+N + +DGRV+++D  K
Sbjct:    79 LLELNAQLVDGRVVILDTTK 98


>TAIR|locus:2172144 [details] [associations]
            symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
            HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
            EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
            ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
            PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
            KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
            InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
            ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
            Uniprot:Q9FIU6
        Length = 156

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 41/85 (48%), Positives = 62/85 (72%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V+GLS  T+++GL  AF+Q+G+V +A +V DRVS  SKGFGFV +A+ E++ K ++ M+
Sbjct:    59 FVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMD 118

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMP 106
             GK LDG VI  +YA+P+   +S  P
Sbjct:   119 GKFLDGWVIFAEYARPREQSQSYQP 143


>UNIPROTKB|Q96E39 [details] [associations]
            symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
            eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
            RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
            SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
            PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
            Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
            UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
            neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
            PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
            ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
        Length = 390

 Score = 197 (74.4 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
 Identities = 42/97 (43%), Positives = 61/97 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPP 112
             GK+LDG+ I V+ A  K SF  G       P +RGPP
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFERGRHGPPPPPRSRGPP 106

 Score = 37 (18.1 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query:   106 PIARGPPES 114
             P+ RGPP S
Sbjct:   295 PLTRGPPPS 303


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 39/83 (46%), Positives = 62/83 (74%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+ T+ + L +AFS+YG + + +++ DR +D+S+GFGFVTF + E+A+ A++ MN
Sbjct:    26 FIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMN 85

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG 104
             GK +DGR+I VD A  K+  RSG
Sbjct:    86 GKQVDGRMIRVDEAG-KSGGRSG 107


>TAIR|locus:2206850 [details] [associations]
            symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
            EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
            RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
            SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
            GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
            HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
            ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
        Length = 181

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 42/94 (44%), Positives = 61/94 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV+GLSF T+   L D F Q+G ++  N+VMD+V+++ KGF F+ + + EEA KA+  M+
Sbjct:    80 YVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMH 139

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGP-PES 114
             GK LDGRVI V+ AK ++      P    P P+S
Sbjct:   140 GKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQS 173


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 41/83 (49%), Positives = 57/83 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+F T+ + L   FS+YGQV E  +V DR S +S+GFGFVTF + E+A+ A+  MN
Sbjct:     9 FVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG 104
             GK++DGR I VD A   ++ R G
Sbjct:    69 GKSVDGRQIRVDQAGKSSNDRRG 91


>UNIPROTKB|Q43472 [details] [associations]
            symbol:blt801 "Glycine-rich RNA-binding protein blt801"
            species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
            to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
            EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
            Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
        Length = 161

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 39/84 (46%), Positives = 58/84 (69%)

Query:    21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
             C+V GL + T ++ L +AFS+YG V+++ I+ DR + +S+GFGFVTFAS E   +A+  M
Sbjct:     8 CFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAM 67

Query:    81 NGKTLDGRVIVVDYAKPKTSFRSG 104
             NG+ LDGR I V+ A+ + S   G
Sbjct:    68 NGQDLDGRNITVNEAQSRRSDGGG 91


>TAIR|locus:2088756 [details] [associations]
            symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0019252 "starch biosynthetic
            process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
            EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
            UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
            EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
            TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
            ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
            Uniprot:Q8L440
        Length = 374

 Score = 208 (78.3 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 41/81 (50%), Positives = 57/81 (70%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLSFYTS K L  AF  +G++VE  I+MD++S +SKG+ F+ + + E A  AL EMN
Sbjct:   285 FITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMN 344

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
             GK ++G +IVVD AK K  FR
Sbjct:   345 GKIINGWMIVVDVAKTKP-FR 364


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 39/84 (46%), Positives = 57/84 (67%)

Query:    21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
             C+V GL++ T+++ L   FSQ+G V+++ I+ DR S +S+GFGFVTF   +    A+ EM
Sbjct:     8 CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67

Query:    81 NGKTLDGRVIVVDYAKPKTSFRSG 104
             NGK LDGRVI V+ A+ + S   G
Sbjct:    68 NGKELDGRVITVNEAQSRGSGGGG 91


>UNIPROTKB|H0Y6E7 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
            Uniprot:H0Y6E7
        Length = 292

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    13 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 72

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    73 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 111


>UNIPROTKB|H3BT71 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
            SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
        Length = 296

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 109


>UNIPROTKB|K7GRX3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
            Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
            Uniprot:K7GRX3
        Length = 306

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 109


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 41/83 (49%), Positives = 57/83 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T  + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + E+A+ A++ MN
Sbjct:     9 FVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG 104
             GKT+DGR I VD A   ++ R G
Sbjct:    69 GKTVDGRQIRVDQAGKSSNDRRG 91


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 41/96 (42%), Positives = 63/96 (65%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+++T++  L + FS+YG + EA +V DR +++S+GFGFV FAS  EA+ A+  MN
Sbjct:     5 FIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMN 64

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIAD 117
              +  DGR+I VD A  + + R+G    RG   S AD
Sbjct:    65 NQEFDGRIIRVDKASERPAARNGGFQGRGGYNSPAD 100


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK++DGR I VD A   +  RS
Sbjct:    69 GKSVDGRQIRVDQAGKSSDNRS 90


>UNIPROTKB|F1RQ90 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
            UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
            Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
            Uniprot:F1RQ90
        Length = 390

 Score = 201 (75.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 109


>RGD|1565256 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
            complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0070062
            "extracellular vesicular exosome" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
            GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
            EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
            UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
            STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
            Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
            InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
            Uniprot:Q4V898
        Length = 390

 Score = 201 (75.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGLPPPPRSRGPPRGL 109


>UNIPROTKB|D3JUI8 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9913 "Bos taurus" [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
            "extracellular vesicular exosome" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
            evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0001047 "core promoter
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
            EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
            Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
            NextBio:20869035 Uniprot:D3JUI8
        Length = 391

 Score = 201 (75.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 109


>UNIPROTKB|P38159 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
            euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
            GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
            EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
            EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
            IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
            RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
            ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
            MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
            SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
            Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
            KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
            MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
            InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
            NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
            Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
        Length = 391

 Score = 201 (75.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 109


>UNIPROTKB|A5A6M3 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9598 "Pan troglodytes" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
            ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
            KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
        Length = 391

 Score = 201 (75.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 109


>UNIPROTKB|Q4R7F0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
            Uniprot:Q4R7F0
        Length = 391

 Score = 201 (75.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 109


>MGI|MGI:1343044 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X chromosome"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
            EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
            EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
            RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
            SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
            PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
            Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
            UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
            Genevestigator:Q9WV02 Uniprot:Q9WV02
        Length = 391

 Score = 201 (75.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGLPPPPRSRGPPRGL 109


>UNIPROTKB|E2R068 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
            Uniprot:E2R068
        Length = 392

 Score = 201 (75.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    12 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 71

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    72 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 110


>MGI|MGI:1343045 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
            selection" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
            GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
            IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
            UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
            STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
            Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
            UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
            NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
        Length = 388

 Score = 200 (75.5 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 109


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 41/90 (45%), Positives = 56/90 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+F T  + L D FS +G + E  +V DR + +S+GFGF+TF + E A  A+  MN
Sbjct:     9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMN 68

Query:    82 GKTLDGRVIVVDYA-KPKTSFRSGMPIARG 110
             G++LDGR I VD+A K     R G   ARG
Sbjct:    69 GESLDGRQIRVDHAGKSARGTRGGAFGARG 98


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 36/84 (42%), Positives = 57/84 (67%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V+ LS YT+++ L   FS +GQ+ EA ++ D  + + KGFGF+TF S ++A KAL  ++
Sbjct:    10 FVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLD 69

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM 105
             GK +DGR+I V+ AK     R+G+
Sbjct:    70 GKIVDGRLIFVEVAKNAEEVRAGI 93


>UNIPROTKB|F1NZD3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
            InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
            EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
            Uniprot:F1NZD3
        Length = 385

 Score = 199 (75.1 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 42/91 (46%), Positives = 60/91 (65%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
             GK+LDG+ I V+ A  K SF SG    RGPP
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGG--RRGPP 98


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 198 (74.8 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 44/97 (45%), Positives = 61/97 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG+VVE  ++ DR ++KS+GF FVTF S  +A+ A  E+N
Sbjct:    11 FIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARELN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADR 118
             GK LDG+ I V+ A  K SF +  P  RGPP S   R
Sbjct:    71 GKALDGKPIKVEQAT-KPSFST--PSRRGPPTSPRSR 104


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 39/81 (48%), Positives = 55/81 (67%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MNG
Sbjct:    10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69

Query:    83 KTLDGRVIVVDYAKPKTSFRS 103
             K++DGR I VD A   +  RS
Sbjct:    70 KSVDGRQIRVDQAGKSSENRS 90


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 39/81 (48%), Positives = 55/81 (67%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MNG
Sbjct:    10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69

Query:    83 KTLDGRVIVVDYAKPKTSFRS 103
             K++DGR I VD A   +  RS
Sbjct:    70 KSVDGRQIRVDQAGKSSENRS 90


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 39/81 (48%), Positives = 55/81 (67%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MNG
Sbjct:    10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69

Query:    83 KTLDGRVIVVDYAKPKTSFRS 103
             K++DGR I VD A   +  RS
Sbjct:    70 KSVDGRQIRVDQAGKSSENRS 90


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 37/74 (50%), Positives = 53/74 (71%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVDYA 95
             GK++DGR I VD A
Sbjct:    69 GKSVDGRQIRVDQA 82


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 37/83 (44%), Positives = 55/83 (66%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+F T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     8 FIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMN 67

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG 104
             GK +DGR I VD A   +  R G
Sbjct:    68 GKAVDGRQIRVDQAGKSSGDRRG 90


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 36/84 (42%), Positives = 56/84 (66%)

Query:    21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
             C+V GL++ T ++ L  AF+QYG V+++ I+ DR + +S+GFGFVTF   +  + A+  M
Sbjct:    10 CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69

Query:    81 NGKTLDGRVIVVDYAKPKTSFRSG 104
             NG+ LDGR I V+ A+ + S   G
Sbjct:    70 NGQDLDGRSITVNEAQSRGSGGGG 93


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 35/74 (47%), Positives = 54/74 (72%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLSF T+ + L DAFS+YG +   ++  +R +++S+GFGFVTF + ++A+ AL  MN
Sbjct:     8 FIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMN 67

Query:    82 GKTLDGRVIVVDYA 95
             GK++DGR I VD A
Sbjct:    68 GKSVDGRTIRVDEA 81


>RGD|1306751 [details] [associations]
            symbol:Rbmxrtl "RNA binding motif protein, X chromosome
            retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006376 "mRNA splice site selection"
            evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0051260 "protein homooligomerization"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
            GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
            IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
            SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
            Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
            UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
            Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
        Length = 388

 Score = 196 (74.1 bits), Expect = 4.6e-15, P = 4.6e-15
 Identities = 42/100 (42%), Positives = 62/100 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+    +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 109


>RGD|1585845 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
            Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
        Length = 388

 Score = 196 (74.1 bits), Expect = 4.6e-15, P = 4.6e-15
 Identities = 42/100 (42%), Positives = 62/100 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+    +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGM------PIARGPPESI 115
             GK+LDG+ I V+ A  K SF SG       P +RGPP  +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGL 109


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 41/90 (45%), Positives = 60/90 (66%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V G+S+ T   GL +AFS+YG+VV+A I++DR + +S+GF FVTF S EEA  A+ +++
Sbjct:    37 FVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLD 95

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGP 111
             G+ L GR I V+YA  + S   G     GP
Sbjct:    96 GQDLHGRRIRVNYATERGSGFGGRGFG-GP 124


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 191 (72.3 bits), Expect = 6.4e-15, P = 6.4e-15
 Identities = 32/79 (40%), Positives = 55/79 (69%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ G+++      L +AF++YG+VV+  +++DR + +S+GFGFVTF S E A  A+  ++
Sbjct:    43 FIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALD 102

Query:    82 GKTLDGRVIVVDYAKPKTS 100
             G+ L GRV+ V+YA  +TS
Sbjct:   103 GRDLHGRVVKVNYANDRTS 121


>UNIPROTKB|A9UMT9 [details] [associations]
            symbol:LOC100135403 "LOC100135403 protein" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
            EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
            STRING:A9UMT9 Uniprot:A9UMT9
        Length = 375

 Score = 194 (73.4 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 42/91 (46%), Positives = 59/91 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG+VVE  ++ DR ++KS+GF FVTF S  +A+ A  E+N
Sbjct:    11 FIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARELN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
             GK LDG+ I V+ A  K SF +  P  RGPP
Sbjct:    71 GKALDGKPIKVEQAT-KPSFSA--PSRRGPP 98


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 38/84 (45%), Positives = 53/84 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+F T  + L D FS +G + E  +V DR + +S+GFGF+TF + E A  A+  MN
Sbjct:     9 FVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMN 68

Query:    82 GKTLDGRVIVVDYA-KPKTSFRSG 104
             G++LDGR I VD+A K     R G
Sbjct:    69 GESLDGRQIRVDHAGKSARGSRGG 92


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 36/72 (50%), Positives = 52/72 (72%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GKTLDGRVIVVD 93
             GK++DGR I VD
Sbjct:    69 GKSVDGRQIRVD 80


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 40/90 (44%), Positives = 55/90 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+F T  + L D FS +G + E  +V DR + +S+GFGF+TF + E A  A+  MN
Sbjct:     9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMN 68

Query:    82 GKTLDGRVIVVDYA-KPKTSFRSGMPIARG 110
             G++LDGR I VD+A K     R G    RG
Sbjct:    69 GESLDGRQIRVDHAGKSARGSRGGAFGGRG 98


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/90 (44%), Positives = 55/90 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+F T  + L D FS +G + E  +V DR + +S+GFGF+TF + E A  A+  MN
Sbjct:     9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMN 68

Query:    82 GKTLDGRVIVVDYA-KPKTSFRSGMPIARG 110
             G++LDGR I VD+A K     R G   A G
Sbjct:    69 GESLDGRQIRVDHAGKSARGTRGGAFGAHG 98


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 38/71 (53%), Positives = 53/71 (74%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  LS  T++  L +AFS YG VV+A ++ DR +D+S+GFGFVT++SH EAE A+S M+
Sbjct:     6 YVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMD 65

Query:    82 GKTLDGRVIVV 92
             GK L+GR + V
Sbjct:    66 GKELNGRRVSV 76


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 38/84 (45%), Positives = 53/84 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+F T  + L D FS +G + E  +V DR + +S+GFGF+TF + E A  A+  MN
Sbjct:     9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMN 68

Query:    82 GKTLDGRVIVVDYA-KPKTSFRSG 104
             G++LDGR I VD+A K     R G
Sbjct:    69 GESLDGRQIRVDHAGKSARGTRGG 92


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 36/83 (43%), Positives = 56/83 (67%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+F T+   L  AF++YG++ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     8 FIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMN 67

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG 104
             GK++DGR I VD A   +  R G
Sbjct:    68 GKSVDGRQIRVDQAGKSSGERRG 90


>UNIPROTKB|Q29RT0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
            of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
            euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
            RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
            SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
            KEGG:bta:617969 KEGG:bta:782306 CTD:27288
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
            NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
        Length = 396

 Score = 190 (71.9 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 40/93 (43%), Positives = 59/93 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T  K L   F +YG++ E  ++ DR ++KS+GF F+TF S  +A+ A+ +MN
Sbjct:    11 FIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPES 114
             GK+LDG+ I V  A  K +F SG    RGPP S
Sbjct:    71 GKSLDGKAIKVAQAT-KPAFESGR---RGPPLS 99


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 39/90 (43%), Positives = 54/90 (60%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+F T  + L D FS +G + E  +V DR + +S+GFGF+TF + E A   +  MN
Sbjct:     9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMN 68

Query:    82 GKTLDGRVIVVDYA-KPKTSFRSGMPIARG 110
             G++LDGR I VD+A K     R G   A G
Sbjct:    69 GESLDGRQIRVDHAGKSARGTRGGAFGAHG 98


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 37/88 (42%), Positives = 57/88 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ T +  L  AF+ +G+V EA ++ DR + +S+GFGFV+F+  + A  A+ EM+
Sbjct:    38 FVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMD 97

Query:    82 GKTLDGRVIVVDYAK-----PKTSFRSG 104
             GK L+GR I V+ A      P++SF  G
Sbjct:    98 GKELNGRQIRVNLATERSSAPRSSFGGG 125


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 39/90 (43%), Positives = 53/90 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+F T  + L D F  +G + E  +V DR + +S+GFGF+TF   E A  A+  MN
Sbjct:     9 FVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAMN 68

Query:    82 GKTLDGRVIVVDYA-KPKTSFRSGMPIARG 110
             G++LDGR I VD+A K     R G   A G
Sbjct:    69 GESLDGRQIRVDHAGKSARGTRGGAFGAHG 98


>UNIPROTKB|O75526 [details] [associations]
            symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
            Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
            EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
            RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
            SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
            PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
            KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
            H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
            HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
            InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
            Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
        Length = 392

 Score = 187 (70.9 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 40/91 (43%), Positives = 57/91 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T  K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
             GK+LDG+ I V  A  K +F S     RGPP
Sbjct:    71 GKSLDGKAIKVAQAT-KPAFESSR---RGPP 97


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 36/82 (43%), Positives = 55/82 (67%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK+LDG+ I V+ A  K SF +
Sbjct:    71 GKSLDGKAIKVEQAT-KPSFEN 91


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/76 (44%), Positives = 51/76 (67%)

Query:    20 LCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSE 79
             + ++ GL+F T+ + L D FS +G + E  +V DR + +S+GF F+TF + E A  A+  
Sbjct:     7 MLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRP 66

