Query 032812
Match_columns 133
No_of_seqs 104 out of 1482
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:15:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 8.7E-20 1.9E-24 119.2 14.2 86 15-100 31-116 (144)
2 KOG0122 Translation initiation 99.8 5.8E-18 1.3E-22 116.2 10.0 95 4-98 165-269 (270)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.1E-17 2.3E-22 123.3 12.2 83 17-99 268-350 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.6E-17 5.7E-22 121.2 11.9 84 17-100 2-85 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 5.1E-17 1.1E-21 119.5 11.1 84 15-98 104-187 (346)
6 PF00076 RRM_1: RNA recognitio 99.7 1.1E-16 2.4E-21 91.8 9.8 70 21-91 1-70 (70)
7 PF14259 RRM_6: RNA recognitio 99.7 2E-15 4.4E-20 86.9 10.0 70 21-91 1-70 (70)
8 TIGR01659 sex-lethal sex-letha 99.7 2.5E-15 5.3E-20 110.6 12.7 83 17-99 192-276 (346)
9 TIGR01645 half-pint poly-U bin 99.6 3.8E-15 8.2E-20 115.7 12.7 82 17-98 203-284 (612)
10 KOG0121 Nuclear cap-binding pr 99.6 1E-15 2.2E-20 95.9 7.0 81 16-96 34-114 (153)
11 TIGR01628 PABP-1234 polyadenyl 99.6 5.7E-15 1.2E-19 115.0 11.3 79 20-98 2-80 (562)
12 TIGR01645 half-pint poly-U bin 99.6 4.1E-15 8.8E-20 115.5 9.9 82 15-96 104-185 (612)
13 KOG0113 U1 small nuclear ribon 99.6 6.7E-15 1.5E-19 103.7 9.5 82 15-96 98-179 (335)
14 KOG0149 Predicted RNA-binding 99.6 4.2E-15 9.1E-20 101.7 8.1 82 15-97 9-90 (247)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.9E-14 4.2E-19 110.7 12.3 83 16-98 293-375 (509)
16 KOG0107 Alternative splicing f 99.6 7.5E-15 1.6E-19 96.5 8.3 78 15-97 7-84 (195)
17 PLN03120 nucleic acid binding 99.6 1.6E-14 3.5E-19 101.3 10.5 76 18-97 4-79 (260)
18 TIGR01622 SF-CC1 splicing fact 99.6 2E-14 4.3E-19 109.4 11.4 79 18-96 186-264 (457)
19 smart00362 RRM_2 RNA recogniti 99.6 3.8E-14 8.3E-19 80.7 9.6 72 20-93 1-72 (72)
20 KOG4207 Predicted splicing fac 99.6 1.3E-14 2.9E-19 97.8 8.7 82 16-97 11-92 (256)
21 KOG0148 Apoptosis-promoting RN 99.6 9.9E-15 2.1E-19 101.8 8.2 83 17-99 61-143 (321)
22 KOG0125 Ataxin 2-binding prote 99.6 1E-14 2.2E-19 104.0 8.4 83 14-98 92-174 (376)
23 KOG0111 Cyclophilin-type pepti 99.6 2.2E-15 4.7E-20 102.5 4.3 83 16-98 8-90 (298)
24 KOG0105 Alternative splicing f 99.6 2.2E-14 4.7E-19 95.3 8.7 112 17-131 5-130 (241)
25 KOG0415 Predicted peptidyl pro 99.6 8.8E-15 1.9E-19 105.5 6.8 97 1-97 222-318 (479)
26 TIGR01628 PABP-1234 polyadenyl 99.6 4.5E-14 9.7E-19 110.0 11.1 83 16-99 283-365 (562)
27 TIGR01622 SF-CC1 splicing fact 99.5 1.1E-13 2.4E-18 105.4 12.5 81 16-97 87-167 (457)
28 PLN03213 repressor of silencin 99.5 6.6E-14 1.4E-18 104.8 9.6 78 16-97 8-87 (759)
29 smart00360 RRM RNA recognition 99.5 1.2E-13 2.5E-18 78.3 8.6 71 23-93 1-71 (71)
30 KOG0117 Heterogeneous nuclear 99.5 8.8E-14 1.9E-18 102.7 9.5 83 16-98 81-164 (506)
31 TIGR01648 hnRNP-R-Q heterogene 99.5 1.1E-13 2.4E-18 107.3 9.8 80 16-96 56-136 (578)
32 KOG0148 Apoptosis-promoting RN 99.5 1.7E-13 3.6E-18 95.7 9.7 81 13-99 159-239 (321)
33 cd00590 RRM RRM (RNA recogniti 99.5 7.1E-13 1.5E-17 75.7 10.3 74 20-94 1-74 (74)
34 KOG0131 Splicing factor 3b, su 99.5 5.3E-14 1.1E-18 93.1 6.2 83 14-96 5-87 (203)
35 KOG0145 RNA-binding protein EL 99.5 1.2E-13 2.6E-18 96.1 8.1 84 17-100 40-123 (360)
36 KOG0130 RNA-binding protein RB 99.5 1.3E-13 2.8E-18 87.4 7.4 82 17-98 71-152 (170)
37 PLN03121 nucleic acid binding 99.5 4.2E-13 9.2E-18 93.0 10.4 76 17-96 4-79 (243)
38 COG0724 RNA-binding proteins ( 99.5 3.9E-13 8.5E-18 94.4 10.3 79 18-96 115-193 (306)
39 KOG0114 Predicted RNA-binding 99.5 4.8E-13 1E-17 81.1 8.8 79 16-97 16-94 (124)
40 TIGR01648 hnRNP-R-Q heterogene 99.5 1.1E-12 2.4E-17 101.8 13.0 76 17-100 232-309 (578)
41 KOG0126 Predicted RNA-binding 99.5 6.7E-15 1.4E-19 97.4 0.7 80 16-95 33-112 (219)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 8.5E-13 1.8E-17 101.3 11.4 78 16-98 273-351 (481)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 6.8E-13 1.5E-17 101.8 10.8 77 17-99 1-79 (481)
44 KOG0108 mRNA cleavage and poly 99.4 4E-13 8.6E-18 100.9 8.3 80 19-98 19-98 (435)
45 KOG0144 RNA-binding protein CU 99.4 1.5E-13 3.3E-18 101.1 5.6 83 17-100 123-208 (510)
46 KOG0109 RNA-binding protein LA 99.4 1.1E-12 2.4E-17 92.5 7.6 98 19-124 3-100 (346)
47 PF13893 RRM_5: RNA recognitio 99.4 5.8E-12 1.3E-16 69.4 8.6 56 35-95 1-56 (56)
48 KOG0127 Nucleolar protein fibr 99.4 4.1E-12 8.8E-17 96.1 9.2 85 14-98 288-378 (678)
49 smart00361 RRM_1 RNA recogniti 99.4 9.1E-12 2E-16 71.7 8.4 61 32-92 2-69 (70)
50 KOG0145 RNA-binding protein EL 99.4 1.4E-11 3E-16 86.0 10.5 83 16-98 276-358 (360)
51 KOG0127 Nucleolar protein fibr 99.4 5E-12 1.1E-16 95.6 8.9 84 17-101 116-199 (678)
52 KOG0124 Polypyrimidine tract-b 99.3 1E-12 2.3E-17 95.3 4.6 77 19-95 114-190 (544)
53 KOG0117 Heterogeneous nuclear 99.3 4.3E-12 9.2E-17 93.9 7.6 75 18-100 259-333 (506)
54 KOG0144 RNA-binding protein CU 99.3 2.5E-12 5.4E-17 94.8 6.4 82 16-97 32-116 (510)
55 KOG4206 Spliceosomal protein s 99.3 8.1E-12 1.8E-16 85.3 8.3 87 15-104 6-96 (221)
56 KOG4212 RNA-binding protein hn 99.3 1.4E-11 3.1E-16 91.2 8.1 78 18-96 44-122 (608)
57 KOG0146 RNA-binding protein ET 99.3 6.8E-12 1.5E-16 87.8 5.8 85 15-99 282-366 (371)
58 KOG1457 RNA binding protein (c 99.3 1.2E-10 2.5E-15 79.8 10.9 91 13-103 29-123 (284)
59 KOG0147 Transcriptional coacti 99.2 2.2E-11 4.7E-16 92.1 6.4 77 21-97 281-357 (549)
60 KOG0146 RNA-binding protein ET 99.2 4.6E-11 1E-15 83.7 6.0 82 16-98 17-101 (371)
61 KOG0131 Splicing factor 3b, su 99.2 1.1E-10 2.4E-15 77.5 6.6 84 16-99 94-178 (203)
62 KOG0123 Polyadenylate-binding 99.2 3.3E-10 7.1E-15 84.3 9.4 78 21-101 79-156 (369)
63 KOG0109 RNA-binding protein LA 99.1 1.2E-10 2.7E-15 82.3 6.4 82 16-105 76-157 (346)
64 KOG4208 Nucleolar RNA-binding 99.1 2.8E-10 6.1E-15 76.8 7.7 83 16-98 47-130 (214)
65 KOG4205 RNA-binding protein mu 99.1 1.6E-10 3.5E-15 83.7 6.0 112 17-129 5-123 (311)
66 KOG0123 Polyadenylate-binding 99.1 4.8E-10 1E-14 83.4 8.2 101 19-129 2-102 (369)
67 KOG0132 RNA polymerase II C-te 99.1 4.8E-10 1E-14 87.9 7.9 75 17-97 420-494 (894)
68 TIGR01642 U2AF_lg U2 snRNP aux 99.1 1.3E-09 2.8E-14 84.1 10.0 82 16-97 407-501 (509)
69 KOG0124 Polypyrimidine tract-b 99.1 5.1E-10 1.1E-14 81.6 7.2 80 18-97 210-289 (544)
70 KOG0110 RNA-binding protein (R 99.1 1.5E-10 3.3E-15 89.8 4.7 82 17-98 612-693 (725)
71 KOG0153 Predicted RNA-binding 99.1 1.2E-09 2.7E-14 78.8 8.7 76 16-97 226-302 (377)
72 KOG0533 RRM motif-containing p 99.0 6.1E-09 1.3E-13 73.0 10.7 83 15-98 80-162 (243)
73 KOG4661 Hsp27-ERE-TATA-binding 99.0 2.3E-09 5E-14 82.1 7.7 81 17-97 404-484 (940)
74 KOG0110 RNA-binding protein (R 98.9 5.7E-09 1.2E-13 81.2 8.1 76 20-96 517-596 (725)
75 KOG4212 RNA-binding protein hn 98.9 4.3E-09 9.2E-14 78.3 6.9 74 17-95 535-608 (608)
76 KOG0116 RasGAP SH3 binding pro 98.9 1.1E-08 2.4E-13 76.9 8.9 79 18-97 288-366 (419)
77 KOG0151 Predicted splicing reg 98.9 6E-09 1.3E-13 81.3 6.7 83 15-97 171-256 (877)
78 KOG1548 Transcription elongati 98.9 1.2E-08 2.7E-13 73.7 7.8 81 16-97 132-220 (382)
79 KOG4205 RNA-binding protein mu 98.8 1.2E-08 2.5E-13 74.1 6.9 84 17-101 96-179 (311)
80 KOG0106 Alternative splicing f 98.8 8.9E-09 1.9E-13 70.8 5.5 72 19-98 2-73 (216)
81 KOG4660 Protein Mei2, essentia 98.7 1.1E-08 2.5E-13 77.7 3.8 72 15-91 72-143 (549)
82 KOG4211 Splicing factor hnRNP- 98.7 1.8E-07 4E-12 70.5 9.6 80 15-98 7-86 (510)
83 KOG4209 Splicing factor RNPS1, 98.7 8.6E-08 1.9E-12 67.1 7.4 83 15-98 98-180 (231)
84 KOG0226 RNA-binding proteins [ 98.7 1.8E-08 3.8E-13 70.3 3.6 85 15-99 187-271 (290)
85 PF04059 RRM_2: RNA recognitio 98.6 1E-06 2.2E-11 53.6 9.2 78 19-96 2-85 (97)
86 KOG4454 RNA binding protein (R 98.6 2.2E-08 4.7E-13 68.6 1.8 79 15-95 6-84 (267)
87 KOG1190 Polypyrimidine tract-b 98.5 1.9E-06 4.1E-11 63.9 10.9 76 18-98 297-373 (492)
88 KOG0120 Splicing factor U2AF, 98.4 3.5E-07 7.6E-12 69.9 4.3 83 16-98 287-369 (500)
89 PF11608 Limkain-b1: Limkain b 98.4 3.1E-06 6.6E-11 49.8 7.1 69 19-97 3-76 (90)
90 KOG4211 Splicing factor hnRNP- 98.4 2.1E-06 4.5E-11 64.9 7.7 78 16-95 101-179 (510)
91 KOG1457 RNA binding protein (c 98.3 7.3E-07 1.6E-11 61.4 3.9 67 16-86 208-274 (284)
92 KOG0147 Transcriptional coacti 98.2 5.3E-07 1.2E-11 68.7 1.6 81 15-96 176-256 (549)
93 KOG1995 Conserved Zn-finger pr 98.2 1.7E-06 3.8E-11 63.0 3.9 84 16-99 64-155 (351)
94 KOG4206 Spliceosomal protein s 98.2 1.6E-05 3.5E-10 54.8 7.9 77 15-96 143-220 (221)
95 KOG0106 Alternative splicing f 98.1 6.3E-06 1.4E-10 56.9 5.0 71 17-95 98-168 (216)
96 PF08777 RRM_3: RNA binding mo 98.0 1.9E-05 4.1E-10 48.9 5.9 59 19-83 2-60 (105)
97 KOG4210 Nuclear localization s 98.0 7.8E-06 1.7E-10 59.1 4.2 85 16-101 182-267 (285)
98 COG5175 MOT2 Transcriptional r 98.0 2.8E-05 6.1E-10 56.7 6.5 79 19-97 115-202 (480)
99 KOG4849 mRNA cleavage factor I 98.0 8.4E-06 1.8E-10 59.6 3.5 80 10-89 72-153 (498)
100 KOG3152 TBP-binding protein, a 97.9 6.2E-06 1.4E-10 57.8 2.1 73 17-89 73-157 (278)
101 KOG1365 RNA-binding protein Fu 97.9 2.7E-05 5.9E-10 57.6 5.0 79 16-95 278-359 (508)
102 KOG1548 Transcription elongati 97.8 0.00013 2.8E-09 53.3 7.5 79 16-98 263-352 (382)
103 KOG4307 RNA binding protein RB 97.8 0.00014 3E-09 57.7 8.1 77 18-94 867-943 (944)
