Query 032812
Match_columns 133
No_of_seqs 104 out of 1482
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-22 3.6E-27 124.4 11.8 81 17-97 18-98 (99)
2 2dgo_A Cytotoxic granule-assoc 99.9 8.2E-21 2.8E-25 118.5 14.7 88 14-101 11-98 (115)
3 3s8s_A Histone-lysine N-methyl 99.9 3.1E-21 1E-25 120.0 12.6 84 15-98 3-86 (110)
4 1whw_A Hypothetical protein ri 99.9 3.5E-21 1.2E-25 117.2 12.1 87 15-101 5-91 (99)
5 1u6f_A Tcubp1, RNA-binding pro 99.9 4.6E-21 1.6E-25 123.4 13.0 89 13-101 37-125 (139)
6 2dnz_A Probable RNA-binding pr 99.9 5.3E-21 1.8E-25 115.5 12.5 86 16-101 3-88 (95)
7 2cpz_A CUG triplet repeat RNA- 99.9 5.2E-21 1.8E-25 119.5 12.6 87 15-101 22-108 (115)
8 3md1_A Nuclear and cytoplasmic 99.9 7.2E-21 2.5E-25 112.2 12.3 81 19-99 2-82 (83)
9 3bs9_A Nucleolysin TIA-1 isofo 99.9 5.1E-21 1.7E-25 113.8 11.7 83 16-98 4-86 (87)
10 2cq0_A Eukaryotic translation 99.9 6E-21 2.1E-25 117.0 12.4 87 15-101 12-98 (103)
11 2dgs_A DAZ-associated protein 99.9 6.8E-21 2.3E-25 116.0 12.3 88 14-102 6-93 (99)
12 2cqb_A Peptidyl-prolyl CIS-tra 99.9 3.6E-21 1.2E-25 117.8 10.9 87 15-101 9-95 (102)
13 2fy1_A RNA-binding motif prote 99.9 7.2E-21 2.4E-25 119.3 12.1 86 15-101 4-89 (116)
14 1x4h_A RNA-binding protein 28; 99.9 8.8E-21 3E-25 117.6 12.2 88 13-100 10-103 (111)
15 1x5u_A Splicing factor 3B subu 99.9 6.1E-21 2.1E-25 117.3 11.2 88 13-100 10-97 (105)
16 1x5s_A Cold-inducible RNA-bind 99.9 5E-21 1.7E-25 117.1 10.7 88 14-101 8-95 (102)
17 1x5t_A Splicing factor 3B subu 99.9 6.1E-21 2.1E-25 115.5 10.8 86 16-101 3-89 (96)
18 2do0_A HnRNP M, heterogeneous 99.9 4.5E-20 1.5E-24 115.0 15.0 85 14-99 11-95 (114)
19 2lxi_A RNA-binding protein 10; 99.9 7.9E-22 2.7E-26 118.7 6.6 83 18-100 1-85 (91)
20 2do4_A Squamous cell carcinoma 99.9 1.7E-20 6E-25 114.3 12.7 86 13-99 12-97 (100)
21 2cpf_A RNA binding motif prote 99.9 1.1E-20 3.6E-25 114.9 11.5 85 16-100 3-90 (98)
22 3mdf_A Peptidyl-prolyl CIS-tra 99.9 9.3E-21 3.2E-25 112.2 10.8 82 15-96 4-85 (85)
23 2cpe_A RNA-binding protein EWS 99.9 1E-20 3.5E-25 117.8 11.6 90 12-101 9-106 (113)
24 2la6_A RNA-binding protein FUS 99.9 1E-20 3.5E-25 115.2 11.1 88 9-96 4-99 (99)
25 2cqc_A Arginine/serine-rich sp 99.9 1.4E-20 4.8E-25 113.6 11.4 85 13-97 10-94 (95)
26 2d9p_A Polyadenylate-binding p 99.9 2E-20 6.9E-25 114.6 12.2 86 14-101 11-96 (103)
27 3ex7_B RNA-binding protein 8A; 99.9 4.2E-21 1.4E-25 121.7 9.4 88 14-101 18-105 (126)
28 2x1f_A MRNA 3'-END-processing 99.9 1.5E-20 5.1E-25 113.9 11.3 83 17-99 1-83 (96)
29 2dnm_A SRP46 splicing factor; 99.9 7.8E-21 2.7E-25 116.5 10.1 85 15-99 10-94 (103)
30 2cph_A RNA binding motif prote 99.8 1.9E-20 6.6E-25 115.3 11.7 87 14-100 11-99 (107)
31 2dng_A Eukaryotic translation 99.8 4E-20 1.4E-24 113.3 12.8 85 15-101 12-96 (103)
32 2dnh_A Bruno-like 5, RNA bindi 99.8 3.5E-20 1.2E-24 113.9 12.5 87 14-101 11-100 (105)
33 2cqd_A RNA-binding region cont 99.8 4.7E-20 1.6E-24 115.3 13.1 87 13-100 12-98 (116)
34 2e5h_A Zinc finger CCHC-type a 99.8 1.8E-20 6.3E-25 112.9 10.8 84 13-96 11-94 (94)
35 1p27_B RNA-binding protein 8A; 99.8 1.8E-20 6.2E-25 115.3 10.9 84 16-99 21-104 (106)
36 1wi8_A EIF-4B, eukaryotic tran 99.8 2.6E-20 8.9E-25 114.4 11.5 86 15-102 12-98 (104)
37 2jrs_A RNA-binding protein 39; 99.8 2.2E-20 7.5E-25 115.7 10.4 87 13-99 21-107 (108)
38 2cq3_A RNA-binding protein 9; 99.8 1.2E-19 4.2E-24 111.1 13.7 86 13-100 10-95 (103)
39 2dgp_A Bruno-like 4, RNA bindi 99.8 1.8E-20 6.1E-25 115.4 9.9 87 14-100 9-98 (106)
40 4f25_A Polyadenylate-binding p 99.8 4.2E-20 1.4E-24 115.6 11.7 81 18-100 5-85 (115)
41 1oo0_B CG8781-PA, drosophila Y 99.8 2.9E-20 9.9E-25 115.2 10.7 85 15-99 23-107 (110)
42 3p5t_L Cleavage and polyadenyl 99.8 3.8E-21 1.3E-25 115.3 6.4 81 19-99 2-84 (90)
43 2dhg_A TRNA selenocysteine ass 99.8 3.8E-20 1.3E-24 113.5 10.9 86 15-101 6-93 (104)
44 2lkz_A RNA-binding protein 5; 99.8 1E-20 3.5E-25 114.7 8.1 83 15-97 6-94 (95)
45 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.2E-19 4.1E-24 111.1 13.0 86 14-101 11-96 (103)
46 2div_A TRNA selenocysteine ass 99.8 3.5E-20 1.2E-24 112.8 10.2 85 14-98 5-94 (99)
47 2dgx_A KIAA0430 protein; RRM d 99.8 5.3E-20 1.8E-24 111.6 10.8 83 15-100 6-92 (96)
48 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.3E-19 4.5E-24 118.7 13.5 85 16-100 37-121 (156)
49 4a8x_A RNA-binding protein wit 99.8 5.7E-20 1.9E-24 109.4 10.5 83 17-99 3-86 (88)
50 3ulh_A THO complex subunit 4; 99.8 1.2E-19 4.1E-24 111.8 12.1 82 14-96 25-106 (107)
51 2ywk_A Putative RNA-binding pr 99.8 8.5E-20 2.9E-24 110.2 10.8 83 14-97 12-94 (95)
52 2dh8_A DAZ-associated protein 99.8 4.5E-20 1.6E-24 113.4 9.7 86 14-100 12-97 (105)
53 2dgv_A HnRNP M, heterogeneous 99.8 1.1E-19 3.9E-24 109.0 11.1 83 15-99 5-87 (92)
54 3ucg_A Polyadenylate-binding p 99.8 1.2E-19 4.1E-24 108.2 11.0 81 17-98 5-85 (89)
55 2kxn_B Transformer-2 protein h 99.8 3.7E-20 1.3E-24 118.1 9.2 86 14-99 42-127 (129)
56 2cqg_A TDP-43, TAR DNA-binding 99.8 4E-19 1.4E-23 108.8 13.3 84 15-100 12-95 (103)
57 3n9u_C Cleavage and polyadenyl 99.8 1.1E-19 3.9E-24 119.3 11.4 81 17-97 54-136 (156)
58 2cqp_A RNA-binding protein 12; 99.8 5E-20 1.7E-24 111.8 8.9 85 15-99 12-96 (98)
59 1x4a_A Splicing factor, argini 99.8 3.5E-19 1.2E-23 110.1 12.7 82 15-99 19-100 (109)
60 3s7r_A Heterogeneous nuclear r 99.8 2.2E-19 7.7E-24 106.7 11.4 82 13-95 6-87 (87)
61 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.5E-19 5.1E-24 119.6 11.6 85 16-100 70-154 (165)
62 2khc_A Testis-specific RNP-typ 99.8 5.6E-20 1.9E-24 115.2 8.9 81 16-96 38-118 (118)
63 3ns6_A Eukaryotic translation 99.8 1.5E-20 5E-25 114.9 6.1 83 16-98 4-93 (100)
64 1p1t_A Cleavage stimulation fa 99.8 1.2E-20 4E-25 115.8 5.3 84 17-100 7-90 (104)
65 2kn4_A Immunoglobulin G-bindin 99.8 1.4E-19 4.7E-24 118.7 10.8 84 16-99 68-151 (158)
66 1x4c_A Splicing factor, argini 99.8 5.3E-19 1.8E-23 109.3 12.8 78 15-99 12-94 (108)
67 1x4b_A Heterogeneous nuclear r 99.8 1.9E-19 6.5E-24 112.5 10.9 84 17-101 26-109 (116)
68 2dis_A Unnamed protein product 99.8 1.8E-19 6.1E-24 111.4 10.6 86 15-100 5-94 (109)
69 2rs2_A Musashi-1, RNA-binding 99.8 2E-19 7E-24 111.4 10.6 87 13-100 20-106 (109)
70 2cpi_A CCR4-NOT transcription 99.8 2.4E-19 8.2E-24 111.4 10.8 84 16-99 13-102 (111)
71 2dgw_A Probable RNA-binding pr 99.8 6.1E-19 2.1E-23 105.7 12.1 83 14-99 6-88 (91)
72 2jwn_A Embryonic polyadenylate 99.8 3.5E-19 1.2E-23 112.5 11.5 81 17-98 35-115 (124)
73 1sjq_A Polypyrimidine tract-bi 99.8 1.8E-19 6.1E-24 110.8 9.6 81 14-100 12-94 (105)
74 2ek1_A RNA-binding protein 12; 99.8 8.2E-20 2.8E-24 110.2 7.9 82 16-97 13-94 (95)
75 2kt5_A RNA and export factor-b 99.8 5.5E-19 1.9E-23 111.7 12.0 84 15-99 32-115 (124)
76 2dnq_A RNA-binding protein 4B; 99.8 4.6E-19 1.6E-23 106.1 11.1 79 15-101 5-83 (90)
77 3r27_A HnRNP L, heterogeneous 99.8 3.6E-19 1.2E-23 108.5 10.6 79 15-99 18-98 (100)
78 2fc9_A NCL protein; structure 99.8 4.7E-19 1.6E-23 108.1 11.3 83 14-100 11-93 (101)
79 2m2b_A RNA-binding protein 10; 99.8 7E-20 2.4E-24 116.9 7.7 84 15-99 20-109 (131)
80 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.3E-20 1.8E-24 112.4 6.8 85 13-99 14-99 (100)
81 2fc8_A NCL protein; structure 99.8 8E-19 2.7E-23 107.2 12.1 84 15-101 12-95 (102)
82 2err_A Ataxin-2-binding protei 99.8 2.8E-19 9.5E-24 110.8 9.7 85 12-98 23-107 (109)
83 1x4e_A RNA binding motif, sing 99.8 2.8E-20 9.6E-25 110.2 4.9 81 15-95 2-82 (85)
84 2cq4_A RNA binding motif prote 99.8 4.4E-20 1.5E-24 115.1 6.0 82 17-99 24-105 (114)
85 1x4d_A Matrin 3; structural ge 99.8 2.5E-19 8.5E-24 109.8 9.3 80 15-100 12-94 (102)
86 2dgt_A RNA-binding protein 30; 99.8 1.2E-18 3.9E-23 104.7 11.9 82 13-102 5-86 (92)
87 1s79_A Lupus LA protein; RRM, 99.8 1.9E-19 6.4E-24 110.6 8.3 80 15-96 8-87 (103)
88 2dgu_A Heterogeneous nuclear r 99.8 1.6E-18 5.4E-23 106.2 12.3 79 15-101 8-86 (103)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.7E-19 1.6E-23 113.8 10.2 81 15-95 60-140 (140)
90 2cq1_A PTB-like protein L; RRM 99.8 1.8E-18 6E-23 105.9 12.2 80 15-100 12-93 (101)
91 1x4g_A Nucleolysin TIAR; struc 99.8 1.1E-18 3.8E-23 107.9 11.4 82 14-101 21-102 (109)
92 2lea_A Serine/arginine-rich sp 99.8 1.1E-19 3.9E-24 116.6 6.8 84 16-99 45-128 (135)
93 1x5o_A RNA binding motif, sing 99.8 1.1E-18 3.7E-23 108.7 11.1 83 15-98 22-112 (114)
94 2mss_A Protein (musashi1); RNA 99.8 1.3E-19 4.3E-24 104.9 6.3 75 20-95 1-75 (75)
95 1wez_A HnRNP H', FTP-3, hetero 99.8 8.8E-19 3E-23 107.4 10.1 83 14-99 11-93 (102)
96 2ad9_A Polypyrimidine tract-bi 99.8 1.1E-18 3.8E-23 109.6 10.3 81 15-101 28-110 (119)
97 1wex_A Hypothetical protein (r 99.8 1.6E-18 5.5E-23 106.6 10.9 81 15-101 12-94 (104)
98 2lcw_A RNA-binding protein FUS 99.7 6.4E-21 2.2E-25 119.3 0.0 90 15-104 4-101 (116)
99 2jvo_A Nucleolar protein 3; nu 99.8 1.3E-18 4.5E-23 107.6 10.4 79 13-99 26-104 (108)
100 1wg5_A Heterogeneous nuclear r 99.8 1.4E-18 4.7E-23 106.8 10.2 83 15-99 12-95 (104)
101 2ki2_A SS-DNA binding protein 99.8 5.7E-20 2E-24 110.0 3.8 80 19-99 2-81 (90)
102 1why_A Hypothetical protein ri 99.8 1.7E-18 5.7E-23 105.0 10.4 80 14-99 13-94 (97)
103 2cpx_A Hypothetical protein FL 99.8 1.5E-19 5.1E-24 112.7 5.6 83 15-101 22-108 (115)
104 2jvr_A Nucleolar protein 3; RN 99.8 5.5E-19 1.9E-23 109.9 8.2 81 14-98 24-105 (111)
105 2cpj_A Non-POU domain-containi 99.8 1.9E-18 6.5E-23 105.1 10.4 81 15-101 12-92 (99)
106 2hvz_A Splicing factor, argini 99.8 1E-18 3.6E-23 106.6 9.3 77 19-100 1-77 (101)
107 2db1_A Heterogeneous nuclear r 99.8 1.1E-18 3.9E-23 109.5 9.6 82 15-98 14-98 (118)
108 2nlw_A Eukaryotic translation 99.8 8.5E-19 2.9E-23 107.9 8.9 83 15-99 12-101 (105)
109 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.4E-19 8.3E-24 104.1 6.0 76 19-95 1-76 (77)
110 2dnp_A RNA-binding protein 14; 99.8 3.3E-18 1.1E-22 102.3 11.0 78 14-99 5-82 (90)
111 2cqh_A IGF-II mRNA-binding pro 99.8 1.3E-18 4.5E-23 104.6 9.2 80 15-101 5-86 (93)
112 2hgl_A HNRPF protein, heteroge 99.8 7.1E-19 2.4E-23 113.0 8.4 81 15-97 41-124 (136)
113 3q2s_C Cleavage and polyadenyl 99.8 7.2E-19 2.5E-23 122.0 8.9 80 17-96 67-148 (229)
114 1wf1_A RNA-binding protein RAL 99.8 3.1E-18 1.1E-22 106.0 10.7 76 16-99 25-101 (110)
115 4f02_A Polyadenylate-binding p 99.8 4.2E-18 1.4E-22 116.6 12.3 84 15-98 12-95 (213)
116 2cpd_A Apobec-1 stimulating pr 99.8 8.5E-18 2.9E-22 102.2 12.4 77 15-99 12-90 (99)
117 2ytc_A PRE-mRNA-splicing facto 99.8 2.6E-18 8.8E-23 101.6 9.7 78 13-96 7-85 (85)
118 2a3j_A U1 small nuclear ribonu 99.8 1.6E-18 5.4E-23 110.2 9.3 82 15-99 26-111 (127)
119 2xnq_A Nuclear polyadenylated 99.8 5.7E-18 2E-22 102.8 11.3 77 14-98 18-95 (97)
120 2cpy_A RNA-binding protein 12; 99.8 1.1E-18 3.9E-23 108.8 8.1 83 15-99 12-95 (114)
121 1nu4_A U1A RNA binding domain; 99.8 1.4E-18 4.7E-23 105.2 8.2 82 15-99 5-90 (97)
122 3pgw_S U1-70K; protein-RNA com 99.8 6.9E-18 2.4E-22 126.7 13.5 84 16-99 100-183 (437)
123 2e5g_A U6 snRNA-specific termi 99.8 6.3E-18 2.1E-22 101.9 10.9 78 16-99 6-83 (94)
124 2la4_A Nuclear and cytoplasmic 99.8 1.9E-18 6.4E-23 105.4 8.6 78 15-98 24-101 (101)
125 1fj7_A Nucleolin RBD1, protein 99.8 1.1E-19 3.9E-24 110.9 3.1 84 15-100 14-97 (101)
126 2e5j_A Methenyltetrahydrofolat 99.8 2.6E-18 8.9E-23 104.1 9.0 80 15-99 16-95 (97)
127 2kvi_A Nuclear polyadenylated 99.8 2.2E-18 7.4E-23 104.4 8.3 78 14-99 6-84 (96)
128 2wbr_A GW182, gawky, LD47780P; 99.8 3.5E-18 1.2E-22 101.2 8.7 74 17-96 6-79 (89)
129 1wel_A RNA-binding protein 12; 99.8 6.2E-19 2.1E-23 111.5 5.9 83 15-98 22-104 (124)
130 1fxl_A Paraneoplastic encephal 99.8 1.4E-17 4.9E-22 109.0 12.5 82 18-99 2-83 (167)
131 3lqv_A PRE-mRNA branch site pr 99.8 6.2E-18 2.1E-22 105.4 10.0 81 15-98 5-85 (115)
132 1fjc_A Nucleolin RBD2, protein 99.8 2.4E-18 8.2E-23 104.0 7.8 80 15-99 13-92 (96)
133 1b7f_A Protein (SXL-lethal pro 99.8 1.1E-17 3.7E-22 109.8 11.5 84 17-100 2-85 (168)
134 1x4f_A Matrin 3; structural ge 99.8 2.4E-18 8.1E-23 107.0 7.8 81 15-101 22-105 (112)
135 3md3_A Nuclear and cytoplasmic 99.8 1.6E-17 5.5E-22 108.6 12.2 83 15-97 84-166 (166)
136 1l3k_A Heterogeneous nuclear r 99.8 1.1E-17 3.7E-22 112.5 11.6 88 17-105 103-190 (196)
137 2cq2_A Hypothetical protein LO 99.8 7.7E-18 2.6E-22 104.9 9.7 83 13-101 20-109 (114)
138 2krb_A Eukaryotic translation 99.8 1.2E-18 4.1E-23 102.3 5.7 73 18-92 1-80 (81)
139 2qfj_A FBP-interacting repress 99.7 2.2E-17 7.6E-22 112.5 12.4 84 16-99 123-206 (216)
140 1iqt_A AUF1, heterogeneous nuc 99.7 8.3E-19 2.9E-23 101.4 4.5 75 20-95 1-75 (75)
141 2xs2_A Deleted in azoospermia- 99.7 2.5E-18 8.6E-23 105.0 6.6 81 16-99 7-87 (102)
142 2lmi_A GRSF-1, G-rich sequence 99.7 1.2E-18 4E-23 107.6 5.1 83 14-98 7-92 (107)
143 2dnn_A RNA-binding protein 12; 99.7 1.5E-17 5.1E-22 103.1 9.8 79 17-98 15-93 (109)
144 2e44_A Insulin-like growth fac 99.7 8.4E-18 2.9E-22 101.6 8.5 80 15-98 12-92 (96)
145 2f3j_A RNA and export factor b 99.7 6.9E-18 2.4E-22 112.9 8.8 82 16-98 86-167 (177)