Query:    80 MNGKTLDGRVIVVDYA 95
             MNGK+LDGR I VD+A
Sbjct:    67 MNGKSLDGRQIRVDHA 82


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 35/79 (44%), Positives = 53/79 (67%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+ T +  L DAF+ +G VV+A +++DR + +S+GFGFV F     A  A+SEM+
Sbjct:    38 FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97

Query:    82 GKTLDGRVIVVDYAKPKTS 100
             GK L+GR I V+ A  + S
Sbjct:    98 GKELNGRHIRVNPANDRPS 116


>ZFIN|ZDB-GENE-030131-579 [details] [associations]
            symbol:rbmx "RNA binding motif protein, X-linked"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0071347 "cellular response to interleukin-1" evidence=ISS]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
            GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
            EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
            UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
            PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
            GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
            OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
            Bgee:Q7ZWA3 Uniprot:Q7ZWA3
        Length = 379

 Score = 179 (68.1 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 42/99 (42%), Positives = 63/99 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  TS K L   FS++G++ E  ++ DR ++KS+GF FVT+ +  +A+ A  EMN
Sbjct:    11 FIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREMN 70

Query:    82 GKTLDGRVIVVDYA-KPK--TSFRSGMPI--ARGPPESI 115
             GK LDG+ I V+ A KP+  TS R G P   +RGP   +
Sbjct:    71 GKPLDGKPIKVEQATKPQFETSGRRGPPPPRSRGPSRGL 109


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 32/76 (42%), Positives = 50/76 (65%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L++   +  L   F+ YG V  A +VMDR + +S+GFGFV   S +EA+ A++ +N
Sbjct:     6 YVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLN 65

Query:    82 GKTLDGRVIVVDYAKP 97
             GK +DGR ++V+ A+P
Sbjct:    66 GKEMDGRNLMVNEARP 81


>UNIPROTKB|I3LH22 [details] [associations]
            symbol:LOC100514264 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU915617
            Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
        Length = 161

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 38/90 (42%), Positives = 53/90 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+F +  + L D  S +  + E  IV DR + +S+GFGF+TF + E A   +  MN
Sbjct:     9 FVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRAMN 68

Query:    82 GKTLDGRVIVVDYA-KPKTSFRSGMPIARG 110
             G++LDGR I VD+A K     R G   ARG
Sbjct:    69 GESLDGRQIHVDHAGKSAQGTRRGAFGARG 98


>UNIPROTKB|I3LQ36 [details] [associations]
            symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU210877
            Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
        Length = 161

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 38/90 (42%), Positives = 53/90 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+F T  + L D FS +G + E  +V D  + +S+GFGF+TF + E A  A+   N
Sbjct:     9 FVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRATN 68

Query:    82 GKTLDGRVIVVDYA-KPKTSFRSGMPIARG 110
             G++LDGR I VD+A K     R G   A G
Sbjct:    69 GESLDGRQIHVDHAGKSARGTRGGAFEAHG 98


>TAIR|locus:2119797 [details] [associations]
            symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
            EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
            UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
            EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
            TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
            PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
            Uniprot:Q67XI5
        Length = 152

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 35/92 (38%), Positives = 53/92 (57%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L F TS   L   FS +G++ E  ++ D    +SKG+ F+ F S ++A  A+  M+ 
Sbjct:    44 VRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDR 103

Query:    83 KTLDGRVIVVDYAKP-KTSFRSGMPIARGPPE 113
             +  +GR+I +D AKP K  F+ G+P   GPPE
Sbjct:   104 RMYNGRMIYIDIAKPGKRDFQ-GLPRTSGPPE 134


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 33/81 (40%), Positives = 51/81 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  LS+  +   L   F QYG++ EA ++MDR + +SKGF F+T+ + + A++A+S+ N
Sbjct:    21 YVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKAN 80

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
             G  L GR I V+ A+  T  R
Sbjct:    81 GIDLQGRKIRVNIARENTGDR 101


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 33/81 (40%), Positives = 51/81 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  LS+  +   L   F QYG++ EA ++MDR + +SKGF F+T+ + + A++A+S+ N
Sbjct:    21 YVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKAN 80

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
             G  L GR I V+ A+  T  R
Sbjct:    81 GIDLQGRKIRVNIARENTGDR 101


>UNIPROTKB|Q9DDU8 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
            EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
            UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
            GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
            Uniprot:Q9DDU8
        Length = 289

 Score = 170 (64.9 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 39/103 (37%), Positives = 60/103 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG + + +IV D+ S +S+GF FV F + E+A++A    NG
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERANG 181

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADRVKVNFFD 125
               LDGR I VD++  K        I  G P   + R + +++D
Sbjct:   182 MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRR-DYYD 223


>UNIPROTKB|B7ZMD9 [details] [associations]
            symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
            family 1 member D" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
            HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
            SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
        Length = 459

 Score = 175 (66.7 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 40/97 (41%), Positives = 60/97 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F ++G + E  ++ DR S KS+GF F+TF +  +A+ A  +MN
Sbjct:    11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKDMN 69

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADR 118
             GK+L G+ I V+ AK K SF+SG    R PP S  +R
Sbjct:    70 GKSLHGKAIKVEQAK-KPSFQSGG--RRRPPASSRNR 103


>UNIPROTKB|J3KPK3 [details] [associations]
            symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
            EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
            Ensembl:ENST00000382658 Uniprot:J3KPK3
        Length = 459

 Score = 175 (66.7 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 40/97 (41%), Positives = 60/97 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F ++G + E  ++ DR S KS+GF F+TF +  +A+ A  +MN
Sbjct:    11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKDMN 69

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADR 118
             GK+L G+ I V+ AK K SF+SG    R PP S  +R
Sbjct:    70 GKSLHGKAIKVEQAK-KPSFQSGG--RRRPPASSRNR 103


>UNIPROTKB|Q8N7X1 [details] [associations]
            symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
            RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
            SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
            Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
            UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
            neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
            HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
            OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
            CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
        Length = 1067

 Score = 166 (63.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 33/82 (40%), Positives = 52/82 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T  K L   F +YG +++  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDMN 70

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK LDG+ I+V     K +F+S
Sbjct:    71 GKYLDGKAIMVAQTI-KPAFKS 91

 Score = 40 (19.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query:   101 FRSGMPIARGPP 112
             +R+ MP  RGPP
Sbjct:   142 YRAPMPRKRGPP 153


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 169 (64.5 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 34/77 (44%), Positives = 49/77 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  LS+   +  L   FS+ G+VVEA ++ DR S +SKGFGFVT+ S +E + A+  ++
Sbjct:   207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  LDGR I V  A+ +
Sbjct:   267 GADLDGRQIRVSEAEAR 283

 Score = 146 (56.5 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 32/93 (34%), Positives = 47/93 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L F   +  L+  F   G V    ++ D+++ +S+GFGFVT +S  E E A  + N
Sbjct:    94 FVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFN 153

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPES 114
             G  LDGR + V+   P      G   +RGP  S
Sbjct:   154 GYELDGRPLRVNAGPPPPKREDGF--SRGPRSS 184


>UNIPROTKB|A6NDE4 [details] [associations]
            symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
            family 1 member B" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
            "spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
            [GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
            IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
            ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
            PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
            UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
            neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
            InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
            NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
            Genevestigator:A6NDE4 Uniprot:A6NDE4
        Length = 496

 Score = 175 (66.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 40/97 (41%), Positives = 60/97 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F ++G + E  ++ DR S KS+GF F+TF +  +A+ A  +MN
Sbjct:    11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKDMN 69

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADR 118
             GK+L G+ I V+ AK K SF+SG    R PP S  +R
Sbjct:    70 GKSLHGKAIKVEQAK-KPSFQSGG--RRRPPASSRNR 103


>UNIPROTKB|A6NEQ0 [details] [associations]
            symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
            EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
            ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
            PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
            Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
            UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
            neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
            GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
            Genevestigator:A6NEQ0 Uniprot:A6NEQ0
        Length = 496

 Score = 175 (66.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 40/97 (41%), Positives = 60/97 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F ++G + E  ++ DR S KS+GF F+TF +  +A+ A  +MN
Sbjct:    11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKDMN 69

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADR 118
             GK+L G+ I V+ AK K SF+SG    R PP S  +R
Sbjct:    70 GKSLHGKAIKVEQAK-KPSFQSGG--RRRPPASSRNR 103


>UNIPROTKB|P0C7P1 [details] [associations]
            symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
            family 1 member D" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
            EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
            ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
            DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
            Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
            UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
            neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
            OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
            Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
        Length = 496

 Score = 175 (66.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 40/97 (41%), Positives = 60/97 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F ++G + E  ++ DR S KS+GF F+TF +  +A+ A  +MN
Sbjct:    11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKDMN 69

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADR 118
             GK+L G+ I V+ AK K SF+SG    R PP S  +R
Sbjct:    70 GKSLHGKAIKVEQAK-KPSFQSGG--RRRPPASSRNR 103


>UNIPROTKB|P0DJD3 [details] [associations]
            symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
            family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
            InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
            EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
            IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
            PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
            DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
            Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
            GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
            neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
            Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
            Uniprot:P0DJD3
        Length = 496

 Score = 175 (66.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 40/97 (41%), Positives = 60/97 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F ++G + E  ++ DR S KS+GF F+TF +  +A+ A  +MN
Sbjct:    11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKDMN 69

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADR 118
             GK+L G+ I V+ AK K SF+SG    R PP S  +R
Sbjct:    70 GKSLHGKAIKVEQAK-KPSFQSGG--RRRPPASSRNR 103


>UNIPROTKB|E1C875 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
            IPI:IPI00681985 ProteinModelPortal:E1C875
            Ensembl:ENSGALT00000031186 Uniprot:E1C875
        Length = 182

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG +   N+V D+ + +S+GF FV F   +++++A+   NG
Sbjct:    22 VFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANG 81

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
               LDGR I VDY+  K +      I  G P
Sbjct:    82 MELDGRRIRVDYSITKRAHTPTPGIYMGRP 111


>UNIPROTKB|Q3ZBT6 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
            OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
            RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
            SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
            GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
            Uniprot:Q3ZBT6
        Length = 288

 Score = 167 (63.8 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 38/103 (36%), Positives = 60/103 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG + + +IV D+ S +S+GF FV F + ++A++A    NG
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADRVKVNFFD 125
               LDGR I VD++  K        I  G P   + R + +++D
Sbjct:   182 MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRR-DYYD 223


>UNIPROTKB|E2RD37 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
            ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
            NextBio:20853966 Uniprot:E2RD37
        Length = 288

 Score = 167 (63.8 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 38/103 (36%), Positives = 60/103 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG + + +IV D+ S +S+GF FV F + ++A++A    NG
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADRVKVNFFD 125
               LDGR I VD++  K        I  G P   + R + +++D
Sbjct:   182 MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRR-DYYD 223


>UNIPROTKB|P62995 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
            transesterification reactions" evidence=TAS] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
            GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
            EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
            IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
            RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
            PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
            PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
            IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
            DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
            Ensembl:ENST00000342294 Ensembl:ENST00000382191
            Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
            KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
            H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
            neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
            PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
            GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
            Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
        Length = 288

 Score = 167 (63.8 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 38/103 (36%), Positives = 60/103 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG + + +IV D+ S +S+GF FV F + ++A++A    NG
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADRVKVNFFD 125
               LDGR I VD++  K        I  G P   + R + +++D
Sbjct:   182 MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRR-DYYD 223


>MGI|MGI:106016 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
            EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
            RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
            UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
            STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
            Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
            KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
            Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
            Uniprot:P62996
        Length = 288

 Score = 167 (63.8 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 38/103 (36%), Positives = 60/103 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG + + +IV D+ S +S+GF FV F + ++A++A    NG
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADRVKVNFFD 125
               LDGR I VD++  K        I  G P   + R + +++D
Sbjct:   182 MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRR-DYYD 223


>RGD|619886 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000302 "response to reactive oxygen species"
            evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
            GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
            RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
            SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
            PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
            KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
            Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
        Length = 288

 Score = 167 (63.8 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 38/103 (36%), Positives = 60/103 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG + + +IV D+ S +S+GF FV F + ++A++A    NG
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADRVKVNFFD 125
               LDGR I VD++  K        I  G P   + R + +++D
Sbjct:   182 MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRR-DYYD 223


>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
            symbol:tra2a "transformer-2 alpha" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
            UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
            Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
            InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
        Length = 297

 Score = 167 (63.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 36/90 (40%), Positives = 52/90 (57%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG +   N+V D+ + +S+GF FV F   ++A++A+   NG
Sbjct:   139 VFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERANG 198

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
               LDGR I VDY+  K        I  G P
Sbjct:   199 MELDGRRIRVDYSITKRPHTPTPGIYMGRP 228


>UNIPROTKB|F1NPM7 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
            OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
            Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
        Length = 277

 Score = 165 (63.1 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG +   N+V D+ + +S+GF FV F   +++++A+   NG
Sbjct:   125 VFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANG 184

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
               LDGR I VDY+  K +      I  G P
Sbjct:   185 MELDGRRIRVDYSITKRAHTPTPGIYMGRP 214


>UNIPROTKB|B4DQI6 [details] [associations]
            symbol:TRA2A "cDNA FLJ50614, highly similar to
            Transformer-2 protein homolog" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
            UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
            EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
            Uniprot:B4DQI6
        Length = 180

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG +   N+V D+ + +S+GF FV F   +++++A+   NG
Sbjct:    22 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 81

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
               LDGR I VDY+  K +      I  G P
Sbjct:    82 MELDGRRIRVDYSITKRAHTPTPGIYMGRP 111


>UNIPROTKB|B4DUA9 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
            EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
            SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
        Length = 181

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG +   N+V D+ + +S+GF FV F   +++++A+   NG
Sbjct:    22 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 81

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
               LDGR I VDY+  K +      I  G P
Sbjct:    82 MELDGRRIRVDYSITKRAHTPTPGIYMGRP 111


>TAIR|locus:2171539 [details] [associations]
            symbol:RPS19 "ribosomal protein S19" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
            constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
            "translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
            subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
            elongation" evidence=RCA] [GO:0005763 "mitochondrial small
            ribosomal subunit" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
            InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
            PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
            GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
            SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
            EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
            PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
            ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
            PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
            KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
            PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
            Uniprot:P39697
        Length = 212

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 33/75 (44%), Positives = 48/75 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+ GLS  T    L DAFS +  V EA ++ ++V+ +S+G+GFV F S + A  A+S MN
Sbjct:    34 YIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMN 93

Query:    82 GKTLDGRVIVVDYAK 96
             G+ L+G  I V+ AK
Sbjct:    94 GQELNGFNISVNVAK 108


>UNIPROTKB|I3LBN9 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
            Uniprot:I3LBN9
        Length = 280

 Score = 165 (63.1 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 38/103 (36%), Positives = 59/103 (57%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+   L + FS+YG + + +IV D+ S +S+GF FV F + ++A++A    NG
Sbjct:   114 VFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 173

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADRVKVNFFD 125
               LDGR I VD++  K        I  G P   + R + +++D
Sbjct:   174 MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRR-DYYD 215


>RGD|1310759 [details] [associations]
            symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
            RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
            GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
            OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
        Length = 630

 Score = 161 (61.7 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 33/77 (42%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        +K L+  F ++GQV+   ++ D    KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   194 YIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   253 GKELNGKHIYVGPAQKK 269

 Score = 131 (51.2 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L+    NK L D FS +G ++   +V D   + SKG GFV F + E AE+A+ +MN
Sbjct:   102 FIKNLNKTIDNKALYDTFSAFGNILSCKVVCDE--NGSKGHGFVHFETEEAAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGQFKSR 176

 Score = 126 (49.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +    ++ +    +SKGFGFV F+S EEA KA+SEMN
Sbjct:   297 YVKNLDDGIDDERLQKEFSPFGTITSTKVMTE--GGRSKGFGFVCFSSPEEATKAVSEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVATKPLYVALAQRK 371

 Score = 97 (39.2 bits), Expect = 0.00058, P = 0.00058
 Identities = 25/91 (27%), Positives = 45/91 (49%)

Query:    18 CPLC--YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEK 75
             CP+   YV  L    +   L + FS  G ++   +  D ++ +S G+  V F    +AE+
Sbjct:     8 CPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAER 67

Query:    76 ALSEMNGKTLDGRVIVVDYAKPKTSFR-SGM 105
             AL  MN   + G+ + + +++   S R SG+
Sbjct:    68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGV 98

 Score = 35 (17.4 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query:    95 AKPKTSFRSGMPIARGPPESIA 116
             A PK+SF +  P +   P+ +A
Sbjct:   455 AAPKSSFTTVRPSSSHVPQVMA 476


>UNIPROTKB|P0DJD4 [details] [associations]
            symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
            family 1 member C" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
            IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
            CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
            EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
            EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
            GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
            Uniprot:P0DJD4
        Length = 496

 Score = 171 (65.3 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 39/97 (40%), Positives = 60/97 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F ++G + E  ++ DR S KS+GF F+TF +  +A+ A  +MN
Sbjct:    11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKDMN 69

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADR 118
             GK+L G+ I V+ A+ K SF+SG    R PP S  +R
Sbjct:    70 GKSLHGKAIKVEQAQ-KPSFQSGG--RRRPPASSRNR 103


>UNIPROTKB|J3KQ82 [details] [associations]
            symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
            family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
            EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
            ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
            Ensembl:ENST00000454978 Uniprot:J3KQ82
        Length = 459

 Score = 169 (64.5 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 39/97 (40%), Positives = 59/97 (60%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F ++G + E  ++ DR S KS+GF F+TF +  +A+ A  +MN
Sbjct:    11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKDMN 69

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADR 118
             G +L G+ I V+ AK K SF+SG    R PP S  +R
Sbjct:    70 GTSLHGKAIKVEQAK-KPSFQSGG--RRRPPASSRNR 103


>UNIPROTKB|H0YCC8 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000474378 Uniprot:H0YCC8
        Length = 197