104 KOG0120 Splicing factor U2AF, 97.8 0.00011 2.3E-09 56.7 7.4 64 34-97 425-491 (500)
105 KOG0105 Alternative splicing f 97.7 0.00065 1.4E-08 45.9 9.3 63 17-86 114-176 (241)
106 KOG1456 Heterogeneous nuclear 97.7 0.00029 6.3E-09 52.2 8.2 81 13-98 115-199 (494)
107 KOG1190 Polypyrimidine tract-b 97.6 0.00021 4.4E-09 53.4 6.6 77 16-97 412-490 (492)
108 PF08675 RNA_bind: RNA binding 97.6 0.00081 1.8E-08 39.6 7.1 56 17-81 8-63 (87)
109 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00034 7.4E-09 37.8 5.0 52 19-77 2-53 (53)
110 KOG2314 Translation initiation 97.4 0.00073 1.6E-08 52.5 7.3 78 16-94 56-140 (698)
111 KOG1456 Heterogeneous nuclear 97.4 0.0015 3.3E-08 48.5 8.7 79 15-98 284-363 (494)
112 KOG0129 Predicted RNA-binding 97.4 0.0012 2.5E-08 50.7 8.1 65 16-81 257-327 (520)
113 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.001 2.2E-08 40.8 6.3 76 18-95 6-89 (100)
114 KOG1855 Predicted RNA-binding 97.3 0.00061 1.3E-08 51.2 5.5 78 16-93 229-319 (484)
115 KOG1365 RNA-binding protein Fu 97.3 0.0018 3.8E-08 48.3 7.5 71 18-90 161-235 (508)
116 KOG0129 Predicted RNA-binding 97.3 0.0012 2.6E-08 50.6 6.7 66 14-79 366-432 (520)
117 PF10309 DUF2414: Protein of u 97.2 0.0029 6.2E-08 35.3 6.5 54 19-80 6-62 (62)
118 KOG0128 RNA-binding protein SA 97.2 0.00032 7E-09 56.5 2.9 79 18-97 736-814 (881)
119 PF08952 DUF1866: Domain of un 97.0 0.0068 1.5E-07 39.5 7.4 57 34-99 52-108 (146)
120 KOG0112 Large RNA-binding prot 96.9 0.0015 3.4E-08 53.1 4.5 78 14-97 451-530 (975)
121 KOG1996 mRNA splicing factor [ 96.7 0.0086 1.9E-07 43.3 6.9 64 33-96 301-365 (378)
122 KOG2202 U2 snRNP splicing fact 96.7 0.00099 2.1E-08 47.0 1.7 63 33-96 83-146 (260)
123 KOG0115 RNA-binding protein p5 96.6 0.0042 9.1E-08 43.9 4.6 66 17-83 30-95 (275)
124 KOG2193 IGF-II mRNA-binding pr 96.5 0.0023 5E-08 48.3 3.0 77 19-101 2-79 (584)
125 KOG4307 RNA binding protein RB 96.5 0.0024 5.3E-08 50.9 3.0 81 14-95 430-511 (944)
126 KOG0112 Large RNA-binding prot 96.3 0.001 2.2E-08 54.1 0.2 80 17-97 371-450 (975)
127 KOG4676 Splicing factor, argin 96.3 0.013 2.8E-07 44.0 5.4 75 18-93 7-84 (479)
128 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.0094 2E-07 40.3 4.3 82 16-97 5-97 (176)
129 PF07576 BRAP2: BRCA1-associat 96.1 0.15 3.3E-06 31.8 8.9 68 18-87 12-81 (110)
130 KOG2416 Acinus (induces apopto 95.5 0.016 3.5E-07 45.6 3.5 76 15-96 441-520 (718)
131 KOG0128 RNA-binding protein SA 95.2 0.001 2.2E-08 53.8 -3.9 68 19-86 668-735 (881)
132 KOG0804 Cytoplasmic Zn-finger 95.1 0.14 3E-06 39.3 7.2 70 16-87 72-142 (493)
133 KOG2068 MOT2 transcription fac 95.1 0.0077 1.7E-07 44.1 0.6 80 19-98 78-163 (327)
134 PF11767 SET_assoc: Histone ly 94.8 0.36 7.7E-06 27.3 6.9 55 29-92 11-65 (66)
135 PF15023 DUF4523: Protein of u 94.8 0.3 6.6E-06 31.9 7.1 72 16-95 84-159 (166)
136 PF04847 Calcipressin: Calcipr 94.7 0.15 3.2E-06 34.8 6.0 61 31-97 8-70 (184)
137 KOG2591 c-Mpl binding protein, 93.9 0.31 6.6E-06 38.5 6.8 70 17-93 174-247 (684)
138 KOG4285 Mitotic phosphoprotein 92.8 0.73 1.6E-05 33.7 6.9 68 19-94 198-266 (350)
139 KOG2135 Proteins containing th 92.7 0.095 2.1E-06 40.3 2.4 74 17-97 371-445 (526)
140 PF03880 DbpA: DbpA RNA bindin 91.3 1.7 3.7E-05 24.8 6.3 58 29-95 12-74 (74)
141 KOG4574 RNA-binding protein (c 90.8 0.23 5.1E-06 40.9 2.9 77 19-101 299-377 (1007)
142 KOG4210 Nuclear localization s 90.5 0.26 5.6E-06 35.9 2.7 80 17-96 87-166 (285)
143 KOG2253 U1 snRNP complex, subu 88.3 0.41 8.8E-06 38.4 2.5 74 12-94 34-107 (668)
144 KOG4483 Uncharacterized conser 86.1 2.6 5.6E-05 32.2 5.5 56 16-78 389-445 (528)
145 KOG4410 5-formyltetrahydrofola 85.7 2.9 6.3E-05 30.5 5.4 47 18-70 330-377 (396)
146 KOG2193 IGF-II mRNA-binding pr 85.6 0.024 5.3E-07 43.0 -5.2 76 18-96 80-155 (584)
147 KOG4660 Protein Mei2, essentia 82.7 3.5 7.6E-05 32.6 5.1 55 42-96 413-471 (549)
148 KOG2318 Uncharacterized conser 74.1 34 0.00073 27.7 8.1 82 15-96 171-306 (650)
149 PF07530 PRE_C2HC: Associated 72.0 13 0.00028 21.0 4.2 62 33-97 2-64 (68)
150 smart00596 PRE_C2HC PRE_C2HC d 69.1 12 0.00027 21.2 3.6 61 33-96 2-63 (69)
151 KOG4454 RNA binding protein (R 66.1 1.4 3E-05 31.0 -0.7 75 14-89 76-154 (267)
152 KOG4019 Calcineurin-mediated s 63.9 12 0.00026 25.5 3.4 74 18-97 10-89 (193)
153 KOG4676 Splicing factor, argin 58.2 1.2 2.5E-05 33.9 -2.3 65 18-87 151-215 (479)
154 PF10567 Nab6_mRNP_bdg: RNA-re 57.7 39 0.00085 24.9 5.3 79 18-96 15-106 (309)
155 PF02714 DUF221: Domain of unk 56.3 17 0.00037 26.6 3.5 34 63-98 1-34 (325)
156 PF15513 DUF4651: Domain of un 52.5 40 0.00086 18.8 3.7 20 33-52 9-28 (62)
157 COG0724 RNA-binding proteins ( 47.9 27 0.00058 23.8 3.3 40 15-54 222-261 (306)
158 KOG2295 C2H2 Zn-finger protein 47.7 2.5 5.4E-05 33.6 -2.1 73 17-89 230-302 (648)
159 PF03468 XS: XS domain; Inter 47.5 41 0.00088 21.1 3.7 37 31-70 30-66 (116)
160 PRK11901 hypothetical protein; 46.5 92 0.002 23.4 5.8 61 16-81 243-305 (327)
161 KOG4365 Uncharacterized conser 45.3 4.8 0.0001 31.2 -0.9 76 21-97 6-81 (572)
162 PRK10905 cell division protein 42.5 1.3E+02 0.0028 22.6 6.0 62 16-81 245-307 (328)
163 PF07292 NID: Nmi/IFP 35 domai 41.1 19 0.0004 21.5 1.4 25 16-40 50-74 (88)
164 KOG0156 Cytochrome P450 CYP2 s 38.6 74 0.0016 25.2 4.7 63 18-90 32-97 (489)
165 PF14893 PNMA: PNMA 34.4 32 0.00069 25.8 2.0 26 16-41 16-41 (331)
166 KOG2891 Surface glycoprotein [ 33.3 37 0.0008 25.0 2.1 34 18-51 149-194 (445)
167 COG5507 Uncharacterized conser 32.6 69 0.0015 19.6 2.9 22 59-80 65-86 (117)
168 PRK14548 50S ribosomal protein 32.5 1.1E+02 0.0024 18.0 5.4 56 22-80 24-81 (84)
169 PF13773 DUF4170: Domain of un 31.4 62 0.0013 18.4 2.3 28 64-91 29-56 (69)
170 TIGR03636 L23_arch archaeal ri 29.8 1.2E+02 0.0026 17.6 5.4 57 21-80 16-74 (77)
171 KOG4008 rRNA processing protei 29.1 53 0.0011 23.5 2.2 33 16-48 38-70 (261)
172 PF09702 Cas_Csa5: CRISPR-asso 26.8 89 0.0019 19.3 2.7 23 15-40 61-83 (105)
173 KOG1295 Nonsense-mediated deca 26.6 1.1E+02 0.0023 23.5 3.6 69 18-86 7-78 (376)
174 PF03439 Spt5-NGN: Early trans 26.4 1.1E+02 0.0024 17.7 3.1 26 59-84 43-68 (84)
175 KOG4213 RNA-binding protein La 26.0 1.1E+02 0.0025 21.0 3.3 56 19-79 112-169 (205)
176 PF11823 DUF3343: Protein of u 25.3 1.3E+02 0.0029 16.7 3.3 26 62-87 3-28 (73)
177 COG0030 KsgA Dimethyladenosine 24.4 1.6E+02 0.0035 21.3 4.1 33 18-50 95-127 (259)
178 PF13046 DUF3906: Protein of u 23.3 1.3E+02 0.0027 16.9 2.6 32 32-65 32-63 (64)
179 COG5193 LHP1 La protein, small 22.9 43 0.00092 25.9 0.9 59 19-77 175-243 (438)
180 PRK11634 ATP-dependent RNA hel 22.5 4.2E+02 0.0092 21.8 6.5 61 27-96 496-561 (629)
181 PF15407 Spo7_2_N: Sporulation 22.3 31 0.00068 19.4 0.1 23 16-38 25-47 (67)
182 PF00398 RrnaAD: Ribosomal RNA 21.4 96 0.0021 22.1 2.5 31 18-48 97-129 (262)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=8.7e-20 Score=119.17 Aligned_cols=86 Identities=41% Similarity=0.726 Sum_probs=80.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....++|||+|||+++++++|+++|..||.|.++.++.+..++.++++|||+|.+.++|++|++.|++..|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032812 95 AKPKTS 100 (133)
Q Consensus 95 ~~~~~~ 100 (133)
+..+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976544
No 2
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=5.8e-18 Score=116.16 Aligned_cols=95 Identities=25% Similarity=0.444 Sum_probs=87.5
Q ss_pred hhcccceecc----------cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHH
Q 032812 4 QLLTLHVYIC----------RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEA 73 (133)
Q Consensus 4 ~~~~~~~~~~----------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a 73 (133)
.+++|++... .+++..+|.|.||+.++++++|+++|..||.|..+.+.+++.+|.++|||||.|.+.++|
T Consensus 165 ~yvpP~mR~ga~~~~g~~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA 244 (270)
T KOG0122|consen 165 KYVPPSMRAGADRASGSDMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDA 244 (270)
T ss_pred cccCccccCCcccccccccccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHH
Confidence 4566666554 456889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 74 EKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 74 ~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
.+|+..|+|.-.+.-.|+|+|++++
T Consensus 245 ~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 245 ARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred HHHHHHccCcccceEEEEEEecCCC
Confidence 9999999999999999999999875
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=1.1e-17 Score=123.28 Aligned_cols=83 Identities=31% Similarity=0.471 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
.+..|||+|||+++++++|.++|++||.|.+++++.+..++.++|+|||+|.+.++|..|+..|||..++|+.|+|.+..
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCC
Q 032812 97 PKT 99 (133)
Q Consensus 97 ~~~ 99 (133)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 765
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=2.6e-17 Score=121.24 Aligned_cols=84 Identities=30% Similarity=0.522 Sum_probs=79.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+..+|||+|||..+++++|+++|..||+|.+|.++.++.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46789999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCCC
Q 032812 97 PKTS 100 (133)
Q Consensus 97 ~~~~ 100 (133)
+...