146 3egn_A RNA-binding protein 40; 99.7 1.8E-18 6.1E-23 111.8 5.6 84 15-99 42-131 (143)
147 2i2y_A Fusion protein consists 99.7 9.7E-18 3.3E-22 109.1 9.0 79 15-98 70-148 (150)
148 1whx_A Hypothetical protein ri 99.7 1.3E-17 4.3E-22 103.7 8.9 76 17-98 9-84 (111)
149 2yh0_A Splicing factor U2AF 65 99.7 3.4E-17 1.2E-21 110.2 11.7 84 16-99 112-195 (198)
150 2hgn_A Heterogeneous nuclear r 99.7 1.2E-18 4E-23 112.4 4.2 83 15-100 43-125 (139)
151 1l3k_A Heterogeneous nuclear r 99.7 2.8E-17 9.7E-22 110.4 11.1 86 13-99 8-93 (196)
152 1wg1_A KIAA1579 protein, homol 99.7 4.7E-17 1.6E-21 96.9 10.7 77 16-99 3-79 (88)
153 3beg_B Splicing factor, argini 99.7 1.3E-17 4.4E-22 104.2 8.5 76 16-98 14-94 (115)
154 1x5p_A Negative elongation fac 99.7 1E-16 3.5E-21 97.1 12.3 78 15-100 12-89 (97)
155 2g4b_A Splicing factor U2AF 65 99.7 4.4E-17 1.5E-21 107.4 11.1 80 16-95 92-171 (172)
156 2e5i_A Heterogeneous nuclear r 99.7 8.2E-17 2.8E-21 101.8 11.6 79 15-99 20-103 (124)
157 3md3_A Nuclear and cytoplasmic 99.7 7.3E-17 2.5E-21 105.5 11.5 80 19-99 1-80 (166)
158 2dha_A FLJ20171 protein; RRM d 99.7 1.2E-17 4E-22 105.6 7.4 81 15-97 20-104 (123)
159 3zzy_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 101.9 11.4 78 16-98 26-106 (130)
160 1sjr_A Polypyrimidine tract-bi 99.7 4.6E-17 1.6E-21 107.1 9.8 80 16-99 44-125 (164)
161 2diu_A KIAA0430 protein; struc 99.7 8.5E-17 2.9E-21 96.2 9.9 76 16-101 6-87 (96)
162 4f02_A Polyadenylate-binding p 99.7 7.1E-17 2.4E-21 110.5 10.8 80 17-98 102-181 (213)
163 2j8a_A Histone-lysine N-methyl 99.7 3.5E-17 1.2E-21 103.2 8.3 79 19-97 3-95 (136)
164 2cjk_A Nuclear polyadenylated 99.7 1.9E-17 6.4E-22 108.7 7.3 81 17-98 86-166 (167)
165 2hgm_A HNRPF protein, heteroge 99.7 2.2E-17 7.4E-22 104.7 7.0 80 15-97 39-120 (126)
166 3tyt_A Heterogeneous nuclear r 99.7 1.5E-16 5.2E-21 108.6 10.6 78 16-98 2-80 (205)
167 1b7f_A Protein (SXL-lethal pro 99.7 2.2E-16 7.6E-21 103.5 11.0 80 16-95 87-168 (168)
168 3d2w_A TAR DNA-binding protein 99.7 1.9E-16 6.5E-21 94.6 9.4 77 14-99 7-85 (89)
169 2qfj_A FBP-interacting repress 99.7 1.3E-16 4.5E-21 108.7 9.8 82 17-98 27-108 (216)
170 1wf0_A TDP-43, TAR DNA-binding 99.7 5.6E-17 1.9E-21 96.5 6.8 79 16-101 3-81 (88)
171 1fxl_A Paraneoplastic encephal 99.7 4.1E-16 1.4E-20 102.0 10.7 80 16-95 86-167 (167)
172 3nmr_A Cugbp ELAV-like family 99.7 3.4E-16 1.2E-20 103.2 10.3 79 17-96 94-175 (175)
173 3nmr_A Cugbp ELAV-like family 99.7 3.3E-16 1.1E-20 103.3 9.8 83 16-98 1-88 (175)
174 3pgw_A U1-A; protein-RNA compl 99.7 5.8E-16 2E-20 109.7 11.6 83 14-99 5-91 (282)
175 2hzc_A Splicing factor U2AF 65 99.7 2.6E-16 8.9E-21 93.2 8.2 72 16-94 4-86 (87)
176 2dnl_A Cytoplasmic polyadenyla 99.7 5.8E-16 2E-20 96.4 10.1 78 15-95 5-85 (114)
177 2bz2_A Negative elongation fac 99.7 3.8E-16 1.3E-20 98.4 9.3 77 15-99 36-112 (121)
178 2pe8_A Splicing factor 45; RRM 99.7 1.5E-15 5E-20 93.5 11.7 82 16-97 6-93 (105)
179 1fje_B Nucleolin RBD12, protei 99.7 3.4E-16 1.2E-20 103.5 9.2 77 17-98 98-174 (175)
180 2voo_A Lupus LA protein; RNA-b 99.7 1.1E-15 3.7E-20 103.5 11.1 78 18-97 109-186 (193)
181 3smz_A Protein raver-1, ribonu 99.7 2.5E-15 8.5E-20 106.5 12.8 87 13-99 90-176 (284)
182 2ghp_A U4/U6 snRNA-associated 99.6 7.9E-16 2.7E-20 109.5 10.0 82 16-98 208-291 (292)
183 2cjk_A Nuclear polyadenylated 99.6 4.9E-16 1.7E-20 101.9 8.0 80 17-98 2-81 (167)
184 3smz_A Protein raver-1, ribonu 99.6 2.3E-15 7.8E-20 106.7 11.9 83 16-99 182-265 (284)
185 3pgw_A U1-A; protein-RNA compl 99.6 2.9E-15 1E-19 106.1 11.3 77 15-96 204-281 (282)
186 2adc_A Polypyrimidine tract-bi 99.6 2.4E-15 8.2E-20 103.9 10.1 79 15-98 31-110 (229)
187 3u1l_A PRE-mRNA-splicing facto 99.6 1E-15 3.4E-20 106.6 8.0 79 15-99 131-230 (240)
188 2dit_A HIV TAT specific factor 99.6 1.3E-14 4.6E-19 90.0 11.8 84 14-101 11-105 (112)
189 1qm9_A Polypyrimidine tract-bi 99.6 2.9E-15 9.8E-20 101.0 7.5 77 17-98 2-79 (198)
190 2ghp_A U4/U6 snRNA-associated 99.6 7.4E-15 2.5E-19 104.5 9.4 90 10-100 109-199 (292)
191 1fje_B Nucleolin RBD12, protei 99.6 6.3E-16 2.2E-20 102.2 3.6 84 14-99 9-92 (175)
192 3ue2_A Poly(U)-binding-splicin 99.6 1.8E-14 6.1E-19 90.3 9.8 81 17-97 19-108 (118)
193 1qm9_A Polypyrimidine tract-bi 99.6 7.2E-15 2.5E-19 99.0 7.9 78 16-98 118-197 (198)
194 3tyt_A Heterogeneous nuclear r 99.6 7.5E-15 2.6E-19 100.2 8.0 78 16-95 121-204 (205)
195 3sde_A Paraspeckle component 1 99.6 1.7E-14 5.8E-19 101.5 9.7 76 16-97 20-95 (261)
196 2adc_A Polypyrimidine tract-bi 99.6 2.1E-14 7.1E-19 99.2 9.8 78 16-98 149-228 (229)
197 3sde_A Paraspeckle component 1 99.6 3.5E-14 1.2E-18 99.9 11.0 85 13-98 91-179 (261)
198 3v4m_A Splicing factor U2AF 65 99.6 3.1E-14 1.1E-18 87.5 9.2 82 16-97 3-96 (105)
199 1jmt_A Splicing factor U2AF 35 99.6 4.1E-15 1.4E-19 91.3 4.8 72 23-95 20-103 (104)
200 2g4b_A Splicing factor U2AF 65 99.5 3.2E-14 1.1E-18 93.6 9.0 76 17-99 3-89 (172)
201 2yh0_A Splicing factor U2AF 65 99.5 2.2E-13 7.4E-18 91.5 10.8 75 17-98 3-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.7E-12 5.9E-17 79.0 10.9 77 17-100 9-92 (100)
203 3tht_A Alkylated DNA repair pr 99.4 7.1E-13 2.4E-17 96.6 9.1 79 12-96 12-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 7.9E-12 2.7E-16 77.7 9.9 78 16-97 5-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 6.4E-11 2.2E-15 70.2 9.1 75 16-99 5-87 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 4.7E-11 1.6E-15 74.7 8.4 76 14-95 14-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 8.3E-10 2.8E-14 65.7 6.5 73 15-96 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.4E-09 4.8E-14 74.5 8.1 66 31-96 142-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.7 1.1E-07 3.9E-12 57.8 8.9 72 17-94 20-96 (117)
210 1whv_A Poly(A)-specific ribonu 98.1 2.5E-05 8.5E-10 46.5 7.1 56 16-80 14-69 (100)
211 2dhx_A Poly (ADP-ribose) polym 97.9 0.00035 1.2E-08 42.0 9.8 76 15-99 5-85 (104)
212 3ctr_A Poly(A)-specific ribonu 97.8 3.3E-05 1.1E-09 46.1 4.9 55 18-81 6-60 (101)
213 1uw4_A UPF3X; nonsense mediate 97.8 0.00028 9.4E-09 41.7 8.7 78 19-96 2-86 (91)
214 1wey_A Calcipressin 1; structu 97.8 8.4E-05 2.9E-09 44.8 6.2 74 18-97 5-83 (104)
215 1wwh_A Nucleoporin 35, nucleop 97.4 0.0013 4.6E-08 40.5 7.7 72 16-95 22-94 (119)
216 2l08_A Regulator of nonsense t 97.0 0.003 1E-07 37.6 6.1 80 17-96 8-94 (97)
217 3p3d_A Nucleoporin 53; structu 96.3 0.016 5.5E-07 36.3 6.2 77 18-96 7-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 96.0 0.0062 2.1E-07 46.0 3.9 55 18-78 53-107 (464)
219 2kn4_A Immunoglobulin G-bindin 95.4 0.021 7E-07 36.3 4.3 35 48-84 3-37 (158)
220 2i2y_A Fusion protein consists 94.9 0.021 7.3E-07 36.1 3.2 41 56-97 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 93.4 0.35 1.2E-05 36.9 7.7 55 18-81 440-494 (507)
222 2cu1_A Mitogen-activated prote 65.6 18 0.00062 21.3 6.1 65 25-98 23-88 (103)
223 2g0c_A ATP-dependent RNA helic 42.1 40 0.0014 18.0 5.3 59 29-96 12-75 (76)
224 3fut_A Dimethyladenosine trans 27.5 49 0.0017 22.8 3.0 32 18-50 110-141 (271)
225 3uzu_A Ribosomal RNA small sub 24.5 27 0.00093 24.2 1.2 34 19-52 115-148 (279)
226 2lfv_A Protein DAMX; cell divi 29.0 17 0.00059 21.5 0.0 62 17-82 24-86 (106)
227 4e8u_A Putative uncharacterize 20.7 1.8E+02 0.0062 18.8 6.1 37 31-70 34-72 (172)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=124.38 Aligned_cols=81 Identities=32% Similarity=0.545 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
.+++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|+|||+|.+.++|++|+..|||..++|+.|+|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 56899999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred C
Q 032812 97 P 97 (133)
Q Consensus 97 ~ 97 (133)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 2
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=8.2e-21 Score=118.54 Aligned_cols=88 Identities=32% Similarity=0.518 Sum_probs=82.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 032812 94 YAKPKTSF 101 (133)
Q Consensus 94 ~~~~~~~~ 101 (133)
++.++...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876543
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=119.97 Aligned_cols=84 Identities=20% Similarity=0.229 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|.++.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8754
No 4
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=3.5e-21 Score=117.22 Aligned_cols=87 Identities=33% Similarity=0.495 Sum_probs=81.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.+..++.++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876544
No 5
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=4.6e-21 Score=123.41 Aligned_cols=89 Identities=25% Similarity=0.366 Sum_probs=82.8
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||.++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34467799999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 032812 93 DYAKPKTSF 101 (133)
Q Consensus 93 ~~~~~~~~~ 101 (133)
.+++++...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876544
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.3e-21 Score=115.54 Aligned_cols=86 Identities=29% Similarity=0.466 Sum_probs=81.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.+.++|||+|||.++++++|+++|..||.|..+.+..++.++..+|+|||+|.+.++|++|+..||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 56789999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 032812 96 KPKTSF 101 (133)
Q Consensus 96 ~~~~~~ 101 (133)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 7
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=5.2e-21 Score=119.52 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=81.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..||+..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
++++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9876543
No 8
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=7.2e-21 Score=112.18 Aligned_cols=81 Identities=26% Similarity=0.566 Sum_probs=77.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
.+|||+|||.++++++|+++|..||.|..+.++.+..++..+|+|||+|.+.++|++|+..|+|..++|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999889999999999999999999999999999999999999999876
Q ss_pred C
Q 032812 99 T 99 (133)
Q Consensus 99 ~ 99 (133)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=5.1e-21 Score=113.79 Aligned_cols=83 Identities=34% Similarity=0.551 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
++.++|||+|||.++++++|+++|..||.|..+.+..++.++..+|+|||+|.+.++|++|+..|++..++|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCC
Q 032812 96 KPK 98 (133)
Q Consensus 96 ~~~ 98 (133)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 10
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6e-21 Score=116.98 Aligned_cols=87 Identities=28% Similarity=0.468 Sum_probs=81.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 46789999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
+.++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9876543
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=6.8e-21 Score=115.96 Aligned_cols=88 Identities=24% Similarity=0.488 Sum_probs=81.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||.++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+. |++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34578999999999999999999999999999999999998889999999999999999999998 99999999999999
Q ss_pred EecCCCCCC
Q 032812 94 YAKPKTSFR 102 (133)
Q Consensus 94 ~~~~~~~~~ 102 (133)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998765443
No 12
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.6e-21 Score=117.77 Aligned_cols=87 Identities=34% Similarity=0.514 Sum_probs=81.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 46789999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 13
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=7.2e-21 Score=119.28 Aligned_cols=86 Identities=34% Similarity=0.539 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
.++.++|||+|||.++++++|+++|..||.|..+.+..+. ++..+|+|||+|.+.++|++|+..|+|..++|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
++++...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876543
No 14
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=8.8e-21 Score=117.60 Aligned_cols=88 Identities=27% Similarity=0.478 Sum_probs=82.0
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC------CCeeC
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN------GKTLD 86 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------~~~~~ 86 (133)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|.+|+..|+ +..++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678999999999999999999999999999999999998889999999999999999999999999 99999
Q ss_pred CeEEEEEEecCCCC
Q 032812 87 GRVIVVDYAKPKTS 100 (133)
Q Consensus 87 ~~~l~v~~~~~~~~ 100 (133)
|+.|+|.++.++..
