BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032813
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/63 (79%), Positives = 56/63 (88%)
Query: 1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
MTEAGPVL+MCL FAK+PF K G+CGTVVRNAE+K++DPE GASLP NQPGEICIRG Q
Sbjct: 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQ 391
Query: 61 IMK 63
IMK
Sbjct: 392 IMK 394
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/63 (77%), Positives = 56/63 (88%)
Query: 1 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQ 60
MTEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+ G SL NQPGEICIRG Q
Sbjct: 379 MTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQ 438
Query: 61 IMK 63
IMK
Sbjct: 439 IMK 441
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
K G+CG VV K++D + G +L NQ GE+C++GP IMK
Sbjct: 393 KPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMK 434
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
K G+ G VV E KV+D + G +L NQ GE+C+RGP IM
Sbjct: 358 KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 398
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
K G+ G VV E KV+D + G +L NQ GE+C+RGP IM
Sbjct: 358 KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 398
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
K G+ G VV E KV+D + G +L NQ GE+C+RGP IM
Sbjct: 363 KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 403
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
K G+ G VV E KV+D + G +L NQ GE+ +RGP IM
Sbjct: 363 KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIM 403
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
K G+ G VV + KVID + SL N+ GE+C++GP +MK
Sbjct: 360 KPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK 401
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
K G+ G VV + KVID + SL N+ GE+C++GP +MK
Sbjct: 360 KPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK 401
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
K G+ G VV + KVID + SL N+ GE+C++GP +MK
Sbjct: 360 KPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK 401
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 22 KSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
KS + G + ELKVI E G L + GEI IRGP I K
Sbjct: 354 KSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFK 395
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 34.3 bits (77), Expect = 0.023, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 24 GSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIMK 63
G+ G + +V DPE G LP G I ++GP + K
Sbjct: 320 GAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFK 359
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 24 GSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQI 61
G+ G + +V DPE G LP G I + GP +
Sbjct: 320 GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 24 GSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQI 61
G+ G + +V DPE G LP G I + GP +
Sbjct: 320 GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 24 GSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQI 61
G+ G + +V DPE G LP G I + GP +
Sbjct: 320 GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
>pdb|2Q62|A Chain A, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|B Chain B, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|C Chain C, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|D Chain D, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|E Chain E, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|F Chain F, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|G Chain G, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|H Chain H, Crystal Structure Of Arsh From Sinorhizobium Meliloti
Length = 247
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 33 AELKVIDPEIGASLPHNQPGEICIRGPQIMKVAELEFWSDG 73
AE+KV DP G LP P + P++ ++ EL WS+G
Sbjct: 66 AEVKVFDPS-GLPLPDAAP----VSHPKVQELRELSIWSEG 101
>pdb|2XE1|A Chain A, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
Length = 354
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 90 SLGWASKAQA--EPGRWAFDLALRTRAGYELKKRKKVWV 126
SLGWA+KAQ ++ FD LR Y K K + V
Sbjct: 253 SLGWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGV 291
>pdb|2J1N|A Chain A, Osmoporin Ompc
pdb|2J1N|B Chain B, Osmoporin Ompc
pdb|2J1N|C Chain C, Osmoporin Ompc
pdb|2J4U|P Chain P, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|Q Chain Q, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|R Chain R, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|U Chain U, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|V Chain V, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|W Chain W, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2ZLE|D Chain D, Cryo-Em Structure Of Degp12OMP
pdb|3NB3|D Chain D, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
At Specific Sites In The Shigella Phage Sf6 Virion As
Structural Components
pdb|4A8D|M Chain M, Degp Dodecamer With Bound Omp
Length = 346
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 90 SLGWASKAQA--EPGRWAFDLALRTRAGYELKKRKKVWVRFDP 130
SLGWA+KAQ ++ FD LR Y K K + +D