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FSQ+G+ +   ++ D  + KSKGFGFV++  HE+A KA+ EMN
Sbjct:   107 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 165

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G++I V  A+ K
Sbjct:   166 GKEISGKIIFVGRAQKK 182


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GK 83
             GK
Sbjct:    69 GK 70


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLSF T+ + L   FS+YGQ+ E  +V DR + +S+GFGFVTF + ++A+ A+  MN
Sbjct:     9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query:    82 GK 83
             GK
Sbjct:    69 GK 70


>UNIPROTKB|E2R4B2 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
            Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
        Length = 278

 Score = 163 (62.4 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG +   N+V D+ + +S+GF FV F   +++++A+   NG
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
               LDGR I VDY+  K +      I  G P
Sbjct:   183 MELDGRRIRVDYSITKRAHTPTPGIYMGRP 212


>UNIPROTKB|Q06AA6 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
            SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
            Uniprot:Q06AA6
        Length = 279

 Score = 163 (62.4 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG +   N+V D+ + +S+GF FV F   +++++A+   NG
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
               LDGR I VDY+  K +      I  G P
Sbjct:   183 MELDGRRIRVDYSITKRAHTPTPGIYMGRP 212


>UNIPROTKB|Q2KJ71 [details] [associations]
            symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
            OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
            IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
            STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
            KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
        Length = 281

 Score = 163 (62.4 bits), Expect = 7.1e-12, P = 7.1e-12
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG +   N+V D+ + +S+GF FV F   +++++A+   NG
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
               LDGR I VDY+  K +      I  G P
Sbjct:   183 MELDGRRIRVDYSITKRAHTPTPGIYMGRP 212


>MGI|MGI:1933972 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0042802 "identical protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
            IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
            SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
            PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
            CleanEx:MM_TRA2A Genevestigator:Q6PFR5
            GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
        Length = 281

 Score = 163 (62.4 bits), Expect = 7.1e-12, P = 7.1e-12
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG +   N+V D+ + +S+GF FV F   +++++A+   NG
Sbjct:   121 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 180

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
               LDGR I VDY+  K +      I  G P
Sbjct:   181 MELDGRRIRVDYSITKRAHTPTPGIYMGRP 210


>UNIPROTKB|Q13595 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
            IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
            UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
            IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
            DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
            Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
            CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
            MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
            HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
            OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
            NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
            GermOnline:ENSG00000164548 Uniprot:Q13595
        Length = 282

 Score = 163 (62.4 bits), Expect = 7.2e-12, P = 7.2e-12
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG +   N+V D+ + +S+GF FV F   +++++A+   NG
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
               LDGR I VDY+  K +      I  G P
Sbjct:   183 MELDGRRIRVDYSITKRAHTPTPGIYMGRP 212


>RGD|1562563 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0042802 "identical protein binding"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
            UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
            Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
            Uniprot:B1WC25
        Length = 282

 Score = 163 (62.4 bits), Expect = 7.2e-12, P = 7.2e-12
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG +   N+V D+ + +S+GF FV F   +++++A+   NG
Sbjct:   121 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 180

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIARGPP 112
               LDGR I VDY+  K +      I  G P
Sbjct:   181 MELDGRRIRVDYSITKRAHTPTPGIYMGRP 210


>UNIPROTKB|Q15415 [details] [associations]
            symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
            family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
            [GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
            MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
            EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
            EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
            RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
            HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
            PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
            DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
            Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
            KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
            CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
            HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
            PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
            NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
            Uniprot:Q15415
        Length = 496

 Score = 169 (64.5 bits), Expect = 7.3e-12, P = 7.3e-12
 Identities = 39/97 (40%), Positives = 59/97 (60%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F ++G + E  ++ DR S KS+GF F+TF +  +A+ A  +MN
Sbjct:    11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKDMN 69

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADR 118
             G +L G+ I V+ AK K SF+SG    R PP S  +R
Sbjct:    70 GTSLHGKAIKVEQAK-KPSFQSGG--RRRPPASSRNR 103


>TAIR|locus:2027438 [details] [associations]
            symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
            evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
            GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
            EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
            UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
            SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
            EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
            GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
            OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
            Genevestigator:Q9FZ84 Uniprot:Q9FZ84
        Length = 155

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 34/71 (47%), Positives = 47/71 (66%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T  + L +AF  +G++V+A +V+DR S  S+GFGFVT+ S E A  A+  M 
Sbjct:    39 FVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQ 98

Query:    82 GKTLDGRVIVV 92
              K LDGR+I V
Sbjct:    99 NKELDGRIIGV 109


>TAIR|locus:2168133 [details] [associations]
            symbol:AT5G59860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00539298
            RefSeq:NP_200794.1 UniGene:At.66722 ProteinModelPortal:F4JXD2
            SMR:F4JXD2 EnsemblPlants:AT5G59860.1 GeneID:836108
            KEGG:ath:AT5G59860 Uniprot:F4JXD2
        Length = 157

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 34/84 (40%), Positives = 55/84 (65%)

Query:    24 AGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGK 83
             +GLS YT+++ L   F+ +     A ++ D+ + + KGFGF+TF S ++A+KAL  +NGK
Sbjct:    76 SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130

Query:    84 TLDGRVIVVDYAK----PKTSFRS 103
              ++GR+I V+ AK    P TS +S
Sbjct:   131 IVNGRLIFVETAKEVEAPTTSLKS 154


>UNIPROTKB|P0CB38 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
            EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
            ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
            DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
            UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
            neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
            Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
        Length = 370

 Score = 165 (63.1 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 33/77 (42%), Positives = 50/77 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D FS+YG+ +   ++ D  S KSKGFGFV+F SHE A+KA+ EMN
Sbjct:   193 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMN 251

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ ++G++I V  A+ K
Sbjct:   252 GRDINGQLIFVGRAQKK 268

 Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 23/75 (30%), Positives = 43/75 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L + FS +G +    ++ +    +SKGFG + F+S E+A KA++EMN
Sbjct:   296 YIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMN 353

Query:    82 GKTLDGRVIVVDYAK 96
             G+ L  + + +  A+
Sbjct:   354 GRILGSKPLSIALAQ 368

 Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 25/71 (35%), Positives = 41/71 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L + FS +G+++ + ++ D     SKG+ FV F +   A++A+ EMN
Sbjct:   101 FIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMN 158

Query:    82 GKTLDG-RVIV 91
             GK L G +V V
Sbjct:   159 GKLLKGCKVFV 169


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 163 (62.4 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/77 (41%), Positives = 51/77 (66%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L +   N  L   FS++G+VVEA +V DR + +S+GFGFVT +  +E  +A+S ++
Sbjct:   247 YVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALD 306

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ L+GR I V+ A+ +
Sbjct:   307 GQNLEGRAIRVNVAEER 323

 Score = 149 (57.5 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 30/79 (37%), Positives = 52/79 (65%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L++  +++ L+  F Q G V  A ++ +R +D+S+GFGFVT +S +EAE A+ + N
Sbjct:   153 FVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 212

Query:    82 GKTLDGRVIVVDYAKPKTS 100
                L+GR++ V+ A P+ S
Sbjct:   213 RYDLNGRLLTVNKAAPRGS 231


>UNIPROTKB|J3KTH5 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
            EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
            RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
            Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
            Uniprot:J3KTH5
        Length = 428

 Score = 165 (63.1 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 33/77 (42%), Positives = 50/77 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D FS+YG+ +   ++ D  S KSKGFGFV+F SHE A+KA+ EMN
Sbjct:   251 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMN 309

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ ++G++I V  A+ K
Sbjct:   310 GRDINGQLIFVGRAQKK 326

 Score = 116 (45.9 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 23/75 (30%), Positives = 43/75 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L + FS +G +    ++ +    +SKGFG + F+S E+A KA++EMN
Sbjct:   354 YIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMN 411

Query:    82 GKTLDGRVIVVDYAK 96
             G+ L  + + +  A+
Sbjct:   412 GRILGSKPLSIALAQ 426

 Score = 115 (45.5 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 25/71 (35%), Positives = 41/71 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L + FS +G+++ + ++ D     SKG+ FV F +   A++A+ EMN
Sbjct:   159 FIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMN 216

Query:    82 GKTLDG-RVIV 91
             GK L G +V V
Sbjct:   217 GKLLKGCKVFV 227


>UNIPROTKB|H0YBQ4 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
            Uniprot:H0YBQ4
        Length = 258

 Score = 158 (60.7 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:    27 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 85

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:    86 GKELNGKQIYVGRAQKK 102

 Score = 132 (51.5 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   130 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 187

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   188 GRIVATKPLYVALAQRK 204


>TAIR|locus:2179939 [details] [associations]
            symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
            GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
            SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
            ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
            RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
            SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
            EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
            TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
            ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
        Length = 310

 Score = 161 (61.7 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 29/77 (37%), Positives = 53/77 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS   +++ L  AFS++G +++  I+++R + +S+GFGF+TFA     ++++ EM+
Sbjct:    10 FVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMH 69

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+    RVI V+ A+PK
Sbjct:    70 GRDFGDRVISVNRAEPK 86


>UNIPROTKB|H0YAP2 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
            Uniprot:H0YAP2
        Length = 131

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 31/64 (48%), Positives = 43/64 (67%)

Query:    35 LSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94
             L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMNGK L+G+ I V  
Sbjct:     5 LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 63

Query:    95 AKPK 98
             A+ K
Sbjct:    64 AQKK 67


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 36/100 (36%), Positives = 55/100 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+    + L DAFS +G+V E  I  D+ S +S+GFGFV FA   +A  A   M+
Sbjct:    44 FIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMD 103

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADRVKV 121
             GK L GR + + +A  +   R G  +     +S  +R +V
Sbjct:   104 GKGLLGRPLRISFALERV--RGGPVVVPRLGKSKRERERV 141


>TAIR|locus:2164042 [details] [associations]
            symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] [GO:0006457 "protein folding"
            evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0042542 "response to hydrogen peroxide" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
            HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
            ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
            GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
            HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
            ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
        Length = 169

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 34/91 (37%), Positives = 53/91 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV GL + T  +GL + F ++G+++  N+V DR +D+S+G+GFVTF   E A +A  + N
Sbjct:    16 YVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPN 75

Query:    82 GKTLDGRVIVVDYA------KPKTSFRSGMP 106
               T++GR+     A      KP  S  S +P
Sbjct:    76 -PTIEGRITNCKLAFVGAKVKPNQSQPSNLP 105


>UNIPROTKB|E2RND1 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
        Length = 644

 Score = 166 (63.5 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 33/82 (40%), Positives = 51/82 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L      +GL D FS++G+++   ++ D  S  S+GFGFV F  HEEA+KA+ +MN
Sbjct:   194 YVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDMN 252

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK + GR++ V  A+ +   +S
Sbjct:   253 GKEVSGRLLYVGRAQKRVERQS 274

 Score = 138 (53.6 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 28/77 (36%), Positives = 44/77 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D     S+GFGFV F +HE A++A++ MN
Sbjct:   102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQQAITTMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V + K +
Sbjct:   160 GMLLNDRKVFVGHFKSR 176

 Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 31/77 (40%), Positives = 44/77 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS YG +  A ++ +     SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ L  + + V  A+ K
Sbjct:   355 GRILGTKPLYVALAQRK 371


>UNIPROTKB|H3BNY3 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
            HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
            Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
        Length = 347

 Score = 161 (61.7 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 33/80 (41%), Positives = 48/80 (60%)

Query:    19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS 78
             P  Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ 
Sbjct:   191 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249

Query:    79 EMNGKTLDGRVIVVDYAKPK 98
             EMNGK L+G+ I V  A+ K
Sbjct:   250 EMNGKELNGKQIYVGRAQKK 269

 Score = 150 (57.9 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L    +NK L D  S +G ++  N+V D   + SKG+GFV F +HE AE+A+ +MN
Sbjct:   102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+GR + V   K +
Sbjct:   160 GMLLNGRKVFVGQFKSR 176

 Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEA 73
             YV  L     ++ L  AFS +G +  A ++M+    +SKGFGFV F+S EEA
Sbjct:   297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEA 346


>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
            symbol:tra2b "transformer 2 beta homolog
            (Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
            HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
            RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
            SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
            InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
            Uniprot:Q7ZUG9
        Length = 278

 Score = 158 (60.7 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 39/102 (38%), Positives = 56/102 (54%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V GLS YT+ + L + FS+YG + +  IV D+ S +S+GF  V F + E++++A    NG
Sbjct:   127 VFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENREDSKEAKERANG 186

Query:    83 KTLDGRVIVVDYA------KPKTSFRSGMPIARGPPESIADR 118
               LDGR I VDY+       P      G P   G P S++ R
Sbjct:   187 MELDGRRIRVDYSITKGPHTPTPGIYMGRPTYGGGP-SVSRR 227


>UNIPROTKB|Q98SP8 [details] [associations]
            symbol:epabp-a "Embryonic polyadenylate-binding protein A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
            embryonic development" evidence=IEP] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
            HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
            RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
            SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
            Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
        Length = 629

 Score = 165 (63.1 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 33/82 (40%), Positives = 52/82 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        +K L + FS +G  +   ++MD  S +S+GFGFV + +HEEA+KA+SEMN
Sbjct:   194 YIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMN 252

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK ++GR+I V  A+ +   +S
Sbjct:   253 GKEVNGRMIYVGRAQKRIERQS 274

 Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D     S+G+GFV F +HE A +A+  MN
Sbjct:   102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V + K +
Sbjct:   160 GMLLNDRKVFVGHFKSR 176

 Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 29/77 (37%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     +  L   F  YG +  A ++ +     SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVSTKPLYVALAQRK 371


>UNIPROTKB|E2R9I0 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
            Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
        Length = 631

 Score = 165 (63.1 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FSQ+G+ +   ++ D  S KSKGFGFV++  HE+A KA+ EMN
Sbjct:   194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G+VI V  A+ K
Sbjct:   253 GKEISGKVIFVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L   FS +G +  A ++++    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGSKPLYVALAQRK 371

 Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+ FV F + E A+KA+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L    +   L + FS  G V+   +  D ++ +S G+ +V F    +AE+AL  MN
Sbjct:    14 YVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query:    82 GKTLDGRVIVVDYAKPKTSFR-SGM 105
                + G+ I + +++   S R SG+
Sbjct:    74 FDVIKGKPIRIMWSQRDPSLRKSGV 98


>UNIPROTKB|F1SV06 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
        Length = 631

 Score = 165 (63.1 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FSQ+G+ +   ++ D  S KSKGFGFV++  HE+A KA+ EMN
Sbjct:   194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G+VI V  A+ K
Sbjct:   253 GKEISGKVIFVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L   FS +G +  A ++++    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGSKPLYVALAQRK 371

 Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+ FV F + E A+KA+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L    +   L + FS  G V+   +  D ++ +S G+ +V F    +AE+AL  MN
Sbjct:    14 YVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query:    82 GKTLDGRVIVVDYAKPKTSFR-SGM 105
                + G+ I + +++   S R SG+
Sbjct:    74 FDVIKGKPIRIMWSQRDPSLRKSGV 98


>UNIPROTKB|E2R9I1 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
            InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
            Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
        Length = 700

 Score = 165 (63.1 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FSQ+G+ +   ++ D  S KSKGFGFV++  HE+A KA+ EMN
Sbjct:   234 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 292

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G+VI V  A+ K
Sbjct:   293 GKEISGKVIFVGRAQKK 309

 Score = 133 (51.9 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L   FS +G +  A ++++    +SKGFGFV F+S EEA KA++EMN
Sbjct:   337 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 394

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   395 GRIVGSKPLYVALAQRK 411

 Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+ FV F + E A+KA+ +MN
Sbjct:   142 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMN 199

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   200 GMLLNDRKVFVGRFKSR 216


>UNIPROTKB|K7GQ39 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
        Length = 101

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 30/81 (37%), Positives = 50/81 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    13 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 72

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
             GK +      +   KP+++ R
Sbjct:    73 GKGVPSSTRFLQQFKPRSTKR 93


>UNIPROTKB|Q6GR16 [details] [associations]
            symbol:epabp-b "Embryonic polyadenylate-binding protein B"
            species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
            "chordate embryonic development" evidence=ISS] [GO:0043621 "protein
            self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
            RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
            SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
            Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
        Length = 629

 Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 32/83 (38%), Positives = 52/83 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        +K L + FS +G  +   ++MD  S +S+GFGFV + +HEEA+KA++EMN
Sbjct:   194 YIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMN 252

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG 104
             GK ++GR++ V  A+ +   R G
Sbjct:   253 GKEVNGRMVYVGRAQKRIE-RQG 274

 Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D     S+G+GFV F + E A +A+  MN
Sbjct:   102 FIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V + K +
Sbjct:   160 GMLLNDRKVFVGHFKSR 176

 Score = 123 (48.4 bits), Expect = 9.5e-07, P = 9.5e-07
 Identities = 29/77 (37%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     +  L   FS YG +    ++ +     SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVSTKPLYVALAQRK 371


>RGD|1311201 [details] [associations]
            symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
            IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
            MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
            KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
            NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
        Length = 643

 Score = 164 (62.8 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L D FS++G  +   ++ D  S KSKGFGFV+F  HE+A KA+ EMN
Sbjct:   194 YIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   253 GKDLNGKQIYVGRAQKK 269

 Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L     +K L D FS +G ++   +V D   + SKG+GFV F + EEAE+A+ +MN
Sbjct:   102 FVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMFLNDRKVFVGRFKSR 176

 Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 30/77 (38%), Positives = 45/77 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A + M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   307 YVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEMN 364

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   365 GRIVATKPLYVALAQRK 381

 Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L    +   L + FS  G ++   +  DR + +S G+  V F   E+AE+AL  MN
Sbjct:    14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMN 73

Query:    82 GKTLDGRVIVVDYAKPKTSFR-SGM 105
                + G+ + + +++   S R SG+
Sbjct:    74 FDVIKGKPVRIMWSQRDPSLRKSGV 98


