BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032812
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 57/80 (71%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
C+V GL + T ++ L +AFS+YG V+++ I+ DR + +S+GFGFVTFAS E +A+ M
Sbjct: 8 CFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAM 67
Query: 81 NGKTLDGRVIVVDYAKPKTS 100
NG+ LDGR I V+ A+ + S
Sbjct: 68 NGQDLDGRNITVNEAQSRRS 87
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 54/76 (71%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
C+V GL++ T+++ L FSQ+G V+++ I+ DR S +S+GFGFVTF + A+ EM
Sbjct: 8 CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 81 NGKTLDGRVIVVDYAK 96
NGK LDGRVI V+ A+
Sbjct: 68 NGKELDGRVITVNEAQ 83
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 55/77 (71%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
C+V GL++ TSN+ L +AF+ YG+++++ ++ DR + +S+GFGFVTF+S A+ M
Sbjct: 10 CFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENM 69
Query: 81 NGKTLDGRVIVVDYAKP 97
NGK LDGR I V+ A+
Sbjct: 70 NGKELDGRNITVNQAQS 86
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 55/77 (71%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
C+V GL++ T+N+ L AF+ +GQV+++ ++ DR + +S+GFGFVTF+S + A+ M
Sbjct: 10 CFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENM 69
Query: 81 NGKTLDGRVIVVDYAKP 97
NGK LDGR I V+ A+
Sbjct: 70 NGKELDGRNITVNQAQS 86
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
C+V GL++ T + L FSQ+G+V+++ I+ DR + +S+GFGFVTF + + A+ EM
Sbjct: 8 CFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEM 67
Query: 81 NGKTLDGRVIVVDYAKP 97
NGK LDGR I V+ A+
Sbjct: 68 NGKELDGRTITVNEAQS 84
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
C+V GL++ T ++ L AFSQYG+V+++ I+ DR + +S+GFGFVTF + + A+ M
Sbjct: 10 CFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGM 69
Query: 81 NGKTLDGRVIVVDYAK 96
NG+ LDGR I V+ A+
Sbjct: 70 NGQDLDGRSITVNEAQ 85
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 53/74 (71%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
+V GL+F T+ + L FS+YGQV E +V DR S +S+GFGFVTF + E+A+ A+ MN
Sbjct: 9 FVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMN 68
Query: 82 GKTLDGRVIVVDYA 95
GK++DGR I VD A
Sbjct: 69 GKSVDGRQIRVDQA 82
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
C+V GL++ T ++ L AF+QYG V+++ I+ DR + +S+GFGFVTF + + A+ M
Sbjct: 10 CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 81 NGKTLDGRVIVVDYAK 96
NG+ LDGR I V+ A+
Sbjct: 70 NGQDLDGRSITVNEAQ 85
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
C+V GL++ T + L AFSQ+G++V++ I+ DR + +S+GFGFVTF + + A+ M
Sbjct: 10 CFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGM 69
Query: 81 NGKTLDGRVIVVDYAK 96
NG+ LDGR I V+ A+
Sbjct: 70 NGQDLDGRSITVNEAQ 85
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 56/83 (67%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V GLSF T+ + L FS+YGQ+ E +V DR + +S+GFGFVTF + ++A+ A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 81 NGKTLDGRVIVVDYAKPKTSFRS 103
NGK++DGR I VD A + RS
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRS 90
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 56/83 (67%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V GLSF T+ + L FS+YGQ+ E +V DR + +S+GFGFVTF + ++A+ A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 81 NGKTLDGRVIVVDYAKPKTSFRS 103
NGK++DGR I VD A + RS
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRS 90
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 56/83 (67%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V GLSF T+ + L FS+YGQ+ E +V DR + +S+GFGFVTF + ++A+ A+ M
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 81 NGKTLDGRVIVVDYAKPKTSFRS 103
NGK++DGR I VD A + RS
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRS 90
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 56/83 (67%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V GLSF T+ + L FS+YGQ+ E +V DR + +S+GFGFVTF + ++A+ A+ M
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 81 NGKTLDGRVIVVDYAKPKTSFRS 103
NGK++DGR I VD A + RS
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRS 90
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 56/83 (67%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V GLSF T+ + L FS+YGQ+ E +V DR + +S+GFGFVTF + ++A+ A+ M
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 81 NGKTLDGRVIVVDYAKPKTSFRS 103