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 6543
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=5.1e-17 Score=119.49 Aligned_cols=84 Identities=26% Similarity=0.414 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....++|||+|||+++++++|+++|..||.|.+|+++.+..+++++++|||+|.+.++|+.|+..|++..+.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
+++.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 8753
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.72 E-value=1.1e-16 Score=91.78 Aligned_cols=70 Identities=44% Similarity=0.714 Sum_probs=66.5
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 21 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
|||+|||.++++++|+++|..||.+..+.+..+ .++..+++|||+|.+.++|+.|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 4888999999999999999999999999999999885
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=2e-15 Score=86.87 Aligned_cols=70 Identities=36% Similarity=0.691 Sum_probs=64.4
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 21 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
|||+|||+++++++|.++|..||.|..+.+..++. +..+++|||+|.+.++|..|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999999875 88999999999999999999999999999999874
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=2.5e-15 Score=110.65 Aligned_cols=83 Identities=30% Similarity=0.512 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEEE
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG--RVIVVDY 94 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~--~~l~v~~ 94 (133)
..++|||+|||.++++++|+++|..||.|..+.++.++.+++.+++|||+|.+.++|++|+..|++..+.+ ..|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998899999999999999999999999999998865 6899998
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
++...
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 87543
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=3.8e-15 Score=115.66 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
...+|||+|||.++++++|+++|+.||.|.++.+..+..++..+|||||+|.+.++|..|+..||+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999998889999999999999999999999999999999999999887
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
.+
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 54
No 10
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1e-15 Score=95.94 Aligned_cols=81 Identities=33% Similarity=0.564 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
-.+++|||+||++.++++.|.++|..+|+|..+-+-.++.+....|++||+|.+.++|+.|+..++|..++++.|++.+-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46799999999999999999999999999999999999988889999999999999999999999999999999999875
Q ss_pred c
Q 032812 96 K 96 (133)
Q Consensus 96 ~ 96 (133)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.62 E-value=5.7e-15 Score=115.04 Aligned_cols=79 Identities=32% Similarity=0.540 Sum_probs=75.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 20 LCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 20 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
+|||+|||.++++++|.++|..||.|.+|++.++..+++++|+|||+|.+.++|++|+..|++..+.|+.|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 6999999999999999999999999999999999988999999999999999999999999999999999999998643
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.61 E-value=4.1e-15 Score=115.47 Aligned_cols=82 Identities=33% Similarity=0.513 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....++|||+|||+.+++++|+++|..||.|.++.++.++.+++++|||||+|.+.++|+.|+..|||..++|+.|+|..
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999986
Q ss_pred ec
Q 032812 95 AK 96 (133)
Q Consensus 95 ~~ 96 (133)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 53
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=6.7e-15 Score=103.73 Aligned_cols=82 Identities=30% Similarity=0.579 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
.++-+||||+-|++++++..|+..|..||.|+.+.++.++.+|+++|||||+|...-+..+|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ec
Q 032812 95 AK 96 (133)
Q Consensus 95 ~~ 96 (133)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 54
No 14
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=4.2e-15 Score=101.71 Aligned_cols=82 Identities=33% Similarity=0.548 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
++.-++||||||+|.+..++|+++|++||+|.+..++.|+.+|+++|++||.|.+.++|.+|++ -.+-.|+|++..+..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccch
Confidence 3456899999999999999999999999999999999999999999999999999999999995 456778999988887
Q ss_pred ecC
Q 032812 95 AKP 97 (133)
Q Consensus 95 ~~~ 97 (133)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 653
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.60 E-value=1.9e-14 Score=110.72 Aligned_cols=83 Identities=19% Similarity=0.372 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
....+|||+|||..+++++|+++|..||.|..+.++.+..+|..+|+|||+|.+.+.|..|+..|+|..++|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred cCC
Q 032812 96 KPK 98 (133)
Q Consensus 96 ~~~ 98 (133)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 643
No 16
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=7.5e-15 Score=96.52 Aligned_cols=78 Identities=28% Similarity=0.465 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
.+-+++|||+||+..++..+|+..|..||.+..+.+-.. ..|||||+|.++-+|+.|+..|+|..|.|..|+|+.
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 355899999999999999999999999999999987553 568999999999999999999999999999999998
Q ss_pred ecC
Q 032812 95 AKP 97 (133)
Q Consensus 95 ~~~ 97 (133)
+.-
T Consensus 82 S~G 84 (195)
T KOG0107|consen 82 STG 84 (195)
T ss_pred ecC
Confidence 864
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.6e-14 Score=101.31 Aligned_cols=76 Identities=20% Similarity=0.321 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
.++|||+|||+.+++++|+++|+.||.|.++.++.+.. .+|+|||+|.+.++|+.|+ .|+|..+.|+.|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999988753 4689999999999999999 5999999999999998763
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.59 E-value=2e-14 Score=109.38 Aligned_cols=79 Identities=38% Similarity=0.638 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
..+|||+|||..+++++|+++|..||.|..+.++.+..+|..+|+|||+|.+.++|..|+..|+|..+.|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999998888999999999999999999999999999999999999975
No 19
>smart00362 RRM_2 RNA recognition motif.
Probab=99.58 E-value=3.8e-14 Score=80.67 Aligned_cols=72 Identities=39% Similarity=0.653 Sum_probs=66.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 20 LCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 20 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
+|+|+|||.++++++|+++|..||.+..+.+..+. +..+++|||+|.+.++|+.|+..+++..+.|..+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888775 6788999999999999999999999999999988763
No 20
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=1.3e-14 Score=97.77 Aligned_cols=82 Identities=37% Similarity=0.559 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
+.-..|.|.||.+-++.++|..+|++||.|-+|.|.++..++..+|||||-|....+|+.|+++|+|..++|+.|+|..|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cC
Q 032812 96 KP 97 (133)
Q Consensus 96 ~~ 97 (133)
+.
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 63
No 21
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=9.9e-15 Score=101.78 Aligned_cols=83 Identities=37% Similarity=0.603 Sum_probs=79.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
.+..+||+-|...++.++|++.|.+||+|.++++++|..+++++||+||.|.+.++|+.||..|+|..|+++.|+..|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 032812 97 PKT 99 (133)
Q Consensus 97 ~~~ 99 (133)
.+.
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 765
No 22
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=1e-14 Score=104.01 Aligned_cols=83 Identities=29% Similarity=0.552 Sum_probs=76.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
+.+.-+.|+|+|+|+...+.||+.+|.+||+|.+|.|+.+. .-++||+||.|.+.++|++|-.+|||..+.|++|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34556899999999999999999999999999999999985 4478999999999999999999999999999999999
Q ss_pred EecCC
Q 032812 94 YAKPK 98 (133)
Q Consensus 94 ~~~~~ 98 (133)
.+..+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 98754
No 23
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.2e-15 Score=102.48 Aligned_cols=83 Identities=39% Similarity=0.582 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
...++||||+|...+++.-|.+.|.+||+|.++.+..+-.+++++|++||+|...++|.+|+.-||+..+.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 032812 96 KPK 98 (133)
Q Consensus 96 ~~~ 98 (133)
++.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 863
No 24
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.2e-14 Score=95.30 Aligned_cols=112 Identities=25% Similarity=0.301 Sum_probs=86.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
..+.|||+|||.++.+.+|+++|.+||.|.+|.+... ....+||||+|.+.-+|+.|+..-+|..++|++|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 5688999999999999999999999999999987432 2346899999999999999999999999999999999986
Q ss_pred CCCCC--CCC------------CCCCCCCCCCccccccccccccCCccc
Q 032812 97 PKTSF--RSG------------MPIARGPPESIADRVKVNFFDEEPKTQ 131 (133)
Q Consensus 97 ~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (133)
.-.+. ..+ .....++++....++.+.....++.||
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQ 130 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQ 130 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchH
Confidence 43211 111 111123344445566666778888877
No 25
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.8e-15 Score=105.46 Aligned_cols=97 Identities=23% Similarity=0.382 Sum_probs=92.1
Q ss_pred ChhhhcccceecccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 032812 1 MLQQLLTLHVYICRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80 (133)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 80 (133)
+++.++|+.+.+...++...|||..|++-++.++|.-+|+.||.|..|.++++..+|....+|||+|.+.++|++|..+|
T Consensus 222 ~iLEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKM 301 (479)
T KOG0415|consen 222 VILEMVGDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKM 301 (479)
T ss_pred hHHHHhcCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhh
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeCCeEEEEEEecC
Q 032812 81 NGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 81 ~~~~~~~~~l~v~~~~~ 97 (133)
++.-|++++|+|.++.+
T Consensus 302 dNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 302 DNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceeeccceEEeehhhh
Confidence 99999999999998754
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.56 E-value=4.5e-14 Score=110.02 Aligned_cols=83 Identities=34% Similarity=0.583 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
....+|||+||+.++++++|+++|+.||.|.++.++.+. ++..+|+|||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 356789999999999999999999999999999999984 8999999999999999999999999999999999999998
Q ss_pred cCCC
Q 032812 96 KPKT 99 (133)
Q Consensus 96 ~~~~ 99 (133)
..+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 7653
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.55 E-value=1.1e-13 Score=105.35 Aligned_cols=81 Identities=31% Similarity=0.464 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.+.++|||+|||..+++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|.+|+. |+|..+.|+.|.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 357899999999999999999999999999999999998899999999999999999999995 8999999999999886
Q ss_pred cC
Q 032812 96 KP 97 (133)
Q Consensus 96 ~~ 97 (133)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 54
No 28
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=6.6e-14 Score=104.84 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCH--HHHHHHHHHhCCCeeCCeEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASH--EEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
.....||||||++.+++++|...|..||.|..+.+++. +| +|||||+|.+. .++.+|+..|||....|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 45688999999999999999999999999999999844 55 89999999987 78999999999999999999999
Q ss_pred EecC
Q 032812 94 YAKP 97 (133)
Q Consensus 94 ~~~~ 97 (133)
.|++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8865
No 29
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=1.2e-13 Score=78.33 Aligned_cols=71 Identities=44% Similarity=0.708 Sum_probs=65.8
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 23 VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 23 v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
|+|||..+++++|+++|..||.+..+.+..+..++..+++|||+|.+.++|..|+..+++..++|+.++|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999998887678889999999999999999999999999999988763
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=8.8e-14 Score=102.68 Aligned_cols=83 Identities=25% Similarity=0.422 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-CCeEEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL-DGRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~~~~l~v~~ 94 (133)
.-.+-||||.||.++.+++|..+|...|+|-+++++.++.+|.++|||||.|.+.++|+.|++.||+..| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999998 589999997
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
+..+
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 7543
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.51 E-value=1.1e-13 Score=107.29 Aligned_cols=80 Identities=26% Similarity=0.399 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD-GRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-~~~l~v~~ 94 (133)
...++|||+|||+++++++|.++|..||.|.+++++++ .++.++|+|||+|.+.++|++|+..||+..+. ++.|.|+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 59999999999999999999999999999885 67776665
Q ss_pred ec
Q 032812 95 AK 96 (133)
Q Consensus 95 ~~ 96 (133)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 53
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.7e-13 Score=95.75 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=75.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....++++||+||++..++++++++.|..||.|.++++-.++ ||+||.|.+.+.|.+||..+|+.+|.|..+++
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 455789999999999999999999999999999999987765 89999999999999999999999999999999
Q ss_pred EEecCCC
Q 032812 93 DYAKPKT 99 (133)
Q Consensus 93 ~~~~~~~ 99 (133)
.|.+...
T Consensus 233 sWGKe~~ 239 (321)
T KOG0148|consen 233 SWGKEGD 239 (321)
T ss_pred eccccCC
Confidence 9988643
No 33
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.50 E-value=7.1e-13 Score=75.72 Aligned_cols=74 Identities=42% Similarity=0.703 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 20 LCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 20 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
+|+|+|||..+++++|+++|..+|.+..+.+..+..+ ..+++|||+|.+.++|..|+..+++..++|..+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4889999999999999999999999999998877633 6789999999999999999999999999999998863
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.50 E-value=5.3e-14 Score=93.08 Aligned_cols=83 Identities=35% Similarity=0.458 Sum_probs=79.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
..+...+|||+||+.-++++.|.++|-+.|+|..+.+.+++.++.++||||++|.++++|+-|++.|+...+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eec
Q 032812 94 YAK 96 (133)
Q Consensus 94 ~~~ 96 (133)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 887
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.2e-13 Score=96.14 Aligned_cols=84 Identities=29% Similarity=0.513 Sum_probs=78.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
..+.|.|-=||..+++++++.+|...|+|.+|++++++.+|.+.||+||.|.++.+|++|+..|||..+..+.|+|.+++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34667777899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 032812 97 PKTS 100 (133)
Q Consensus 97 ~~~~ 100 (133)
+.+.
T Consensus 120 PSs~ 123 (360)
T KOG0145|consen 120 PSSD 123 (360)
T ss_pred CChh
Confidence 7543
No 36
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.3e-13 Score=87.36 Aligned_cols=82 Identities=26% Similarity=0.492 Sum_probs=78.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
..-.|||.++...+++++|.+.|..||+|+.+.+.++..+|.-+|||.|+|.+..+|++|+..+||..+.|..|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
.+
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 54
No 37
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=4.2e-13 Score=92.98 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
...+|||+||++.+++++|+++|+.||+|.+|.++++. ...++|||+|.+++.++.|+ .|+|..|.+..|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999998874 34479999999999999999 699999999999998754
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=3.9e-13 Score=94.37 Aligned_cols=79 Identities=39% Similarity=0.672 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
..+|||+|||..+++++|.++|..||.+..+.+..++.++..+|+|||+|.+.++|..|+..+++..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5999999999999999999999999999999999998899999999999999999999999999999999999999964
No 39
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=4.8e-13 Score=81.09 Aligned_cols=79 Identities=27% Similarity=0.522 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
..++.|||.|||+.++.++..++|..||.|..+++--.+ ..+|.|||.|.+..+|..|++.|+|..+.++.+.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 357999999999999999999999999999999985543 35789999999999999999999999999999999987
Q ss_pred cC
Q 032812 96 KP 97 (133)
Q Consensus 96 ~~ 97 (133)
.+
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 54
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=1.1e-12 Score=101.79 Aligned_cols=76 Identities=34% Similarity=0.577 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC--CCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQY--GQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..++|||+||++++++++|+++|..| |.|..+.++ +++|||+|.+.++|.+|+..||+..|+|+.|+|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 999998764 35899999999999999999999999999999999
Q ss_pred ecCCCC
Q 032812 95 AKPKTS 100 (133)
Q Consensus 95 ~~~~~~ 100 (133)
++++..