>UNIPROTKB|A4IFC3 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
            OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
            IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
            Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
            InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
        Length = 645

 Score = 164 (62.8 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FSQ+G+ +   ++ D  S KSKGFGFV++  HE+A KA+ EMN
Sbjct:   194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G+VI V  A+ K
Sbjct:   253 GKEITGKVIFVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L   FS +G +  A ++++    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGSKPLYVALAQRK 371

 Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+ FV F + E A+KA+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L    +   L + FS  G V+   +  D ++ +S G+ +V F    +AE+AL  MN
Sbjct:    14 YVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query:    82 GKTLDGRVIVVDYAKPKTSFR-SGM 105
                + G+ I + +++   S R SG+
Sbjct:    74 FDVIKGKPIRIMWSQRDPSLRKSGV 98


>ZFIN|ZDB-GENE-050320-86 [details] [associations]
            symbol:msi1 "musashi homolog 1 (Drosophila)"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
            nervous system development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
        Length = 349

 Score = 159 (61.0 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 38/114 (33%), Positives = 65/114 (57%)

Query:    18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKAL 77
             C + ++ GLS+ T+ +GL D F ++G+V E+ ++ D V+ +S+GFGFVTF      +K L
Sbjct:    20 CKM-FIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVL 78

Query:    78 S----EMNGKTLDGRVIVVDYAKPKTSFRSGMPIARG-PPESIADRVKVNFFDE 126
             +    E++ KT+D +V     A+PK   R+      G    +  + VK  +FD+
Sbjct:    79 AQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVK-QYFDQ 131

 Score = 124 (48.7 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 24/77 (31%), Positives = 49/77 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T+ + +   F Q+G+V +A ++ D+ +++ +GFGFVTF + +  EK + E++
Sbjct:   112 FVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIH 170

Query:    82 GKTLDGRVIVVDYAKPK 98
                ++ +++    A+PK
Sbjct:   171 FHEINNKMVECKKAQPK 187


>UNIPROTKB|J3KTC1 [details] [associations]
            symbol:MSI2 "RNA-binding protein Musashi homolog 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
            EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
        Length = 141

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 36/110 (32%), Positives = 61/110 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS--- 78
             ++ GLS+ TS   L D FS++G++ E  ++ D  + +S+GFGFVTFA     +K L    
Sbjct:    20 FIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPH 79

Query:    79 -EMNGKTLDGRVIVVDYAKPKTSFRSGMPIARG-PPESIADRVKVNFFDE 126
              E++ KT+D +V     A+PK   R+      G    ++ + VK  +F++
Sbjct:    80 HELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVK-QYFEQ 128


>TAIR|locus:2164082 [details] [associations]
            symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
            HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
            ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
            GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
            InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
            ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
        Length = 100

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YVAGL + T  +GL   F ++G++V A +V D  + +SKGFGFVTF   E A +A    N
Sbjct:    12 YVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPN 71

Query:    82 GKTLDGRVI 90
               T+DGR +
Sbjct:    72 -HTIDGRTV 79


>ASPGD|ASPL0000078272 [details] [associations]
            symbol:AN4330 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
            OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
            ProteinModelPortal:Q5B550 STRING:Q5B550
            EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
            Uniprot:Q5B550
        Length = 724

 Score = 164 (62.8 bits), Expect = 4.6e-11, P = 4.6e-11
 Identities = 32/77 (41%), Positives = 52/77 (67%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L    +N+ L++ FSQ   +  A +V+D  + +SKG+GFVTFA  E+A+ AL E+N
Sbjct:    40 FIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEELN 99

Query:    82 GKTLDGRVIVVDYAKPK 98
             G T +G+ I V+YA+P+
Sbjct:   100 GSTFEGKKIKVEYAQPR 116

 Score = 111 (44.1 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query:    35 LSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94
             L+  F  +G+V    + + +   +  GFGFV     + AEKAL  +NGK +DGR + VD+
Sbjct:   167 LAAHFRSFGKV--KYVTLPKKGSQLAGFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDW 224

Query:    95 AKPK 98
             A  K
Sbjct:   225 AVEK 228


>WB|WBGene00006321 [details] [associations]
            symbol:sup-12 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
            "regulation of actin cytoskeleton organization" evidence=IGI]
            [GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
            binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
            intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
            complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
            GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 153 (58.9 bits), Expect = 5.4e-11, P = 5.4e-11
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL ++TS+K L + F Q+G + EA ++ DR + KS+G+GFVT      AE+A  + N
Sbjct:    38 FVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPN 97

Query:    82 GKTLDGRVIVVD--Y--AKPKTS 100
                +DGR   V+  Y  AKP+T+
Sbjct:    98 -PIIDGRKANVNLAYLGAKPRTN 119


>UNIPROTKB|O45189 [details] [associations]
            symbol:sup-12 "Protein SUP-12, isoform a" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
            Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
            GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 153 (58.9 bits), Expect = 5.4e-11, P = 5.4e-11
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL ++TS+K L + F Q+G + EA ++ DR + KS+G+GFVT      AE+A  + N
Sbjct:    38 FVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPN 97

Query:    82 GKTLDGRVIVVD--Y--AKPKTS 100
                +DGR   V+  Y  AKP+T+
Sbjct:    98 -PIIDGRKANVNLAYLGAKPRTN 119


>TAIR|locus:2179624 [details] [associations]
            symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
            UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
            EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
            OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
        Length = 172

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 32/81 (39%), Positives = 47/81 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V G S   S   L   FS++GQV    I+ +  + +S G+G+V F S E+A+ A+  MN
Sbjct:    80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
             GK  DGR I+V + +P  S R
Sbjct:   140 GKFFDGRFILVKFGQPGLSRR 160


>UNIPROTKB|Q6DEY7 [details] [associations]
            symbol:epabp "Embryonic polyadenylate-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
            evidence=ISS] [GO:0043009 "chordate embryonic development"
            evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
            eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
            ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
            GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
            HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
            Uniprot:Q6DEY7
        Length = 629

 Score = 162 (62.1 bits), Expect = 6.2e-11, P = 6.2e-11
 Identities = 33/83 (39%), Positives = 51/83 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        +K L + FS +G  +   ++MD    +S+GFGFV + +HEEA+KA+SEMN
Sbjct:   194 YIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTG-RSRGFGFVNYGNHEEAQKAVSEMN 252

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG 104
             GK ++GR+I V  A+ +   R G
Sbjct:   253 GKEVNGRMIYVGRAQKRIE-RQG 274

 Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 30/77 (38%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     +  L   FS YG +  A ++ +     SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVSTKPLYVALAQRK 371

 Score = 125 (49.1 bits), Expect = 5.8e-07, P = 5.8e-07
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D     S+G+GFV F + E A +A+  MN
Sbjct:   102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V + K +
Sbjct:   160 GMLLNDRKVFVGHFKSR 176


>UNIPROTKB|H0Y5F5 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000421687 Uniprot:H0Y5F5
        Length = 550

 Score = 161 (61.7 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FSQ+G+ +   ++ D  + KSKGFGFV++  HE+A KA+ EMN
Sbjct:    96 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 154

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G++I V  A+ K
Sbjct:   155 GKEISGKIIFVGRAQKK 171

 Score = 133 (51.9 bits), Expect = 6.6e-08, P = 6.6e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L   FS +G +  A ++++    +SKGFGFV F+S EEA KA++EMN
Sbjct:   199 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 256

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   257 GRIVGSKPLYVALAQRK 273

 Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+ FV F + E A+KA+ +MN
Sbjct:     4 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMN 61

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:    62 GMLLNDRKVFVGRFKSR 78


>UNIPROTKB|G4MY43 [details] [associations]
            symbol:MGG_01268 "Nuclear localization sequence binding
            protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
            ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
            KEGG:mgr:MGG_01268 Uniprot:G4MY43
        Length = 486

 Score = 160 (61.4 bits), Expect = 6.6e-11, P = 6.6e-11
 Identities = 34/79 (43%), Positives = 48/79 (60%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  LS+   +  L++ F   G V  A ++ DR S +SKGFG+V FA+ EEAEKA  E  
Sbjct:   242 FVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQ 301

Query:    82 GKTLDGRVIVVDYAKPKTS 100
             G  +DGR I VD++  K +
Sbjct:   302 GAFIDGREIKVDFSTGKAT 320

 Score = 132 (51.5 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 26/83 (31%), Positives = 46/83 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L F      +   FS+  +V    +  ++ S + KGFG+VTF S E+A+ A  ++N
Sbjct:   345 FVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLN 404

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG 104
             G++++GR   +DY+ P+     G
Sbjct:   405 GQSINGRNCRLDYSTPRPPREDG 427


>UNIPROTKB|F1SDR6 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
        Length = 608

 Score = 161 (61.7 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 31/77 (40%), Positives = 49/77 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L      + L D FSQ+G+++   ++ D  S  S+GFGFV F  HE+A+KA+++MN
Sbjct:   194 YVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + GR++ V  A+ +
Sbjct:   253 GKEVSGRLLYVGRAQKR 269

 Score = 135 (52.6 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D     S+GFGFV F +HE A+ A+  MN
Sbjct:   102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQNAIRTMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V + K +
Sbjct:   160 GMLLNDRKVFVGHFKSR 176

 Score = 127 (49.8 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   F+ YG +  A ++ +     SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDSIDDEKLRKEFAPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGTKPLYVALAQRK 371


>UNIPROTKB|B1ANR0 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
            EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
            HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
            UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
            SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
        Length = 615

 Score = 161 (61.7 bits), Expect = 7.6e-11, P = 7.6e-11
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FSQ+G+ +   ++ D  + KSKGFGFV++  HE+A KA+ EMN
Sbjct:   194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G++I V  A+ K
Sbjct:   253 GKEISGKIIFVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L   FS +G +  A ++++    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGSKPLYVALAQRK 371

 Score = 127 (49.8 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+ FV F + E A+KA+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L    +   L + FS  G V+   +  D ++ +S G+ +V F    +AE+AL  MN
Sbjct:    14 YVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query:    82 GKTLDGRVIVVDYAKPKTSFR-SGM 105
                + G+ I + +++   S R SG+
Sbjct:    74 FDVIKGKPIRIMWSQRDPSLRKSGV 98


>TAIR|locus:2079874 [details] [associations]
            symbol:CP33 "chloroplast RNA-binding protein 33"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
            "ovule development" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
            UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
            EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
            ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
            PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
            KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
            PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
            Uniprot:Q39061
        Length = 329

 Score = 156 (60.0 bits), Expect = 7.6e-11, P = 7.6e-11
 Identities = 30/73 (41%), Positives = 46/73 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L +  ++  LS  F + G VV+  IV D+V+D+S+GFGFVT  S EEA++A+   N
Sbjct:   119 YVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFN 178

Query:    82 GKTLDGRVIVVDY 94
                + GR + V++
Sbjct:   179 SSQIGGRTVKVNF 191

 Score = 140 (54.3 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 26/77 (33%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y   L +  +++GL DAF     V+ A ++ +R + +S+GFGF++F S E  + AL+ MN
Sbjct:   222 YAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  ++GR + ++ A  +
Sbjct:   282 GVEVEGRALRLNLASER 298


>TAIR|locus:2173338 [details] [associations]
            symbol:SC35 "ortholog of human splicing factor SC35"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
            "membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0030422 "production of siRNA involved in RNA interference"
            evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
            GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
            EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
            RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
            UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
            PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
            EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
            TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
            ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
        Length = 303

 Score = 155 (59.6 bits), Expect = 7.6e-11, P = 7.6e-11
 Identities = 37/113 (32%), Positives = 59/113 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  ++F T+   L   F++YG+VV+  I  DR +  S+GF FV +   +EA KA+  ++G
Sbjct:    20 VLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79

Query:    83 KTLDGRVIVVDYAK--PKTSFRSGMPIARGPPESIADRVKVNFFDEEPKTQKS 133
             + +DGR I V +AK  P     S   +   PP+S   R +       P+  +S
Sbjct:    80 RVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRS 132


>UNIPROTKB|Q9H361 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
            process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
            EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
            PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
            IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
            PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
            GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
            GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
            PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
            PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
            NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
            Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
        Length = 631

 Score = 161 (61.7 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 33/80 (41%), Positives = 48/80 (60%)

Query:    19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS 78
             P  Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ 
Sbjct:   191 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249

Query:    79 EMNGKTLDGRVIVVDYAKPK 98
             EMNGK L+G+ I V  A+ K
Sbjct:   250 EMNGKELNGKQIYVGRAQKK 269

 Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L    +NK L D  S +G ++  N+V D   + SKG+GFV F +HE AE+A+ +MN
Sbjct:   102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+GR + V   K +
Sbjct:   160 GMLLNGRKVFVGQFKSR 176

 Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L  AFS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVATKPLYVALAQRK 371


>UNIPROTKB|Q13310 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
            "cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
            binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
            coagulation" evidence=TAS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
            GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
            EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
            IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
            RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
            UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
            IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
            DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
            Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
            KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
            GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
            neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
            PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
            NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
            Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
        Length = 644

 Score = 161 (61.7 bits), Expect = 8.2e-11, P = 8.2e-11
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FSQ+G+ +   ++ D  + KSKGFGFV++  HE+A KA+ EMN
Sbjct:   194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G++I V  A+ K
Sbjct:   253 GKEISGKIIFVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L   FS +G +  A ++++    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGSKPLYVALAQRK 371

 Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+ FV F + E A+KA+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L    +   L + FS  G V+   +  D ++ +S G+ +V F    +AE+AL  MN
Sbjct:    14 YVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query:    82 GKTLDGRVIVVDYAKPKTSFR-SGM 105
                + G+ I + +++   S R SG+
Sbjct:    74 FDVIKGKPIRIMWSQRDPSLRKSGV 98


>TAIR|locus:2036520 [details] [associations]
            symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
            GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
            EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
            RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
            UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
            PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
            EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
            TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
            ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
        Length = 292

 Score = 154 (59.3 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 28/77 (36%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+  + + L   F +YG++ E  I++ R + + +GFGF+TF     A+ A+  M+
Sbjct:    15 FVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMH 74

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ L  +VI V+ A+PK
Sbjct:    75 GRELGNKVISVNKAEPK 91


>UNIPROTKB|B4DHE8 [details] [associations]
            symbol:MSI2 "RNA-binding protein Musashi homolog 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
            HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
            EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
            SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
            Uniprot:B4DHE8
        Length = 324

 Score = 155 (59.6 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 37/115 (32%), Positives = 63/115 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS--- 78
             ++ GLS+ TS   L D FS++G++ E  ++ D  + +S+GFGFVTFA     +K L    
Sbjct:     2 FIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPH 61

Query:    79 -EMNGKTLDGRVIVVDYAKPKTSFRSGMPIARG-PPESIADRVKVNFFDEEPKTQ 131
              E++ KT+D +V     A+PK   R+      G    ++ + VK  +F++  K +
Sbjct:    62 HELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVK-QYFEQFGKVE 115

 Score = 124 (48.7 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 30/93 (32%), Positives = 54/93 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T  + +   F Q+G+V +A ++ D+ +++ +GFGFVTF + +  EK + E++
Sbjct:    91 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIH 149

Query:    82 GKTLDGRVIVVDYAKPK-TSFRSGMP-IARGPP 112
                ++ +++    A+PK   F  G    ARG P
Sbjct:   150 FHEINNKMVECKKAQPKEVMFPPGTRGRARGLP 182


>UNIPROTKB|Q96DH6 [details] [associations]
            symbol:MSI2 "RNA-binding protein Musashi homolog 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
            "poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
            development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
            EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
            IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
            UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
            IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
            PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
            Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
            KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
            GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
            neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
            PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
            ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
            Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
        Length = 328

 Score = 155 (59.6 bits), Expect = 9.7e-11, P = 9.7e-11
 Identities = 37/115 (32%), Positives = 63/115 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS--- 78
             ++ GLS+ TS   L D FS++G++ E  ++ D  + +S+GFGFVTFA     +K L    
Sbjct:    24 FIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPH 83

Query:    79 -EMNGKTLDGRVIVVDYAKPKTSFRSGMPIARG-PPESIADRVKVNFFDEEPKTQ 131
              E++ KT+D +V     A+PK   R+      G    ++ + VK  +F++  K +
Sbjct:    84 HELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVK-QYFEQFGKVE 137

 Score = 124 (48.7 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 30/93 (32%), Positives = 54/93 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T  + +   F Q+G+V +A ++ D+ +++ +GFGFVTF + +  EK + E++
Sbjct:   113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIH 171

Query:    82 GKTLDGRVIVVDYAKPK-TSFRSGMP-IARGPP 112
                ++ +++    A+PK   F  G    ARG P
Sbjct:   172 FHEINNKMVECKKAQPKEVMFPPGTRGRARGLP 204


>UNIPROTKB|E1BWJ7 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
            EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
            RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
            Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
            OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
        Length = 632

 Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 30/82 (36%), Positives = 51/82 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        +  L + FS++G+ +   ++MD    +SKGFGFV F  HEEA+KA+++MN
Sbjct:   194 YIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTG-RSKGFGFVNFEKHEEAQKAVADMN 252

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             GK ++GR++ V  A+ +   +S
Sbjct:   253 GKEINGRMVYVGRAQKRLERQS 274

 Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS YG +  A ++ +     SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDERLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVSTKPLYVALAQRK 371

 Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + S+G GFV F + E A +A+  MN
Sbjct:   102 FIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V + K +
Sbjct:   160 GMLLNDRKVFVGHFKSR 176


>UNIPROTKB|Q9NW13 [details] [associations]
            symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
            EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
            EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
            RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
            SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
            DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
            PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
            UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
            HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
            neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
            HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
            OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
            GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
            CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
            Uniprot:Q9NW13
        Length = 759