NGK++DGR I VD A + RS
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRS 90
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 55/79 (69%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
+V GLSF T + L FS+YGQ+ E +V DR + +S+GFGFVTF + E+A+ A++ MN
Sbjct: 9 FVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMN 68
Query: 82 GKTLDGRVIVVDYAKPKTS 100
GKT+DGR I VD A ++
Sbjct: 69 GKTVDGRQIRVDQAGKSSN 87
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
C+V GL++ T+++ L AFSQ+G + ++ I+ DR + +S+GFGFVTF + A+ M
Sbjct: 8 CFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGM 67
Query: 81 NGKTLDGRVIVVDYAKP 97
NG+ LDGR I V+ A+
Sbjct: 68 NGQELDGRNITVNEAQS 84
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
+V GLS+ T + L AF+ +G+V EA ++ DR + +S+GFGFV+F+ + A A+ EM+
Sbjct: 38 FVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMD 97
Query: 82 GKTLDGRVIVVDYAKPKTS 100
GK L+GR I V+ A ++S
Sbjct: 98 GKELNGRQIRVNLATERSS 116
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
+V G+S+ T GL +AFS+YG+VV+A I++DR + +S+GF FVTF S EEA A+ +++
Sbjct: 37 FVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLD 95
Query: 82 GKTLDGRVIVVDYA 95
G+ L GR I V+YA
Sbjct: 96 GQDLHGRRIRVNYA 109
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
++ GLS+ T + L DAF+ +G VV+A +++DR + +S+GFGFV F A A+SEM+
Sbjct: 38 FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97
Query: 82 GKTLDGRVIVVDYAKPKTS 100
GK L+GR I V+ A + S
Sbjct: 98 GKELNGRHIRVNPANDRPS 116
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V GL+F T + L D FS +G + E +V DR + +S+GFGF+TF + E A A+ M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 81 NGKTLDGRVIVVDYA 95
NG++LDGR I VD+A
Sbjct: 68 NGESLDGRQIRVDHA 82
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 54/78 (69%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
++ G+++ L +AF++YG+VV+ +++DR + +S+GFGFVTF S E A A+ ++
Sbjct: 43 FIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALD 102
Query: 82 GKTLDGRVIVVDYAKPKT 99
G+ L GRV+ V+YA +T
Sbjct: 103 GRDLHGRVVKVNYANDRT 120
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
++ GL+ T+ K L F +YG+VVE ++ DR ++KS+GF FVTF S +A+ A E+N
Sbjct: 11 FIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARELN 70
Query: 82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGPPESIADR 118
GK LDG+ I V+ A K SF P RGPP S R
Sbjct: 71 GKALDGKPIKVEQAT-KPSF--STPSRRGPPTSPRSR 104
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
++ GL+F T+ + L FS+YGQ+ E +V DR + +S+GFGFVTF + ++A+ A+ M
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 81 NGKTLDGRVIVVDYA 95
NGK +DGR I VD A
Sbjct: 67 NGKAVDGRQIRVDQA 81
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V GL+F T + L D FS +G + E +V DR + +S+GFGF+TF + E A A+ M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 81 NGKTLDGRVIVVDYA 95
NG++LDGR I VD+A
Sbjct: 68 NGESLDGRQIRVDHA 82
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V GL+F T + L D FS +G + E +V DR + +S+GFGF+TF + E A + M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 81 NGKTLDGRVIVVDYA-KPKTSFRSGMPIARGPPESIA 116
NG++LDGR I VD+A K R G A G S +
Sbjct: 68 NGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRSYS 104
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Query: 14 RNHFCPLC--YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHE 71
R F P C YV L + L FS++G+VV A +V DR + +S+GFGFVT +S
Sbjct: 142 RGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSES 201
Query: 72 EAEKALSEMNGKTLDGRVIVVDYA--KPKTSF 101
E A++ ++G+TLDGR + V+ A +P+ +F
Sbjct: 202 EVNDAIAALDGQTLDGRAVRVNVAEERPRRAF 233
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
+V L + ++ L+ F G V A ++ +R +D+S+GFGFVT ++ EEAEKA+ +N
Sbjct: 58 FVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLN 117
Query: 82 GKTLDGRVIVVDYAKPKTS 100
G +DGR + V+ A P+ S
Sbjct: 118 GYDMDGRQLTVNKAAPRGS 136
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
++ GL+ T+ K L F +YG++VE ++ DR ++KS+GF FVTF S +A+ A +M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 81 NGKTLDGRVIVVDYAKPKTSFRSG 104
NGK+LDG+ I V+ A K SF SG
Sbjct: 70 NGKSLDGKAIKVEQAT-KPSFESG 92
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
YV LS+ + L + F++ G+VVEA ++ DR S +SKGFGFVT +S +E +KA++ +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 81 NGKTLDGRVIVVDYAKPK 98
NG LDGR I V A+ +
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 12 ICRNHFCP--LCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFAS 69