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
No 41
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=6.7e-15 Score=97.37 Aligned_cols=80 Identities=31% Similarity=0.578 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.++.-|||||||+.+++.||-..|++||.+..+.+++++.||+++||||+.|.+.-+---|+.-|||..|.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 46788999999999999999999999999999999999999999999999999988888889999999999999999853
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.46 E-value=8.5e-13 Score=101.28 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 16 HFCPLCYVAGLSF-YTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
.++.+|||+||++ .+++++|+++|..||.|..+.++.++ +|+|||+|.+.++|..|+..|||..+.|+.|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999998763 58999999999999999999999999999999999
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8653
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.46 E-value=6.8e-13 Score=101.83 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCeeCCeEEEEEE
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM--NGKTLDGRVIVVDY 94 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~~~~l~v~~ 94 (133)
++++|||+|||+++++++|+++|..||.|..+.++.+ +++|||+|.+.++|++|+..+ ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999988754 379999999999999999874 67899999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
+..+.
T Consensus 75 s~~~~ 79 (481)
T TIGR01649 75 STSQE 79 (481)
T ss_pred cCCcc
Confidence 97543
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.45 E-value=4e-13 Score=100.90 Aligned_cols=80 Identities=35% Similarity=0.645 Sum_probs=77.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
..+||||+|+++++++|..+|...|.|.+++++.|+.+|+.+||+|++|.+.+.+..|+..|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998654
No 45
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.5e-13 Score=101.11 Aligned_cols=83 Identities=27% Similarity=0.475 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-eCC--eEEEEE
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKT-LDG--RVIVVD 93 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~--~~l~v~ 93 (133)
+.++|||+.|+..+++++++++|..||.|.+|.+.++. .+.++|+|||.|.+.+.|.+|++.|||.. +.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 47899999999999999999999999999999999997 88999999999999999999999999975 454 489999
Q ss_pred EecCCCC
Q 032812 94 YAKPKTS 100 (133)
Q Consensus 94 ~~~~~~~ 100 (133)
|++.+..
T Consensus 202 FADtqkd 208 (510)
T KOG0144|consen 202 FADTQKD 208 (510)
T ss_pred ecccCCC
Confidence 9987543
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=1.1e-12 Score=92.46 Aligned_cols=98 Identities=27% Similarity=0.476 Sum_probs=79.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
.++||||||..+++.+|+.+|++||+|.+|+++.+ ++||..++...++.|+..||+..|+|..|.|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46899999999999999999999999999999765 7999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCcccccccccc
Q 032812 99 TSFRSGMPIARGPPESIADRVKVNFF 124 (133)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (133)
+......-.+...+.-...+++..|.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe 100 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFE 100 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhc
Confidence 54433333333333333445555544
No 47
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=5.8e-12 Score=69.38 Aligned_cols=56 Identities=43% Similarity=0.812 Sum_probs=50.0
Q ss_pred HHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 35 LSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 35 l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
|.++|+.||.|..+.+.... +++|||+|.+.++|..|+..|||..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999886553 579999999999999999999999999999999986
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=4.1e-12 Score=96.10 Aligned_cols=85 Identities=32% Similarity=0.486 Sum_probs=76.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh-----CC-CeeCC
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM-----NG-KTLDG 87 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-----~~-~~~~~ 87 (133)
+.+...+|||+|||+++++++|++.|++||.+....++.++.++.+.|.|||.|.+..+|+.||... .| ..++|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 3456699999999999999999999999999999999999999999999999999999999999876 22 45789
Q ss_pred eEEEEEEecCC
Q 032812 88 RVIVVDYAKPK 98 (133)
Q Consensus 88 ~~l~v~~~~~~ 98 (133)
+.|.|..+-.+
T Consensus 368 R~Lkv~~Av~R 378 (678)
T KOG0127|consen 368 RLLKVTLAVTR 378 (678)
T ss_pred cEEeeeeccch
Confidence 99999987543
No 49
>smart00361 RRM_1 RNA recognition motif.
Probab=99.36 E-value=9.1e-12 Score=71.75 Aligned_cols=61 Identities=31% Similarity=0.654 Sum_probs=54.1
Q ss_pred HHHHHHHhc----cCCCeEEEE-EeeCCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 32 NKGLSDAFS----QYGQVVEAN-IVMDRVS--DKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 32 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
+++|+++|+ .||.+.++. ++.++.+ +..+|++||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 6666555 888999999999999999999999999999999876
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.4e-11 Score=86.01 Aligned_cols=83 Identities=31% Similarity=0.449 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
...-.|||=||.+++++..|..+|.+||.|..++++++..+.+++||+||...++++|..|+..|||..++++.|.|.+.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred cCC
Q 032812 96 KPK 98 (133)
Q Consensus 96 ~~~ 98 (133)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 654
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=5e-12 Score=95.64 Aligned_cols=84 Identities=36% Similarity=0.550 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+.-.|.|+||||.+...+|+.+|+.||.+.++.|.+.. .|+..|||||.|....+|..|+..+|+..|+|++|-|.||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 36788999999999999999999999999999999776 55556999999999999999999999999999999999997
Q ss_pred CCCCC
Q 032812 97 PKTSF 101 (133)
Q Consensus 97 ~~~~~ 101 (133)
.+..+
T Consensus 195 ~Kd~y 199 (678)
T KOG0127|consen 195 DKDTY 199 (678)
T ss_pred ccccc
Confidence 76443
No 52
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1e-12 Score=95.34 Aligned_cols=77 Identities=35% Similarity=0.562 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
+.+|||.+.+.+.++.|+..|-.||.|+++.+.++..+++++|||||+|.-++.|+-|++.|||..++|+.|+|...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999998843
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=4.3e-12 Score=93.91 Aligned_cols=75 Identities=39% Similarity=0.573 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
-+.|||.||+.+++++.|++.|..||.+..|..++| ||||.|.+.++|.+|++.+||..|+|..|.|.+|++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 488999999999999999999999999999977644 899999999999999999999999999999999987
Q ss_pred CCC
Q 032812 98 KTS 100 (133)
Q Consensus 98 ~~~ 100 (133)
...
T Consensus 331 ~~k 333 (506)
T KOG0117|consen 331 VDK 333 (506)
T ss_pred hhh
Confidence 544
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2.5e-12 Score=94.82 Aligned_cols=82 Identities=27% Similarity=0.451 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---CeEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD---GRVIVV 92 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---~~~l~v 92 (133)
.+.-++||+.+|..++|.||+++|++||.|.+|.+++|+.++..+|+|||.|.+.++|.+|+.+||+.... ...|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 35678999999999999999999999999999999999999999999999999999999999999997642 458899
Q ss_pred EEecC
Q 032812 93 DYAKP 97 (133)
Q Consensus 93 ~~~~~ 97 (133)
++++.
T Consensus 112 k~Ad~ 116 (510)
T KOG0144|consen 112 KYADG 116 (510)
T ss_pred cccch
Confidence 99874
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.34 E-value=8.1e-12 Score=85.27 Aligned_cols=87 Identities=24% Similarity=0.400 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHH----HhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSD----AFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVI 90 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 90 (133)
-.++.+|||.||+.-+..++|+. +|++||.|.+|.... +.+.+|.|||.|.+.+.|-.|+..|+|..+.|..+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34566999999999999998888 999999999986532 67789999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCC
Q 032812 91 VVDYAKPKTSFRSG 104 (133)
Q Consensus 91 ~v~~~~~~~~~~~~ 104 (133)
++.||+.++.....
T Consensus 83 riqyA~s~sdii~~ 96 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQ 96 (221)
T ss_pred heecccCccchhhc
Confidence 99999987765333
No 56
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.29 E-value=1.4e-11 Score=91.19 Aligned_cols=78 Identities=24% Similarity=0.422 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhc-cCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFS-QYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
.+.+||.|+|+++.|.+|+++++ +.|+|..|.+..+. +|+.+|+|.|+|++++.+++|++.||...+.|+.|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 46699999999999999999998 57999999999997 99999999999999999999999999999999999998654
No 57
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=6.8e-12 Score=87.83 Aligned_cols=85 Identities=27% Similarity=0.443 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
.++++.|||=.||.+..+.+|..+|-.||.|.+.++..|+.+..+++++||.|+++.++++||..|||..|+.++|+|..
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 46789999999999999999999999999999999888888989999999999999999999999999999999999998
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
.+++.
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 87654
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.27 E-value=1.2e-10 Score=79.75 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=73.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEee-CCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---Ce
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVM-DRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD---GR 88 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---~~ 88 (133)
+.++.-++|||.+||.++...+|+.+|+.|..-..+.+.. ++....++.+||+.|.+...|++|+..|||..++ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 3445679999999999999999999999986555554432 3323346789999999999999999999999997 77
Q ss_pred EEEEEEecCCCCCCC
Q 032812 89 VIVVDYAKPKTSFRS 103 (133)
Q Consensus 89 ~l~v~~~~~~~~~~~ 103 (133)
.|+++++++..+..+
T Consensus 109 tLhiElAKSNtK~kr 123 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKR 123 (284)
T ss_pred eeEeeehhcCccccc
Confidence 999999987665433
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.23 E-value=2.2e-11 Score=92.05 Aligned_cols=77 Identities=36% Similarity=0.659 Sum_probs=73.5
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 21 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
||||||.++++++.|..+|..||.|..+.+.++..+|.++||+||+|.+.++|..|+..|||..+-|+.|+|.....
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 89999999999999999999999999999999988999999999999999999999999999999999999987543
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=4.6e-11 Score=83.72 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---CeEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD---GRVIVV 92 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---~~~l~v 92 (133)
.+.++||||.|...-.|+|++.+|..||.+.+|.+.+.. .|.++|+|||.|.+..+|++||..|||.... ...|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 478999999999999999999999999999999999887 8889999999999999999999999998643 468999
Q ss_pred EEecCC
Q 032812 93 DYAKPK 98 (133)
Q Consensus 93 ~~~~~~ 98 (133)
++++..
T Consensus 96 K~ADTd 101 (371)
T KOG0146|consen 96 KFADTD 101 (371)
T ss_pred Eeccch
Confidence 999753
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.17 E-value=1.1e-10 Score=77.51 Aligned_cols=84 Identities=35% Similarity=0.534 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVE-ANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
+.+..+||+||.+++++..|.+.|+.||.+.. ..++++..+|..++++||.|.+.+.+.+|+..++|..+.+++++|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 45689999999999999999999999998865 47888888899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
+..+.
T Consensus 174 a~k~~ 178 (203)
T KOG0131|consen 174 AFKKD 178 (203)
T ss_pred EEecC
Confidence 98654
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.3e-10 Score=84.25 Aligned_cols=78 Identities=35% Similarity=0.612 Sum_probs=72.4
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Q 032812 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPKTS 100 (133)
Q Consensus 21 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~~~ 100 (133)
+||.||+.+++..+|.++|+.||.|++|++..+. .| .+|+ ||+|.+.++|.+|+..+||..+.+..|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999987 55 8888 9999999999999999999999999999998876554
Q ss_pred C
Q 032812 101 F 101 (133)
Q Consensus 101 ~ 101 (133)
+
T Consensus 156 r 156 (369)
T KOG0123|consen 156 R 156 (369)
T ss_pred h
Confidence 4
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.14 E-value=1.2e-10 Score=82.27 Aligned_cols=82 Identities=27% Similarity=0.475 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
...++++|+|+.+.++..++++.|..||.+.+|+++.+ ++||.|.-.++|..|+..|++..++|.+++|..+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 46789999999999999999999999999999999765 7999999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 032812 96 KPKTSFRSGM 105 (133)
Q Consensus 96 ~~~~~~~~~~ 105 (133)
.++-.-.+++
T Consensus 148 tsrlrtapgm 157 (346)
T KOG0109|consen 148 TSRLRTAPGM 157 (346)
T ss_pred ccccccCCCC
Confidence 8776554444
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.14 E-value=2.8e-10 Score=76.84 Aligned_cols=83 Identities=24% Similarity=0.358 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC-CCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQY-GQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
.....+|+..+|..+.+..+..+|.+| |.+...++.+++.||.++|||||+|.+.+.|.-|.+.||+.-+.+.-|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345778899999999999999999988 7888889999999999999999999999999999999999999999999998
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7654
No 65
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.11 E-value=1.6e-10 Score=83.70 Aligned_cols=112 Identities=28% Similarity=0.464 Sum_probs=90.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+..++||++|+|+++++.|++.|.+||++.+|.+++++.++..++++||+|++.+...+++. ...+.|+++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999888888874 45678999999999988
Q ss_pred CCCCCCCCCC-------CCCCCCCCccccccccccccCCc
Q 032812 97 PKTSFRSGMP-------IARGPPESIADRVKVNFFDEEPK 129 (133)
Q Consensus 97 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 129 (133)
++........ +-.+.+.....+....++...++
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~ 123 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGK 123 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccce
Confidence 7654432221 12355666666666666655553
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=4.8e-10 Score=83.40 Aligned_cols=101 Identities=28% Similarity=0.396 Sum_probs=84.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
..+||| +++++..|.+.|+.+|.+.++++.++. + +.|+|||.|.++.+|++|+..||...+.|+.+++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368898 899999999999999999999999998 5 9999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCccccccccccccCCc
Q 032812 99 TSFRSGMPIARGPPESIADRVKVNFFDEEPK 129 (133)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (133)
... -+-..-++.+.++...++|+..|.