 Score = 146 (56.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 33/86 (38%), Positives = 47/86 (54%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             +  LSF  S   L   F+Q+G V+E NI   +   K +GFGFV F +  EA KAL  MN 
Sbjct:   118 IRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKNLLEAGKALKGMNM 176

Query:    83 KTLDGRVIVVDYAKPKTSFRSGMPIA 108
             K + GR + VD+A  K  ++    ++
Sbjct:   177 KEIKGRTVAVDWAVAKDKYKDTQSVS 202

 Score = 107 (42.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L     ++ L + FSQ G V +  +V ++ S   +GFG+VTF+  E+ ++AL E+ 
Sbjct:     7 FVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEIT 66

Query:    82 GKTLDGRVIVVDYAKPK 98
               T +G  I V  AK K
Sbjct:    67 --TFEGCKINVTVAKKK 81

 Score = 104 (41.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 26/80 (32%), Positives = 41/80 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKAL---- 77
             ++  LSF +  + L +   Q+G++    IV+   ++ SKG  F  F + E A+K L    
Sbjct:   338 FIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAAS 397

Query:    78 --SEMNGKTLDGRVIVVDYA 95
               +E  G  LDGR + VD A
Sbjct:   398 PENEAGGLKLDGRQLKVDLA 417

 Score = 39 (18.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query:   105 MPIARGPPESIADRVKVN-FFDEEPKTQ 131
             +P  RGP   + D+ KV     ++PK Q
Sbjct:   673 LPSHRGPKIRLRDKGKVKPVHPKKPKPQ 700


>MGI|MGI:1923876 [details] [associations]
            symbol:Msi2 "musashi RNA-binding protein 2" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
            "polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
            EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
            EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
            IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
            UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
            SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
            PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
            GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
            OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
            Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
        Length = 346

 Score = 155 (59.6 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 37/115 (32%), Positives = 63/115 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS--- 78
             ++ GLS+ TS   L D FS++G++ E  ++ D  + +S+GFGFVTFA     +K L    
Sbjct:    24 FIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPH 83

Query:    79 -EMNGKTLDGRVIVVDYAKPKTSFRSGMPIARG-PPESIADRVKVNFFDEEPKTQ 131
              E++ KT+D +V     A+PK   R+      G    ++ + VK  +F++  K +
Sbjct:    84 HELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVK-QYFEQFGKVE 137

 Score = 124 (48.7 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 30/93 (32%), Positives = 54/93 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T  + +   F Q+G+V +A ++ D+ +++ +GFGFVTF + +  EK + E++
Sbjct:   113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIH 171

Query:    82 GKTLDGRVIVVDYAKPK-TSFRSGMP-IARGPP 112
                ++ +++    A+PK   F  G    ARG P
Sbjct:   172 FHEINNKMVECKKAQPKEVMFPPGTRGRARGLP 204


>UNIPROTKB|D4AC21 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
            ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
            ArrayExpress:D4AC21 Uniprot:D4AC21
        Length = 588

 Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FSQ+G+ +   ++ D  S KSKGFGFV++  HE+A KA+ EMN
Sbjct:   123 YIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMN 181

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G+ I V  A+ K
Sbjct:   182 GKEMSGKSIFVGRAQKK 198

 Score = 133 (51.9 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L   FS +G +  A ++++    +SKGFGFV F+S EEA KA++EMN
Sbjct:   226 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 283

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   284 GRIVGSKPLYVALAQRK 300

 Score = 125 (49.1 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 27/77 (35%), Positives = 41/77 (53%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+ FV F + E A KA+ +MN
Sbjct:    31 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMN 88

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:    89 GMLLNDRKVFVGRFKSR 105


>TAIR|locus:2176222 [details] [associations]
            symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
            SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
            SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
            EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
            RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
            UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
            STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
            EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
            KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
            PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
            Uniprot:Q9LU44
        Length = 804

 Score = 145 (56.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 35/92 (38%), Positives = 51/92 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     + GL + FS +G++V A ++ DRV+  SKG+GFV +A  + A  A+  MN
Sbjct:   483 YIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMN 542

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIAR-GPP 112
             G   +GR + V  A      +S  PIA  GPP
Sbjct:   543 GYRFEGRTLAVRIAG-----KSPPPIAPPGPP 569

 Score = 40 (19.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query:     2 LQQLLTLHVYICRNHFCPLC 21
             L++L TL+  I    FC LC
Sbjct:   347 LRELATLNGTIRDEEFCRLC 366


>CGD|CAL0005232 [details] [associations]
            symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
            eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
            ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
            GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
            Uniprot:Q5AB84
        Length = 400

 Score = 156 (60.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 34/81 (41%), Positives = 48/81 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  LS+   +  L   F   G V+ A ++M+R + KS+G+G+V F S   AEKAL EM 
Sbjct:   171 FVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQ 230

Query:    82 GKTLDGRVIVVDYA--KPKTS 100
             GK +DGR I +D +  KP  S
Sbjct:   231 GKEIDGRPINLDMSTGKPHAS 251

 Score = 143 (55.4 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 26/77 (33%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  LSF  +   L + F +YG V+   +     + + KGFG+V F+S +EA+ AL  MN
Sbjct:   273 FIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMN 332

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ ++GR   +D++ P+
Sbjct:   333 GEYIEGRPCRLDFSTPR 349


>UNIPROTKB|Q5AB84 [details] [associations]
            symbol:NSR1 "Potential nuclear localization sequence
            binding protein Nsr1p" species:237561 "Candida albicans SC5314"
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
            EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
            RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
            STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
            KEGG:cal:CaO19.6090 Uniprot:Q5AB84
        Length = 400

 Score = 156 (60.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 34/81 (41%), Positives = 48/81 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  LS+   +  L   F   G V+ A ++M+R + KS+G+G+V F S   AEKAL EM 
Sbjct:   171 FVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQ 230

Query:    82 GKTLDGRVIVVDYA--KPKTS 100
             GK +DGR I +D +  KP  S
Sbjct:   231 GKEIDGRPINLDMSTGKPHAS 251

 Score = 143 (55.4 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 26/77 (33%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  LSF  +   L + F +YG V+   +     + + KGFG+V F+S +EA+ AL  MN
Sbjct:   273 FIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMN 332

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ ++GR   +D++ P+
Sbjct:   333 GEYIEGRPCRLDFSTPR 349


>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
            symbol:msi2b "musashi homolog 2b (Drosophila)"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
            EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
            IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
            STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
            KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
            NextBio:20815041 Uniprot:Q7SXT6
        Length = 408

 Score = 156 (60.0 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 37/115 (32%), Positives = 64/115 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS--- 78
             ++ GLS+ TS   L D FS++G++ E  ++ D  + +S+GFGFVTFA     +K L+   
Sbjct:    24 FIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQPH 83

Query:    79 -EMNGKTLDGRVIVVDYAKPKTSFRSGMPIARG-PPESIADRVKVNFFDEEPKTQ 131
              E++ KT+D +V     A+PK   R+      G    ++ + VK  +F++  K +
Sbjct:    84 HELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVK-QYFEQFGKVE 137

 Score = 124 (48.7 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 30/93 (32%), Positives = 54/93 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T  + +   F Q+G+V +A ++ D+ +++ +GFGFVTF + +  EK + E++
Sbjct:   113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIH 171

Query:    82 GKTLDGRVIVVDYAKPK-TSFRSGMP-IARGPP 112
                ++ +++    A+PK   F  G    ARG P
Sbjct:   172 FHEINNKMVECKKAQPKEVMFPPGTRGRARGLP 204


>WB|WBGene00015943 [details] [associations]
            symbol:tiar-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
            GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
            GO:GO:0003676 EMBL:FO080599 HSSP:P11940
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
            NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
            SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
            EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
            OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
        Length = 408

 Score = 156 (60.0 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 31/77 (40%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  LS    N+ L +AF  +G V +A ++ D  + KSKG+GFV++   EEAE+A+ +MN
Sbjct:   138 FVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMN 197

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ L  R I  ++A  K
Sbjct:   198 GQWLGRRTIRTNWATRK 214


>UNIPROTKB|Q4VY17 [details] [associations]
            symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
            IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
            Ensembl:ENST00000537323 Uniprot:Q4VY17
        Length = 330

 Score = 154 (59.3 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L      +GL D FSQ+G+++   ++ D  S  S+ FGFV F  HEEA+KA+  MN
Sbjct:   194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + GR++    A+ +
Sbjct:   253 GKEVSGRLLYAGRAQKR 269

 Score = 134 (52.2 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +  D     S+GFGFV F +HE A++A++ MN
Sbjct:   102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V + K +
Sbjct:   160 GMLLNDRKVFVGHFKSR 176


>TAIR|locus:2173967 [details] [associations]
            symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
            EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
            UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
            EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
            KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
            PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
        Length = 460

 Score = 142 (55.0 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 29/77 (37%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ G+S+ T  + L D FS YG VVEA I+ DR + +++GFGF+ FA    +E+ +  M+
Sbjct:     9 FIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--MD 66

Query:    82 GKTLDGRVIVVDYAKPK 98
                +DGR +    A P+
Sbjct:    67 KHIIDGRTVEAKKAVPR 83

 Score = 115 (45.5 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 26/93 (27%), Positives = 49/93 (52%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS--- 78
             +V GL    + +   + F Q+G + +  ++ D  + + +GFGF+TF S +  ++ L    
Sbjct:   113 FVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTF 172

Query:    79 -EMNGKTLDGRVIVVDYAKPKTSFRSGMPIARG 110
              E+NGK ++ +  V     P ++ RS  P+A G
Sbjct:   173 HELNGKLVEVKRAVPKEISPVSNIRS--PLASG 203

 Score = 36 (17.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query:   110 GPPESIADRVKVNFFDE 126
             G P SI +    N+FD+
Sbjct:   116 GLPSSITEEEFKNYFDQ 132


>UNIPROTKB|D4AC14 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
            Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
        Length = 631

 Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FSQ+G+ +   ++ D  S KSKGFGFV++  HE+A KA+ EMN
Sbjct:   194 YIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G+ I V  A+ K
Sbjct:   253 GKEMSGKSIFVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L   FS +G +  A ++++    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGSKPLYVALAQRK 371

 Score = 125 (49.1 bits), Expect = 5.8e-07, P = 5.8e-07
 Identities = 27/77 (35%), Positives = 41/77 (53%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+ FV F + E A KA+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L    +   L + FS  G V+   +  D ++ +S G+ +V F    +AE+AL  MN
Sbjct:    14 YVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query:    82 GKTLDGRVIVVDYAKPKTSFR-SGM 105
                + G+ I + +++   S R SG+
Sbjct:    74 FDVIKGKPIRIMWSQRDPSLRKSGV 98


>UNIPROTKB|G3V9N0 [details] [associations]
            symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
            OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
        Length = 660

 Score = 159 (61.0 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FSQ+G+ +   ++ D  S KSKGFGFV++  HE+A KA+ EMN
Sbjct:   194 YIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G+ I V  A+ K
Sbjct:   253 GKEMSGKSIFVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.5e-08, P = 8.5e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L   FS +G +  A ++++    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGSKPLYVALAQRK 371

 Score = 125 (49.1 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 27/77 (35%), Positives = 41/77 (53%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+ FV F + E A KA+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 100 (40.3 bits), Expect = 0.00029, P = 0.00029
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L    +   L + FS  G V+   +  D ++ +S G+ +V F    +AE+AL  MN
Sbjct:    14 YVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query:    82 GKTLDGRVIVVDYAKPKTSFR-SGM 105
                + G+ I + +++   S R SG+
Sbjct:    74 FDVIKGKPIRIMWSQRDPSLRKSGV 98


>UNIPROTKB|H3BPI5 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
            Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
        Length = 255

 Score = 150 (57.9 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L    +NK L D  S +G ++  N+V D   + SKG+GFV F +HE AE+A+ +MN
Sbjct:   102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+GR + V   K +
Sbjct:   160 GMLLNGRKVFVGQFKSR 176

 Score = 138 (53.6 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 27/65 (41%), Positives = 39/65 (60%)

Query:    19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS 78
             P  Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ 
Sbjct:   191 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249

Query:    79 EMNGK 83
             EMNGK
Sbjct:   250 EMNGK 254


>UNIPROTKB|E7EQV3 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
            ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
            ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
        Length = 591

 Score = 158 (60.7 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   149 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 207

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   208 GKELNGKQIYVGRAQKK 224

 Score = 133 (51.9 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:    57 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 114

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   115 GMLLNDRKVFVGRFKSR 131

 Score = 132 (51.5 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   252 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 309

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   310 GRIVATKPLYVALAQRK 326


>UNIPROTKB|E2RQC8 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
            ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
            NextBio:20898275 Uniprot:E2RQC8
        Length = 596

 Score = 158 (60.7 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   253 GKELNGKQIYVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 7.4e-08, P = 7.4e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176


>UNIPROTKB|H3BR27 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
            ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
            Ensembl:ENST00000568578 Uniprot:H3BR27
        Length = 78

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 29/66 (43%), Positives = 45/66 (68%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GK-TLD 86
             GK T+D
Sbjct:    71 GKMTVD 76


>UNIPROTKB|K7GKR9 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
        Length = 196

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 28/64 (43%), Positives = 43/64 (67%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    11 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 70

Query:    82 GKTL 85
             GK L
Sbjct:    71 GKLL 74


>POMBASE|SPBC4F6.14 [details] [associations]
            symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
            "rRNA processing" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
            HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
            PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
            STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
            KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
        Length = 674

 Score = 146 (56.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 27/77 (35%), Positives = 49/77 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L+F T    L++ FS  G +  A +V +  + +++G+GFVTF+  E+A++A  E+ 
Sbjct:     8 FVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELK 67

Query:    82 GKTLDGRVIVVDYAKPK 98
              K L GR++ +D+A P+
Sbjct:    68 NKKLHGRILRLDFATPR 84

 Score = 109 (43.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 25/69 (36%), Positives = 39/69 (56%)

Query:    35 LSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94
             L   FS++G+V E  I   +   +  GF FV     + AE+A++ +NG  +DGR I VD+
Sbjct:   124 LEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182

Query:    95 AKPKTSFRS 103
             A  K +F +
Sbjct:   183 AVSKDAFEA 191

 Score = 36 (17.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query:    97 PKTSFRSGMPIARGPPESIADRVKVNFFDEEPKTQK 132
             PK     G    RG  + ++  ++ N  +EE    K
Sbjct:   475 PKILAMLGRQAIRGFMDDVSKGLRANITEEEENLDK 510


>UNIPROTKB|E7ERJ7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
            ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
            Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
            Bgee:E7ERJ7 Uniprot:E7ERJ7
        Length = 604

 Score = 158 (60.7 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   162 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 220

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   221 GKELNGKQIYVGRAQKK 237

 Score = 132 (51.5 bits), Expect = 9.7e-08, P = 9.7e-08
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   265 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 322

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   323 GRIVATKPLYVALAQRK 339


>UNIPROTKB|E1C903 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
            EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
            UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
            Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
            NextBio:20822696 Uniprot:E1C903
        Length = 630

 Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + FS+YG+ +   ++ D    KSKGFGFV+F  HE+A KA+ EMN
Sbjct:   194 YIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTG-KSKGFGFVSFEKHEDANKAVEEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK ++G+++ V  A+ K
Sbjct:   253 GKDINGKMVFVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L   FS +G +  A ++++    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGSKPLYVALAQRK 371

 Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 25/77 (32%), Positives = 42/77 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+ FV F + + A++A+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 98 (39.6 bits), Expect = 0.00045, P = 0.00045
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L    +   L + FS  G V+   +  D ++ +S G+ +V F    +AE+AL  MN
Sbjct:    14 YVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query:    82 GKTLDGRVIVVDYAKPKTSFR-SGM 105
                + G+ I + +++   S R SG+
Sbjct:    74 FDVIKGKPIRIMWSQRDPSLRKSGV 98


>UNIPROTKB|P61286 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9913 "Bos taurus" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
            GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
            UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
            Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
        Length = 636

 Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   253 GKELNGKQIYVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVATKPLYVALAQRK 371


>UNIPROTKB|J9P326 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
            ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
            KEGG:cfa:612751 Uniprot:J9P326
        Length = 636

 Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   253 GKELNGKQIYVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVATKPLYVALAQRK 371


>UNIPROTKB|P11940 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
            [GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
            evidence=TAS] [GO:0008494 "translation activator activity"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
            regulation of nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=TAS] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
            evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0044267 "cellular protein metabolic
            process" evidence=TAS] [GO:0045727 "positive regulation of
            translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
            GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
            eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
            Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
            PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
            PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
            CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
            EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
            EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
            EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
            IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
            RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
            PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
            PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
            PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
            PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
            SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
            STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
            PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
            KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
            HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
            PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
            BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
            EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
            PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
            Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
        Length = 636

 Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   253 GKELNGKQIYVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVATKPLYVALAQRK 371


>UNIPROTKB|F2Z557 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
            ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
            Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
            Uniprot:F2Z557
        Length = 636

 Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   253 GKELNGKQIYVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVATKPLYVALAQRK 371


>UNIPROTKB|Q5R8F7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
            RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
            SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
            InParanoid:Q5R8F7 Uniprot:Q5R8F7
        Length = 636

 Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   253 GKELNGKQIYVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVATKPLYVALAQRK 371


>FB|FBgn0260943 [details] [associations]
            symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
            GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
            RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
            UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
            DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
            EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
            UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
            OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
            Uniprot:Q9VVE5
        Length = 369

 Score = 154 (59.3 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 38/111 (34%), Positives = 63/111 (56%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS--- 78
             ++ GLS+ TS + L D F +YG + EA ++ D  + +S+GFGFVTF+     +K L+   
Sbjct:    32 FIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGT 91

Query:    79 -EMNGKTLDGRVIVVDYAKPKTSFRSGMPIARG--PPESIADRVKVNFFDE 126
              E++GK +D +V     A PK   R+      G   P ++ D VK ++F++
Sbjct:    92 HELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLED-VK-SYFEQ 140

 Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 23/77 (29%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T+ + +   F Q+G + +A ++ D+ +++ +GFGFVTF S +  +K + E++
Sbjct:   121 FVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK-VCEIH 179

Query:    82 GKTLDGRVIVVDYAKPK 98
                ++ +++    A+PK
Sbjct:   180 FHEINNKMVECKKAQPK 196


>UNIPROTKB|I3LS00 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
            mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
            Uniprot:I3LS00
        Length = 647

 Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L D F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   253 GKELNGKQIYVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVATKPLYVALAQRK 371


>UNIPROTKB|D6RAF8 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
            HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
            IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
            Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
            Uniprot:D6RAF8
        Length = 221

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/75 (38%), Positives = 48/75 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+ T+ K L D FS++G+VV+  + +D ++ +S+GFGFV F   E  +K + +  
Sbjct:   100 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 159

Query:    82 GKTLDGRVIVVDYAK 96
              K L+G+VI    AK
Sbjct:   160 HK-LNGKVIDPKRAK 173


>UNIPROTKB|D6RBQ9 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
            InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
            ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
            ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
        Length = 155

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/75 (38%), Positives = 48/75 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+ T+ K L D FS++G+VV+  + +D ++ +S+GFGFV F   E  +K + +  
Sbjct:    81 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 140

Query:    82 GKTLDGRVIVVDYAK 96
              K L+G+VI    AK
Sbjct:   141 HK-LNGKVIDPKRAK 154


>UNIPROTKB|D6RF44 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
            HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
            ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
            ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
        Length = 112

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/75 (38%), Positives = 48/75 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+ T+ K L D FS++G+VV+  + +D ++ +S+GFGFV F   E  +K + +  
Sbjct:     2 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 61

Query:    82 GKTLDGRVIVVDYAK 96
              K L+G+VI    AK
Sbjct:    62 HK-LNGKVIDPKRAK 75


>UNIPROTKB|H0YA96 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
        Length = 210

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/75 (38%), Positives = 48/75 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+ T+ K L D FS++G+VV+  + +D ++ +S+GFGFV F   E  +K + +  
Sbjct:     4 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 63

Query:    82 GKTLDGRVIVVDYAK 96
              K L+G+VI    AK
Sbjct:    64 HK-LNGKVIDPKRAK 77


>UNIPROTKB|Q6DES0 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
            export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] [GO:0046833 "positive regulation of RNA export from
            nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
            HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
            EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
            ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
            GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
            InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
        Length = 153

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 33/95 (34%), Positives = 53/95 (55%)

Query:    16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEK 75
             H C L YV  LSFYT+ + + + FS+ G V +  + +D++   + GF FV + +  +AE+
Sbjct:    35 HSCTL-YVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQ 93

Query:    76 ALSEMNGKTLDGRVIVVDYAKPKTSFRSGMPIARG 110
             A+  +NG  LD R+I  D+      F+ G    RG
Sbjct:    94 AMRFINGTRLDDRIIRTDW---DAGFKEGRQYGRG 125


>RGD|1563142 [details] [associations]
            symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
            GeneTree:ENSGT00640000091232 IPI:IPI00778604
            ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
            UCSC:RGD:1563142 Uniprot:D3ZAS7
        Length = 607

 Score = 157 (60.3 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 30/77 (38%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L      +GL D FSQ+G+     ++ D  + +S+GFGF+ F  HEEA+KA+  MN
Sbjct:   194 YVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + G+++ V  A+ +
Sbjct:   253 GKEVSGQLLYVGRAQKR 269

 Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 28/77 (36%), Positives = 45/77 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++ + +V +     S+GFGFV F +HE A+KA++ MN
Sbjct:   102 FIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V + K +
Sbjct:   160 GMLLNDRKVFVGHFKSR 176

 Score = 137 (53.3 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L    ++  L + FS YG +  A ++ +  S  SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDSINDDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGTKPLYVALAQRK 371

 Score = 100 (40.3 bits), Expect = 0.00026, P = 0.00026
 Identities = 27/95 (28%), Positives = 45/95 (47%)

Query:    14 RNHFCPLC--YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHE 71
             R H C L   YV  L    +   L + FS  G ++   +  D  + +S G+ ++ F    
Sbjct:     4 RGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPA 63

Query:    72 EAEKALSEMNGKTLDGRVIVVDYAKPKTSFR-SGM 105
             +AE+AL  MN + + G+ I + ++      R SGM
Sbjct:    64 DAERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGM 98


>TAIR|locus:2086325 [details] [associations]
            symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
            [GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
            biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
            evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
            GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
            HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
            EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
            UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
            PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
            EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
            TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
            PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
            Genevestigator:Q9LKA4 Uniprot:Q9LKA4
        Length = 404

 Score = 154 (59.3 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 33/74 (44%), Positives = 48/74 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ +GL   FS YG + EA +++D+V+ KSKG+GFVTF   + A  AL E +
Sbjct:    78 FIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPS 137

Query:    82 GKTLDGRVIVVDYA 95
              K +DGRV V   A
Sbjct:   138 -KKIDGRVTVTQLA 150

 Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
 Identities = 29/89 (32%), Positives = 45/89 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YVA + F      L + F  YG V E  +  D+V+ KS+GF    + + E A+ AL++  
Sbjct:   170 YVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPV 229

Query:    82 GKTLDGRVIVVDYAKP-KTSFRSGMPIAR 109
              K +DG+ +    A   K   + GMP A+
Sbjct:   230 -KVIDGKHLNCKLAVDGKKGGKPGMPQAQ 257


>MGI|MGI:1330294 [details] [associations]
            symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
            replication origin binding" evidence=ISO] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=ISO] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
            GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
            InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
            ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
            IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
            ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
            MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
            PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
            NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
            GermOnline:ENSMUSG00000020358 Uniprot:Q99020
        Length = 285

 Score = 150 (57.9 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ TS K L D F+++G+VV+  I MD  + +S+GFGF+ F      EK L +  
Sbjct:    78 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKE 137

Query:    82 GKTLDGRVI 90
              + LDGRVI
Sbjct:   138 HR-LDGRVI 145

 Score = 97 (39.2 bits), Expect = 0.00018, P = 0.00018
 Identities = 21/81 (25%), Positives = 42/81 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+   + + + + F Q+G++    + +D   +K +GF F+TF   +  +K L E  
Sbjct:   162 FVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL-EKK 220

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
               T+ G    +  A+PK  ++
Sbjct:   221 FHTVSGSKCEIKVAQPKEVYQ 241


>UNIPROTKB|Q9QX80 [details] [associations]
            symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
            InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
            EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
            PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
            RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
            STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
            GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
            Genevestigator:Q9QX80 Uniprot:Q9QX80
        Length = 285

 Score = 150 (57.9 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ TS K L D F+++G+VV+  I MD  + +S+GFGF+ F      EK L +  
Sbjct:    78 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKE 137

Query:    82 GKTLDGRVI 90
              + LDGRVI
Sbjct:   138 HR-LDGRVI 145

 Score = 97 (39.2 bits), Expect = 0.00018, P = 0.00018
 Identities = 21/81 (25%), Positives = 42/81 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+   + + + + F Q+G++    + +D   +K +GF F+TF   +  +K L E  
Sbjct:   162 FVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL-EKK 220

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
               T+ G    +  A+PK  ++
Sbjct:   221 FHTVSGSKCEIKVAQPKEVYQ 241


>TAIR|locus:2157702 [details] [associations]
            symbol:CP31B "chloroplast RNA-binding protein 31B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
            evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
            "response to cold" evidence=RCA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
            eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
            ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
            EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
            ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
            PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
            KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
            PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
        Length = 289

 Score = 150 (57.9 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L +   +  L   FS++G+VV+A +V DR + +S+GFGFV  ++  E   A++ ++
Sbjct:   210 YVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALD 269

Query:    82 GKTLDGRVIVVDYAKPKT 99
             G+ L+GR I V+ A+ +T
Sbjct:   270 GQNLEGRAIKVNVAEERT 287

 Score = 142 (55.0 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 29/79 (36%), Positives = 50/79 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L +   ++ L+  F Q G V  + ++ +R +D+S+GFGFVT ++ EEAEKA+ + N
Sbjct:   116 FVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFN 175

Query:    82 GKTLDGRVIVVDYAKPKTS 100
                ++GR + V+ A P+ S
Sbjct:   176 SFEVNGRRLTVNRAAPRGS 194


>UNIPROTKB|Q5JQF3 [details] [associations]
            symbol:PABPC5 "Polyadenylate-binding protein 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
            IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
            HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
        Length = 218

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 28/77 (36%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  +     ++ L + F +YG      ++ D  S KSKGFGFV + +HE A+KA+ +++
Sbjct:    38 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLH 96

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK++DG+V+ V  A+ K
Sbjct:    97 GKSIDGKVLYVGRAQKK 113

 Score = 119 (46.9 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L    +++ L + FS +G +  A ++M+    + KGFG V F+S EEA KA+ EMN
Sbjct:   141 YIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMN 198

Query:    82 GKTLDGRVIVV 92
             G+ +  + + V
Sbjct:   199 GRIVGSKPLHV 209


>UNIPROTKB|K7GMF5 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
        Length = 80

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 27/64 (42%), Positives = 43/64 (67%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GL+  T+ K L   F +YG++VE  ++ DR ++KS+GF FVTF S  +A+ A  +MN
Sbjct:    13 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 72

Query:    82 GKTL 85
             GK +
Sbjct:    73 GKMM 76


>WB|WBGene00007396 [details] [associations]
            symbol:tiar-3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
            "calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
            RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
            EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
            UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
        Length = 450

 Score = 154 (59.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 31/79 (39%), Positives = 50/79 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  LS   SN+ L   F+++G+V EA ++ D  + KSKG+GFV+F + + AE A++ MN
Sbjct:   228 FVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMN 287

Query:    82 GKTLDGRVIVVDYAKPKTS 100
             GK +  R +  ++A  K S
Sbjct:   288 GKWIGKRAVRTNWAARKNS 306

 Score = 105 (42.0 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 25/69 (36%), Positives = 36/69 (52%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  +S  T++  L D FS YG + E  I       K++ + FV +   E A KA+ EMN
Sbjct:   330 YVGNISQQTTDADLRDLFSTYGDIAEVRIF------KTQRYAFVRYEKKECATKAIMEMN 383

Query:    82 GKTLDGRVI 90
             GK + G  +
Sbjct:   384 GKEMAGNQV 392


>TAIR|locus:2133862 [details] [associations]
            symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
            metabolic process" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
            RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
            ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
            EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
            TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
            ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
        Length = 455

 Score = 140 (54.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 27/77 (35%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ G+S+ T  + L + F +YG +VEA I+ DR + +++GFGF+ FA    AE+ +  M+
Sbjct:    18 FIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI--MD 75

Query:    82 GKTLDGRVIVVDYAKPK 98
                +DGR +    A P+
Sbjct:    76 KHIIDGRTVEAKKAVPR 92

 Score = 105 (42.0 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL    +     + F Q+G + +  ++ D  + + +GFGF+TF S E  +  L +  
Sbjct:   125 FVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTF 184

Query:    82 GKTLDGRVIVVDYAKPK 98
              + L+G+++ V  A PK
Sbjct:   185 HE-LNGKMVEVKRAVPK 200

 Score = 35 (17.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query:   110 GPPESIADRVKVNFFDE 126
             G P SI +    N+FD+
Sbjct:   128 GLPSSITEAEFKNYFDQ 144


>RGD|69255 [details] [associations]
            symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
           species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
           mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
           evidence=IDA] [GO:0003688 "DNA replication origin binding"
           evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
           "cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
           evidence=ISO] [GO:0045892 "negative regulation of transcription,
           DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
           transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
           evidence=ISO] [GO:0003700 "sequence-specific DNA binding
           transcription factor activity" evidence=ISO] [GO:0043565
           "sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
           InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
           RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
           GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
           Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
           UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
           ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
           STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
           Uniprot:Q9Z0U8
        Length = 298

 Score = 150 (57.9 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ TS K L D F+++G+VV+  I MD  + +S+GFGF+ F      EK L +  
Sbjct:    91 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKE 150

Query:    82 GKTLDGRVI 90
              + LDGRVI
Sbjct:   151 HR-LDGRVI 158

 Score = 97 (39.2 bits), Expect = 0.00019, P = 0.00019
 Identities = 21/81 (25%), Positives = 42/81 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+   + + + + F Q+G++    + +D   +K +GF F+TF   +  +K L E  
Sbjct:   175 FVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL-EKK 233

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
               T+ G    +  A+PK  ++
Sbjct:   234 FHTVSGSKCEIKVAQPKEVYQ 254


>ZFIN|ZDB-GENE-050308-1 [details] [associations]
            symbol:pabpc1b "poly A binding protein, cytoplasmic 1
            b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
            EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
            UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
            Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
            InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
        Length = 634

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query:    35 LSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94
             L D FS+YG  +   ++ D  + KS+GFGFV+F  HE+A++A+ EMNGK ++G++I V  
Sbjct:   207 LKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGR 265

Query:    95 AKPK 98
             A+ K
Sbjct:   266 AQKK 269

 Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++MD    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVATKPLYVALAQRK 371

 Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
 Identities = 24/85 (28%), Positives = 43/85 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L    +   L + FS  G ++   +  D ++ +S G+ +V F    +AE+AL  MN
Sbjct:    14 YVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query:    82 GKTLDGRVIVVDYAKPKTSFR-SGM 105
                + GR + + +++   S R SG+
Sbjct:    74 FDVIKGRPVRIMWSQRDPSLRKSGV 98


>UNIPROTKB|F1NH82 [details] [associations]
            symbol:F1NH82 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
            EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
            Ensembl:ENSGALT00000023332 Uniprot:F1NH82
        Length = 469

 Score = 154 (59.3 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:    26 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 84

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:    85 GKELNGKQIYVGRAQKK 101

 Score = 132 (51.5 bits), Expect = 6.6e-08, P = 6.6e-08
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   129 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 186

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   187 GRIVATKPLYVALAQRK 203


>UNIPROTKB|F1PA19 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
            Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
        Length = 264

 Score = 148 (57.2 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ TS K L D F+++G+VV+  I MD  + +S+GFGF+ F      EK L +  
Sbjct:     3 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 62

Query:    82 GKTLDGRVI 90
              + LDGRVI
Sbjct:    63 HR-LDGRVI 70


>TAIR|locus:2023903 [details] [associations]
            symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
            RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
            STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
            GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
            OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
            Genevestigator:Q0WRA3 Uniprot:Q0WRA3
        Length = 177

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV GL+   +   L  AF  +G + +    +D+ + K + FGFVTF   E+A  A+  M+
Sbjct:    16 YVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMD 75

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L GRV+ V+YA P+
Sbjct:    76 GAELYGRVLTVNYALPE 92


>UNIPROTKB|Q5ZIH1 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
            OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
            EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
            STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
            KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
        Length = 257

 Score = 147 (56.8 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 29/75 (38%), Positives = 48/75 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+ T+ K L D FS++G+VV+  + +D ++ +S+GFGFV F   E  +K + +  
Sbjct:     2 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 61

Query:    82 GKTLDGRVIVVDYAK 96
              K L+G+VI    AK
Sbjct:    62 HK-LNGKVIDPKRAK 75


>UNIPROTKB|F1NCW4 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
            IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
            Uniprot:F1NCW4
        Length = 258

 Score = 147 (56.8 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 29/75 (38%), Positives = 48/75 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+ T+ K L D FS++G+VV+  + +D ++ +S+GFGFV F   E  +K + +  
Sbjct:     3 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 62

Query:    82 GKTLDGRVIVVDYAK 96
              K L+G+VI    AK
Sbjct:    63 HK-LNGKVIDPKRAK 76


>UNIPROTKB|O43347 [details] [associations]
            symbol:MSI1 "RNA-binding protein Musashi homolog 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
            "poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
            hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
            differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=TAS] [GO:0007399 "nervous system development"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
            EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
            UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
            IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
            PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
            GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
            GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
            neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
            OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
            Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
            GermOnline:ENSG00000135097 Uniprot:O43347
        Length = 362

 Score = 151 (58.2 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query:    18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKAL 77
             C + ++ GLS+ T+ +GL + F Q+G+V E  ++ D ++ +S+GFGFVTF      +K L
Sbjct:    20 CKM-FIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 78

Query:    78 S----EMNGKTLDGRVIVVDYAKPKTSFRS 103
             +    E++ KT+D +V     A+PK   R+
Sbjct:    79 AQSRHELDSKTIDPKVAFPRRAQPKMVTRT 108

 Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/89 (32%), Positives = 53/89 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T+ + +   F Q+G+V +A ++ D+ +++ +GFGFVTF S +  EK + E++
Sbjct:   112 FVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIH 170

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARG 110
                ++ +++    A+PK    S    ARG
Sbjct:   171 FHEINNKMVECKKAQPK-EVMSPTGSARG 198


>MGI|MGI:107376 [details] [associations]
            symbol:Msi1 "musashi RNA-binding protein 1" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
            "response to hormone stimulus" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
            GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
            EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
            RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
            PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
            ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
            PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
            Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
            UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
            EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
            Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
        Length = 362

 Score = 151 (58.2 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query:    18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKAL 77
             C + ++ GLS+ T+ +GL + F Q+G+V E  ++ D ++ +S+GFGFVTF      +K L
Sbjct:    20 CKM-FIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 78

Query:    78 S----EMNGKTLDGRVIVVDYAKPKTSFRS 103
             +    E++ KT+D +V     A+PK   R+
Sbjct:    79 AQSRHELDSKTIDPKVAFPRRAQPKMVTRT 108

 Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 29/89 (32%), Positives = 53/89 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T+ + +   F Q+G+V +A ++ D+ +++ +GFGFVTF S +  EK + E++
Sbjct:   112 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIH 170