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999987643
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.1e-21 Score=117.30 Aligned_cols=88 Identities=33% Similarity=0.449 Sum_probs=82.2
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||+++++++|+++|..||.|..+.+..++.++..+|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567899999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 032812 93 DYAKPKTS 100 (133)
Q Consensus 93 ~~~~~~~~ 100 (133)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987654
No 16
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5e-21 Score=117.09 Aligned_cols=88 Identities=42% Similarity=0.653 Sum_probs=82.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34678999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 032812 94 YAKPKTSF 101 (133)
Q Consensus 94 ~~~~~~~~ 101 (133)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.1e-21 Score=115.47 Aligned_cols=86 Identities=33% Similarity=0.481 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEA-NIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
.+.++|||+|||+++++++|+++|..||.|..+ .++.++.++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 468999999999999999999999999999999 9999877999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876533
No 18
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-20 Score=114.96 Aligned_cols=85 Identities=34% Similarity=0.461 Sum_probs=79.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.|..+.+..++ ++..+++|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34678999999999999999999999999999999999987 68899999999999999999999999999999999999
Q ss_pred EecCCC
Q 032812 94 YAKPKT 99 (133)
Q Consensus 94 ~~~~~~ 99 (133)
+++...
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 997543
No 19
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=7.9e-22 Score=118.69 Aligned_cols=83 Identities=19% Similarity=0.396 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC-CCeeCCeEEEEEEe
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYG-QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN-GKTLDGRVIVVDYA 95 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-~~~~~~~~l~v~~~ 95 (133)
+.+|||+|||+++++++|+++|+.|| .|.++.++.++.++.++|+|||+|.+.++|++|++.++ +..++|+.|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999899999999999999999999998874 56799999999999
Q ss_pred cCCCC
Q 032812 96 KPKTS 100 (133)
Q Consensus 96 ~~~~~ 100 (133)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87653
No 20
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.7e-20 Score=114.34 Aligned_cols=86 Identities=22% Similarity=0.422 Sum_probs=80.6
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||.++++++|+++|..||.|..+.+..+. ++..+|+|||+|.+.++|++|+..|++..++|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 334578999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 032812 93 DYAKPKT 99 (133)
Q Consensus 93 ~~~~~~~ 99 (133)
.+++++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9998764
No 21
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-20 Score=114.87 Aligned_cols=85 Identities=29% Similarity=0.466 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRV---SDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
.+.++|||+|||+++++++|+++|..||.|..+.+..+.. ++..+|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5678999999999999999999999999999999988775 5588999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 032812 93 DYAKPKTS 100 (133)
Q Consensus 93 ~~~~~~~~ 100 (133)
.++.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987553
No 22
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=9.3e-21 Score=112.18 Aligned_cols=82 Identities=35% Similarity=0.541 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.++.+..++..+|+|||+|.+.++|++|+..|||..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999887999999999999999999999999999999999999998
Q ss_pred ec
Q 032812 95 AK 96 (133)
Q Consensus 95 ~~ 96 (133)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 23
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=117.75 Aligned_cols=90 Identities=27% Similarity=0.348 Sum_probs=82.5
Q ss_pred cccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeE--------EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 032812 12 ICRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVV--------EANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGK 83 (133)
Q Consensus 12 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 83 (133)
.....+.++|||+|||+++++++|+++|..||.|. .+.+..++.++..+|+|||+|.+.++|++|+..|++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34456889999999999999999999999999998 6999998889999999999999999999999999999
Q ss_pred eeCCeEEEEEEecCCCCC
Q 032812 84 TLDGRVIVVDYAKPKTSF 101 (133)
Q Consensus 84 ~~~~~~l~v~~~~~~~~~ 101 (133)
.+.|+.|+|.+++++...
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999876543
No 24
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=115.23 Aligned_cols=88 Identities=27% Similarity=0.354 Sum_probs=81.4
Q ss_pred ceecccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 032812 9 HVYICRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVE--------ANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80 (133)
Q Consensus 9 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 80 (133)
..........++|||+|||+++++++|+++|..||.|.. +.++.++.++..+|+|||+|.+.++|++|+..|
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 4 HHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp SCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 344455678899999999999999999999999999999 999999889999999999999999999999999
Q ss_pred CCCeeCCeEEEEEEec
Q 032812 81 NGKTLDGRVIVVDYAK 96 (133)
Q Consensus 81 ~~~~~~~~~l~v~~~~ 96 (133)
+|..+.|+.|+|.+++
T Consensus 84 ~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 84 DGKEFSGNPIKVSFAT 99 (99)
T ss_dssp TTCBSSSSBCEEEECC
T ss_pred CCCEeCCcEEEEEecC
Confidence 9999999999999874
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=113.57 Aligned_cols=85 Identities=36% Similarity=0.566 Sum_probs=79.9
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..|++..++|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34467899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEecC
Q 032812 93 DYAKP 97 (133)
Q Consensus 93 ~~~~~ 97 (133)
.++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=114.63 Aligned_cols=86 Identities=36% Similarity=0.543 Sum_probs=79.9
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.|..+.+..+ ++..+++|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457899999999999999999999999999999999887 78899999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 032812 94 YAKPKTSF 101 (133)
Q Consensus 94 ~~~~~~~~ 101 (133)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99876543
No 27
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=4.2e-21 Score=121.65 Aligned_cols=88 Identities=25% Similarity=0.456 Sum_probs=81.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..||+..++|+.|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 032812 94 YAKPKTSF 101 (133)
Q Consensus 94 ~~~~~~~~ 101 (133)
++.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99765543
No 28
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=1.5e-20 Score=113.90 Aligned_cols=83 Identities=22% Similarity=0.479 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
++++|||+|||.++++++|+++|..||.|..+.+..++.++..+|+|||+|.+.++|++|+..|+|..++|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCC
Q 032812 97 PKT 99 (133)
Q Consensus 97 ~~~ 99 (133)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.8e-21 Score=116.49 Aligned_cols=85 Identities=29% Similarity=0.439 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.+..++.++..+|+|||+|.+.++|++|+..||+..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
++.+.
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98654
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.9e-20 Score=115.35 Aligned_cols=87 Identities=22% Similarity=0.512 Sum_probs=81.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeC-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMD-RVSDKSKGFGFVTFASHEEAEKALSEM-NGKTLDGRVIV 91 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~l~ 91 (133)
...+.++|||+|||+++++++|+++|..||.|..+.++.+ +.++..+|+|||+|.+.++|++|+..| ++..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3467899999999999999999999999999999999988 778999999999999999999999999 99999999999
Q ss_pred EEEecCCCC
Q 032812 92 VDYAKPKTS 100 (133)
Q Consensus 92 v~~~~~~~~ 100 (133)
|.+++++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987654
No 31
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=4e-20 Score=113.33 Aligned_cols=85 Identities=27% Similarity=0.406 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..|| |..+.++.++.++..+|+|||+|.+.++|++|+ .|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45689999999999999999999999997 999999999888999999999999999999999 8999999999999999
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9876543
No 32
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=3.5e-20 Score=113.86 Aligned_cols=87 Identities=25% Similarity=0.371 Sum_probs=80.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC---eEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG---RVI 90 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~---~~l 90 (133)
...+.++|||+|||+++++++|+++|..||.|..+.+..++ ++..+|+|||+|.+.++|++|+..|++..+.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34578999999999999999999999999999999999988 78899999999999999999999999999988 999
Q ss_pred EEEEecCCCCC
Q 032812 91 VVDYAKPKTSF 101 (133)
Q Consensus 91 ~v~~~~~~~~~ 101 (133)
+|.++.++...
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876543
No 33
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.7e-20 Score=115.30 Aligned_cols=87 Identities=32% Similarity=0.535 Sum_probs=80.3
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+++|||+|.+.++|++|+..+++ .+.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3346789999999999999999999999999999999999988899999999999999999999999998 899999999
Q ss_pred EEecCCCC
Q 032812 93 DYAKPKTS 100 (133)
Q Consensus 93 ~~~~~~~~ 100 (133)
.++..+..
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99976443
No 34
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=112.91 Aligned_cols=84 Identities=35% Similarity=0.501 Sum_probs=78.9
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||.++++++|+++|..||.|..+.+..++.++..+|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 33467899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEec
Q 032812 93 DYAK 96 (133)
Q Consensus 93 ~~~~ 96 (133)
++++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 35
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-20 Score=115.35 Aligned_cols=84 Identities=25% Similarity=0.469 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.++++|||+|||.++++++|+++|..||.|..+.+..++.++..+|+|||+|.+.++|++|+..|+|..+.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46788999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCC
Q 032812 96 KPKT 99 (133)
Q Consensus 96 ~~~~ 99 (133)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7653
No 36
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-20 Score=114.38 Aligned_cols=86 Identities=17% Similarity=0.336 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVS-DKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
..+.++|||+|||+++++++|+++|..|| |..+.++.++.+ +..+|+|||+|.+.++|++|+ .|++..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45679999999999999999999999999 999999998877 889999999999999999999 999999999999999
Q ss_pred EecCCCCCC
Q 032812 94 YAKPKTSFR 102 (133)
Q Consensus 94 ~~~~~~~~~ 102 (133)
++.++....
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 998765443
No 37
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=115.68 Aligned_cols=87 Identities=32% Similarity=0.510 Sum_probs=81.3
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||.++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|+.|+..|+|..++|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33467899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 032812 93 DYAKPKT 99 (133)
Q Consensus 93 ~~~~~~~ 99 (133)
.+++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 38
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-19 Score=111.11 Aligned_cols=86 Identities=28% Similarity=0.527 Sum_probs=78.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||+++++++|+++|..||.|..+.++.+.. ..+++|||+|.+.++|++|+..|++..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999999999999999999999999999988763 38899999999999999999999999999999999
Q ss_pred EEecCCCC
Q 032812 93 DYAKPKTS 100 (133)
Q Consensus 93 ~~~~~~~~ 100 (133)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99987653
No 39
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=1.8e-20 Score=115.38 Aligned_cols=87 Identities=24% Similarity=0.393 Sum_probs=81.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee---CCeEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL---DGRVI 90 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~~~~l 90 (133)
...+.++|||+|||.++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|.+|+..|++..+ .++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 346789999999999999999999999999999999999988899999999999999999999999999998 89999
Q ss_pred EEEEecCCCC
Q 032812 91 VVDYAKPKTS 100 (133)
Q Consensus 91 ~v~~~~~~~~ 100 (133)
+|.++.++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=4.2e-20 Score=115.57 Aligned_cols=81 Identities=35% Similarity=0.614 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
..+|||+|||+++++++|+++|..||.|.++.++.+. +.++|+|||+|.+.++|++|+..|++..++|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999885 44789999999999999999999999999999999999986
Q ss_pred CCC
Q 032812 98 KTS 100 (133)
Q Consensus 98 ~~~ 100 (133)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=2.9e-20 Score=115.19 Aligned_cols=85 Identities=24% Similarity=0.426 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||.++++++|+++|..||.|..+.+..+..++..+|+|||+|.+.++|++|+..|+|..++|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
+.++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98654
No 42
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=3.8e-21 Score=115.34 Aligned_cols=81 Identities=23% Similarity=0.447 Sum_probs=72.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYG--QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
.+|||+|||+++++++|+++|..|| .|.++.++.++.+|.++|+|||+|.+.++|++|+..|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999999988
Q ss_pred CCC
Q 032812 97 PKT 99 (133)
Q Consensus 97 ~~~ 99 (133)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 43
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=113.53 Aligned_cols=86 Identities=28% Similarity=0.410 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcc-CCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-eCCeEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQ-YGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKT-LDGRVIVV 92 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~l~v 92 (133)
..+..+|||+|||+++++++|+++|.. ||.|..+.++.+. ++..+|+|||+|.+.++|.+|+..|++.. +.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 457899999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred EEecCCCCC
Q 032812 93 DYAKPKTSF 101 (133)
Q Consensus 93 ~~~~~~~~~ 101 (133)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999875533
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=114.71 Aligned_cols=83 Identities=25% Similarity=0.445 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC--eEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eeCCe
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQ--VVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGK----TLDGR 88 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~~~ 88 (133)
...-.+|||+|||+++++++|+++|+.||. +.++++++++.++.++|+|||+|.+.++|++|++.||+. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345578999999999999999999999995 678999999989999999999999999999999999997 48999
Q ss_pred EEEEEEecC
Q 032812 89 VIVVDYAKP 97 (133)
Q Consensus 89 ~l~v~~~~~ 97 (133)
.|.|.+|++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-19 Score=111.14 Aligned_cols=86 Identities=27% Similarity=0.399 Sum_probs=78.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.|..+.++.+..+ .+|+|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3467899999999999999999999999999999999988533 68999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 032812 94 YAKPKTSF 101 (133)
Q Consensus 94 ~~~~~~~~ 101 (133)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99875543
No 46
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-20 Score=112.76 Aligned_cols=85 Identities=29% Similarity=0.507 Sum_probs=80.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeE-EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE---
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVV-EANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRV--- 89 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~--- 89 (133)
...+.++|||+|||+++++++|+++|..||.|. .+.++.++.++..+|+|||+|.+.++|++|+..||+..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 346789999999999999999999999999999 9999999889999999999999999999999999999999998
Q ss_pred -EEEEEecCC
Q 032812 90 -IVVDYAKPK 98 (133)
Q Consensus 90 -l~v~~~~~~ 98 (133)
|+|.++++.