T Consensus 76 ~~~----~~i~nl~~~~~~~~~~d~f~~~g~ 102 (369)
T KOG0123|consen 76 PSL----VFIKNLDESIDNKSLYDTFSEFGN 102 (369)
T ss_pred Cce----eeecCCCcccCcHHHHHHHHhhcC
Confidence 543 222234556667766677666554
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=4.8e-10 Score=87.89 Aligned_cols=75 Identities=19% Similarity=0.445 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
.++|||||+|+.++++.||..+|+.||+|.+|.++.. +++|||......+|.+|+.+|.+..+.+..|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4699999999999999999999999999999987654 4899999999999999999999999999999999996
Q ss_pred C
Q 032812 97 P 97 (133)
Q Consensus 97 ~ 97 (133)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 68
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.07 E-value=1.3e-09 Score=84.11 Aligned_cols=82 Identities=24% Similarity=0.359 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHhccCCCeEEEEEeeCC---CCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 032812 16 HFCPLCYVAGLSFYT----------SNKGLSDAFSQYGQVVEANIVMDR---VSDKSKGFGFVTFASHEEAEKALSEMNG 82 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~----------~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~~ 82 (133)
.++.+|+|.|+...- ..++|++.|..||.|..|.+.+.. .++.+.|++||+|.+.++|++|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 356788999986421 125789999999999999987642 2455679999999999999999999999
Q ss_pred CeeCCeEEEEEEecC
Q 032812 83 KTLDGRVIVVDYAKP 97 (133)
Q Consensus 83 ~~~~~~~l~v~~~~~ 97 (133)
..|+|+.|.|.|...
T Consensus 487 r~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFNDRVVVAAFYGE 501 (509)
T ss_pred CEECCeEEEEEEeCH
Confidence 999999999998764
No 69
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=5.1e-10 Score=81.59 Aligned_cols=80 Identities=21% Similarity=0.397 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
-..|||..+.++.+++||+..|..||+|..|.+-+.+..+.++||+||+|.+..+...|+..||=..++|..|+|..+-.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 36899999999999999999999999999999999998888999999999999999999999999999999999987653
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=1.5e-10 Score=89.78 Aligned_cols=82 Identities=24% Similarity=0.462 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
..+.|+|.|+|+..+-.+++.+|..||.+.+|++......+.++|+|||+|-++.+|..|+.+|..+.++|++|.++|++
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 35799999999999999999999999999999998876667789999999999999999999999999999999999998
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
..
T Consensus 692 ~d 693 (725)
T KOG0110|consen 692 SD 693 (725)
T ss_pred cc
Confidence 64
No 71
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=1.2e-09 Score=78.80 Aligned_cols=76 Identities=29% Similarity=0.505 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM-NGKTLDGRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~l~v~~ 94 (133)
..-++|||++|...+++.+|.+.|.+||+|.++.+...+ ++|||+|.+.+.|+.|...+ +...|+|.+|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 456899999999999999999999999999999887654 69999999999999988774 44567999999999
Q ss_pred ecC
Q 032812 95 AKP 97 (133)
Q Consensus 95 ~~~ 97 (133)
+.+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 987
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.02 E-value=6.1e-09 Score=72.99 Aligned_cols=83 Identities=24% Similarity=0.452 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
+...++|+|.|||+.+.++||+++|..||.+..+.+..++ .|...|.|-|.|...++|.++++.++++.++|..+++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445889999999999999999999999988888777776 899999999999999999999999999999999999987
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
..+.
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 7543
No 73
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.98 E-value=2.3e-09 Score=82.06 Aligned_cols=81 Identities=36% Similarity=0.559 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
..+.+||.+|+..+...+|+.+|++||+|.-..++.+..+.-.++|+||...+..+|.+||..||...+.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45899999999999999999999999999999999888777789999999999999999999999999999999999886
Q ss_pred C
Q 032812 97 P 97 (133)
Q Consensus 97 ~ 97 (133)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=5.7e-09 Score=81.23 Aligned_cols=76 Identities=36% Similarity=0.580 Sum_probs=69.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCC----cceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 20 LCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDK----SKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 20 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
+||+.||+++++.+++...|...|.|.++.|...+ ... +.|+|||+|.+.++|++|+..|+|..++|..|.|+++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 39999999999999999999999999999887765 222 4599999999999999999999999999999999998
Q ss_pred c
Q 032812 96 K 96 (133)
Q Consensus 96 ~ 96 (133)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.91 E-value=4.3e-09 Score=78.34 Aligned_cols=74 Identities=41% Similarity=0.512 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
..++|+|.|||.++||..|++-|..||.+....++ +.|+.+| .|.|.++++|+.|+..|++..++|+.|+|.+.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 45779999999999999999999999999998883 3566665 89999999999999999999999999999863
No 76
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.90 E-value=1.1e-08 Score=76.87 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=67.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
..+|||.|||++++..+|+++|..||.|+...+....-.++..++|||+|.+.+.++.++.+ +-..+++++|.|+..+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 35599999999999999999999999999887755433445459999999999999999975 67889999999997654
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.87 E-value=6e-09 Score=81.28 Aligned_cols=83 Identities=23% Similarity=0.397 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCC---CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDR---VSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
.+..+.+|++||++.++++.|...|..||.+..+++++-. +....+.++||.|.+..+|++|++.|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4557899999999999999999999999999999887643 3455678999999999999999999999999999999
Q ss_pred EEEecC
Q 032812 92 VDYAKP 97 (133)
Q Consensus 92 v~~~~~ 97 (133)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.87 E-value=1.2e-08 Score=73.71 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVE--------ANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG 87 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 87 (133)
..++.|||.|||.++|.+++.++|+.+|-|.. |.+.++. .|.-+|-|.+.|...+++.-|+..|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 45788999999999999999999999996643 7788887 69999999999999999999999999999999
Q ss_pred eEEEEEEecC
Q 032812 88 RVIVVDYAKP 97 (133)
Q Consensus 88 ~~l~v~~~~~ 97 (133)
..|+|+.|+-
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999998864
No 79
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.84 E-value=1.2e-08 Score=74.10 Aligned_cols=84 Identities=30% Similarity=0.534 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
...++||++||.++++.+++++|.+||.|..+.++.+..+.+.++++||.|.+.+.+.+++. ..-+.|.++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35699999999999999999999999999999999999999999999999999999999885 57788999999999998
Q ss_pred CCCCC
Q 032812 97 PKTSF 101 (133)
Q Consensus 97 ~~~~~ 101 (133)
++...
T Consensus 175 pk~~~ 179 (311)
T KOG4205|consen 175 PKEVM 179 (311)
T ss_pred chhhc
Confidence 77654
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=8.9e-09 Score=70.84 Aligned_cols=72 Identities=32% Similarity=0.689 Sum_probs=65.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
..+||++||+.+.+.+++.+|..||++.++.+. .+++||+|.+..+|..|+..||+..+.+..+.++++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 368999999999999999999999999998762 367899999999999999999999999999999998753
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.1e-08 Score=77.74 Aligned_cols=72 Identities=28% Similarity=0.384 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
..+..+|+|-|||..+++++|..+|+.||+|+.++. +...++..||+|.+.-+|++|++.|++..+.|..|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456799999999999999999999999999999765 444578999999999999999999999999998887
No 82
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.70 E-value=1.8e-07 Score=70.47 Aligned_cols=80 Identities=26% Similarity=0.337 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
......|.+.+|||++|+++|.+||..++ |..+.+.+ .+|+..|.|||+|.+.++++.|++ .+...+..+.|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 35667788999999999999999999888 66655544 379999999999999999999996 588888899999887
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
+...
T Consensus 83 ~~~~ 86 (510)
T KOG4211|consen 83 AGGA 86 (510)
T ss_pred cCCc
Confidence 7543
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.69 E-value=8.6e-08 Score=67.15 Aligned_cols=83 Identities=23% Similarity=0.430 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.+.+|++|+.+.++.++++..|+.||.+..+.+..++..+..++++||+|.+.+.++.++. |++..+.+..+.+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4578999999999999999999999999999999999888888899999999999999999997 999999999999997
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
...+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7543
No 84
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.68 E-value=1.8e-08 Score=70.30 Aligned_cols=85 Identities=27% Similarity=0.410 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+...||+|-|.-+++++.|-..|.+|.....-.+++++.+++++|++||.|.+..++-.|+..|+|..++.+.|++.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 35678999999999999999999999999898889999999999999999999999999999999999999999998887
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
+.+++
T Consensus 267 S~wke 271 (290)
T KOG0226|consen 267 SEWKE 271 (290)
T ss_pred hhHHh
Confidence 66554
No 85
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.59 E-value=1e-06 Score=53.61 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=64.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccC--CCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC----CeEEEE
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQY--GQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD----GRVIVV 92 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----~~~l~v 92 (133)
+||+|.|+|...+.++|.+++... |..-.+.+..|-.++.+.|||||.|.+++.+....+.++|.... .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999998888642 55555667777778889999999999999999999999998764 445666
Q ss_pred EEec
Q 032812 93 DYAK 96 (133)
Q Consensus 93 ~~~~ 96 (133)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6665
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=2.2e-08 Score=68.58 Aligned_cols=79 Identities=22% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....++|||+|+...++++.|.++|.+.|.|..+.|...+ .+..+ +|||.|.++...+-|+..+||..+.+..+.+.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3457899999999999999999999999999999887665 55555 999999999999999999999999988887775
Q ss_pred e
Q 032812 95 A 95 (133)
Q Consensus 95 ~ 95 (133)
-
T Consensus 84 r 84 (267)
T KOG4454|consen 84 R 84 (267)
T ss_pred c
Confidence 4
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.54 E-value=1.9e-06 Score=63.92 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=67.9
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 18 CPLCYVAGLSFY-TSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 18 ~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+..|.|.||..+ ++.+.|.-+|..||+|.++.+...+. --|.|.|.+...|+-|+..|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678888998655 78999999999999999999987752 359999999999999999999999999999999987
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
..
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 53
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=3.5e-07 Score=69.92 Aligned_cols=83 Identities=23% Similarity=0.448 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.....+++++||...++..+++++..||.+....++.+..+|-++|+||.+|.+......|+..|||..+++..|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 45688999999999999999999999999999999999888899999999999999999999999999999999999988
Q ss_pred cCC
Q 032812 96 KPK 98 (133)
Q Consensus 96 ~~~ 98 (133)
...
T Consensus 367 ~~g 369 (500)
T KOG0120|consen 367 IVG 369 (500)
T ss_pred hcc
Confidence 654
No 89
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.39 E-value=3.1e-06 Score=49.79 Aligned_cols=69 Identities=25% Similarity=0.416 Sum_probs=46.8
Q ss_pred CeEEEcCCCCCCCHHHHHH----HhccCC-CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 19 PLCYVAGLSFYTSNKGLSD----AFSQYG-QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~----~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
..|+|.|||.+.+...++. ++..+| +|..+. .+.|+|-|.+.+.|..|.+.|+|-.+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5689999999988876554 444665 666661 2579999999999999999999999999999999
Q ss_pred EecC
Q 032812 94 YAKP 97 (133)
Q Consensus 94 ~~~~ 97 (133)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8754
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.37 E-value=2.1e-06 Score=64.93 Aligned_cols=78 Identities=26% Similarity=0.342 Sum_probs=64.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVE-ANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
.....|.+++||+.|+++||.+||...--+.. +.++.+. .++..|.|||.|++.+.|+.|+.. |...|+.+.|.|-.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 35688999999999999999999996554433 5555555 677999999999999999999964 77788888888875
Q ss_pred e
Q 032812 95 A 95 (133)
Q Consensus 95 ~ 95 (133)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 4
No 91
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.31 E-value=7.3e-07 Score=61.43 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=56.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD 86 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 86 (133)
..+.++||.||..++++++|+.+|+.|.....+++- ...+..+||++|.+.+.|..|+..|+|..+.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~----~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR----ARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe----cCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 457899999999999999999999999877666552 2224578999999999999999999987664
No 92
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.21 E-value=5.3e-07 Score=68.75 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
+-+.+++|+--++-..+..+|.++|..+|.|.++.++.+..++..+|.+||+|.+.+....|+ .|.|..+.|.+|-|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 345688888888888899999999999999999999999999999999999999999999999 6999999999999987
Q ss_pred ec
Q 032812 95 AK 96 (133)
Q Consensus 95 ~~ 96 (133)
..
T Consensus 255 sE 256 (549)
T KOG0147|consen 255 SE 256 (549)
T ss_pred cH
Confidence 64
No 93
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.20 E-value=1.7e-06 Score=63.02 Aligned_cols=84 Identities=24% Similarity=0.274 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVE--------ANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG 87 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 87 (133)
..+.++||-++|..++.++|.++|.++|.|.. +.+.+++.|++.++-|.|.|.+...|++|+..+++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 46789999999999999999999999997743 5677888899999999999999999999999999999999
Q ss_pred eEEEEEEecCCC
Q 032812 88 RVIVVDYAKPKT 99 (133)
Q Consensus 88 ~~l~v~~~~~~~ 99 (133)
..|+|..+..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999887654
No 94
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.17 E-value=1.6e-05 Score=54.75 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD-GRVIVVD 93 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-~~~l~v~ 93 (133)
..++..+++.|+|..++.+.+..+|.+|+....++++... .+.|||+|.+...+..|...+++..+. ...+.+.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5688999999999999999999999999999999887653 468999999999999999999999886 7778877
Q ss_pred Eec
Q 032812 94 YAK 96 (133)
Q Consensus 94 ~~~ 96 (133)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 664
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.11 E-value=6.3e-06 Score=56.94 Aligned_cols=71 Identities=34% Similarity=0.511 Sum_probs=62.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.++.+.+.+++..+.+.+|++.|..+|.+..... ..+.+||.|...+++..|+..|++..+.++.|++...