+ RN F P +V LSF + L+ F G V ++ D+V+ +S+GFGFVT ++
Sbjct: 90 VERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Query: 70 HEEAEKALSEMNGKTLDGRVIVVDYAKP 97
E E A + NG +GR + V+ P
Sbjct: 150 AAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
++ GL+ T+ K L F +YG++VE ++ DR ++KS+GF FVTF S +A+ A +M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 81 NGKTLDGRVIVVDYAKPKTSFRSG 104
NGK+LDG+ I V+ A K SF SG
Sbjct: 70 NGKSLDGKAIKVEQAT-KPSFESG 92
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
++ GL+F T+ L AF++YG++ E +V DR + +S+GFGFVTF + ++A+ A+ MN
Sbjct: 8 FIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMN 67
Query: 82 GKTLDGRVIVVDYA 95
GK++DGR I VD A
Sbjct: 68 GKSVDGRQIRVDQA 81
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor
GN=GRP1 PE=2 SV=1
Length = 142
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 35 LSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94
L AFS YG+V+E+ I++DR + +S+GFGFVTF++ E A+ MNGK LDGR I V+
Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62
Query: 95 AKP 97
A+
Sbjct: 63 AQS 65
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
++ GL+ T+ K L F +YG++VE ++ DR ++KS+GF FVTF S +A+ A +MN
Sbjct: 11 FIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDMN 70
Query: 82 GKTLDGRVIVVDYAKPKTSF 101
GK+LDG+ I V+ A K SF
Sbjct: 71 GKSLDGKAIKVEQAT-KPSF 89
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
++ GL+ T K L F +YG++ E ++ DR ++KS+GF F+TF S +A+ A+ +MN
Sbjct: 11 FIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMN 70
Query: 82 GKTLDGRVIVVDYAKPKTSFRSGMPIARGP 111
GK+LDG+ I V A K +F SG RGP
Sbjct: 71 GKSLDGKAIKVAQAT-KPAFESGR---RGP 96
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
++ GL+ T+ K L F +YG++VE ++ DR ++KS+GF FVTF S +A+ A +M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 81 NGKTLDGRVIVVDYAKPKTSF 101
NGK+LDG+ I V+ A K SF
Sbjct: 70 NGKSLDGKAIKVEQAT-KPSF 89
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
++ GL+ T+ K L F +YG++VE ++ DR ++KS+GF FVTF S +A+ A +M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 81 NGKTLDGRVIVVDYAKPKTSF 101
NGK+LDG+ I V+ A K SF
Sbjct: 70 NGKSLDGKAIKVEQAT-KPSF 89
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
++ GL+ T+ K L F +YG++VE ++ DR ++KS+GF FVTF S +A+ A +M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 81 NGKTLDGRVIVVDYAKPKTSF 101
NGK+LDG+ I V+ A K SF
Sbjct: 70 NGKSLDGKAIKVEQAT-KPSF 89
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
++ GL+ T+ K L F +YG++VE ++ DR ++KS+GF FVTF S +A+ A +M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 81 NGKTLDGRVIVVDYAKPKTSF 101
NGK+LDG+ I V+ A K SF
Sbjct: 70 NGKSLDGKAIKVEQAT-KPSF 89
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
YV LS+ + L FS+ G+VVEA ++ DR S +SKGFGFVT+ S +E + A+ +
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 81 NGKTLDGRVIVVDYAKPKTSFR 102
+G LDGR I V A+ + R
Sbjct: 266 DGADLDGRQIRVSEAEARPPRR 287
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V L F + L+ F G V ++ D+++ +S+GFGFVT +S E E A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 81 NGKTLDGRVIVVDYAKPKTSFRSGMPIARGP 111
NG LDGR + V+ P G +RGP
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGF--SRGP 181
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
YV + + + L FS++G+VV A +V DR S +S+GFGFVT +S E +A++ +
Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252
Query: 81 NGKTLDGRVIVVDYAKPK 98
+G+TLDGR I V+ A+ +
Sbjct: 253 DGQTLDGRTIRVNAAEER 270
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V L + ++GL+ F Q G V A ++ +R +D+S+GFGFVT ++ EEA+KA+
Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELY 158
Query: 81 NGKTLDGRVIVVDYAKPKTS 100
+ L+GR++ V+ A P+ S
Sbjct: 159 SQYDLNGRLLTVNKAAPRGS 178
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
YV LS+ + L + FS+ G VV+A +V DR S +S+GFGFVT++S +E A+ +
Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268
Query: 81 NGKTLDGRVIVVDYA--KPKTSF 101
NG LDGR I V A +P+ F
Sbjct: 269 NGVDLDGRSIRVSAAEERPRRQF 291
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V L F + L+ F + G V ++ D+++ +S+GFGFVT ++ EE E A +
Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148
Query: 81 NGKTLDGRVIVVD 93
NG +DGR I V+
Sbjct: 149 NGYEIDGRAIRVN 161
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
++ GL+ T K L F +YG++VE ++ DR ++KS+GF FVTF S +A+ A +MN