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999998764
No 47
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.3e-20 Score=111.58 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLS----DAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVI 90 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 90 (133)
..+.++|||+|||+++++++|+ ++|..||.|.++.++.++.+ +++|||+|.+.++|++|+..|||..++|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4567899999999999999999 99999999999999888744 7899999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 032812 91 VVDYAKPKTS 100 (133)
Q Consensus 91 ~v~~~~~~~~ 100 (133)
+|.+++++..
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999987543
No 48
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=1.3e-19 Score=118.72 Aligned_cols=85 Identities=31% Similarity=0.517 Sum_probs=80.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.+.++|||+|||+++++++|+++|..||.|..|.++.++.++..+++|||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46799999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 032812 96 KPKTS 100 (133)
Q Consensus 96 ~~~~~ 100 (133)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=109.35 Aligned_cols=83 Identities=27% Similarity=0.449 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCC-cceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDK-SKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
..++|||+|||.++++++|+++|..||.|..+.+..+..++. .+|+|||+|.+.++|++|+..|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999988876655 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 032812 96 KPKT 99 (133)
Q Consensus 96 ~~~~ 99 (133)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 50
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=1.2e-19 Score=111.81 Aligned_cols=82 Identities=28% Similarity=0.423 Sum_probs=78.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+.+++++|+++|..||.|..+.++.+. ++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34678999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred Eec
Q 032812 94 YAK 96 (133)
Q Consensus 94 ~~~ 96 (133)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 51
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=8.5e-20 Score=110.18 Aligned_cols=83 Identities=30% Similarity=0.398 Sum_probs=77.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.|..+.+..++ ++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34578999999999999999999999999999999999988 48899999999999999999999999999999999999
Q ss_pred EecC
Q 032812 94 YAKP 97 (133)
Q Consensus 94 ~~~~ 97 (133)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8864
No 52
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=113.42 Aligned_cols=86 Identities=34% Similarity=0.540 Sum_probs=80.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+.. ++..++|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 356789999999999999999999999999999999999988999999999999999999999998 9999999999999
Q ss_pred EecCCCC
Q 032812 94 YAKPKTS 100 (133)
Q Consensus 94 ~~~~~~~ 100 (133)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9987653
No 53
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=1.1e-19 Score=108.99 Aligned_cols=83 Identities=39% Similarity=0.484 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.+..+ ++..+|+|||+|.+.++|++|+..|++..++|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999998874 788999999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
+++..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98754
No 54
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=1.2e-19 Score=108.22 Aligned_cols=81 Identities=23% Similarity=0.426 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+.++|||+|||+++++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|++|+ .|++..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999999999889999999999999999999999 999999999999999987
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=3.7e-20 Score=118.09 Aligned_cols=86 Identities=38% Similarity=0.614 Sum_probs=80.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..|++..++|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34678999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecCCC
Q 032812 94 YAKPKT 99 (133)
Q Consensus 94 ~~~~~~ 99 (133)
++.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998653
No 56
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4e-19 Score=108.80 Aligned_cols=84 Identities=31% Similarity=0.458 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4578999999999999999999999999999999999998889999999999999999999997 57899999999999
Q ss_pred ecCCCC
Q 032812 95 AKPKTS 100 (133)
Q Consensus 95 ~~~~~~ 100 (133)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987654
No 57
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=119.31 Aligned_cols=81 Identities=30% Similarity=0.438 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYG--QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..++|||+|||+++++++|+++|..|| .|.++.++.++.+|.++|||||+|.+.++|++|+..|+|..++|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred ecC
Q 032812 95 AKP 97 (133)
Q Consensus 95 ~~~ 97 (133)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 58
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5e-20 Score=111.85 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....++|||+|||+++++++|+++|..||.|..+.++.+..++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35678999999999999999999999999998887888777899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
+..+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87543
No 59
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-19 Score=110.14 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.+.. ++..+++|||+|.+.++|++|+..||+..+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45779999999999999999999999999999998854 345789999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
++++.
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98754
No 60
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=2.2e-19 Score=106.70 Aligned_cols=82 Identities=39% Similarity=0.608 Sum_probs=75.6
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|++|+. +++..++|+.|+|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 345678999999999999999999999999999999999998889999999999999999999995 5888999999999
Q ss_pred EEe
Q 032812 93 DYA 95 (133)
Q Consensus 93 ~~~ 95 (133)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 61
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=1.5e-19 Score=119.61 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.++++|||+|||+++++++|+.+|..||.|..|.++.++.++.++|+|||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 032812 96 KPKTS 100 (133)
Q Consensus 96 ~~~~~ 100 (133)
.++..
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 76543
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=5.6e-20 Score=115.21 Aligned_cols=81 Identities=26% Similarity=0.423 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..|||..++|+.|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 46789999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred c
Q 032812 96 K 96 (133)
Q Consensus 96 ~ 96 (133)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.5e-20 Score=114.91 Aligned_cols=83 Identities=29% Similarity=0.372 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-e
Q 032812 16 HFCPLCYVAGLSF------YTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG-R 88 (133)
Q Consensus 16 ~~~~~l~v~~lp~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~-~ 88 (133)
..+++|||+|||+ ++++++|+++|..||.|.++.++.++.++.++|+|||+|.+.++|++|+..|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4568999999999 99999999999999999999999999889999999999999999999999999999999 9
Q ss_pred EEEEEEecCC
Q 032812 89 VIVVDYAKPK 98 (133)
Q Consensus 89 ~l~v~~~~~~ 98 (133)
.|+|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998753
No 64
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-20 Score=115.79 Aligned_cols=84 Identities=31% Similarity=0.575 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+.++|||+|||+++++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|++|+..|+|..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCCC
Q 032812 97 PKTS 100 (133)
Q Consensus 97 ~~~~ 100 (133)
++..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7543
No 65
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=1.4e-19 Score=118.71 Aligned_cols=84 Identities=35% Similarity=0.533 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
....+|||+|||+++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|+.|+..|||..++|+.|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 032812 96 KPKT 99 (133)
Q Consensus 96 ~~~~ 99 (133)
+++.
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8754
No 66
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.3e-19 Score=109.31 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-----eE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG-----RV 89 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~-----~~ 89 (133)
.....+|||+|||+++++++|+++|..||.|..+.++.+ ++|||+|.+.++|++|+..||+..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356799999999999999999999999999999998765 799999999999999999999999999 99
Q ss_pred EEEEEecCCC
Q 032812 90 IVVDYAKPKT 99 (133)
Q Consensus 90 l~v~~~~~~~ 99 (133)
|+|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999998754
No 67
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=112.50 Aligned_cols=84 Identities=31% Similarity=0.576 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+.. ++..++|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999988899999999999999999999987 9999999999999998
Q ss_pred CCCCC
Q 032812 97 PKTSF 101 (133)
Q Consensus 97 ~~~~~ 101 (133)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76543
No 68
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=111.38 Aligned_cols=86 Identities=21% Similarity=0.335 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEe-eCCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCeEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQ-VVEANIV-MDRVSDKSKGFGFVTFASHEEAEKALSEMN--GKTLDGRVI 90 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~~~~l 90 (133)
..+.++|||+|||+++++++|+++|..||. |..+.++ .+..++..+|+|||+|.+.++|..|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 457889999999999999999999999998 9999988 777788899999999999999999999996 589999999
Q ss_pred EEEEecCCCC
Q 032812 91 VVDYAKPKTS 100 (133)
Q Consensus 91 ~v~~~~~~~~ 100 (133)
+|.++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987543
No 69
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=2e-19 Score=111.43 Aligned_cols=87 Identities=31% Similarity=0.549 Sum_probs=76.2
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|.+|+..+ +..++|+.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 33467899999999999999999999999999999999999888999999999999999999999876 59999999999
Q ss_pred EEecCCCC
Q 032812 93 DYAKPKTS 100 (133)
Q Consensus 93 ~~~~~~~~ 100 (133)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987643
No 70
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=111.39 Aligned_cols=84 Identities=21% Similarity=0.325 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhccCCCeEEEEEeeCCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLS---DAFSQYGQVVEANIVMDRVSD---KSKGFGFVTFASHEEAEKALSEMNGKTLDGRV 89 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 89 (133)
....+|||+|||+++++++|+ ++|..||.|..+.+..+..++ ..+|+|||+|.+.++|++|+..||+..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999998887543 45699999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 032812 90 IVVDYAKPKT 99 (133)
Q Consensus 90 l~v~~~~~~~ 99 (133)
|+|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 71
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.1e-19 Score=105.67 Aligned_cols=83 Identities=25% Similarity=0.395 Sum_probs=77.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
......+|||+|||+++++++|+++|..| .|..+.++.+ .++..+|+|||+|.+.++|++|+. |++..++|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34578999999999999999999999999 8999999998 589999999999999999999999 99999999999999
Q ss_pred EecCCC
Q 032812 94 YAKPKT 99 (133)
Q Consensus 94 ~~~~~~ 99 (133)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998753
No 72
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=3.5e-19 Score=112.49 Aligned_cols=81 Identities=23% Similarity=0.441 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+.++|||+|||.++++++|+++|..||.|..+.+..++.++..+|+|||+|.+.++|++|+ .|+|..++|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999889999999999999999999999 899999999999999998
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 73
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=110.80 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=73.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG--KTLDGRVIV 91 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~~~~l~ 91 (133)
+..+..+|||+|||+++++++|+++|..||.|.++.++.+ +|+|||+|.+.++|.+|+..|++ ..+.|+.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999999999999999999999999998764 58999999999999999998864 789999999
Q ss_pred EEEecCCCC
Q 032812 92 VDYAKPKTS 100 (133)
Q Consensus 92 v~~~~~~~~ 100 (133)
|.+++++..
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999987543
No 74
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=8.2e-20 Score=110.24 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
....+|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45689999999999999999999999999988888888878999999999999999999999999999999999999987
Q ss_pred cC
Q 032812 96 KP 97 (133)
Q Consensus 96 ~~ 97 (133)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 75
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=5.5e-19 Score=111.67 Aligned_cols=84 Identities=26% Similarity=0.409 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....++|||+|||.++++++|+++|..||.|..+.+..+. ++..+|+|||+|.+.++|.+|+..|++..++|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
+....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 98654
No 76
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.6e-19 Score=106.08 Aligned_cols=79 Identities=27% Similarity=0.447 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.+. +++|||+|.+.++|++|+..|++..+.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4578999999999999999999999999999999886 47999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
++++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 77
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=3.6e-19 Score=108.49 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe--eCCeEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKT--LDGRVIVV 92 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~~~~l~v 92 (133)
..++++|||+|||..+++++|+++|.+||.|.++.+++. +|+|||+|.+.++|.+|+..|++.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 468899999999999999999999999999999988743 5899999999999999999999876 78999999
Q ss_pred EEecCCC
Q 032812 93 DYAKPKT 99 (133)
Q Consensus 93 ~~~~~~~ 99 (133)
.++++++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998753
No 78
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.7e-19 Score=108.12 Aligned_cols=83 Identities=27% Similarity=0.482 Sum_probs=74.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.| .++.+ .++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34578999999999999999999999999977 45555 478899999999999999999999999999999999999
Q ss_pred EecCCCC
Q 032812 94 YAKPKTS 100 (133)
Q Consensus 94 ~~~~~~~ 100 (133)
+++++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987643
No 79
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=7e-20 Score=116.94 Aligned_cols=84 Identities=20% Similarity=0.390 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE--EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eeCCe
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVE--ANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGK----TLDGR 88 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~~~ 88 (133)
....++|||+|||+++++++|+++|..||.|.. |.++.++.++.++|||||+|.+. +|.+|+..|++. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 457899999999999999999999999999976 99999998999999999999999 999999999999 99999
Q ss_pred EEEEEEecCCC
Q 032812 89 VIVVDYAKPKT 99 (133)
Q Consensus 89 ~l~v~~~~~~~ 99 (133)
.|+|.+++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998754
No 80
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=5.3e-20 Score=112.36 Aligned_cols=85 Identities=19% Similarity=0.343 Sum_probs=75.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDR-VSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
......++|||+|||+++++++|+++|..|| |..+.++.+. .++..+|+|||+|.+.++|.+|+ .|+|..++|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3446789999999999999999999999999 9999999887 58999999999999999999999 8999999999999
Q ss_pred EEEecCCC
Q 032812 92 VDYAKPKT 99 (133)
Q Consensus 92 v~~~~~~~ 99 (133)
|.+++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998754
No 81
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=8e-19 Score=107.21 Aligned_cols=84 Identities=38% Similarity=0.551 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..|+ .+.++.+..++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 46789999999999999999999999774 677778877899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9876543
No 82
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=110.80 Aligned_cols=85 Identities=28% Similarity=0.543 Sum_probs=77.8
Q ss_pred cccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 12 ICRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 12 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
.......++|||+|||.++++++|+++|..||.|..+.+..+. +..+|+|||+|.+.++|++|+..|+|..++|+.|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445678999999999999999999999999999999998875 34889999999999999999999999999999999
Q ss_pred EEEecCC
Q 032812 92 VDYAKPK 98 (133)
Q Consensus 92 v~~~~~~ 98 (133)
|++++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999865
No 83
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-20 Score=110.20 Aligned_cols=81 Identities=25% Similarity=0.459 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..|||..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35688999999999999999999999999999999999988899999999999999999999999999999998887654
Q ss_pred e
Q 032812 95 A 95 (133)
Q Consensus 95 ~ 95 (133)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 84
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.4e-20 Score=115.11 Aligned_cols=82 Identities=27% Similarity=0.418 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
..++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+ .|++..+.|+.|+|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999888999999999999999999999 999999999999999987
Q ss_pred CCC
Q 032812 97 PKT 99 (133)
Q Consensus 97 ~~~ 99 (133)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 543
No 85
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=109.82 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--eeCCeEEE
Q 032812 15 NHFCPLCYVAGLSF-YTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGK--TLDGRVIV 91 (133)
Q Consensus 15 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~~~~l~ 91 (133)
..++++|||+|||+ ++++++|+++|..||.|.++.++.++ ++|||+|.+.++|.+|+..|++. .+.|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 35789999999999 99999999999999999999987653 78999999999999999999864 59999999
Q ss_pred EEEecCCCC
Q 032812 92 VDYAKPKTS 100 (133)
Q Consensus 92 v~~~~~~~~ 100 (133)
|.++.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 1x4d_A 86 VHLSQKYKR 94 (102)
T ss_dssp EEEECCCTT
T ss_pred EEECCCCCC
Confidence 999986543
No 86
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=104.71 Aligned_cols=82 Identities=22% Similarity=0.392 Sum_probs=73.8
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||+++++++|+++|..||.|..+.+.+ ++|||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3456789999999999999999999999999999998852 49999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 032812 93 DYAKPKTSFR 102 (133)
Q Consensus 93 ~~~~~~~~~~ 102 (133)
.++.++....
T Consensus 77 ~~a~~~~~~~ 86 (92)
T 2dgt_A 77 QLSTSRLRTA 86 (92)
T ss_dssp EESSCCCSCC
T ss_pred EEccCCCCCC
Confidence 9998765433
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=110.64 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|.++.++.++. +.++|+|||+|.+.++|++|+. +++..++|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999985 8999999999999999999998 899999999999998
Q ss_pred ec
Q 032812 95 AK 96 (133)
Q Consensus 95 ~~ 96 (133)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 64
No 88
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=1.6e-18 Score=106.19 Aligned_cols=79 Identities=32% Similarity=0.512 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.+. +++|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 4567999999999999999999999999999999875 35899999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
+.++...