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 4677889999999999999999999999844433 3467999999999999999999999999999999654
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.05 E-value=1.9e-05 Score=48.88 Aligned_cols=59 Identities=31% Similarity=0.454 Sum_probs=39.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGK 83 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 83 (133)
..|.+.+++..++.++|++.|..||.|..|.+.... ..|+|-|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 467888899999999999999999999999885543 46899999999999999887654
No 97
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.01 E-value=7.8e-06 Score=59.10 Aligned_cols=85 Identities=22% Similarity=0.442 Sum_probs=75.0
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 16 HFCPLCY-VAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~-v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....++| +++++.+++.++|+..|..+|.+..+++..+..++...++|++.|.+...+..++.. +...+.+..+.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445555 999999999999999999999999999999999999999999999999999999876 78899999999998
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
..++...
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 8765443
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.98 E-value=2.8e-05 Score=56.74 Aligned_cols=79 Identities=27% Similarity=0.541 Sum_probs=61.3
Q ss_pred CeEEEcCCCCCCCHHH----H--HHHhccCCCeEEEEEeeCCCC-CCcc--eEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 032812 19 PLCYVAGLSFYTSNKG----L--SDAFSQYGQVVEANIVMDRVS-DKSK--GFGFVTFASHEEAEKALSEMNGKTLDGRV 89 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~----l--~~~f~~~g~i~~~~~~~~~~~-~~~~--g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 89 (133)
.-+||-+||+-+..++ | .++|.+||.|..+.+.+...+ .... ...||.|.+.++|..|+...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4578888888766554 2 678999999999977654311 1112 23599999999999999999999999999
Q ss_pred EEEEEecC
Q 032812 90 IVVDYAKP 97 (133)
Q Consensus 90 l~v~~~~~ 97 (133)
|+..|...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99998754
No 99
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.95 E-value=8.4e-06 Score=59.62 Aligned_cols=80 Identities=23% Similarity=0.415 Sum_probs=68.6
Q ss_pred eecccCCCCCeEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 032812 10 VYICRNHFCPLCYVAGLSFYTSNKGLSDAFSQYG--QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG 87 (133)
Q Consensus 10 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 87 (133)
..+.+......+|||||-|+++++||.+.+...| ++.++++..++.+|.++|||.+...+.......++.|....|.|
T Consensus 72 ~~~s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 72 PATSSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred ccccccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecC
Confidence 3344556667899999999999999999988776 77788888888899999999999999999999999999999877
Q ss_pred eE
Q 032812 88 RV 89 (133)
Q Consensus 88 ~~ 89 (133)
..
T Consensus 152 Q~ 153 (498)
T KOG4849|consen 152 QS 153 (498)
T ss_pred CC
Confidence 53
No 100
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.91 E-value=6.2e-06 Score=57.78 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCC--------CC----cceEEEEEeCCHHHHHHHHHHhCCCe
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVS--------DK----SKGFGFVTFASHEEAEKALSEMNGKT 84 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--------~~----~~g~afv~f~~~~~a~~a~~~l~~~~ 84 (133)
..-.||++++|+.++..-|+++|..||.|-.|.+.....+ |. .-.-++|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3478999999999999999999999999988877654433 11 12347899999999999999999999
Q ss_pred eCCeE
Q 032812 85 LDGRV 89 (133)
Q Consensus 85 ~~~~~ 89 (133)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99854
No 101
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.87 E-value=2.7e-05 Score=57.61 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC-CeEE--EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYG-QVVE--ANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
.....|.+++||+..+.++|-.+|..|. .|.. +.++.+. .|...|.|||++.+.+.|.+|....+......+.|.|
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 4466788999999999999999999986 3333 6666665 7889999999999999999999998888887888777
Q ss_pred EEe
Q 032812 93 DYA 95 (133)
Q Consensus 93 ~~~ 95 (133)
-.+
T Consensus 357 fp~ 359 (508)
T KOG1365|consen 357 FPC 359 (508)
T ss_pred eec
Confidence 654
No 102
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.81 E-value=0.00013 Score=53.33 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCC----CCC-------HHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 032812 16 HFCPLCYVAGLSF----YTS-------NKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKT 84 (133)
Q Consensus 16 ~~~~~l~v~~lp~----~~~-------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 84 (133)
...++|.+.|+-. ..+ .++|.+-+..||.+..+.+.-.+ ..|.+-|.|.+.++|..|++.|+|+.
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCee
Confidence 4568888888732 223 24666778899999999776443 45789999999999999999999999
Q ss_pred eCCeEEEEEEecCC
Q 032812 85 LDGRVIVVDYAKPK 98 (133)
Q Consensus 85 ~~~~~l~v~~~~~~ 98 (133)
++|+.|......-+
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999999876543
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.81 E-value=0.00014 Score=57.65 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=65.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
.+.|-+.|+|+.++-+||.+||..|-.+..--..+..+.|...|.+-|.|.+.++|.+|..-|++..|.++.+.+..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 45888999999999999999999998665433344445899999999999999999999999999999999888753
No 104
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.81 E-value=0.00011 Score=56.67 Aligned_cols=64 Identities=23% Similarity=0.448 Sum_probs=53.5
Q ss_pred HHHHHhccCCCeEEEEEeeC---CCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 34 GLSDAFSQYGQVVEANIVMD---RVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 34 ~l~~~f~~~g~i~~~~~~~~---~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
+++.-+.+||.|..|.+.+. .....+.|-.||+|.+.++++.|...|+|.++.++.+.+.|...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 55566788999999988765 22344677899999999999999999999999999999998754
No 105
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.73 E-value=0.00065 Score=45.91 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=56.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD 86 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 86 (133)
....|.|.+||.+-+|.+|++.++..|+++...+.++ +.+.|+|...++.+-|+..|....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3467789999999999999999999999999888766 47899999999999999999988765
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.72 E-value=0.00029 Score=52.20 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=64.9
Q ss_pred ccCCCCCeEEEcCC--CCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--e
Q 032812 13 CRNHFCPLCYVAGL--SFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG--R 88 (133)
Q Consensus 13 ~~~~~~~~l~v~~l--p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~--~ 88 (133)
++..+++.|.+.=| -+-++.+-|..++...|+|..+.+.+. +|. .|.|+|.+.+.|++|...|||..|+. +
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCC 189 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCC 189 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccce
Confidence 44456777766544 445788999999999999999987655 343 58999999999999999999999963 5
Q ss_pred EEEEEEecCC
Q 032812 89 VIVVDYAKPK 98 (133)
Q Consensus 89 ~l~v~~~~~~ 98 (133)
.|+|+++++.
T Consensus 190 TLKIeyAkP~ 199 (494)
T KOG1456|consen 190 TLKIEYAKPT 199 (494)
T ss_pred eEEEEecCcc
Confidence 8999998763
No 107
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.64 E-value=0.00021 Score=53.45 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCe-EEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-EEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQV-VEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGR-VIVVD 93 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~-~l~v~ 93 (133)
+++.++.+.|+|.++++++++..|..-|.. +...+ -++.+.+|.+.+.+.++|-.|+-.++++.++.. .++|.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf-----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF-----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee-----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 566799999999999999999999977644 44443 344567999999999999999999999999765 89999
Q ss_pred EecC
Q 032812 94 YAKP 97 (133)
Q Consensus 94 ~~~~ 97 (133)
++++
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 8875
No 108
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.57 E-value=0.00081 Score=39.61 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=43.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 81 (133)
..+..+++ +|..+...||.++|+.||.| .+.++-+. .|||...+.+.+..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 35666776 99999999999999999988 56666554 69999999999999998775
No 109
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.54 E-value=0.00034 Score=37.85 Aligned_cols=52 Identities=23% Similarity=0.468 Sum_probs=40.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHH
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKAL 77 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 77 (133)
+.|-|.|.+.+..+ .+...|..||+|....+. ....+.++.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 45778888877654 455588899999998774 23468999999999999874
No 110
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00073 Score=52.49 Aligned_cols=78 Identities=32% Similarity=0.497 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCCH------HHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-Ce
Q 032812 16 HFCPLCYVAGLSFYTSN------KGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD-GR 88 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~------~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-~~ 88 (133)
.....|.|.|.|.--.. ..|..+|+.+|++....+..+..+ ..+|+.|++|.+..+|+.|++.|||..++ +.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 55678889999864222 356788999999998888877744 49999999999999999999999999987 44
Q ss_pred EEEEEE
Q 032812 89 VIVVDY 94 (133)
Q Consensus 89 ~l~v~~ 94 (133)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 555553
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.43 E-value=0.0015 Score=48.50 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 15 NHFCPLCYVAGLSFY-TSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
..+...++|-+|... ++.+-|..+|=.||.|..+.+++.+ .|.|.|+..+..+.+.|+..||+..+-|.+|.|+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 356789999999876 5667889999999999999998765 3679999999999999999999999999999999
Q ss_pred EecCC
Q 032812 94 YAKPK 98 (133)
Q Consensus 94 ~~~~~ 98 (133)
.++..
T Consensus 359 ~SkQ~ 363 (494)
T KOG1456|consen 359 VSKQN 363 (494)
T ss_pred ecccc
Confidence 88743
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0012 Score=50.73 Aligned_cols=65 Identities=20% Similarity=0.427 Sum_probs=49.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCC---CCCcce---EEEEEeCCHHHHHHHHHHhC
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRV---SDKSKG---FGFVTFASHEEAEKALSEMN 81 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g---~afv~f~~~~~a~~a~~~l~ 81 (133)
.-.++||||+||++++++.|...|..||.+ .+.+..... .-..+| |+|+.|.++..+++.+....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 346899999999999999999999999976 455542211 111456 99999999999888776543
No 113
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.39 E-value=0.001 Score=40.81 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=50.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCC-------CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDR-------VSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVI 90 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 90 (133)
.+-|.|-|+|.. ..+.+.+.|+.||.|.+..-.... .......+..|.|.++.+|++|+. -||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 455777789987 457788899999999776411000 012245789999999999999996 59999988644
Q ss_pred -EEEEe
Q 032812 91 -VVDYA 95 (133)
Q Consensus 91 -~v~~~ 95 (133)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 45555
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.31 E-value=0.00061 Score=51.21 Aligned_cols=78 Identities=19% Similarity=0.127 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeC---CCC--CC--------cceEEEEEeCCHHHHHHHHHHhCC
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMD---RVS--DK--------SKGFGFVTFASHEEAEKALSEMNG 82 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~--~~--------~~g~afv~f~~~~~a~~a~~~l~~ 82 (133)
-+.++|.+.|||.+-.-+-|.++|..+|.|+.|++..- ..+ +. .+-+|+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999888999999999999999988654 211 11 256799999999999999998876
Q ss_pred CeeCCeEEEEE
Q 032812 83 KTLDGRVIVVD 93 (133)
Q Consensus 83 ~~~~~~~l~v~ 93 (133)
..-...-|+|.
T Consensus 309 e~~wr~glkvk 319 (484)
T KOG1855|consen 309 EQNWRMGLKVK 319 (484)
T ss_pred hhhhhhcchhh
Confidence 65444444444
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.28 E-value=0.0018 Score=48.34 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=55.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcc----CCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQ----YGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVI 90 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~----~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 90 (133)
.-.|.+++||+++++.++.++|.. -|....+.++... +|+..|-||+.|..+++|+.|+.+ |...++.+.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 456677999999999999999963 2355677777776 888999999999999999999965 5545554443
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0012 Score=50.64 Aligned_cols=66 Identities=26% Similarity=0.261 Sum_probs=59.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhc-cCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFS-QYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSE 79 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 79 (133)
..++.+|||||+||.-++.++|-.+|. -||.|..+-|=.|.+-+..+|-|=|.|.+..+.-+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 347889999999999999999999998 699999998877866788899999999999999999864
No 117
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.24 E-value=0.0029 Score=35.29 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=44.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccC---CCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQY---GQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 80 (133)
.+|+|.|+. +++.++++.+|..| .....+.|+-+. .|-|.|.+.+.|..|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 468899986 57889999999988 235688888775 5899999999999998754
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.16 E-value=0.00032 Score=56.50 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
+..++|.|.|+..+.++++.++..+|.+.++.++..+ .|+.+|.|++.|.+..++..+........+..+.+.+..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5788999999999999999999999999999888877 899999999999999999999888877777777777766543
No 119
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.00 E-value=0.0068 Score=39.51 Aligned_cols=57 Identities=35% Similarity=0.542 Sum_probs=44.2
Q ss_pred HHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Q 032812 34 GLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPKT 99 (133)
Q Consensus 34 ~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~~ 99 (133)
+|.+.|..||.+.-++++.+. -+|.|.+...|.+|+. ++|.++.|+.|+|+...+.+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 677778889988877776543 6999999999999995 89999999999999876543
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.90 E-value=0.0015 Score=53.09 Aligned_cols=78 Identities=22% Similarity=0.414 Sum_probs=67.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG--RVIV 91 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~--~~l~ 91 (133)
....++.+++++|..|+....+...|..||.|..|.+- .+..||+|.|.+...+++|+..|-|..+++ +++.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 34678999999999999999999999999999888762 245799999999999999999999999985 5688
Q ss_pred EEEecC
Q 032812 92 VDYAKP 97 (133)
Q Consensus 92 v~~~~~ 97 (133)
|.++..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 887754
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.75 E-value=0.0086 Score=43.27 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=51.9
Q ss_pred HHHHHHhccCCCeEEEEEeeCCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 33 KGLSDAFSQYGQVVEANIVMDRVSDKS-KGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 33 ~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+++++.+.+||.|..|.+-..+..... .--.||+|...++|-+|+--|||..|+|+.+..++..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 477888999999998877665433222 2347999999999999999999999999999988765
No 122
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.66 E-value=0.00099 Score=46.95 Aligned_cols=63 Identities=29% Similarity=0.486 Sum_probs=48.8
Q ss_pred HHHHHHhc-cCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 33 KGLSDAFS-QYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 33 ~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+++...|. +||+|..+.+-.+. .....|=++|.|...++|++|+..||+..+.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34544555 89999887543322 22246779999999999999999999999999999998763
No 123
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.62 E-value=0.0042 Score=43.92 Aligned_cols=66 Identities=29% Similarity=0.326 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGK 83 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 83 (133)
.+..|||.||+..+..+.+...|+.||++..-.++-+. .++..+-++|.|.+...+.+|+......