Sbjct: 11 FIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMN 70
Query: 82 GKTLDGRVIVV 92
GK+LDG+ I V
Sbjct: 71 GKSLDGKAIKV 81
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
YV LS+ + L + FS+ G VV+A +V DR S +S+GFGFVT++S +E A+ +
Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269
Query: 81 NGKTLDGRVIVVDYA--KPKTSF 101
NG LDGR I V A +P+ F
Sbjct: 270 NGIDLDGRSIRVSAAEERPRRQF 292
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V L F + L+ F + G V ++ D++S +S+GFGFVT ++ EE E A +
Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149
Query: 81 NGKTLDGRVIVVD 93
NG +DGR I V+
Sbjct: 150 NGYEIDGRAIRVN 162
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
YV L + N L FS++G+VVEA +V DR + +S+GFGFVT + +E +A+S +
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 81 NGKTLDGRVIVVDYAKPKTSFR 102
+G+ L+GR I V+ A+ + R
Sbjct: 306 DGQNLEGRAIRVNVAEERPPRR 327
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 52/80 (65%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
+V L++ +++ L+ F Q G V A ++ +R +D+S+GFGFVT +S +EAE A+ +
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 81 NGKTLDGRVIVVDYAKPKTS 100
N L+GR++ V+ A P+ S
Sbjct: 212 NRYDLNGRLLTVNKAAPRGS 231
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
++ GL+ T+ K L F +YG++VE ++ DR ++KS+GF FVTF S +A+ +MN
Sbjct: 11 FIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMN 70
Query: 82 GKTLDGRVIVVDYAKPKTSF 101
GK+LDG+ I V+ A K SF
Sbjct: 71 GKSLDGKAIKVEQAT-KPSF 89
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
++ GL+ T+ K L F +YG++VE ++ DR ++KS+GF FVTF S +A+ +M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 81 NGKTLDGRVIVVDYAKPKTSF 101
NGK+LDG+ I V+ A K SF
Sbjct: 70 NGKSLDGKAIKVEQAT-KPSF 89
>sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis
GN=RBMXL2 PE=2 SV=1
Length = 394
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
++ GL+ T K L F +YG++VE ++ DR ++KS+GF FVTF S A+ A +MN
Sbjct: 11 FIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMN 70
Query: 82 GKTLDGRVIVV 92
GK+LDG+ I V
Sbjct: 71 GKSLDGKAIKV 81
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
Y+ +K L + FS +G + ++MD S +S+GFGFV + +HEEA+KA+SEM
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 81 NGKTLDGRVIVVDYAKPKTSFRS 103
NGK ++GR+I V A+ + +S
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQS 274
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
++ L NK L D FS +G ++ +V D S+G+GFV F +HE A +A+ M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETHEAANRAIQTM 158
Query: 81 NGKTLDGRVIVVDYAKPK 98
NG L+ R + V + K +
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
YV L + L F YG + A ++ + SKGFGFV F+S EEA KA++EM
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 81 NGKTLDGRVIVVDYAKPK 98
NG+ + + + V A+ K
Sbjct: 354 NGRIVSTKPLYVALAQRK 371
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
YV + + + L FS++G+VV A +V DR + +S+GFGFVT AS E A++ ++
Sbjct: 233 YVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLD 292
Query: 82 GKTLDGRVIVVDYAKPKT 99
G++LDGR I V+ A+ ++
Sbjct: 293 GQSLDGRTIRVNVAEDRS 310
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
+V L + ++GL+ F Q G V A ++ +R +D+S+GFGFVT ++ EEAEKA+ N
Sbjct: 139 FVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYN 198
Query: 82 GKTLDGRVIVVDYA--------KPKTSFRSGMPIARGP-PESIADRVKVNFFDEEPK 129
++GR++ V+ A +P +F I G P I D F E K
Sbjct: 199 RYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGK 255
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 47/71 (66%)
Query: 22 YVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81
+V GL+ T K L F +YG +++ ++ DR ++KS+GF FVTF S +A+ A +MN
Sbjct: 11 FVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDMN 70
Query: 82 GKTLDGRVIVV 92
GK LDG+ I+V
Sbjct: 71 GKYLDGKAIMV 81
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80
C+V GL++ T + + F+++G+V ++ I++DR + +SKGF FVTF + A+ M
Sbjct: 10 CFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRM 69
Query: 81 NGKTLDGRVIVV 92
NG+ LDGR I
Sbjct: 70 NGQELDGRNITA 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,434,102
Number of Sequences: 539616
Number of extensions: 1843436
Number of successful extensions: 6269
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 208
Number of HSP's that attempted gapping in prelim test: 4679
Number of HSP's gapped (non-prelim): 1652
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)