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARG 110
                ++ +++    A+PK    S    ARG
Sbjct:   171 FHEINNKMVECKKAQPK-EVMSPTGSARG 198


>RGD|628778 [details] [associations]
            symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
            evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
            evidence=IMP] [GO:0030855 "epithelial cell differentiation"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
            RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
            SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
            KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
            Genevestigator:Q8K3P4 Uniprot:Q8K3P4
        Length = 362

 Score = 151 (58.2 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query:    18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKAL 77
             C + ++ GLS+ T+ +GL + F Q+G+V E  ++ D ++ +S+GFGFVTF      +K L
Sbjct:    20 CKM-FIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 78

Query:    78 S----EMNGKTLDGRVIVVDYAKPKTSFRS 103
             +    E++ KT+D +V     A+PK   R+
Sbjct:    79 AQSRHELDSKTIDPKVAFPRRAQPKMVTRT 108

 Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 29/89 (32%), Positives = 53/89 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T+ + +   F Q+G+V +A ++ D+ +++ +GFGFVTF S +  EK + E++
Sbjct:   112 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIH 170

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARG 110
                ++ +++    A+PK    S    ARG
Sbjct:   171 FHEINNKMVECKKAQPK-EVMSPTGSARG 198


>UNIPROTKB|Q8K3P4 [details] [associations]
            symbol:Msi1 "RNA-binding protein Musashi homolog 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
            RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
            SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
            KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
            Genevestigator:Q8K3P4 Uniprot:Q8K3P4
        Length = 362

 Score = 151 (58.2 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query:    18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKAL 77
             C + ++ GLS+ T+ +GL + F Q+G+V E  ++ D ++ +S+GFGFVTF      +K L
Sbjct:    20 CKM-FIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 78

Query:    78 S----EMNGKTLDGRVIVVDYAKPKTSFRS 103
             +    E++ KT+D +V     A+PK   R+
Sbjct:    79 AQSRHELDSKTIDPKVAFPRRAQPKMVTRT 108

 Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 29/89 (32%), Positives = 53/89 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T+ + +   F Q+G+V +A ++ D+ +++ +GFGFVTF S +  EK + E++
Sbjct:   112 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIH 170

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARG 110
                ++ +++    A+PK    S    ARG
Sbjct:   171 FHEINNKMVECKKAQPK-EVMSPTGSARG 198


>UNIPROTKB|E2RK48 [details] [associations]
            symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
            GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
            RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
            KEGG:cfa:611488 Uniprot:E2RK48
        Length = 362

 Score = 151 (58.2 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query:    18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKAL 77
             C + ++ GLS+ T+ +GL + F Q+G+V E  ++ D ++ +S+GFGFVTF      +K L
Sbjct:    20 CKM-FIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 78

Query:    78 S----EMNGKTLDGRVIVVDYAKPKTSFRS 103
             +    E++ KT+D +V     A+PK   R+
Sbjct:    79 AQSRHELDSKTIDPKVAFPRRAQPKMVTRT 108

 Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T+ + +   F Q+ +V +A ++ D+ +++ +GFGFVTF S +  EK + E++
Sbjct:   112 FVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIH 170

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARG 110
                ++ +++    A+PK    S    ARG
Sbjct:   171 FHEINNKMVECKKAQPK-EVMSPTGSARG 198


>UNIPROTKB|H0Y8G5 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
        Length = 261

 Score = 147 (56.8 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 29/75 (38%), Positives = 48/75 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+ T+ K L D FS++G+VV+  + +D ++ +S+GFGFV F   E  +K + +  
Sbjct:    33 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 92

Query:    82 GKTLDGRVIVVDYAK 96
              K L+G+VI    AK
Sbjct:    93 HK-LNGKVIDPKRAK 106


>UNIPROTKB|E9PTS0 [details] [associations]
            symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
            Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
        Length = 331

 Score = 150 (57.9 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ TS K L D F+++G+VV+  I MD  + +S+GFGF+ F      EK L +  
Sbjct:    77 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKE 136

Query:    82 GKTLDGRVI 90
              + LDGRVI
Sbjct:   137 HR-LDGRVI 144

 Score = 97 (39.2 bits), Expect = 0.00023, P = 0.00023
 Identities = 21/81 (25%), Positives = 42/81 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+   + + + + F Q+G++    + +D   +K +GF F+TF   +  +K L E  
Sbjct:   161 FVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL-EKK 219

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
               T+ G    +  A+PK  ++
Sbjct:   220 FHTVSGSKCEIKVAQPKEVYQ 240


>ZFIN|ZDB-GENE-030131-618 [details] [associations]
            symbol:hnrnpa0l "heterogeneous nuclear
            ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
            EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
            SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
            InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
        Length = 302

 Score = 149 (57.5 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 39/125 (31%), Positives = 67/125 (53%)

Query:    15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAE 74
             N  C L +V GL+  T+++GL   F QYGQ+ +  +VM++   +S+ FGFVT++S EEA+
Sbjct:     3 NQLCKL-FVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEAD 61

Query:    75 KALSE----MNGKTLDGRVIVV--DYAKPKTSFRSGMPIARGPPESIADRVKVNFFDEEP 128
              A+S     ++G  +D +  V   D  KP+   +       G  + I D    ++F +  
Sbjct:    62 AAMSARPHIVDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFG 121

Query:   129 KTQKS 133
               +K+
Sbjct:   122 PIEKA 126

 Score = 119 (46.9 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 27/82 (32%), Positives = 46/82 (56%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL     ++ L D FSQ+G + +A ++ D+ + K +GFGFV F  ++ A+KA+  M 
Sbjct:   100 FVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVV-MK 158

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
               ++ G  + V  A  K   +S
Sbjct:   159 FHSICGHKVEVKKALTKQEMQS 180


>UNIPROTKB|Q9QX81 [details] [associations]
            symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
            EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
            PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
            GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
            RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
            Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
            Uniprot:Q9QX81
        Length = 332

 Score = 150 (57.9 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ TS K L D F+++G+VV+  I MD  + +S+GFGF+ F      EK L +  
Sbjct:    78 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKE 137

Query:    82 GKTLDGRVI 90
              + LDGRVI
Sbjct:   138 HR-LDGRVI 145

 Score = 97 (39.2 bits), Expect = 0.00023, P = 0.00023
 Identities = 21/81 (25%), Positives = 42/81 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+   + + + + F Q+G++    + +D   +K +GF F+TF   +  +K L E  
Sbjct:   162 FVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL-EKK 220

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
               T+ G    +  A+PK  ++
Sbjct:   221 FHTVSGSKCEIKVAQPKEVYQ 241


>UNIPROTKB|D6R9P3 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
            ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
            SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
            Uniprot:D6R9P3
        Length = 280

 Score = 148 (57.2 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ TS K L D F+++G+VV+  I MD  + +S+GFGF+ F      EK L +  
Sbjct:    73 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 132

Query:    82 GKTLDGRVI 90
              + LDGRVI
Sbjct:   133 HR-LDGRVI 140

 Score = 101 (40.6 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 22/81 (27%), Positives = 42/81 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+   + + + + F ++G++    + MD   +K +GF F+TF   E  +K L E  
Sbjct:   157 FVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL-EKK 215

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
               T+ G    +  A+PK  ++
Sbjct:   216 FHTVSGSKCEIKVAQPKEVYQ 236


>UNIPROTKB|G4N7J4 [details] [associations]
            symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
            RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
            KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
            EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
            Uniprot:G4N7J4
        Length = 479

 Score = 153 (58.9 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 34/84 (40%), Positives = 51/84 (60%)

Query:    15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAE 74
             NHF    +V  LS   +++ L+ AFS +G V EA ++ D  + +S+G+GFV F    +AE
Sbjct:   174 NHFH--IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAE 231

Query:    75 KALSEMNGKTLDGRVIVVDYAKPK 98
             KALS M+G+ L  R I  ++A  K
Sbjct:   232 KALSSMDGEWLGSRAIRCNWANQK 255

 Score = 124 (48.7 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 28/80 (35%), Positives = 41/80 (51%)

Query:    21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
             CYV  L+ YT+   +   F  +G VVE+    DR      GF F+   SHE A +A+  +
Sbjct:   304 CYVGNLTPYTTANDVVPLFQNFGYVVESRFQADR------GFAFIKMDSHENAAQAICGL 357

Query:    81 NGKTLDGRVIVVDYAKPKTS 100
             NG  ++GR +   + K K S
Sbjct:   358 NGYNVNGRPLKCSWGKDKNS 377


>UNIPROTKB|D6RD18 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
            ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
            SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
            Uniprot:D6RD18
        Length = 283

 Score = 148 (57.2 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ TS K L D F+++G+VV+  I MD  + +S+GFGF+ F      EK L +  
Sbjct:    73 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 132

Query:    82 GKTLDGRVI 90
              + LDGRVI
Sbjct:   133 HR-LDGRVI 140

 Score = 101 (40.6 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 22/81 (27%), Positives = 42/81 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+   + + + + F ++G++    + MD   +K +GF F+TF   E  +K L E  
Sbjct:   157 FVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL-EKK 215

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
               T+ G    +  A+PK  ++
Sbjct:   216 FHTVSGSKCEIKVAQPKEVYQ 236


>UNIPROTKB|Q3ZC44 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
            EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
            RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
            Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
            NextBio:20870841 Uniprot:Q3ZC44
        Length = 285

 Score = 148 (57.2 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ TS K L D F+++G+VV+  I MD  + +S+GFGF+ F      EK L +  
Sbjct:    73 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQKE 132

Query:    82 GKTLDGRVI 90
              + LDGRVI
Sbjct:   133 HR-LDGRVI 140

 Score = 108 (43.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 23/81 (28%), Positives = 43/81 (53%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+   + + + + F ++G++    + MD  S+K +GF F+TF   E  +K L E  
Sbjct:   157 FVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVL-EKK 215

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
               T+ G    +  A+PK  ++
Sbjct:   216 FHTISGSKCEIKVAQPKEVYQ 236


>UNIPROTKB|F1NH81 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
            Uniprot:F1NH81
        Length = 573

 Score = 154 (59.3 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   130 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 188

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   189 GKELNGKQIYVGRAQKK 205

 Score = 133 (51.9 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:    38 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 95

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:    96 GMLLNDRKVFVGRFKSR 112

 Score = 132 (51.5 bits), Expect = 9.0e-08, P = 9.0e-08
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   233 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 290

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   291 GRIVATKPLYVALAQRK 307


>UNIPROTKB|F1MS42 [details] [associations]
            symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
            "polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
            EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
            Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
        Length = 342

 Score = 150 (57.9 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 31/86 (36%), Positives = 53/86 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS--- 78
             ++ GLS+ T+ +GL + F Q+G+V E  ++ D ++ +S+GFGFVTF      +K L+   
Sbjct:     3 FIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 62

Query:    79 -EMNGKTLDGRVIVVDYAKPKTSFRS 103
              E++ KT+D +V     A+PK   R+
Sbjct:    63 HELDSKTIDPKVAFPRRAQPKMVTRT 88

 Score = 127 (49.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 29/89 (32%), Positives = 53/89 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T+ + +   F Q+G+V +A ++ D+ +++ +GFGFVTF S +  EK + E++
Sbjct:    92 FVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIH 150

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARG 110
                ++ +++    A+PK    S    ARG
Sbjct:   151 FHEINNKMVECKKAQPK-EVMSPTGSARG 178


>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
            symbol:tia1l "cytotoxic granule-associated RNA
            binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
            OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
            EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
            SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
            CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
        Length = 342

 Score = 150 (57.9 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 33/86 (38%), Positives = 52/86 (60%)

Query:    15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAE 74
             NHF    +V  LS   S   +  AF+ +G++ +A +V D  + KSKG+GF++F +  +AE
Sbjct:    95 NHFH--VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAE 152

Query:    75 KALSEMNGKTLDGRVIVVDYAKPKTS 100
              A+ +MNG+ L GR I  ++A  K S
Sbjct:   153 SAIQQMNGQWLGGRQIRTNWATRKPS 178

 Score = 106 (42.4 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 24/82 (29%), Positives = 41/82 (50%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y  G++   S++ +   FS +GQ++E  +  +      KG+ FV F SHE A  A+  +N
Sbjct:   209 YCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFDSHEGAAHAIVSVN 262

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             G  ++G  +   + K     RS
Sbjct:   263 GTCIEGHTVKCYWGKETADMRS 284


>ZFIN|ZDB-GENE-070424-97 [details] [associations]
            symbol:hnrnpd "heterogeneous nuclear
            ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
            OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
            IPI:IPI00512852 Ensembl:ENSDART00000101414
            Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
        Length = 314

 Score = 149 (57.5 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 35/106 (33%), Positives = 62/106 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ T+ K L D F+++G+VV+  + +D ++ +S+GFGFV F   E  EK +++  
Sbjct:    57 FVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQKE 116

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARG--PPESIADRVKVNFFD 125
              K L+G+VI    AK   +      I  G   P++  ++++  +FD
Sbjct:   117 HK-LNGKVIDPKKAKAMKTKEPVKKIFVGGLSPDTPEEKIR-EYFD 160


>UNIPROTKB|Q4VXU2 [details] [associations]
            symbol:PABPC1L "Polyadenylate-binding protein 1-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
            HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
            UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
            IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
            PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
            Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
            GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
            PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
            GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
            CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
        Length = 614

 Score = 154 (59.3 bits), Expect = 4.3e-10, P = 4.3e-10
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L      +GL D FSQ+G+++   ++ D  S  S+ FGFV F  HEEA+KA+  MN
Sbjct:   194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK + GR++    A+ +
Sbjct:   253 GKEVSGRLLYAGRAQKR 269

 Score = 134 (52.2 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +  D     S+GFGFV F +HE A++A++ MN
Sbjct:   102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V + K +
Sbjct:   160 GMLLNDRKVFVGHFKSR 176

 Score = 126 (49.4 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 30/77 (38%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     +  L   FS YG +  A ++ +     SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGTKPLYVALAQRK 371


>UNIPROTKB|E1BNB4 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
            EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
            Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
        Length = 618

 Score = 154 (59.3 bits), Expect = 4.3e-10, P = 4.3e-10
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L      + L D FSQ+G+++   ++ D  S  S+GFGFV F  HEEA+KA+  MN
Sbjct:   194 YVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ + GR++ V  A+ +
Sbjct:   253 GREVSGRLLYVGRAQKR 269

 Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 29/77 (37%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D     S+GFGFV F +HE A+ A+S MN
Sbjct:   102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V + K +
Sbjct:   160 GMLLNDRKVFVGHFKSR 176

 Score = 128 (50.1 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS YG +  A ++ +     SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVGTKPLYVALAQRK 371


>MGI|MGI:1349722 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
            EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
            EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
            EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
            PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
            ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
            STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
            PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
            KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
            CleanEx:MM_PABPC1 Genevestigator:P29341
            GermOnline:ENSMUSG00000022283 Uniprot:P29341
        Length = 636

 Score = 154 (59.3 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   253 GKELNGKQIYVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVATKPLYVALAQRK 371


>RGD|619838 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
            RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
            ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
            MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
            Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
            UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
            Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
        Length = 636

 Score = 154 (59.3 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+        ++ L + F ++G  +   ++ D  S KSKGFGFV+F  HE+A+KA+ EMN
Sbjct:   194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252

Query:    82 GKTLDGRVIVVDYAKPK 98
             GK L+G+ I V  A+ K
Sbjct:   253 GKELNGKQIYVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++  L     NK L D FS +G ++   +V D   + SKG+GFV F + E AE+A+ +MN
Sbjct:   102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159

Query:    82 GKTLDGRVIVVDYAKPK 98
             G  L+ R + V   K +
Sbjct:   160 GMLLNDRKVFVGRFKSR 176

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV  L     ++ L   FS +G +  A ++M+    +SKGFGFV F+S EEA KA++EMN
Sbjct:   297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query:    82 GKTLDGRVIVVDYAKPK 98
             G+ +  + + V  A+ K
Sbjct:   355 GRIVATKPLYVALAQRK 371


>WB|WBGene00000889 [details] [associations]
            symbol:cyn-13 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
            "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
            [GO:0006457 "protein folding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] [GO:0006915 "apoptotic
            process" evidence=IGI;IMP] [GO:0006309 "apoptotic DNA
            fragmentation" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR002130
            InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
            Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
            PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
            HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
            GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
            EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
            PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
            SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
            EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
            EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
            InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
        Length = 331

 Score = 149 (57.5 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 36/87 (41%), Positives = 49/87 (56%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV G +   + K L  AF  +G VV  +I MD  S K +GFGFV F   E+A  A+  MN
Sbjct:    14 YVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMN 73

Query:    82 GKTLDGRVIVVDYAKP-KTSFRSGMPI 107
                L G+ I V++A+P K + RS  P+
Sbjct:    74 ESELFGKTIRVNFARPPKATERSQKPV 100


>UNIPROTKB|Q9U2S6 [details] [associations]
            symbol:cyn-13 "Protein CYN-13, isoform a" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR002130
            InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
            Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
            PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
            HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
            GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
            EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
            PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
            SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
            EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
            EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
            InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
        Length = 331

 Score = 149 (57.5 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 36/87 (41%), Positives = 49/87 (56%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV G +   + K L  AF  +G VV  +I MD  S K +GFGFV F   E+A  A+  MN
Sbjct:    14 YVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMN 73

Query:    82 GKTLDGRVIVVDYAKP-KTSFRSGMPI 107
                L G+ I V++A+P K + RS  P+
Sbjct:    74 ESELFGKTIRVNFARPPKATERSQKPV 100


>TAIR|locus:4515103555 [details] [associations]
            symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
            UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
            EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
            TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
            Genevestigator:Q1G378 Uniprot:Q1G378
        Length = 175

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 30/68 (44%), Positives = 42/68 (61%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             YV GL + T N+GL   F Q+G ++  N+V DR + +S+G+GFVTF   E A +A    N
Sbjct:    55 YVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQ--N 112