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9876544
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-19 Score=113.80 Aligned_cols=81 Identities=35% Similarity=0.535 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||.++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..|++..++|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999999988899999999999999999999999999999999999987
Q ss_pred e
Q 032812 95 A 95 (133)
Q Consensus 95 ~ 95 (133)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 90
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-18 Score=105.90 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCeeCCeEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM--NGKTLDGRVIVV 92 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~~~~l~v 92 (133)
..++++|||+|||+.+++++|+++|..||.|..+.++.+ +|+|||+|.+.++|.+|+..| ++..+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 357899999999999999999999999999999988654 589999999999999999987 467899999999
Q ss_pred EEecCCCC
Q 032812 93 DYAKPKTS 100 (133)
Q Consensus 93 ~~~~~~~~ 100 (133)
.+++.+..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99987543
No 91
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=107.90 Aligned_cols=82 Identities=27% Similarity=0.536 Sum_probs=75.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
.....++|||+|||.++++++|+++|..||.|..+.+..+ +|+|||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999998765 5899999999999999999999999999999999
Q ss_pred EecCCCCC
Q 032812 94 YAKPKTSF 101 (133)
Q Consensus 94 ~~~~~~~~ 101 (133)
+++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99876543
No 92
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=1.1e-19 Score=116.64 Aligned_cols=84 Identities=35% Similarity=0.533 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.+.++|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45789999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred cCCC
Q 032812 96 KPKT 99 (133)
Q Consensus 96 ~~~~ 99 (133)
+++.
T Consensus 125 ~~~~ 128 (135)
T 2lea_A 125 RYGR 128 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 93
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=108.71 Aligned_cols=83 Identities=24% Similarity=0.484 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee--------C
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL--------D 86 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--------~ 86 (133)
..+.++|||+|||+++++++|+++|..||.|..+.++.++ ++..+|+|||+|.+.++|++|+..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567999999999999999999999999999999999998 899999999999999999999999999999 5
Q ss_pred CeEEEEEEecCC
Q 032812 87 GRVIVVDYAKPK 98 (133)
Q Consensus 87 ~~~l~v~~~~~~ 98 (133)
++.|.|.++.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 778999998864
No 94
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.3e-19 Score=104.94 Aligned_cols=75 Identities=29% Similarity=0.571 Sum_probs=71.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 20 LCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 20 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
+|||+|||+++++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|++|+. +++..++|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999988889999999999999999999997 9999999999999865
No 95
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.8e-19 Score=107.41 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=75.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
......+|||+|||+++++++|+++|..||. ..+.++.++ ++.++|+|||+|.+.++|++|+ .+++..++++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 3456789999999999999999999999995 499999998 8999999999999999999999 579999999999999
Q ss_pred EecCCC
Q 032812 94 YAKPKT 99 (133)
Q Consensus 94 ~~~~~~ 99 (133)
.+.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 96
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=109.59 Aligned_cols=81 Identities=14% Similarity=0.193 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG--KTLDGRVIVV 92 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~~~~l~v 92 (133)
..++++|||+|||+++++++|+++|..||.|.++.++.+ +|+|||+|.+.++|.+|+..|++ ..+.|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 356899999999999999999999999999999998764 58999999999999999998874 6899999999
Q ss_pred EEecCCCCC
Q 032812 93 DYAKPKTSF 101 (133)
Q Consensus 93 ~~~~~~~~~ 101 (133)
.+++++...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 97
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=106.60 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--eeCCeEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGK--TLDGRVIVV 92 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~~~~l~v 92 (133)
..++++|||+|||+++++++|+++|..||.|..+.++.+ +|+|||+|.+.++|.+|+..|++. .+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 457899999999999999999999999999999988653 589999999999999999988764 589999999
Q ss_pred EEecCCCCC
Q 032812 93 DYAKPKTSF 101 (133)
Q Consensus 93 ~~~~~~~~~ 101 (133)
.+++.+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999876543
No 98
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=6.4e-21 Score=119.31 Aligned_cols=90 Identities=29% Similarity=0.424 Sum_probs=81.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVE--------ANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD 86 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 86 (133)
..+.++|||+|||+++++++|+++|..||.|.. +.++.++.++..+|+|||+|.+.++|++|+..|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356789999999999999999999999999998 888888778999999999999999999999999999999
Q ss_pred CeEEEEEEecCCCCCCCC
Q 032812 87 GRVIVVDYAKPKTSFRSG 104 (133)
Q Consensus 87 ~~~l~v~~~~~~~~~~~~ 104 (133)
|+.|+|.++.++.....+
T Consensus 84 g~~l~V~~a~~~~~~~~g 101 (116)
T 2lcw_A 84 GNPIKVSFATRRADFNRG 101 (116)
Confidence 999999999876654433
No 99
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=1.3e-18 Score=107.64 Aligned_cols=79 Identities=27% Similarity=0.456 Sum_probs=72.3
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||+++++++|+++|..||.|..+.+. +|+|||+|.+.++|++|+..|+|..++|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344678999999999999999999999999999999886 589999999999999999999999999999999
Q ss_pred EEecCCC
Q 032812 93 DYAKPKT 99 (133)
Q Consensus 93 ~~~~~~~ 99 (133)
.+++++.
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9998754
No 100
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=106.76 Aligned_cols=83 Identities=28% Similarity=0.322 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVE-ANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
.....+|||+|||+++++++|+++|..||.|.. +.++.+ .++..+|+|||+|.+.++|++|+.. ++..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 356799999999999999999999999999987 888887 5899999999999999999999987 9999999999999
Q ss_pred EecCCC
Q 032812 94 YAKPKT 99 (133)
Q Consensus 94 ~~~~~~ 99 (133)
.+..+.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 101
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=5.7e-20 Score=109.95 Aligned_cols=80 Identities=31% Similarity=0.611 Sum_probs=73.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
++|||+|||.++++++|+++|..||.|..+.+..++.++.++|+|||+|.+.+ |..|+..|+|..++|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999999999999999999999865
Q ss_pred C
Q 032812 99 T 99 (133)
Q Consensus 99 ~ 99 (133)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 102
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=104.96 Aligned_cols=80 Identities=26% Similarity=0.438 Sum_probs=73.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC--CeEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD--GRVIV 91 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~--~~~l~ 91 (133)
...+.++|||+|||.++++++|+++|..||.|..+.+..+ +++|||+|.+.++|++|+..||+..+. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3467799999999999999999999999999999988643 579999999999999999999999999 99999
Q ss_pred EEEecCCC
Q 032812 92 VDYAKPKT 99 (133)
Q Consensus 92 v~~~~~~~ 99 (133)
|.+++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998754
No 103
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-19 Score=112.75 Aligned_cols=83 Identities=24% Similarity=0.452 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCe----EEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQV----VEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVI 90 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 90 (133)
..+.++|||+|||+++++++|+++|..||.| ..+.+. ++..+|+|||+|.+.++|++|+..|++..+.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3467999999999999999999999999988 445443 67789999999999999999999999999999999
Q ss_pred EEEEecCCCCC
Q 032812 91 VVDYAKPKTSF 101 (133)
Q Consensus 91 ~v~~~~~~~~~ 101 (133)
+|.++.++...
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 104
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=5.5e-19 Score=109.86 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=71.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYG-QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
......+|||+|||+++++++|+++|..|| .|..+.+.. +..+|+|||+|.+.++|++|+..|||..++|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 899988743 247899999999999999999999999999999999
Q ss_pred EEecCC
Q 032812 93 DYAKPK 98 (133)
Q Consensus 93 ~~~~~~ 98 (133)
+++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998753
No 105
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=105.10 Aligned_cols=81 Identities=27% Similarity=0.398 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+.+..+ +++|||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 356789999999999999999999999999999988754 58999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032812 95 AKPKTSF 101 (133)
Q Consensus 95 ~~~~~~~ 101 (133)
++++...
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9876543
No 106
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=106.57 Aligned_cols=77 Identities=29% Similarity=0.443 Sum_probs=71.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
++|||+|||+++++++|+++|..||.|..+.+..+ .+|+|||+|.+.++|++|+..|++..+.|+.|+|.+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999998766 5789999999999999999999999999999999999876
Q ss_pred CC
Q 032812 99 TS 100 (133)
Q Consensus 99 ~~ 100 (133)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 107
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=1.1e-18 Score=109.52 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQ---VVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
....++|||+|||+++++++|+++|..||. |..+.++.++. +..+|+|||+|.+.++|++|+. +++..++|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999999999999999999998 89999999885 8999999999999999999998 999999999999
Q ss_pred EEEecCC
Q 032812 92 VDYAKPK 98 (133)
Q Consensus 92 v~~~~~~ 98 (133)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998643
No 108
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=107.88 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 032812 15 NHFCPLCYVAGLSFYT------SNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGR 88 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~ 88 (133)
....++|||+|||+.+ ++++|+++|..||.|..+.+. ..+|.++|+|||+|.+.++|++|+..|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3457899999999999 679999999999999999887 34788999999999999999999999999999998
Q ss_pred -EEEEEEecCCC
Q 032812 89 -VIVVDYAKPKT 99 (133)
Q Consensus 89 -~l~v~~~~~~~ 99 (133)
.|+|.++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999987544
No 109
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=104.13 Aligned_cols=76 Identities=34% Similarity=0.632 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
++|||+|||+++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..++ ..++|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999998 9999999999876
No 110
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-18 Score=102.28 Aligned_cols=78 Identities=23% Similarity=0.429 Sum_probs=72.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.|..+.+.. ++|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999999999999999999999999998863 389999999999999999999999999999999
Q ss_pred EecCCC
Q 032812 94 YAKPKT 99 (133)
Q Consensus 94 ~~~~~~ 99 (133)
++.++.
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998754
No 111
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=104.61 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CeeCCeEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQ-VVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG-KTLDGRVIVV 92 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~~~~l~v 92 (133)
....++|||+|||+++++++|+++|..||. +..+.+. .+++|||+|.+.++|++|+..||+ ..++|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 457789999999999999999999999999 5555442 468999999999999999999999 9999999999
Q ss_pred EEecCCCCC
Q 032812 93 DYAKPKTSF 101 (133)
Q Consensus 93 ~~~~~~~~~ 101 (133)
.++.++...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999876543
No 112
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=7.1e-19 Score=113.02 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQ---VVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
.....+|||+|||+++++++|+++|..||. |..+.++.++. |.++|+|||+|.+.++|++|+. +++..++|+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999999999999999999999 88999999985 9999999999999999999998 999999999999
Q ss_pred EEEecC
Q 032812 92 VDYAKP 97 (133)
Q Consensus 92 v~~~~~ 97 (133)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998864
No 113
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=7.2e-19 Score=122.01 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYG--QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..++|||+|||+++++++|+++|..|| .|.+|.++.++.++..+|||||+|.+.++|++|+..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999998999999999999999999999999999999999999998
Q ss_pred ec
Q 032812 95 AK 96 (133)
Q Consensus 95 ~~ 96 (133)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 114
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=3.1e-18 Score=106.03 Aligned_cols=76 Identities=22% Similarity=0.478 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 16 HFCPLCYVAGLSFY-TSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
...++|||+|||++ +++++|+++|..||.|..+.+ .+++|||+|.+.++|++|+..|++..++|+.|+|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45689999999999 999999999999999999988 468999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
++.+.
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97543
No 115
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=4.2e-18 Score=116.64 Aligned_cols=84 Identities=23% Similarity=0.394 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++|+|||+|.+.++|++|+..+++..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8654
No 116
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.5e-18 Score=102.18 Aligned_cols=77 Identities=32% Similarity=0.530 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccC--CCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQY--GQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
..+.++|||+|||+++++++|+++|..| |.|..+.+. +++|||+|.+.++|++|+..||+..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3567999999999999999999999999 899988763 469999999999999999999999999999999
Q ss_pred EEecCCC
Q 032812 93 DYAKPKT 99 (133)
Q Consensus 93 ~~~~~~~ 99 (133)
.+++++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998754
No 117
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=101.59 Aligned_cols=78 Identities=24% Similarity=0.428 Sum_probs=71.4
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM-NGKTLDGRVIV 91 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~l~ 91 (133)
....+.++|||+|||.++++++|+++|..||.|..+.+..+ +|+|||+|.+.++|++|+..| ++..++|+.|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34467899999999999999999999999999999998763 589999999999999999988 99999999999
Q ss_pred EEEec
Q 032812 92 VDYAK 96 (133)
Q Consensus 92 v~~~~ 96 (133)
|.+++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 118
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=110.20 Aligned_cols=82 Identities=16% Similarity=0.361 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLS----DAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVI 90 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 90 (133)
..++.+|||+|||+.+++++|+ ++|+.||.|.+|.+.. ++..+|+|||+|.+.++|..|+..|||..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3568899999999999999876 6899999999987642 67789999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 032812 91 VVDYAKPKT 99 (133)
Q Consensus 91 ~v~~~~~~~ 99 (133)
+|.+++.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998654
No 119
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=5.7e-18 Score=102.80 Aligned_cols=77 Identities=21% Similarity=0.463 Sum_probs=71.1
Q ss_pred cCCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 14 RNHFCPLCYVAGLSF-YTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
...++++|||+|||+ ++++++|+++|..||.|..+.+. +|+|||+|.+.++|.+|+..|+|..++|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 346789999999998 99999999999999999999882 589999999999999999999999999999999
Q ss_pred EEecCC
Q 032812 93 DYAKPK 98 (133)
Q Consensus 93 ~~~~~~ 98 (133)
.+++.+
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999764
No 120
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=108.80 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCe-EEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQV-VEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
..+.++|||+|||+++++++|+++|..||.| ..+.++.++ ++..+|+|||+|.+.++|++|+.. ++..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567999999999999999999999999999 889999998 899999999999999999999976 9999999999999
Q ss_pred EecCCC
Q 032812 94 YAKPKT 99 (133)
Q Consensus 94 ~~~~~~ 99 (133)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997543
No 121
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=1.4e-18 Score=105.19 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLS----DAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVI 90 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 90 (133)
..++++|||+|||.++++++|+ ++|..||.|..+.+.. ++..+|+|||+|.+.++|..|+..|+|..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4578999999999999999999 9999999999998763 56678999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 032812 91 VVDYAKPKT 99 (133)
Q Consensus 91 ~v~~~~~~~ 99 (133)
+|.++.++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 122
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=6.9e-18 Score=126.73 Aligned_cols=84 Identities=25% Similarity=0.530 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.+.++|||+|||+.+++++|..+|..||.|..|.|+.++.++..+|||||+|.+.++|.+||..|||..|.|..|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 032812 96 KPKT 99 (133)
Q Consensus 96 ~~~~ 99 (133)
..+.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7643
No 123
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.3e-18 Score=101.89 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
...++|||+|||+++++++|+++|..||.|..| +.++.++. +|||+|.+.++|++|+. |++..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456799999999999999999999999999987 55554554 99999999999999999 9999999999999988
Q ss_pred cCCC
Q 032812 96 KPKT 99 (133)
Q Consensus 96 ~~~~ 99 (133)
.++.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 7554
No 124
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.9e-18 Score=105.42 Aligned_cols=78 Identities=17% Similarity=0.408 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....++|||+|||.++++++|+++|..||.|.++.+.. .+|+|||+|.+.++|.+|+..|+|..++|+.|+|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34578999999999999999999999999999998863 468999999999999999999999999999999999
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8763
No 125
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-19 Score=110.87 Aligned_cols=84 Identities=25% Similarity=0.286 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+..+|||+|||+++++++|+++|..||.|.. .++.+..++.++|+|||+|.+.++|++|+. |++..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999998877 555555578889999999999999999998 999999999999999
Q ss_pred ecCCCC
Q 032812 95 AKPKTS 100 (133)
Q Consensus 95 ~~~~~~ 100 (133)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987653
No 126
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=104.14 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....++|||+|||+++++++|+++|..||.|. +.++.+ ..+|+|||+|.+.++|++|+..|||..++|+.|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999996 555543 4678999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98754
No 127
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.2e-18 Score=104.35 Aligned_cols=78 Identities=19% Similarity=0.382 Sum_probs=70.6
Q ss_pred cCCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 14 RNHFCPLCYVAGLSF-YTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
...+.++|||+|||+ ++++++|+++|..||.|..+.+. +|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 346789999999998 99999999999999999999883 579999999999999999999999999999999
Q ss_pred EEecCCC
Q 032812 93 DYAKPKT 99 (133)
Q Consensus 93 ~~~~~~~ 99 (133)
.+++++.