T Consensus 30 ~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 30 MHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ccceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccC
Confidence 34889999999999999999999999999765555443 6778888999999999999999876433
No 124
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.54 E-value=0.0023 Score=48.32 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=59.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeCCeEEEEEEecC
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGK-TLDGRVIVVDYAKP 97 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~-~~~~~~l~v~~~~~ 97 (133)
..+|++||.+.++..++..+|....-...-.++. ..|++|+++.+..-|..+++.++|. .+.|.++.+..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999999999999997542111111111 2379999999999999999999986 57899999998866
Q ss_pred CCCC
Q 032812 98 KTSF 101 (133)
Q Consensus 98 ~~~~ 101 (133)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 5443
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.49 E-value=0.0024 Score=50.88 Aligned_cols=81 Identities=20% Similarity=0.084 Sum_probs=66.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVE-ANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
.......|||..||..+++.++.++|...-.|.+ |.+.... +++.++.|||.|..++++..|..--+...++.+.|+|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 3456789999999999999999999997766766 7776666 7888999999999988888877655666778888988
Q ss_pred EEe
Q 032812 93 DYA 95 (133)
Q Consensus 93 ~~~ 95 (133)
...
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 854
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.34 E-value=0.001 Score=54.06 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
.+.+||++||+..+++.+|...|..+|.+.+|.+-.-+ -+....++|+.|.+...+..++..+.+..|....+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 57999999999999999999999999999999875543 34456789999999999999999999998877677777664
Q ss_pred C
Q 032812 97 P 97 (133)
Q Consensus 97 ~ 97 (133)
.
T Consensus 450 ~ 450 (975)
T KOG0112|consen 450 P 450 (975)
T ss_pred c
Confidence 4
No 127
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.25 E-value=0.013 Score=43.95 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVS---DKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...|.|.||.+.++.+.++.+|...|+|.++.++..... ....-.|||.|.+...+..|- .|.+..+-++.|-|-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEE
Confidence 348999999999999999999999999999988764322 224668999999988887776 466666555544444
No 128
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.21 E-value=0.0094 Score=40.27 Aligned_cols=82 Identities=10% Similarity=0.063 Sum_probs=51.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc-CCCe---EEEE--EeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQ-YGQV---VEAN--IVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG-- 87 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i---~~~~--~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~-- 87 (133)
....+|.|++||++++++++.+.+.. ++.. ..+. ............-|||.|.+.+++......++|..+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45678999999999999998887776 6655 2332 11111112235669999999999999999999987643
Q ss_pred ---eEEEEEEecC
Q 032812 88 ---RVIVVDYAKP 97 (133)
Q Consensus 88 ---~~l~v~~~~~ 97 (133)
....|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3567777754
No 129
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.09 E-value=0.15 Score=31.79 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=48.9
Q ss_pred CCeEEE-cCCCCCCCHHHHHHHhccC-CCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 032812 18 CPLCYV-AGLSFYTSNKGLSDAFSQY-GQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG 87 (133)
Q Consensus 18 ~~~l~v-~~lp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 87 (133)
...+.+ ...|..+..++|..+...+ ..|..++++++. ..++-.+.+.|.+...|......+||..++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444 4444445556666555555 466778888864 3467789999999999999999999998763
No 130
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.53 E-value=0.016 Score=45.56 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=60.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcc-CCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee---CCeEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQ-YGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL---DGRVI 90 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~~~~l 90 (133)
......|||.||-.-.+...|+.++.. .|.|.+. |+ .+.+..|||.|.+.++|-+...+|||..- +.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-----DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-----DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-----HHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 356889999999888899999999995 5566555 43 22456799999999999999999999863 45667
Q ss_pred EEEEec
Q 032812 91 VVDYAK 96 (133)
Q Consensus 91 ~v~~~~ 96 (133)
-+.|..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 777653
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.20 E-value=0.001 Score=53.75 Aligned_cols=68 Identities=25% Similarity=0.325 Sum_probs=57.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD 86 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 86 (133)
.++|++||+..+.+.+|...|..+|.+..+.+..+...++-+|.|+++|...+++.+|+.......++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 56789999999999999999999998888776656667889999999999999999999765554444
No 132
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.14 E-value=0.14 Score=39.27 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC-CCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQY-GQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG 87 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 87 (133)
..+..|+|-.+|-.++.-||-.|+..+ ..|..++++++. -..+-.+.|.|.+.++|......+||..++.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 347899999999999999999999875 578899999853 3356678999999999999999999998864
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.12 E-value=0.0077 Score=44.10 Aligned_cols=80 Identities=24% Similarity=0.464 Sum_probs=60.0
Q ss_pred CeEEEcCCCCCCCHHHH---HHHhccCCCeEEEEEeeCCC--CCC-cceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 19 PLCYVAGLSFYTSNKGL---SDAFSQYGQVVEANIVMDRV--SDK-SKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l---~~~f~~~g~i~~~~~~~~~~--~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
.-+|+-+|+..+..+++ .++|.+||.|..+....+.. .+. ....++|.|...++|..||...+|...+|+.+++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45677788877655433 45688999999998776551 111 2334899999999999999999999999988888
Q ss_pred EEecCC
Q 032812 93 DYAKPK 98 (133)
Q Consensus 93 ~~~~~~ 98 (133)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 876543
No 134
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.84 E-value=0.36 Score=27.26 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=43.1
Q ss_pred CCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 29 YTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 29 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
.++-++++..|+.|+ ...+. .++ +| -||.|.+..+|+.|....++..+.++.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 357789999999998 22332 232 33 589999999999999999999998888765
No 135
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.75 E-value=0.3 Score=31.90 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=51.4
Q ss_pred CCCCeEEEcCCCCCCCH-HH---HHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 16 HFCPLCYVAGLSFYTSN-KG---LSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~-~~---l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
++-.+|.|+=|..++.. +| +...++.||.|.++.+ - ++..|.|.|.+..+|=.|+.+++. ..-|..+.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----C--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----c--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 44567777766666543 34 4455778999999965 2 445799999999999999988765 55566666
Q ss_pred EEEe
Q 032812 92 VDYA 95 (133)
Q Consensus 92 v~~~ 95 (133)
+.|.
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 6654
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.73 E-value=0.15 Score=34.79 Aligned_cols=61 Identities=25% Similarity=0.350 Sum_probs=44.0
Q ss_pred CHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCeEEEEEEecC
Q 032812 31 SNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN--GKTLDGRVIVVDYAKP 97 (133)
Q Consensus 31 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~~~~l~v~~~~~ 97 (133)
.-..|+++|..|+.+........- +-..|.|.+.+.|..|...|+ +..+.|..+++-++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 346889999999988777554432 358999999999999999999 8999999999988843
No 137
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.92 E-value=0.31 Score=38.46 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=54.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcc--CCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--eeCCeEEEE
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQ--YGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGK--TLDGRVIVV 92 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~~~~l~v 92 (133)
.-+.|.|+-+|..+..++++.+|.. +.++.+|.+-... -=||.|.+..+|+.|.+.|... .|.|+.|-.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4467778999999999999999985 6788888775543 1389999999999999887653 466665544
Q ss_pred E
Q 032812 93 D 93 (133)
Q Consensus 93 ~ 93 (133)
+
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 138
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.85 E-value=0.73 Score=33.73 Aligned_cols=68 Identities=29% Similarity=0.353 Sum_probs=48.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE-EEEEE
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRV-IVVDY 94 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~-l~v~~ 94 (133)
.=|-|-++|+.-. .-+...|..||.|.+.... ..-.|-+|.|.+..+|++|+. .+|..|+|.. |-|..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 3444557776543 4567789999999776432 233588999999999999997 4899998754 34444
No 139
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.71 E-value=0.095 Score=40.32 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=57.6
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 17 FCPLCYVAGLSFYT-SNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 17 ~~~~l~v~~lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
+++.+-+.-.|+.. +.++|...|..||.|..|.+-.. .-.|.|.|.+..+|-.|. ..++..|+++.|++.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 44555555556554 55799999999999999876332 346899999999997776 36999999999999998
Q ss_pred cC
Q 032812 96 KP 97 (133)
Q Consensus 96 ~~ 97 (133)
.+
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 76
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.29 E-value=1.7 Score=24.81 Aligned_cols=58 Identities=28% Similarity=0.430 Sum_probs=33.2
Q ss_pred CCCHHHHHHHhccCC-----CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 29 YTSNKGLSDAFSQYG-----QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 29 ~~~~~~l~~~f~~~g-----~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.++..+|..++..-+ .|-.+.+.. .++||+... +.+..++..|++..+.|++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467778877776553 445566533 368998875 4788889999999999999999864
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.85 E-value=0.23 Score=40.88 Aligned_cols=77 Identities=27% Similarity=0.369 Sum_probs=61.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee--CCeEEEEEEec
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL--DGRVIVVDYAK 96 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~~~~l~v~~~~ 96 (133)
.+.++.|.+-..+-..|..+|..||.+.+.+..++- ..|.|+|...+.|-.|+++|+|.++ .|.+.+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 444455666667778999999999999998765554 5699999999999999999999876 47789999887
Q ss_pred CCCCC
Q 032812 97 PKTSF 101 (133)
Q Consensus 97 ~~~~~ 101 (133)
.-+..
T Consensus 373 ~~~~~ 377 (1007)
T KOG4574|consen 373 TLPMY 377 (1007)
T ss_pred ccccc
Confidence 64433
No 142
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=90.45 E-value=0.26 Score=35.89 Aligned_cols=80 Identities=28% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
...+.|++++.+.+.+.+...++..+|......+.........++++.+.|...+.+..++.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46788999999999888888889889988777776666678889999999999999999996544345555555544443
No 143
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.32 E-value=0.41 Score=38.38 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=61.9
Q ss_pred cccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 12 ICRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 12 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
....++..++||+|+...+..+-++.++..+|-|..+.... |+|-.|..+.....++..++...++|..+.
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 34456788999999999999999999999999887764322 789999999999999999999899887766
Q ss_pred EEE
Q 032812 92 VDY 94 (133)
Q Consensus 92 v~~ 94 (133)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 654
No 144
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.11 E-value=2.6 Score=32.20 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=47.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHH
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYG-QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS 78 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 78 (133)
+-.+.|-|-++|.....+||-..|..|+ ...+|.|+.+. +||..|.+...|..|+-
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 3457888999999998899999999886 55788888775 79999999999999884
No 145
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.75 E-value=2.9 Score=30.55 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=36.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCe-EEEEEeeCCCCCCcceEEEEEeCCH
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQV-VEANIVMDRVSDKSKGFGFVTFASH 70 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~afv~f~~~ 70 (133)
..-|+++|||.++.-.||+..++.-+.+ .++.|. .+.+-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 4669999999999999999999987744 455542 2456799999764
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=85.63 E-value=0.024 Score=42.99 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=62.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
.+++.|.|+|+...|+-+..++..||.+..|..+. +.......-+.|.+.+.+..++.+|+|..+.+..+++.|..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 46688999999999999999999999998875432 22223345678999999999999999999999999998853
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=82.68 E-value=3.5 Score=32.59 Aligned_cols=55 Identities=20% Similarity=0.368 Sum_probs=39.5
Q ss_pred CCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe---eC-CeEEEEEEec
Q 032812 42 YGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKT---LD-GRVIVVDYAK 96 (133)
Q Consensus 42 ~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~---~~-~~~l~v~~~~ 96 (133)
.|.--.+.+..|-.+....|||||.|.+.+++..+.++.||.. ++ .....+.|+.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 3433445555565567789999999999999999999999974 44 3345555654
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.13 E-value=34 Score=27.69 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=61.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccC----CCeEEEEEeeCC----------CCCC---------------------
Q 032812 15 NHFCPLCYVAGLSFY-TSNKGLSDAFSQY----GQVVEANIVMDR----------VSDK--------------------- 58 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~----g~i~~~~~~~~~----------~~~~--------------------- 58 (133)
...++.|-|.|+.|+ +...+|..+|..| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 346788999999997 6778999888765 488888775533 1121
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHhCCCeeC--CeEEEEEEec
Q 032812 59 ----------------SKGFGFVTFASHEEAEKALSEMNGKTLD--GRVIVVDYAK 96 (133)
Q Consensus 59 ----------------~~g~afv~f~~~~~a~~a~~~l~~~~~~--~~~l~v~~~~ 96 (133)
.--||.|+|.+...|.++....+|..+. +..+.+++..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 1347899999999999999999999986 4466666653
No 149
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=72.01 E-value=13 Score=20.97 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=42.9
Q ss_pred HHHHHHhccCC-CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 33 KGLSDAFSQYG-QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 33 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
++|.+-|...| .+..+.-+....+......-||+.....+... .++=..+.+..++|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 46777777777 67777767666566677888888876655333 3445667788888886654
No 150
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=69.11 E-value=12 Score=21.22 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=42.2
Q ss_pred HHHHHHhccCC-CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 33 KGLSDAFSQYG-QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 33 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
.+|++.|...| .+..+.-+....++.....-+|+.....+... .|+=..+++.++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 45777788887 77788777777666677778888776543333 344456778888888654
No 151
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=66.07 E-value=1.4 Score=30.97 Aligned_cols=75 Identities=23% Similarity=0.254 Sum_probs=56.4
Q ss_pred cCCCCCeEEEcC----CCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 032812 14 RNHFCPLCYVAG----LSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRV 89 (133)
Q Consensus 14 ~~~~~~~l~v~~----lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 89 (133)
+.....+++.|+ |...++++.+...|..-|.+..+++..+. .+..+.++|+.+.-......++...++...--++
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 334456666776 66778888888889999999888887776 5778889999998888888888777665543333
No 152
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=63.90 E-value=12 Score=25.53 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=49.7
Q ss_pred CCeEEEcCCCCCCCHH-----HHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-EEE
Q 032812 18 CPLCYVAGLSFYTSNK-----GLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGR-VIV 91 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~-----~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~-~l~ 91 (133)
-.++.+.++...+..+ ..+.+|..|.+....++.+. .+..-|.|.+++.|..|...+++..+.|. .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3446666776665432 34556666665554444332 24567899999999999999999999887 566
Q ss_pred EEEecC
Q 032812 92 VDYAKP 97 (133)
Q Consensus 92 v~~~~~ 97 (133)
.=++..