Query:    82 GK-TLDGR 88
              K  +DGR
Sbjct:   113 PKPVIDGR 120


>WB|WBGene00004701 [details] [associations]
            symbol:rsp-4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
            morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
            "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
            GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
            GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
            RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
            ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
            MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
            EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
            UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
            InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
            Uniprot:Q09511
        Length = 196

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 30/74 (40%), Positives = 43/74 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             +  LS+ T+   L   F +YG + + +I  D+ S +SKGFGFV F    +AE AL   +G
Sbjct:    23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82

Query:    83 KTLDGRVIVVDYAK 96
             K +DGR + V  AK
Sbjct:    83 KLVDGRELRVTLAK 96


>UNIPROTKB|Q09511 [details] [associations]
            symbol:rsp-4 "Probable splicing factor,
            arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
            [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
            GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
            GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
            RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
            ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
            MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
            EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
            UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
            InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
            Uniprot:Q09511
        Length = 196

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 30/74 (40%), Positives = 43/74 (58%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             +  LS+ T+   L   F +YG + + +I  D+ S +SKGFGFV F    +AE AL   +G
Sbjct:    23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82

Query:    83 KTLDGRVIVVDYAK 96
             K +DGR + V  AK
Sbjct:    83 KLVDGRELRVTLAK 96


>ZFIN|ZDB-GENE-030826-25 [details] [associations]
            symbol:msi2a "musashi homolog 2a (Drosophila)"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
            EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
            RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
            Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
            GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
            OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
        Length = 388

 Score = 150 (57.9 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 36/115 (31%), Positives = 63/115 (54%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS--- 78
             ++ GLS+ TS   L D F ++G++ E  ++ D  + +S+GFGF+TFA     +K L+   
Sbjct:    24 FIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQPH 83

Query:    79 -EMNGKTLDGRVIVVDYAKPKTSFRSGMPIARGPPES-IADRVKVNFFDEEPKTQ 131
              E++ KT+D +V     A+PK   R+      G   S + + VK  +F++  K +
Sbjct:    84 HELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSASTVVEDVK-QYFEQFGKVE 137

 Score = 120 (47.3 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 24/77 (31%), Positives = 48/77 (62%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T  + +   F Q+G+V +A ++ D+ +++ +GFGFVTF + +  EK + E++
Sbjct:   113 FVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEK-VCEIH 171

Query:    82 GKTLDGRVIVVDYAKPK 98
                ++ +++    A+PK
Sbjct:   172 FHEINNKMVECKKAQPK 188


>UNIPROTKB|D6RBZ0 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
            ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
            SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
            Uniprot:D6RBZ0
        Length = 327

 Score = 148 (57.2 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ TS K L D F+++G+VV+  I MD  + +S+GFGF+ F      EK L +  
Sbjct:    73 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 132

Query:    82 GKTLDGRVI 90
              + LDGRVI
Sbjct:   133 HR-LDGRVI 140

 Score = 101 (40.6 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 22/81 (27%), Positives = 42/81 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL+   + + + + F ++G++    + MD   +K +GF F+TF   E  +K L E  
Sbjct:   157 FVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL-EKK 215

Query:    82 GKTLDGRVIVVDYAKPKTSFR 102
               T+ G    +  A+PK  ++
Sbjct:   216 FHTVSGSKCEIKVAQPKEVYQ 236


>UNIPROTKB|Q99729 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
            evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
            EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
            EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
            EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
            IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
            PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
            UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
            SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
            PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
            PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
            Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
            KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
            GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
            neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
            OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
            EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
            ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
            Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
        Length = 332

 Score = 148 (57.2 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS+ TS K L D F+++G+VV+  I MD  + +S+GFGF+ F      EK L +  
Sbjct:    72 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 131

Query:    82 GKTLDGRVI 90
              + LDGRVI
Sbjct:   132 HR-LDGRVI 139


>UNIPROTKB|B4DTC3 [details] [associations]
            symbol:HNRNPD "cDNA FLJ54150, highly similar to
            Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
            UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
            Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
            Ensembl:ENST00000543098 Uniprot:B4DTC3
        Length = 303

 Score = 147 (56.8 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 29/75 (38%), Positives = 48/75 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+ T+ K L D FS++G+VV+  + +D ++ +S+GFGFV F   E  +K + +  
Sbjct:    48 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 107

Query:    82 GKTLDGRVIVVDYAK 96
              K L+G+VI    AK
Sbjct:   108 HK-LNGKVIDPKRAK 121


>UNIPROTKB|A5D9H5 [details] [associations]
            symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
            species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
            Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
            RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
            Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
            NextBio:20874604 Uniprot:A5D9H5
        Length = 306

 Score = 147 (56.8 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 29/75 (38%), Positives = 48/75 (64%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             ++ GLS+ T+ K L D FS++G+VV+  + +D ++ +S+GFGFV F   E  +K + +  
Sbjct:   100 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 159

Query:    82 GKTLDGRVIVVDYAK 96
              K L+G+VI    AK
Sbjct:   160 HK-LNGKVIDPKRAK 173


>UNIPROTKB|F1N4Q4 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
            RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
            Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
            NextBio:20869865 Uniprot:F1N4Q4
        Length = 382

 Score = 149 (57.5 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 28/64 (43%), Positives = 44/64 (68%)

Query:    35 LSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94
             L + FS+YG      ++ D  S KSKGFGFV + +HE A+KA+ +++GK++DG+V+ V  
Sbjct:   215 LKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGR 273

Query:    95 AKPK 98
             A+ K
Sbjct:   274 AQKK 277

 Score = 114 (45.2 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             Y+  L     ++ L + FS +G +  A ++++    + KGFG + F+S EEA KA+ EMN
Sbjct:   305 YIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVICFSSFEEATKAVDEMN 362

Query:    82 GKTLDGRVIVV 92
             G+ +  + + V
Sbjct:   363 GRIVGSKPLQV 373


>UNIPROTKB|F1P336 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
            EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
            Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
        Length = 689

 Score = 153 (58.9 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 35/83 (42%), Positives = 50/83 (60%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T+ + L ++F   G +  A IV DR +  SKGFGFV F+S E+A+ A   M 
Sbjct:   554 FVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAME 610

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG 104
                +DG  + +D+AKPK  F+ G
Sbjct:   611 DGEIDGNKVTLDFAKPKGEFQRG 633

 Score = 114 (45.2 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 25/82 (30%), Positives = 42/82 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L +  +   + + F      +E  +V+++    SKG  ++ F +  EAEKAL E  
Sbjct:   372 FVKNLPYRVTEDEMKNVFEN---ALEVRLVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQ 427

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             G  +DGR +V+DY   K+   S
Sbjct:   428 GTEVDGRAMVIDYTGEKSQQES 449

 Score = 97 (39.2 bits), Expect = 0.00065, P = 0.00065
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSD-KSKGFGFVTFASHEEAEKALSEMN 81
             V  LS+  S + L + F +       +I M + +  + KG+ FV F + E+A++AL+  N
Sbjct:   463 VNNLSYAASEETLQELFKK-----ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 517

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARG 110
                ++GR I ++++ P  S++ G   ARG
Sbjct:   518 NTEIEGRAIRLEFSSP--SWQKGNMNARG 544


>UNIPROTKB|F1NU40 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
            "angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
            DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
            GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
            GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
            EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
            ArrayExpress:F1NU40 Uniprot:F1NU40
        Length = 691

 Score = 153 (58.9 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 35/83 (42%), Positives = 50/83 (60%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T+ + L ++F   G +  A IV DR +  SKGFGFV F+S E+A+ A   M 
Sbjct:   556 FVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAME 612

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG 104
                +DG  + +D+AKPK  F+ G
Sbjct:   613 DGEIDGNKVTLDFAKPKGEFQRG 635

 Score = 114 (45.2 bits), Expect = 9.9e-06, P = 9.9e-06
 Identities = 25/82 (30%), Positives = 42/82 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L +  +   + + F      +E  +V+++    SKG  ++ F +  EAEKAL E  
Sbjct:   374 FVKNLPYRVTEDEMKNVFEN---ALEVRLVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQ 429

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             G  +DGR +V+DY   K+   S
Sbjct:   430 GTEVDGRAMVIDYTGEKSQQES 451

 Score = 97 (39.2 bits), Expect = 0.00065, P = 0.00065
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSD-KSKGFGFVTFASHEEAEKALSEMN 81
             V  LS+  S + L + F +       +I M + +  + KG+ FV F + E+A++AL+  N
Sbjct:   465 VNNLSYAASEETLQELFKK-----ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 519

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARG 110
                ++GR I ++++ P  S++ G   ARG
Sbjct:   520 NTEIEGRAIRLEFSSP--SWQKGNMNARG 546


>UNIPROTKB|P15771 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
            IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
            ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
            GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
            InParanoid:P15771 NextBio:20816253 Uniprot:P15771
        Length = 694

 Score = 153 (58.9 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 35/83 (42%), Positives = 50/83 (60%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GLS  T+ + L ++F   G +  A IV DR +  SKGFGFV F+S E+A+ A   M 
Sbjct:   556 FVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAME 612

Query:    82 GKTLDGRVIVVDYAKPKTSFRSG 104
                +DG  + +D+AKPK  F+ G
Sbjct:   613 DGEIDGNKVTLDFAKPKGEFQRG 635

 Score = 114 (45.2 bits), Expect = 9.9e-06, P = 9.9e-06
 Identities = 25/82 (30%), Positives = 42/82 (51%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L +  +   + + F      +E  +V+++    SKG  ++ F +  EAEKAL E  
Sbjct:   374 FVKNLPYRVTEDEMKNVFEN---ALEVRLVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQ 429

Query:    82 GKTLDGRVIVVDYAKPKTSFRS 103
             G  +DGR +V+DY   K+   S
Sbjct:   430 GTEVDGRAMVIDYTGEKSQQES 451

 Score = 97 (39.2 bits), Expect = 0.00065, P = 0.00065
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSD-KSKGFGFVTFASHEEAEKALSEMN 81
             V  LS+  S + L + F +       +I M + +  + KG+ FV F + E+A++AL+  N
Sbjct:   465 VNNLSYAASEETLQELFKK-----ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 519

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMPIARG 110
                ++GR I ++++ P  S++ G   ARG
Sbjct:   520 NTEIEGRAIRLEFSSP--SWQKGNMNARG 546


>DICTYBASE|DDB_G0275027 [details] [associations]
            symbol:DDB_G0275027 "SRA stem-loop-interacting
            RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
            discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
            ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
            ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
            GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
            Uniprot:Q86I71
        Length = 91

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 31/85 (36%), Positives = 50/85 (58%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V  L +    + L + FSQ+G + +  +V+DRV+ +SKGFGFV F S E  + A++  N
Sbjct:     7 FVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAINSDN 66

Query:    82 GKTLDGRVIVVDYAKPKTSFRSGMP 106
                ++GR +VV+ A  K  F+   P
Sbjct:    67 --EINGRKLVVNEALAK-DFKENTP 88


>UNIPROTKB|P30352 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
            EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
            UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
            GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
        Length = 221

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L++ TS   L   F +YG+V +  I  DR + +S+GF FV F    +AE A+  M+G
Sbjct:    18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query:    83 KTLDGRVIVVD---YAKPKTSFRSGMPIARGPP 112
               LDGR + V    Y +P  S  S     RGPP
Sbjct:    78 AVLDGRELRVQMARYGRPPDSHHS----RRGPP 106


>UNIPROTKB|Q3MHR5 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
            IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
            ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
            Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
            InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
            Uniprot:Q3MHR5
        Length = 221

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L++ TS   L   F +YG+V +  I  DR + +S+GF FV F    +AE A+  M+G
Sbjct:    18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query:    83 KTLDGRVIVVD---YAKPKTSFRSGMPIARGPP 112
               LDGR + V    Y +P  S  S     RGPP
Sbjct:    78 AVLDGRELRVQMARYGRPPDSHHS----RRGPP 106


>UNIPROTKB|E2RDB2 [details] [associations]
            symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
            GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
            EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
            ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
            GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
        Length = 221

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L++ TS   L   F +YG+V +  I  DR + +S+GF FV F    +AE A+  M+G
Sbjct:    18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query:    83 KTLDGRVIVVD---YAKPKTSFRSGMPIARGPP 112
               LDGR + V    Y +P  S  S     RGPP
Sbjct:    78 AVLDGRELRVQMARYGRPPDSHHS----RRGPP 106


>UNIPROTKB|B4DN89 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
            ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
            ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
            Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
            Bgee:B4DN89 Uniprot:B4DN89
        Length = 209

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L++ TS   L   F +YG+V +  I  DR + +S+GF FV F    +AE A+  M+G
Sbjct:    18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query:    83 KTLDGRVIVVD---YAKPKTSFRSGMPIARGPP 112
               LDGR + V    Y +P  S  S     RGPP
Sbjct:    78 AVLDGRELRVQMARYGRPPDSHHS----RRGPP 106


>UNIPROTKB|J3KP15 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
            Uniprot:J3KP15
        Length = 134

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L++ TS   L   F +YG+V +  I  DR + +S+GF FV F    +AE A+  M+G
Sbjct:    18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query:    83 KTLDGRVIVVD---YAKPKTSFRSGMPIARGPP 112
               LDGR + V    Y +P  S  S     RGPP
Sbjct:    78 AVLDGRELRVQMARYGRPPDSHHS----RRGPP 106


>UNIPROTKB|J3QL05 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
            Uniprot:J3QL05
        Length = 130

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L++ TS   L   F +YG+V +  I  DR + +S+GF FV F    +AE A+  M+G
Sbjct:    18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query:    83 KTLDGRVIVVD---YAKPKTSFRSGMPIARGPP 112
               LDGR + V    Y +P  S  S     RGPP
Sbjct:    78 AVLDGRELRVQMARYGRPPDSHHS----RRGPP 106


>UNIPROTKB|Q01130 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
            "transcription corepressor activity" evidence=NAS] [GO:0016607
            "nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=TAS] [GO:0006369
            "termination of RNA polymerase II transcription" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
            GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
            HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
            CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
            EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
            EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
            RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
            PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
            ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
            MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
            PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
            Ensembl:ENST00000359995 Ensembl:ENST00000392485
            Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
            KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
            MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
            ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
            NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
            Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
        Length = 221

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L++ TS   L   F +YG+V +  I  DR + +S+GF FV F    +AE A+  M+G
Sbjct:    18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query:    83 KTLDGRVIVVD---YAKPKTSFRSGMPIARGPP 112
               LDGR + V    Y +P  S  S     RGPP
Sbjct:    78 AVLDGRELRVQMARYGRPPDSHHS----RRGPP 106


>UNIPROTKB|Q06A98 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
            RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
            SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
        Length = 221

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L++ TS   L   F +YG+V +  I  DR + +S+GF FV F    +AE A+  M+G
Sbjct:    18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query:    83 KTLDGRVIVVD---YAKPKTSFRSGMPIARGPP 112
               LDGR + V    Y +P  S  S     RGPP
Sbjct:    78 AVLDGRELRVQMARYGRPPDSHHS----RRGPP 106


>MGI|MGI:98284 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
            HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
            OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
            EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
            IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
            UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
            DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
            PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
            Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
            NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
            GermOnline:ENSMUSG00000034120 Uniprot:Q62093
        Length = 221

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L++ TS   L   F +YG+V +  I  DR + +S+GF FV F    +AE A+  M+G
Sbjct:    18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query:    83 KTLDGRVIVVD---YAKPKTSFRSGMPIARGPP 112
               LDGR + V    Y +P  S  S     RGPP
Sbjct:    78 AVLDGRELRVQMARYGRPPDSHHS----RRGPP 106


>RGD|1359422 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
            OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
            RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
            SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L++ TS   L   F +YG+V +  I  DR + +S+GF FV F    +AE A+  M+G
Sbjct:    18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query:    83 KTLDGRVIVVD---YAKPKTSFRSGMPIARGPP 112
               LDGR + V    Y +P  S  S     RGPP
Sbjct:    78 AVLDGRELRVQMARYGRPPDSHHS----RRGPP 106


>UNIPROTKB|Q6PDU1 [details] [associations]
            symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
            EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
            UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
            STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:    23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82
             V  L++ TS   L   F +YG+V +  I  DR + +S+GF FV F    +AE A+  M+G
Sbjct:    18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query:    83 KTLDGRVIVVD---YAKPKTSFRSGMPIARGPP 112
               LDGR + V    Y +P  S  S     RGPP
Sbjct:    78 AVLDGRELRVQMARYGRPPDSHHS----RRGPP 106


>UNIPROTKB|E1BLB7 [details] [associations]
            symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
            OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
            UniGene:Bt.106613 ProteinModelPortal:E1BLB7
            Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
            NextBio:20876057 Uniprot:E1BLB7
        Length = 239

 Score = 143 (55.4 bits), Expect = 7.0e-10, P = 7.0e-10
 Identities = 37/100 (37%), Positives = 57/100 (57%)

Query:    22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
             +V GL ++T++  L   F  +G + EA ++ DR + KS+G+GFVT A    AE+A  + N
Sbjct:    37 FVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 96

Query:    82 GKTLDGRVIVVD--Y--AKPKTSFRSGMPIA--RGPPESI 115
                +DGR   V+  Y  AKP+ S ++G  I   + PP  I
Sbjct:    97 -PNIDGRKANVNLAYLGAKPR-SLQTGFAIGVQQVPPTLI 134

WARNING:  HSPs involving 1308 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      133       133   0.00091  102 3  11 22  0.40    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1558
  No. of states in DFA:  548 (58 KB)
  Total size of DFA:  122 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.57u 0.15s 13.72t   Elapsed:  00:00:01
  Total cpu time:  13.59u 0.15s 13.74t   Elapsed:  00:00:01
  Start:  Fri May 10 04:42:51 2013   End:  Fri May 10 04:42:52 2013
WARNINGS ISSUED:  2

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