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9998654
No 128
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3.5e-18 Score=101.22 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
...-|||+||++.+++++|+++|.+||+|..+.+.. ++|+|||+|.+.++|.+|++.||+..++|+.|+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 357799999999999999999999999999999865 46999999999999999999999999999999999884
No 129
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.2e-19 Score=111.49 Aligned_cols=83 Identities=25% Similarity=0.332 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+..+|||+|||+++++++|+++|..||.|..+.++.+..++..+|+|||+|.+.++|++|+. ||+..++|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3467899999999999999999999999999886556666689999999999999999999998 999999999999999
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8753
No 130
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=1.4e-17 Score=108.99 Aligned_cols=82 Identities=28% Similarity=0.523 Sum_probs=78.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
.++|||+|||+++++++|+++|..||.|.++.++.++.++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CC
Q 032812 98 KT 99 (133)
Q Consensus 98 ~~ 99 (133)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 131
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=6.2e-18 Score=105.37 Aligned_cols=81 Identities=19% Similarity=0.420 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..++++|||+|||+++++++|+++|..||.|..+.++.+ +..+|+|||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456889999999999999999999999999999998764 44589999999999999999999999999999999999
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
+.++
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9754
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=103.97 Aligned_cols=80 Identities=28% Similarity=0.419 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|||+++++++|+++|..||.|..+ ..++..+|+|||+|.+.++|++|+..|+|..+.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567999999999999999999999999988666 23788999999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 98754
No 133
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=1.1e-17 Score=109.85 Aligned_cols=84 Identities=25% Similarity=0.377 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
++++|||+|||+++++++|+++|+.||.|.++.++.++.++.++|+|||+|.+.++|++|+..|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999988889999999999999999999999999999999999999998
Q ss_pred CCCC
Q 032812 97 PKTS 100 (133)
Q Consensus 97 ~~~~ 100 (133)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6543
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=106.99 Aligned_cols=81 Identities=15% Similarity=0.237 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEE
Q 032812 15 NHFCPLCYVAGLSFY-TSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG--KTLDGRVIV 91 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~~~~l~ 91 (133)
..++++|||+|||++ +++++|+++|..||.|.++.+++ .+|+|||+|.+.++|.+|+..|++ ..+.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457899999999998 99999999999999999999864 358999999999999999998864 569999999
Q ss_pred EEEecCCCCC
Q 032812 92 VDYAKPKTSF 101 (133)
Q Consensus 92 v~~~~~~~~~ 101 (133)
|.++..+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999865543
No 135
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.6e-17 Score=108.64 Aligned_cols=83 Identities=25% Similarity=0.546 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+..+|||+|||..+++++|+++|..||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|||..++|+.|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecC
Q 032812 95 AKP 97 (133)
Q Consensus 95 ~~~ 97 (133)
+++
T Consensus 164 a~~ 166 (166)
T 3md3_A 164 AAK 166 (166)
T ss_dssp SCC
T ss_pred cCC
Confidence 863
No 136
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=1.1e-17 Score=112.50 Aligned_cols=88 Identities=32% Similarity=0.466 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
...+|||+|||+++++++|+++|..||.|..+.+..+..++..+|+|||+|.+.++|.+|+.. ++..++|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 458999999999999999999999999999999999988899999999999999999999976 8999999999999998
Q ss_pred CCCCCCCCC
Q 032812 97 PKTSFRSGM 105 (133)
Q Consensus 97 ~~~~~~~~~ 105 (133)
++.......
T Consensus 182 ~k~~~~~~~ 190 (196)
T 1l3k_A 182 SKQEMASAS 190 (196)
T ss_dssp ---------
T ss_pred ChhHhcccc
Confidence 876554443
No 137
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.7e-18 Score=104.86 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=72.3
Q ss_pred ccCCCCCeEEE--cCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-----
Q 032812 13 CRNHFCPLCYV--AGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL----- 85 (133)
Q Consensus 13 ~~~~~~~~l~v--~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~----- 85 (133)
....++.+||| +||++++++++|+++|..||.|..+.+.. .+|||||+|.+.++|++|+..|||..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 33457889999 78999999999999999999999987643 368999999999999999999999998
Q ss_pred CCeEEEEEEecCCCCC
Q 032812 86 DGRVIVVDYAKPKTSF 101 (133)
Q Consensus 86 ~~~~l~v~~~~~~~~~ 101 (133)
.+..|.|.++....+.
T Consensus 94 ~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 94 QKITLYLNFVEKVQWS 109 (114)
T ss_dssp CEEECEEEEESCCCCS
T ss_pred CCcEEEEEecccCccc
Confidence 6889999999865443
No 138
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=102.33 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-EE
Q 032812 18 CPLCYVAGLSFYT------SNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGR-VI 90 (133)
Q Consensus 18 ~~~l~v~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~-~l 90 (133)
+++|||+|||..+ ++++|+++|..||.|..+.+. +.+|.++|+|||+|.+.++|++|+..|||..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 679999999999999999877 34788999999999999999999999999999998 77
Q ss_pred EE
Q 032812 91 VV 92 (133)
Q Consensus 91 ~v 92 (133)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 139
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=2.2e-17 Score=112.48 Aligned_cols=84 Identities=25% Similarity=0.425 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
....+|||+|||.++++++|+++|..||.|..+.+..+..++..+|+|||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 032812 96 KPKT 99 (133)
Q Consensus 96 ~~~~ 99 (133)
.++.
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8753
No 140
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=8.3e-19 Score=101.40 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=70.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 20 LCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 20 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
+|||+|||+++++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|++|+. +++..++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999988889999999999999999999997 5899999999998864
No 141
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=2.5e-18 Score=105.03 Aligned_cols=81 Identities=26% Similarity=0.486 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
...++|||+|||+++++++|+++|..||.|..+.+..++ ++..+|+|||+|.+.++|++|+. ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 356899999999999999999999999999999999998 99999999999999999999997 999999999999999
Q ss_pred cCCC
Q 032812 96 KPKT 99 (133)
Q Consensus 96 ~~~~ 99 (133)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
No 142
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=107.62 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=76.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQ---VVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVI 90 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 90 (133)
......+|||+|||+++++++|+++|..||. |..+.++.++. |..+|+|||+|.+.++|++|+. +++..++|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3467899999999999999999999999988 89999999885 9999999999999999999998 99999999999
Q ss_pred EEEEecCC
Q 032812 91 VVDYAKPK 98 (133)
Q Consensus 91 ~v~~~~~~ 98 (133)
+|.++.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99988653
No 143
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=103.07 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+..+|||+|||+++++++|+++|..| .|..+.++.++ .|..+|+|||+|.+.++|++|+ .+++..++|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35789999999999999999999999 89999999987 4889999999999999999999 699999999999998886
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.4e-18 Score=101.55 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEA-NIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
....++|||+|||+++++++|+++|..||.|..+ .++.++.++ .|||+|.+.++|+.|+..|||..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 477765443 39999999999999999999999999999999
Q ss_pred EecCC
Q 032812 94 YAKPK 98 (133)
Q Consensus 94 ~~~~~ 98 (133)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99876
No 145
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=6.9e-18 Score=112.87 Aligned_cols=82 Identities=27% Similarity=0.431 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
...++|||+|||+++++++|+++|..||.|..|.+..+. ++..+|+|||+|.+.++|++|+..|++..++|+.|+|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred cCC
Q 032812 96 KPK 98 (133)
Q Consensus 96 ~~~ 98 (133)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 753
No 146
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=111.81 Aligned_cols=84 Identities=27% Similarity=0.379 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEE------EEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEA------NIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGR 88 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~------~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~ 88 (133)
..++++|||+|||+++++++|+++|..||.|..+ .+.. ..++..+|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4578999999999999999999999999988663 1111 12678899999999999999999999999999999
Q ss_pred EEEEEEecCCC
Q 032812 89 VIVVDYAKPKT 99 (133)
Q Consensus 89 ~l~v~~~~~~~ 99 (133)
.|.|.++++..
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997643
No 147
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=9.7e-18 Score=109.13 Aligned_cols=79 Identities=27% Similarity=0.431 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....++|||+|||+++++++|+++|..||.|.++.++.+ ++|+|||+|.+.++|..|+..|||..++|+.|+|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356799999999999999999999999999999998765 478999999999999999999999999999999999
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9875
No 148
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=103.66 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
..++|||+|||+++++++|+++|..||.|..+.+.. .+++|||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998753 45799999999999999999999999999999999997
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 149
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=3.4e-17 Score=110.17 Aligned_cols=84 Identities=20% Similarity=0.437 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
....+|||+|||.++++++|+++|..||.|..+.+..+..++..+|+|||+|.+.++|.+|+..|+|..++|+.|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCC
Q 032812 96 KPKT 99 (133)
Q Consensus 96 ~~~~ 99 (133)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 150
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=1.2e-18 Score=112.35 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....++|||+|||+++++++|+++|..|| +..+.++.++. +.++|+|||+|.+.++|++|+ .+++..++++.|+|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 35678999999999999999999999999 77999999874 899999999999999999999 7899999999999999
Q ss_pred ecCCCC
Q 032812 95 AKPKTS 100 (133)
Q Consensus 95 ~~~~~~ 100 (133)
+..+..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876554
No 151
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=2.8e-17 Score=110.42 Aligned_cols=86 Identities=30% Similarity=0.549 Sum_probs=78.3
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
....+.++|||+|||+++++++|+++|..||.|.++.++.++.++.++|+|||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3445789999999999999999999999999999999999988899999999999999999999975 999999999999
Q ss_pred EEecCCC
Q 032812 93 DYAKPKT 99 (133)
Q Consensus 93 ~~~~~~~ 99 (133)
.++..+.
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987643
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=4.7e-17 Score=96.94 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
...++|||+|||+++++++|+++|..| .|..+.+. ..+|+|||+|.+.++|++|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99998874 46799999999999999999999999999999999999
Q ss_pred cCCC
Q 032812 96 KPKT 99 (133)
Q Consensus 96 ~~~~ 99 (133)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=1.3e-17 Score=104.19 Aligned_cols=76 Identities=25% Similarity=0.338 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE-----E
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRV-----I 90 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~-----l 90 (133)
....+|||+|||+++++++|+++|..||.|..+.++.+ |+|||+|.+.++|++|+..||+..++|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999988654 89999999999999999999999999987 7
Q ss_pred EEEEecCC
Q 032812 91 VVDYAKPK 98 (133)
Q Consensus 91 ~v~~~~~~ 98 (133)
+|..+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776654
No 154
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-16 Score=97.06 Aligned_cols=78 Identities=24% Similarity=0.413 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|+ ++++++|+++|..||.|..+.+. ..+|+|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 457799999996 89999999999999999999884 3568999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032812 95 AKPKTS 100 (133)
Q Consensus 95 ~~~~~~ 100 (133)
+.++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987543
No 155
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=4.4e-17 Score=107.41 Aligned_cols=80 Identities=21% Similarity=0.451 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
....+|||+|||.++++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|||..++|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999987
No 156
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=8.2e-17 Score=101.75 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=68.7
Q ss_pred CCCCCe--EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeCC--eE
Q 032812 15 NHFCPL--CYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGF-GFVTFASHEEAEKALSEMNGKTLDG--RV 89 (133)
Q Consensus 15 ~~~~~~--l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~~--~~ 89 (133)
..++.+ |||+||++.+++++|+++|+.||.|.++.+... .|+ |||+|.+.++|.+|+..|||..|.| +.
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred CCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 344555 568999999999999999999999999988642 275 9999999999999999999999987 69
Q ss_pred EEEEEecCCC
Q 032812 90 IVVDYAKPKT 99 (133)
Q Consensus 90 l~v~~~~~~~ 99 (133)
|+|.+++++.
T Consensus 94 l~V~~Ak~~~ 103 (124)
T 2e5i_A 94 LKIEYARPTR 103 (124)
T ss_dssp EEEECCSCSC
T ss_pred EEEEEecCCc
Confidence 9999998754
No 157
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=7.3e-17 Score=105.49 Aligned_cols=80 Identities=23% Similarity=0.464 Sum_probs=74.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
++|||+|||.++++++|+++|+.||.|.++.+..++ ++..+|+|||+|.+.++|.+|+..|+|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999887 5779999999999999999999999999999999999999765
Q ss_pred C
Q 032812 99 T 99 (133)
Q Consensus 99 ~ 99 (133)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=105.60 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCe----EEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQV----VEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVI 90 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 90 (133)
..+..+|||+|||+++++++|+++|..||.| ..+.++.+. +|+.+|+|||+|.+.++|++|+.. ++..++++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999975 688888885 899999999999999999999985 9999999999
Q ss_pred EEEEecC
Q 032812 91 VVDYAKP 97 (133)
Q Consensus 91 ~v~~~~~ 97 (133)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 159
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=1e-16 Score=101.90 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeCC--eEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGF-GFVTFASHEEAEKALSEMNGKTLDG--RVIVV 92 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~~--~~l~v 92 (133)
+.--.|||+||++.+++++|+++|+.||.|.++.+... .+|+ |||+|.+.++|++|+..|||..+.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34456679999999999999999999999999987653 2467 9999999999999999999999988 89999
Q ss_pred EEecCC
Q 032812 93 DYAKPK 98 (133)
Q Consensus 93 ~~~~~~ 98 (133)
.+++++
T Consensus 101 ~~ak~~ 106 (130)
T 3zzy_A 101 DFSKLT 106 (130)
T ss_dssp EECSCS
T ss_pred EecCCC
Confidence 999865
No 160
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=4.6e-17 Score=107.14 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG--RVIVVD 93 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~--~~l~v~ 93 (133)
+....|||+||++.+++++|+++|+.||.|.++.+.... .+++|||+|.+.++|++|+..|||..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 345668899999999999999999999999999886442 46899999999999999999999999965 999999
Q ss_pred EecCCC
Q 032812 94 YAKPKT 99 (133)
Q Consensus 94 ~~~~~~ 99 (133)
+++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998753
No 161
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=8.5e-17 Score=96.22 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=67.3
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHhccC-CCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 032812 16 HFCPL-CYVAGLSFYTSNKG----LSDAFSQY-GQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRV 89 (133)
Q Consensus 16 ~~~~~-l~v~~lp~~~~~~~----l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 89 (133)
.++.+ |||+|||+.+++++ |+++|..| |+|.++ ++ |+|||.|.+.++|++|++.|+|..+.|+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34555 99999999999987 55899999 599988 33 89999999999999999999999999999
Q ss_pred EEEEEecCCCCC
Q 032812 90 IVVDYAKPKTSF 101 (133)
Q Consensus 90 l~v~~~~~~~~~ 101 (133)
|+|.+++.++..