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 555543
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=58.24 E-value=1.2 Score=33.87 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=49.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG 87 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 87 (133)
.+++++++|+..+...++.+.|..+|.+....+- .+....++-++|........|+. ++|..+.-
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKR 215 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhh
Confidence 3778999999999999999999999998776653 23334456688988888888775 57766553
No 154
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.71 E-value=39 Score=24.91 Aligned_cols=79 Identities=10% Similarity=0.188 Sum_probs=55.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCC-------CCCCcceEEEEEeCCHHHHHHHHHH----hCC--Ce
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDR-------VSDKSKGFGFVTFASHEEAEKALSE----MNG--KT 84 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a~~~----l~~--~~ 84 (133)
.+.|.+.|+..+++--.+..-|..||.|.++.++.+. ...+......+.|-+.+.|...... |.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5677888999888777777888899999999888765 1223346678999998887664432 222 13
Q ss_pred eCCeEEEEEEec
Q 032812 85 LDGRVIVVDYAK 96 (133)
Q Consensus 85 ~~~~~l~v~~~~ 96 (133)
+....|.+.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 556677777654
No 155
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=56.28 E-value=17 Score=26.59 Aligned_cols=34 Identities=32% Similarity=0.282 Sum_probs=24.3
Q ss_pred EEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 63 GFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 63 afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
|||.|.+..+|+.+++.+....- ..+++..|.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc
Confidence 69999999999999986554433 34466666543
No 156
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.51 E-value=40 Score=18.75 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=15.6
Q ss_pred HHHHHHhccCCCeEEEEEee
Q 032812 33 KGLSDAFSQYGQVVEANIVM 52 (133)
Q Consensus 33 ~~l~~~f~~~g~i~~~~~~~ 52 (133)
.+|+++|+..|+|.-+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999996665433
No 157
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=47.90 E-value=27 Score=23.82 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=33.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCC
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDR 54 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~ 54 (133)
......+++.+++..+....+...|..+|.+....+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 3567889999999999999999999999999666655443
No 158
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=47.72 E-value=2.5 Score=33.56 Aligned_cols=73 Identities=12% Similarity=0.010 Sum_probs=52.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRV 89 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 89 (133)
..+.+++.|++++.+-.+|..++..+.-+..+.+..........-..++.|.--.....|+-+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 3467889999999999999999998877766655433222223345678887777777777788887766543
No 159
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=47.53 E-value=41 Score=21.10 Aligned_cols=37 Identities=22% Similarity=0.459 Sum_probs=21.9
Q ss_pred CHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCH
Q 032812 31 SNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASH 70 (133)
Q Consensus 31 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~ 70 (133)
+.+.|.+.|+.|..+. +...... ..++|++.|.|..-
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKD 66 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SS
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCC
Confidence 4478999999998775 4333443 35789999999774
No 160
>PRK11901 hypothetical protein; Reviewed
Probab=46.49 E-value=92 Score=23.37 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=39.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceE--EEEEeCCHHHHHHHHHHhC
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGF--GFVTFASHEEAEKALSEMN 81 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~--afv~f~~~~~a~~a~~~l~ 81 (133)
....+|.|..+. .++.|..|.+..+ +..+.++....+|+ .+| -+-.|.+.++|..|+..|-
T Consensus 243 ~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 243 ASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCC
Confidence 455677776644 6788888888776 33455554443343 233 3356899999999998875
No 161
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.26 E-value=4.8 Score=31.22 Aligned_cols=76 Identities=4% Similarity=-0.193 Sum_probs=54.7
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 21 CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 21 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
.++..+|...+..++.=.|..||-|..+.+.+....+...-.+|+.... ..++.++.-+--..+.+..+++..+..
T Consensus 6 ~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 6 KSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3456677788888998889999999988888777677777888887654 445555555444555667777776653
No 162
>PRK10905 cell division protein DamX; Validated
Probab=42.49 E-value=1.3e+02 Score=22.61 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=39.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCc-ceEEEEEeCCHHHHHHHHHHhC
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKS-KGFGFVTFASHEEAEKALSEMN 81 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~ 81 (133)
....+|.|+.+. +.+.+.+|..+.|- ....+.....+|+. --.-+-.|.+.++|.+|+..|-
T Consensus 245 a~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 245 SSHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CCceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCC
Confidence 455777777666 66888888877753 33333333323431 1224457899999999998875
No 163
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=41.08 E-value=19 Score=21.54 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=20.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhc
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFS 40 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~ 40 (133)
-..++|.+.|+|....++++++.+.
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4568899999999999998876554
No 164
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.57 E-value=74 Score=25.19 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCC---HHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 032812 18 CPLCYVAGLSFYTS---NKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVI 90 (133)
Q Consensus 18 ~~~l~v~~lp~~~~---~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 90 (133)
..-=.||||+.-.. ...+.++-+.||.+-.+.+-.. -.|...+.+.|+.++.. |+..+.++..
T Consensus 32 ~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 32 PPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 33345788765433 3566667778999998777332 37888899999999964 7888877664
No 165
>PF14893 PNMA: PNMA
Probab=34.42 E-value=32 Score=25.83 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=22.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQ 41 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~ 41 (133)
+..+.+.|.++|.++.+++|++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 56688999999999999999888763
No 166
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=33.31 E-value=37 Score=24.97 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=25.2
Q ss_pred CCeEEEcCCCCC------------CCHHHHHHHhccCCCeEEEEEe
Q 032812 18 CPLCYVAGLSFY------------TSNKGLSDAFSQYGQVVEANIV 51 (133)
Q Consensus 18 ~~~l~v~~lp~~------------~~~~~l~~~f~~~g~i~~~~~~ 51 (133)
..+||+.++|.. .+++-|...|..||.|..+.+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 356777777753 3567889999999999877653
No 167
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=32.61 E-value=69 Score=19.64 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=18.2
Q ss_pred cceEEEEEeCCHHHHHHHHHHh
Q 032812 59 SKGFGFVTFASHEEAEKALSEM 80 (133)
Q Consensus 59 ~~g~afv~f~~~~~a~~a~~~l 80 (133)
-.-+++++|.+.+...++..++
T Consensus 65 ~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 65 EVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEEcCchhHHHHHHHHh
Confidence 4568899999999999888764
No 168
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=32.50 E-value=1.1e+02 Score=18.04 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=39.2
Q ss_pred EEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 032812 22 YVAGLSFYTSNKGLSDAFSQ-YG-QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80 (133)
Q Consensus 22 ~v~~lp~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 80 (133)
|.--....++-.+|++.++. || .+..+.....+ . ...=|+|.+.....|......+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhh
Confidence 33346788899999998885 77 67777654443 2 2234999999888888776544
No 169
>PF13773 DUF4170: Domain of unknown function (DUF4170)
Probab=31.35 E-value=62 Score=18.38 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=22.2
Q ss_pred EEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 64 FVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 64 fv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
.-.|.+.++|.+|.+..-+..+++..++
T Consensus 29 VG~fp~y~~A~~aWrakAq~TVDnA~mR 56 (69)
T PF13773_consen 29 VGIFPDYASAYAAWRAKAQRTVDNAHMR 56 (69)
T ss_pred EecCCChHHHHHHHHHHHhCchhcceee
Confidence 4568899999999999888888875443
No 170
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.76 E-value=1.2e+02 Score=17.56 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=39.3
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 032812 21 CYVAGLSFYTSNKGLSDAFSQ-YG-QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80 (133)
Q Consensus 21 l~v~~lp~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 80 (133)
.|+-.++..++-.+|+..++. |+ .+..+.....+ . ...=|||.+..-..|......+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHhh
Confidence 344457888999999988885 67 66777554433 2 2334999998888887766544
No 171
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.11 E-value=53 Score=23.52 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=27.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEA 48 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~ 48 (133)
.....+|+-|+|..++++.+.++....|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 467889999999999999999999988855443
No 172
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=26.84 E-value=89 Score=19.27 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=16.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhc
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFS 40 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~ 40 (133)
..++..++++.|| +.++++.|+.
T Consensus 61 ekeg~~i~~g~lP---t~~eVe~Fl~ 83 (105)
T PF09702_consen 61 EKEGNYIIVGYLP---TDEEVEDFLD 83 (105)
T ss_pred cCCCCEEecCCCC---ChHHHHHHHH
Confidence 4567889999999 5666666654
No 173
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=26.56 E-value=1.1e+02 Score=23.48 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=45.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCe-EEEEEeeCCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQV-VEANIVMDRVS--DKSKGFGFVTFASHEEAEKALSEMNGKTLD 86 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 86 (133)
...+.|.+||+..+..++.+....+-.- ....+.....+ ....+.|+|.|..+++........+|+.+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4567788999999998888777765422 11222211101 012566899999999988888888887654
No 174
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.44 E-value=1.1e+02 Score=17.73 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=21.3
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCCe
Q 032812 59 SKGFGFVTFASHEEAEKALSEMNGKT 84 (133)
Q Consensus 59 ~~g~afv~f~~~~~a~~a~~~l~~~~ 84 (133)
-+|+-||+=.+..++..|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 67999999999999999997766543
No 175
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=25.97 E-value=1.1e+02 Score=20.97 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=34.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCC--CcceEEEEEeCCHHHHHHHHHH
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSD--KSKGFGFVTFASHEEAEKALSE 79 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~ 79 (133)
+++|.. +.+...++|..+.. |.+..+..-++. .+ ..+|-.||.|...+.|.++++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 445543 22223334443333 677777654443 33 4578899999999999997754
No 176
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.30 E-value=1.3e+02 Score=16.71 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.0
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeeCC
Q 032812 62 FGFVTFASHEEAEKALSEMNGKTLDG 87 (133)
Q Consensus 62 ~afv~f~~~~~a~~a~~~l~~~~~~~ 87 (133)
..++.|.+..+|.++-+.|....+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 57899999999999988887655543
No 177
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=24.43 E-value=1.6e+02 Score=21.34 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=24.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEE
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANI 50 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~ 50 (133)
.....|+|||++++..-+..++...-.+....+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 345668999999999999999886555534433
No 178
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.32 E-value=1.3e+02 Score=16.90 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=22.1
Q ss_pred HHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEE
Q 032812 32 NKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFV 65 (133)
Q Consensus 32 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv 65 (133)
+.+|...|-.-..+.++.+...+. ..+|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKr--i~~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKR--IRKGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEe--eeCCceeE
Confidence 456777787778899998887653 34455555
No 179
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.86 E-value=43 Score=25.86 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=43.0
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHhcc--CCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHH
Q 032812 19 PLCYVAGLSFYTSN--------KGLSDAFSQ--YGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKAL 77 (133)
Q Consensus 19 ~~l~v~~lp~~~~~--------~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 77 (133)
+.+|+.++...... +++..+|.. .+.+..+..-++......+|..|++|.....+++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 45566555554333 488888887 566777777666656667888999999999999976
No 180
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=22.54 E-value=4.2e+02 Score=21.80 Aligned_cols=61 Identities=5% Similarity=0.080 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHhccCCCe-----EEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 27 SFYTSNKGLSDAFSQYGQV-----VEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 27 p~~~~~~~l~~~f~~~g~i-----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
...++..+|-.++..-+.| -.+.+.. .+.||+... ..+...+..|++..+.|+.+.|+.+.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 3456777776666554434 2344422 367888874 56788888999999999999999874
No 181
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=22.35 E-value=31 Score=19.43 Aligned_cols=23 Identities=0% Similarity=-0.195 Sum_probs=16.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHH
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDA 38 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~ 38 (133)
..++.+|||++|..+-.+.-..+
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~ 47 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSW 47 (67)
T ss_pred HcCceEEECCCChHHHHcCcchH
Confidence 35789999999987765533333
No 182
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=21.42 E-value=96 Score=22.07 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=23.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhc--cCCCeEEE
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFS--QYGQVVEA 48 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~--~~g~i~~~ 48 (133)
...+.|+|||++.+..-|..++. .+|....+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~ 129 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMV 129 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceE
Confidence 45678899999999998888886 45544333
Done!