Sbjct: 249 SLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDD 291
>pdb|2XE5|A Chain A, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|B Chain B, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|C Chain C, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|D Chain D, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|E Chain E, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|F Chain F, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
Length = 343
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 90 SLGWASKAQA--EPGRWAFDLALRTRAGYELKKRKKVWVRFDP 130
SLGWA+KAQ ++ FD LR Y K K + +D
Sbjct: 246 SLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDD 288
>pdb|2XE2|A Chain A, Molecular Insights Into Clinically Isolated Ompc20 Mutants
And Their Role In Multi-Drug Resistance
pdb|2XE2|B Chain B, Molecular Insights Into Clinically Isolated Ompc20 Mutants
And Their Role In Multi-Drug Resistance
pdb|2XE2|C Chain C, Molecular Insights Into Clinically Isolated Ompc20 Mutants
And Their Role In Multi-Drug Resistance
Length = 343
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 90 SLGWASKAQA--EPGRWAFDLALRTRAGYELKKRKKVWVRFDP 130
SLGWA+KAQ ++ FD LR Y K K + +D
Sbjct: 246 SLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDD 288
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 11 CLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQP 51
C+ + K+PF K CGT++ + E + + A+L +P
Sbjct: 296 CIVYYKEPFWRKKDYCGTMIIDGE----EAPVAATLDDTKP 332
>pdb|1YQ9|H Chain H, Structure Of The Unready Oxidized Form Of [nife]
Hydrogenase
pdb|1YQ9|I Chain I, Structure Of The Unready Oxidized Form Of [nife]
Hydrogenase
Length = 536
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 3 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
E GP+ S+ + +AK+ PT V+ +L + +G + G RG Q +
Sbjct: 368 EVGPLASVLVAYAKKHEPT--------VKAVDLVLKTLGVGPEALFSTLGRTAARGIQCL 419
Query: 63 KVA-ELEFWSD 72
A E+E W D
Sbjct: 420 TAAQEVEVWLD 430
>pdb|2FRV|L Chain L, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|F Chain F, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|H Chain H, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|J Chain J, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 3 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
E GP+ S+ + +AK+ PT V+ +L + +G + G RG Q +
Sbjct: 368 EVGPLASVLVAYAKKHEPT--------VKAVDLVLKTLGVGPEALFSTLGRTAARGIQCL 419
Query: 63 KVA-ELEFWSD 72
A E+E W D
Sbjct: 420 TAAQEVEVWLD 430
>pdb|1FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|1FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 3 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPEIGASLPHNQPGEICIRGPQIM 62
E GP+ S+ + +AK+ PT V+ +L + +G + G RG Q +
Sbjct: 368 EVGPLASVLVAYAKKHEPT--------VKAVDLVLKTLGVGPEALFSTLGRTAARGIQCL 419
Query: 63 KVA-ELEFWSD 72
A E+E W D
Sbjct: 420 TAAQEVEVWLD 430
>pdb|2XG6|A Chain A, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|B Chain B, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|C Chain C, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|D Chain D, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|E Chain E, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|F Chain F, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
Length = 343
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 90 SLGWASKAQA--EPGRWAFDLALRTRAGYELKKRKKVWVRFDP 130
SLGWA+KAQ ++ FD LR Y K K + +D
Sbjct: 246 SLGWANKAQNFEAVAQYQFDFGLRPFLAYLQSKGKNLGRGYDD 288
>pdb|3SJO|A Chain A, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|B Chain B, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|C Chain C, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|D Chain D, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|E Chain E, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|F Chain F, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|G Chain G, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|H Chain H, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
Length = 190
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 19 FPTKSGSCGTVVRNAELKVIDPEIGAS 45
FPTK+G CG VV + KVI IG +
Sbjct: 141 FPTKAGQCGGVVTSVG-KVIGIHIGGN 166
>pdb|2XE3|A Chain A, Ompc28
pdb|2XE3|B Chain B, Ompc28
Length = 343
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 90 SLGWASKAQA--EPGRWAFDLALRTRAGYELKKRKKVWVRFDP 130
SLGWA+KAQ ++ FD LR Y K K + +D
Sbjct: 246 SLGWANKAQNFEAVAQYQFDFGLRPFLAYLQSKGKNLGRGYDD 288
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 32 NAELKVIDPEIGASL-PHNQPGEICIRGPQIMKVAELEFWSDGGHDEEIIKLNRLTMGSS 90
+ +L+ +D I L P P I I G I + + + GHD I++ N +G
Sbjct: 24 DLKLRYLDVLIDNGLNPPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGR 83
Query: 91 LGWASKAQAEPGRWAFDLALRTRAG 115
+ + EP +A D A AG
Sbjct: 84 IKTFHAKKGEPSPFA-DPAQYAEAG 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,191,485
Number of Sequences: 62578
Number of extensions: 150738
Number of successful extensions: 444
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 34
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)