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999887654
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=7.1e-17 Score=110.53 Aligned_cols=80 Identities=35% Similarity=0.599 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
...+|||+|||+++++++|+++|..||.|..+.++.+. +..+|+|||+|.+.++|.+|+..|||..++|+.|+|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999875 4478999999999999999999999999999999999997
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 65
No 163
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.5e-17 Score=103.22 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=71.3
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCCe
Q 032812 19 PLCYVAGL----SFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFAS----HEE----AEKALS--EMNGKT 84 (133)
Q Consensus 19 ~~l~v~~l----p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~~~~ 84 (133)
..|||+|| |+.+++.+|+++|+.||+|.++.++.|+.||.++|+|||+|.+ +.+ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788887 789999
Q ss_pred eCCeEEEEEEecC
Q 032812 85 LDGRVIVVDYAKP 97 (133)
Q Consensus 85 ~~~~~l~v~~~~~ 97 (133)
|+|+.|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999997654
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.9e-17 Score=108.72 Aligned_cols=81 Identities=26% Similarity=0.506 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
...+|||+|||.++++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|.+|+. +++..++|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46789999999999999999999999999999999988889999999999999999999997 89999999999999998
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 165
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=2.2e-17 Score=104.74 Aligned_cols=80 Identities=29% Similarity=0.333 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeE--EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVV--EANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
.....+|||+|||+++++++|+++|..| .|. .|.++.++. |..+|+|||+|.+.++|++|+. +++..++|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3467899999999999999999999999 677 899998885 9999999999999999999997 4789999999999
Q ss_pred EEecC
Q 032812 93 DYAKP 97 (133)
Q Consensus 93 ~~~~~ 97 (133)
..+.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.70 E-value=1.5e-16 Score=108.57 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 16 HFCPLCYVAGLS-FYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
.++++|||+||| +.+++++|+++|..||.|.++.++.+ .+|+|||+|.+.++|++|+..|||..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 89999999999999999999998754 368999999999999999999999999999999999
Q ss_pred ecCC
Q 032812 95 AKPK 98 (133)
Q Consensus 95 ~~~~ 98 (133)
++.+
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8754
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=2.2e-16 Score=103.54 Aligned_cols=80 Identities=29% Similarity=0.509 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG--RVIVVD 93 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~--~~l~v~ 93 (133)
....+|||+|||..+++++|+++|..||.|..+.+..+..++..+|+|||+|.+.++|.+|+..|+|..+.| ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 467899999999999999999999999999999999998889999999999999999999999999999987 899998
Q ss_pred Ee
Q 032812 94 YA 95 (133)
Q Consensus 94 ~~ 95 (133)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=1.9e-16 Score=94.63 Aligned_cols=77 Identities=30% Similarity=0.478 Sum_probs=62.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee--CCeEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL--DGRVIV 91 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~~~~l~ 91 (133)
...+..+|||+|||+++++++|+++|+.||.|.++.++.+ ++|+|||+|.+.++|++ +++..+ .|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3467899999999999999999999999999999988763 67999999999999884 466554 599999
Q ss_pred EEEecCCC
Q 032812 92 VDYAKPKT 99 (133)
Q Consensus 92 v~~~~~~~ 99 (133)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998754
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1.3e-16 Score=108.65 Aligned_cols=82 Identities=29% Similarity=0.475 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+.++|||+|||.++++++|+++|..||.|..+.++.+..++..+|+|||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999988889999999999999999999999999999999999998876
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 170
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.6e-17 Score=96.49 Aligned_cols=79 Identities=25% Similarity=0.342 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.+.++|||+|||+++++++|+++|..||.|..+.++.+ .+|+|||+|.+.++|+++.. ....+.+..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 46799999999999999999999999999999988653 67899999999999976432 133458999999999
Q ss_pred cCCCCC
Q 032812 96 KPKTSF 101 (133)
Q Consensus 96 ~~~~~~ 101 (133)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=4.1e-16 Score=101.97 Aligned_cols=80 Identities=36% Similarity=0.617 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE--EEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRV--IVVD 93 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~--l~v~ 93 (133)
....+|||+|||.++++++|+++|..||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|||..+.|+. |+|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 35688999999999999999999999999999999998888999999999999999999999999999999964 7777
Q ss_pred Ee
Q 032812 94 YA 95 (133)
Q Consensus 94 ~~ 95 (133)
+|
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=3.4e-16 Score=103.19 Aligned_cols=79 Identities=24% Similarity=0.354 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---CeEEEEE
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD---GRVIVVD 93 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---~~~l~v~ 93 (133)
...+|||+|||..+++++|+++|..||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..|||..+. +++|+|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 57899999999999999999999999999999999986 6889999999999999999999999998876 3899999
Q ss_pred Eec
Q 032812 94 YAK 96 (133)
Q Consensus 94 ~~~ 96 (133)
++.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=3.3e-16 Score=103.28 Aligned_cols=83 Identities=29% Similarity=0.359 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCeeC---CeEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSD--KSKGFGFVTFASHEEAEKALSEMNGKTLD---GRVI 90 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~---~~~l 90 (133)
++.++|||+|||+++++++|+++|..||.|.++.++.++.++ .++|+|||+|.+.++|++|+..|++..+. +..+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 357899999999999999999999999999999999988676 89999999999999999999999998876 5678
Q ss_pred EEEEecCC
Q 032812 91 VVDYAKPK 98 (133)
Q Consensus 91 ~v~~~~~~ 98 (133)
.+.++...
T Consensus 81 ~~~~~~~~ 88 (175)
T 3nmr_A 81 QMKPADSE 88 (175)
T ss_dssp EEEECGGG
T ss_pred EEcccccc
Confidence 88877643
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=5.8e-16 Score=109.68 Aligned_cols=83 Identities=27% Similarity=0.387 Sum_probs=75.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLS----DAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRV 89 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 89 (133)
...++++|||+|||+++++++|+ ++|..||.|.+|.+.. ++..+|+|||+|.+.++|.+|+..|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34678999999999999999966 8999999999998764 6778999999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 032812 90 IVVDYAKPKT 99 (133)
Q Consensus 90 l~v~~~~~~~ 99 (133)
|+|.+++.+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997654
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=2.6e-16 Score=93.19 Aligned_cols=72 Identities=25% Similarity=0.468 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQY----G-------QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKT 84 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 84 (133)
.+.++|||+|||+++++++|+++|..| | .+.++.+..+ +|+|||+|.+.++|++|+ .|++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999988644 589999999999999999 999999
Q ss_pred eCCeEEEEEE
Q 032812 85 LDGRVIVVDY 94 (133)
Q Consensus 85 ~~~~~l~v~~ 94 (133)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.8e-16 Score=96.43 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVS---DKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
....++|||+|||+++++++|+++|..||.|. +.++.+..+ |.++|+|||+|.+.++|++|+..|+ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35678999999999999999999999999999 877777656 7899999999999999999999884 36676666
Q ss_pred EEEe
Q 032812 92 VDYA 95 (133)
Q Consensus 92 v~~~ 95 (133)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6543
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=3.8e-16 Score=98.36 Aligned_cols=77 Identities=25% Similarity=0.424 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
..+.++|||+|+ ++++++|+++|..||.|..+.+. ..+|+|||+|.+.++|++|+..|+|..+.|+.|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356799999995 69999999999999999999885 3568999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
+.++.
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98754
No 178
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=1.5e-15 Score=93.47 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhccCCCeEEEEEeeCCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 032812 16 HFCPLCYVAGLSF-----YTSNKGLSDAFSQYGQVVEANIVMDRVS-DKSKGFGFVTFASHEEAEKALSEMNGKTLDGRV 89 (133)
Q Consensus 16 ~~~~~l~v~~lp~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 89 (133)
.++++|+|.|+.. +-.+++|++.|++||.|.++.+..++.+ +..+|+|||+|.+.++|.+|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5688999999963 2367899999999999999999887643 578999999999999999999999999999999
Q ss_pred EEEEEecC
Q 032812 90 IVVDYAKP 97 (133)
Q Consensus 90 l~v~~~~~ 97 (133)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=3.4e-16 Score=103.54 Aligned_cols=77 Identities=29% Similarity=0.447 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
...+|||+|||.++++++|+++|..||.|..+ ..++..+|+|||+|.+.++|.+|+..|+|..++|+.|+|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 56899999999999999999999999988766 3478899999999999999999999999999999999999998
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=1.1e-15 Score=103.49 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~ 97 (133)
.++|||+|||+++++++|+++|..||.|..+.+..+. ++..+|+|||+|.+.++|++|+..+ +..++|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4789999999999999999999999999999999887 6889999999999999999999765 5699999999998764
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=2.5e-15 Score=106.52 Aligned_cols=87 Identities=22% Similarity=0.365 Sum_probs=81.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
.......+|||+|||+++++++|+++|..||.|..+.++.+..+|.++|+|||+|.+.++|.+|+..|+|..++|+.|.|
T Consensus 90 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 169 (284)
T 3smz_A 90 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 169 (284)
T ss_dssp EECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred EecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 032812 93 DYAKPKT 99 (133)
Q Consensus 93 ~~~~~~~ 99 (133)
.++.++.
T Consensus 170 ~~a~~~~ 176 (284)
T 3smz_A 170 HWTDAGQ 176 (284)
T ss_dssp EECCGGG
T ss_pred EECCCCC
Confidence 9997654
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=7.9e-16 Score=109.51 Aligned_cols=82 Identities=26% Similarity=0.323 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeeCCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 16 HFCPLCYVAGLSFY-TSNKGLSDAFSQYGQVVEANIVMDRV-SDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 16 ~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
....+|||+|||.. +++++|+++|..||.|..+.+..+.. ++..+|+|||+|.+.++|.+|+ .|||..++|+.|.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45789999999999 99999999999999999999988774 4889999999999999999999 999999999999999
Q ss_pred EecCC
Q 032812 94 YAKPK 98 (133)
Q Consensus 94 ~~~~~ 98 (133)
++.++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99875
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=4.9e-16 Score=101.90 Aligned_cols=80 Identities=29% Similarity=0.583 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
+.++|||+|||+++++++|+++|..||.|.++.++.++.++.++|+|||+|.+.++|.+|+. ++..++|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999998889999999999999999999998 4678999999998876
Q ss_pred CC
Q 032812 97 PK 98 (133)
Q Consensus 97 ~~ 98 (133)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=2.3e-15 Score=106.74 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 032812 16 HFCPLCYVAGLSFYT-SNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~ 94 (133)
....+|||+|||..+ ++++|+++|..||.|..+.+..+. +|..+|+|||+|.+.++|.+|+..|+|..++|+.|+|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 467899999999995 999999999999999999998887 888999999999999999999999999999999999999
Q ss_pred ecCCC
Q 032812 95 AKPKT 99 (133)
Q Consensus 95 ~~~~~ 99 (133)
+.++.
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 98765
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=2.9e-15 Score=106.07 Aligned_cols=77 Identities=23% Similarity=0.329 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD-GRVIVVD 93 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-~~~l~v~ 93 (133)
..++++|||+|||..+++++|+++|..||.|.++.+..++ +|+|||+|.+.++|.+|+..|||..+. |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3467899999999999999999999999999999987543 479999999999999999999999999 9999999
Q ss_pred Eec
Q 032812 94 YAK 96 (133)
Q Consensus 94 ~~~ 96 (133)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=2.4e-15 Score=103.93 Aligned_cols=79 Identities=25% Similarity=0.378 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 15 NHFCPLCYVAGLSF-YTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 15 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
..++++|||+|||+ ++++++|+++|..||.|..+.++.++ +|+|||+|.+.++|++|+..|++..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 46789999999999 99999999999999999999997764 6799999999999999999999999999999999
Q ss_pred EecCC
Q 032812 94 YAKPK 98 (133)
Q Consensus 94 ~~~~~ 98 (133)
++..+
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98754
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1e-15 Score=106.57 Aligned_cols=79 Identities=27% Similarity=0.366 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 032812 15 NHFCPLCYVAGLSFYT---------SNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL 85 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 85 (133)
...+++|||+||+..+ ++++|+++|..||.|.++.++.. +|+|||.|.+.++|+.|+..|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3468999999999998 69999999999999999998753 68999999999999999999999999
Q ss_pred ------------CCeEEEEEEecCCC
Q 032812 86 ------------DGRVIVVDYAKPKT 99 (133)
Q Consensus 86 ------------~~~~l~v~~~~~~~ 99 (133)
.|+.|.|.++....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 188
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-14 Score=89.96 Aligned_cols=84 Identities=21% Similarity=0.362 Sum_probs=70.8
Q ss_pred cCCCCCeEEEcCCCCCCC-----------HHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 032812 14 RNHFCPLCYVAGLSFYTS-----------NKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG 82 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 82 (133)
...++++|+|.||..... +++|+++|..||.|..+.+ .++ ..+|+|||+|.+.++|++|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345789999999944332 4799999999999999955 443 2689999999999999999999999
Q ss_pred CeeCCeEEEEEEecCCCCC
Q 032812 83 KTLDGRVIVVDYAKPKTSF 101 (133)
Q Consensus 83 ~~~~~~~l~v~~~~~~~~~ 101 (133)
..++|+.|+|.++.++...
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999999876543
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=2.9e-15 Score=101.01 Aligned_cols=77 Identities=26% Similarity=0.389 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 17 FCPLCYVAGLSF-YTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 17 ~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
.+++|||+|||+ ++++++|+++|..||.|..+.++.++ +|+|||+|.+.++|+.|+..|+|..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999987654 679999999999999999999999999999999998
Q ss_pred cCC
Q 032812 96 KPK 98 (133)
Q Consensus 96 ~~~ 98 (133)
..+
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=7.4e-15 Score=104.45 Aligned_cols=90 Identities=14% Similarity=0.273 Sum_probs=74.3
Q ss_pred eecccCCCCCeEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 032812 10 VYICRNHFCPLCYVAGLSFYTSNKGLSDAFSQYG-QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGR 88 (133)
Q Consensus 10 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~ 88 (133)
...-......+|||+|||+.+++++|+++|..|| .|..+.++.+. .+..+|+|||+|.+.++|.+|+..|+|..+.|+
T Consensus 109 ~i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 187 (292)
T 2ghp_A 109 EIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY 187 (292)
T ss_dssp ECEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3333345789999999999999999999999999 99999998877 477899999999999999999999999999999
Q ss_pred EEEEEEecCCCC
Q 032812 89 VIVVDYAKPKTS 100 (133)
Q Consensus 89 ~l~v~~~~~~~~ 100 (133)
.|.|.++.++..
T Consensus 188 ~l~v~~a~~~~~ 199 (292)
T 2ghp_A 188 TLVTKVSNPLEK 199 (292)
T ss_dssp ECEEEECCCC--
T ss_pred EEEEEECCCCcc
Confidence 999999876543
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=6.3e-16 Score=102.24 Aligned_cols=84 Identities=26% Similarity=0.306 Sum_probs=71.9
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 032812 14 RNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVD 93 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~ 93 (133)
...+.++|||+|||+++++++|+++|..||.+..+ ++.+..++..+|+|||+|.+.++|.+|+ .|++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 45678999999999999999999999999866552 2333346778999999999999999999 599999999999999
Q ss_pred EecCCC
Q 032812 94 YAKPKT 99 (133)
Q Consensus 94 ~~~~~~ 99 (133)
++..+.
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 997654
No 192
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.58 E-value=1.8e-14 Score=90.32 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHhccCCCeEEEEEeeCCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 032812 17 FCPLCYVAGLSF--YT---SNKGLSDAFSQYGQVVEANIVMDRV----SDKSKGFGFVTFASHEEAEKALSEMNGKTLDG 87 (133)
Q Consensus 17 ~~~~l~v~~lp~--~~---~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 87 (133)
++++|+|.|+-. ++ -+++|++.|.+||.|.++.+..+.. ++..+|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 688999999832 22 3579999999999999999988753 35678999999999999999999999999999
Q ss_pred eEEEEEEecC
Q 032812 88 RVIVVDYAKP 97 (133)
Q Consensus 88 ~~l~v~~~~~ 97 (133)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=7.2e-15 Score=99.04 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYG-QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD-GRVIVVD 93 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-~~~l~v~ 93 (133)
.++.+|||+|||..+++++|+++|..|| .|..+.+..+ .+|+|||+|.+.++|.+|+..|+|..++ |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4588999999999999999999999999 9999988553 2689999999999999999999999999 9999999
Q ss_pred EecCC
Q 032812 94 YAKPK 98 (133)
Q Consensus 94 ~~~~~ 98 (133)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99864
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=7.5e-15 Score=100.16 Aligned_cols=78 Identities=9% Similarity=0.166 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCe--EEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe----E
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQV--VEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGR----V 89 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~----~ 89 (133)
.++++|||+|||+.+++++|+++|+.||.| ..+.+..+. +..+|+|||+|.+.++|.+|+..|||..+.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 356789999999999999999999999998 888887764 45569999999999999999999999999876 4
Q ss_pred EEEEEe
Q 032812 90 IVVDYA 95 (133)
Q Consensus 90 l~v~~~ 95 (133)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 665554
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=1.7e-14 Score=101.46 Aligned_cols=76 Identities=28% Similarity=0.442 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYA 95 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~ 95 (133)
...++|||+|||+++++++|+++|..||.|..+.+..+ +|+|||+|.+.++|..|+..|+|..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45689999999999999999999999999999988543 589999999999999999999999999999999998
Q ss_pred cC
Q 032812 96 KP 97 (133)
Q Consensus 96 ~~ 97 (133)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=2.1e-14 Score=99.22 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYG-QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD-GRVIVVD 93 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-~~~l~v~ 93 (133)
.++.+|||+|||..+++++|+++|..|| .|..+.++.. .+|+|||+|.+.++|.+|+..|+|..++ |+.|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999988543 3579999999999999999999999999 9999999
Q ss_pred EecCC
Q 032812 94 YAKPK 98 (133)
Q Consensus 94 ~~~~~ 98 (133)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99863
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=3.5e-14 Score=99.88 Aligned_cols=85 Identities=33% Similarity=0.366 Sum_probs=75.7
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CeeC---Ce
Q 032812 13 CRNHFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNG-KTLD---GR 88 (133)
Q Consensus 13 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~---~~ 88 (133)
....+..+|||+|||..+++++|+++|..||.|..+.++.+. +|.++|+|||+|.+.++|.+|+..|++ ..+. ++
T Consensus 91 ~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r 169 (261)
T 3sde_A 91 RFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPR 169 (261)
T ss_dssp EECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCC
T ss_pred eecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCc
Confidence 334578899999999999999999999999999999999985 899999999999999999999999955 4444 89
Q ss_pred EEEEEEecCC
Q 032812 89 VIVVDYAKPK 98 (133)
Q Consensus 89 ~l~v~~~~~~ 98 (133)
+|.|.++...
T Consensus 170 ~i~v~~~~~~ 179 (261)
T 3sde_A 170 PVIVEPMEQF 179 (261)
T ss_dssp BCEEEECCCE
T ss_pred eEEEeecccc
Confidence 9999998764
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=3.1e-14 Score=87.46 Aligned_cols=82 Identities=24% Similarity=0.327 Sum_probs=70.2
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHhccCCCeEEEEEeeCCCC--CCcceEEEEEeCCHHHHHHHHHHhCCC
Q 032812 16 HFCPLCYVAGL--SFYTS--------NKGLSDAFSQYGQVVEANIVMDRVS--DKSKGFGFVTFASHEEAEKALSEMNGK 83 (133)
Q Consensus 16 ~~~~~l~v~~l--p~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~ 83 (133)
.+++.|.|.|+ |..+. .++|++.|++||.|.++.+.++..+ +..+|++||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 33333 2689999999999999999887644 357899999999999999999999999
Q ss_pred eeCCeEEEEEEecC
Q 032812 84 TLDGRVIVVDYAKP 97 (133)
Q Consensus 84 ~~~~~~l~v~~~~~ 97 (133)
.++|+.|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998853
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=4.1e-15 Score=91.30 Aligned_cols=72 Identities=28% Similarity=0.481 Sum_probs=63.4
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 032812 23 VAGLSFYTSNKGLSDAF------------SQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVI 90 (133)
Q Consensus 23 v~~lp~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 90 (133)
+.|||+.+++++|++.| ++||.|.++.+..+. ++..+|+|||+|.+.++|.+|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777777776666 999999999998876 57889999999999999999999999999999999
Q ss_pred EEEEe
Q 032812 91 VVDYA 95 (133)
Q Consensus 91 ~v~~~ 95 (133)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=3.2e-14 Score=93.58 Aligned_cols=76 Identities=22% Similarity=0.423 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQY----G-------QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL 85 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 85 (133)
+.++|||+|||+++++++|+++|..| | .+..+.+.. .+|+|||+|.+.++|++|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 677776643 3689999999999999999 8999999
Q ss_pred CCeEEEEEEecCCC
Q 032812 86 DGRVIVVDYAKPKT 99 (133)
Q Consensus 86 ~~~~l~v~~~~~~~ 99 (133)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999886543
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=2.2e-13 Score=91.45 Aligned_cols=75 Identities=23% Similarity=0.479 Sum_probs=65.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQY----G-------QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL 85 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 85 (133)
..++|||+|||+++++++|+++|..| | .|.++.+ +..+|+|||+|.+.++|++|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5666655 334689999999999999999 8999999
Q ss_pred CCeEEEEEEecCC
Q 032812 86 DGRVIVVDYAKPK 98 (133)
Q Consensus 86 ~~~~l~v~~~~~~ 98 (133)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999988754
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.7e-12 Score=78.96 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=62.4
Q ss_pred CCCeEEEcCCC-------CCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 032812 17 FCPLCYVAGLS-------FYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRV 89 (133)
Q Consensus 17 ~~~~l~v~~lp-------~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 89 (133)
....+.|.-.. ..+++++|+++|.+||.|.++.++ +..+|+|||+|.+.++|+.|+..++ .+.++.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~ 81 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNP 81 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSB
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCe
Confidence 34556554332 458899999999999999999886 3578999999999999999998744 467999
Q ss_pred EEEEEecCCCC
Q 032812 90 IVVDYAKPKTS 100 (133)
Q Consensus 90 l~v~~~~~~~~ 100 (133)
|+|.++..+..
T Consensus 82 l~V~~a~~~~~ 92 (100)
T 2d9o_A 82 LKISWLEGQPQ 92 (100)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999986543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=7.1e-13 Score=96.60 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=66.9
Q ss_pred cccCCCCCeEEEcC--CCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---
Q 032812 12 ICRNHFCPLCYVAG--LSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLD--- 86 (133)
Q Consensus 12 ~~~~~~~~~l~v~~--lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~--- 86 (133)
.....++.+|||+| |++.+++++|+++|..||.|.++.+.. .+|||||+|.+.++|++|++.|||..+.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 34467889999998 688999999999999999999886642 4689999999999999999999999883
Q ss_pred Ce--EEEEEEec
Q 032812 87 GR--VIVVDYAK 96 (133)
Q Consensus 87 ~~--~l~v~~~~ 96 (133)
|+ .|.+.+..
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 34 57777764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=7.9e-12 Score=77.75 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 032812 16 HFCPLCYVAGLSFYTS----------NKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL 85 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 85 (133)
.+++.|.|.|+=.--. +++|++.|++||.|.++.+.++. .+|++||+|.+.++|.+|+..|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4577788888733211 24889999999999999886543 479999999999999999999999999
Q ss_pred CCeEEEEEEecC
Q 032812 86 DGRVIVVDYAKP 97 (133)
Q Consensus 86 ~~~~l~v~~~~~ 97 (133)
+|+.|+|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999853
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=6.4e-11 Score=70.15 Aligned_cols=75 Identities=28% Similarity=0.332 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 032812 16 HFCPLCYVAGLSF----YTSN----KGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG 87 (133)
Q Consensus 16 ~~~~~l~v~~lp~----~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 87 (133)
++..+|+|...+. ++.. .+|.+.|..||.+..++++.++ +||+|.+.++|.+|+. |+|..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4566777766652 3333 5889999999999999998765 8999999999999998 99999999
Q ss_pred eEEEEEEecCCC
Q 032812 88 RVIVVDYAKPKT 99 (133)
Q Consensus 88 ~~l~v~~~~~~~ 99 (133)
+.|+|..+.+..
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999998754
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=4.7e-11 Score=74.72 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=66.2
Q ss_pred cCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CCeeCCeE
Q 032812 14 RNHFCPLCYVAGLSFY-TSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFAS-HEEAEKALSEMN--GKTLDGRV 89 (133)
Q Consensus 14 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~--~~~~~~~~ 89 (133)
.-..+..|||+||+.. ++.++|+++|+.||+|..|.++.+.. .|||.|.+ ..+|..|+..|+ +..|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3467899999999999 99999999999999999999977652 49999999 899999999995 67788887
Q ss_pred EEEEEe
Q 032812 90 IVVDYA 95 (133)
Q Consensus 90 l~v~~~ 95 (133)
++++..
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 777653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=8.3e-10 Score=65.70 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=61.8
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 032812 15 NHFCPLCYVAGLSFY-----TSN----KGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTL 85 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 85 (133)
.++..+|+|..++.. +.. .+|.+.|..||.+..++++.++ +||+|.+.++|.+|++ |+|..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 467788888877642 322 5789999999999999998775 9999999999999998 999999
Q ss_pred CCeEEEEEEec
Q 032812 86 DGRVIVVDYAK 96 (133)
Q Consensus 86 ~~~~l~v~~~~ 96 (133)
+|+.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998654
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.01 E-value=1.4e-09 Score=74.51 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=59.1
Q ss_pred CHHHHHHHhccCCCeEEEEEeeCC----CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 31 SNKGLSDAFSQYGQVVEANIVMDR----VSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 31 ~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
.+++|.+.|..||.|.++.+..+. .++..+|++||+|.+.++|.+|+..|+|..++|+.|.+.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999987544 345789999999999999999999999999999999999875
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.1e-07 Score=57.78 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC-----CCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQY-----GQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIV 91 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~ 91 (133)
..+++-+-|||..++..-|+.++..+ |.+..+.+..+. +.|+|+|.+...|.+|.-.|+|..|+|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47888899999999999999999999 999999888776 5699999999999999999999999999999
Q ss_pred EEE
Q 032812 92 VDY 94 (133)
Q Consensus 92 v~~ 94 (133)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 874
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.05 E-value=2.5e-05 Score=46.52 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=48.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEM 80 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 80 (133)
+..+.+++ ++|..+...||..+|+.|| ...|.++-+. .|||.|.+++.|..|+..+
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34677778 9999999999999999999 4478888775 7999999999999999865
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.00035 Score=41.98 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=60.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcc-----CCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 032812 15 NHFCPLCYVAGLSFYTSNKGLSDAFSQ-----YGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRV 89 (133)
Q Consensus 15 ~~~~~~l~v~~lp~~~~~~~l~~~f~~-----~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 89 (133)
.....+|.|.|||..+.++.|+-+|+. -|.+..+.... +.|+|+|.+...|+.++.. ..+.+++..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 356789999999999999999999976 24777775522 4689999999999999852 478899999
Q ss_pred EEEEEecCCC
Q 032812 90 IVVDYAKPKT 99 (133)
Q Consensus 90 l~v~~~~~~~ 99 (133)
|.|....++.
T Consensus 76 LsV~P~~~~~ 85 (104)
T 2dhx_A 76 LSLRPAPPRA 85 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEcCCCCC
Confidence 9998765543
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.83 E-value=3.3e-05 Score=46.11 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=47.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 81 (133)
.+.+++ ++|..+...||..+|+.|| ...|.++-+. .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 355677 9999999999999999999 5688888775 79999999999999998764
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.81 E-value=0.00028 Score=41.69 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=60.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCeeCCe-----EEE
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDK--SKGFGFVTFASHEEAEKALSEMNGKTLDGR-----VIV 91 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~~~~~-----~l~ 91 (133)
++|.|++||+.++++++.+.+.....+.....+..+.+.+ ...-|+|.|.+.+++....+.++|..+.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4688999999999999999999988776666655543322 356799999999999999999999987532 344
Q ss_pred EEEec
Q 032812 92 VDYAK 96 (133)
Q Consensus 92 v~~~~ 96 (133)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55554
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=8.4e-05 Score=44.81 Aligned_cols=74 Identities=9% Similarity=0.026 Sum_probs=60.7
Q ss_pred CCeEEEcCCCCCCCH-----HHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 032812 18 CPLCYVAGLSFYTSN-----KGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVV 92 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~-----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v 92 (133)
..+|+|.||+.++-. +.++++|..|+++....+...- .-.-|.|.+.++|.+|-..||+..+.|..++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 467889999887632 4678999999988776654432 24689999999999999999999999999999
Q ss_pred EEecC
Q 032812 93 DYAKP 97 (133)
Q Consensus 93 ~~~~~ 97 (133)
-++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99873
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.37 E-value=0.0013 Score=40.55 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=56.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-eEEEEEE
Q 032812 16 HFCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDG-RVIVVDY 94 (133)
Q Consensus 16 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~-~~l~v~~ 94 (133)
...+-|.|-++|... .+.+...|..||.|.+.... ....+-.|.|.+..+|++|+. .||..+++ -.|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 346778888999875 56778889999999888651 234789999999999999996 59999985 5666665
Q ss_pred e
Q 032812 95 A 95 (133)
Q Consensus 95 ~ 95 (133)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.96 E-value=0.003 Score=37.55 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=54.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCeeCCe-----E
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDK--SKGFGFVTFASHEEAEKALSEMNGKTLDGR-----V 89 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~~~~~-----~ 89 (133)
..-+|.|+.||+.++++++.+.+...-.+.....+..+.+.+ .-.-|+|.|.+.++.....+..+|..+.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356788999999999999888887655432222222221111 234589999999999999999999877532 4
Q ss_pred EEEEEec
Q 032812 90 IVVDYAK 96 (133)
Q Consensus 90 l~v~~~~ 96 (133)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4555554
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.27 E-value=0.016 Score=36.29 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=53.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEee------------CCCCC-CcceEEEEEeCCHHHHHHHHHHhCCC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVE-ANIVM------------DRVSD-KSKGFGFVTFASHEEAEKALSEMNGK 83 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~------------~~~~~-~~~g~afv~f~~~~~a~~a~~~l~~~ 83 (133)
..-|.|-++|.+.. ..+-+.|++||.|.+ ..... .+.-. .+..|..|.|.+..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45566778987665 456678999999866 21110 00000 145789999999999999996 6999
Q ss_pred eeCCeEEEEEEec
Q 032812 84 TLDGRVIVVDYAK 96 (133)
Q Consensus 84 ~~~~~~l~v~~~~ 96 (133)
.++|.-|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999987777653
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.97 E-value=0.0062 Score=46.00 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=41.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHH
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALS 78 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 78 (133)
.+.|+|. .|...++.+|.++|.+||.|..+.+..+. | .+|.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 4889997 79999999999999999999999776543 3 699999999999887653
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.41 E-value=0.021 Score=36.35 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=28.0
Q ss_pred EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 032812 48 ANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKT 84 (133)
Q Consensus 48 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 84 (133)
+.++++. ...+|++||+|.+.++|++|+..+++..
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 4556654 3588999999999999999998887643
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.89 E-value=0.021 Score=36.06 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=36.3
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEEEEEecC
Q 032812 56 SDKSKGFGFVTFASHEEAEKALSEM-NGKTLDGRVIVVDYAKP 97 (133)
Q Consensus 56 ~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~l~v~~~~~ 97 (133)
...-+|+++++|.+.++|++|+..+ ||..++| .+.+.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3456899999999999999999999 9999999 999987764
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.41 E-value=0.35 Score=36.92 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMN 81 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 81 (133)
...++++ +|..+...+|.+.|+.||.+ ++.++-+. .|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4566665 88899999999999999954 66665543 69999999999999999885
No 222
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=65.61 E-value=18 Score=21.30 Aligned_cols=65 Identities=8% Similarity=0.134 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHhc-cCCCeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q 032812 25 GLSFYTSNKGLSDAFS-QYGQVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAKPK 98 (133)
Q Consensus 25 ~lp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~~~ 98 (133)
.++.-+..++|..-.. .||.-.++..... ...|-..+.++..+|++.|+.. ...+.|+|-...++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 3577788888876665 6998888876522 2678899999999999987654 33344555544443
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=42.14 E-value=40 Score=18.04 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=34.8
Q ss_pred CCCHHHHHHHhcc-CC----CeEEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 032812 29 YTSNKGLSDAFSQ-YG----QVVEANIVMDRVSDKSKGFGFVTFASHEEAEKALSEMNGKTLDGRVIVVDYAK 96 (133)
Q Consensus 29 ~~~~~~l~~~f~~-~g----~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~v~~~~ 96 (133)
.+...+|..++.. .| .|-.+.+.. .+.||+... ..+..++..|++..+.|+.+.++.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3455566555553 33 444555522 257888875 45677888899999999998887653
No 224
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=27.54 E-value=49 Score=22.79 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=24.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEE
Q 032812 18 CPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANI 50 (133)
Q Consensus 18 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~ 50 (133)
...+.|+|+|++++...|..++.. ..+....+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356779999999999999999977 55554444
No 225
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.52 E-value=27 Score=24.19 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=25.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEee
Q 032812 19 PLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVM 52 (133)
Q Consensus 19 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~ 52 (133)
....|+|||++++...|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4567999999999999999997655555554433
No 226
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=29.00 E-value=17 Score=21.51 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=35.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeeCCCCCCc-ceEEEEEeCCHHHHHHHHHHhCC
Q 032812 17 FCPLCYVAGLSFYTSNKGLSDAFSQYGQVVEANIVMDRVSDKS-KGFGFVTFASHEEAEKALSEMNG 82 (133)
Q Consensus 17 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~~ 82 (133)
...+|.+.... +.+++..+....+ +..+.+......|+. --.-+-.|.+.++|.+|+..|..
T Consensus 24 ~~YTLQL~a~~---~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 24 SHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 34556555443 4566777777665 333444443323322 11234578899999999987753
No 227
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.70 E-value=1.8e+02 Score=18.78 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=25.8
Q ss_pred CHHHHHHHh--ccCCCeEEEEEeeCCCCCCcceEEEEEeCCH
Q 032812 31 SNKGLSDAF--SQYGQVVEANIVMDRVSDKSKGFGFVTFASH 70 (133)
Q Consensus 31 ~~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~ 70 (133)
...+|++.| ..|..+.-. ..... ..++|+|.|.|.+-
T Consensus 34 s~~~l~~~~~~~~F~p~kv~-~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 34 SGSKLRDEYILRGFNPTRVR-PLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp CSHHHHHHHHHTTCCCSEEE-EEECS--SBEEEEEEEECCSS
T ss_pred CHHHHHHHHHhcCCCCceeE-ecccC--CCCceeEEEEecCC
Confidence 447888866 889877533 33333 34789999999873
Done!