AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>032814
MTTVETQTAMSQSDKPKNVSTKSSKAQTPSPFKRWGRKHPFVRYGLPMISLTVFGAIGLG
HLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAYKPKNISLEEELKALQEKVDINNYE
YKRIPRPNEGKSG

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT4G14145 AT4G14145 AT4G14145	protein from Arabidopsis thaliana	9.8e-48
BLAST match view associations BLAST with COX16 COX16 COX16 Uncharacterized protein	protein from Sus scrofa	0.00010
BLAST match view associations BLAST with COX16 COX16 COX16 Uncharacterized protein	protein from Canis lupus familiaris	0.00027
BLAST match view associations BLAST with COX16 COX16 COX16 Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial	protein from Bos taurus	0.00045
BLAST match view associations BLAST with Cox16 Cox16 Cox16 cytochrome c oxidase assembly protein 16	protein from Mus musculus	0.00057
BLAST match view associations BLAST with cox16 cox16 cox16 COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	gene_product from Danio rerio	0.00093

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032814
        (133 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504955447 - symbol:AT4G14145 "AT4G14145" speci...   499  9.8e-48   1
UNIPROTKB|F1S4A8 - symbol:COX16 "Uncharacterized protein"...    93  0.00010   1
UNIPROTKB|E2R7F5 - symbol:COX16 "Uncharacterized protein"...    89  0.00027   1
UNIPROTKB|Q2NKS2 - symbol:COX16 "Cytochrome c oxidase ass...    87  0.00045   1
MGI|MGI:1913522 - symbol:Cox16 "cytochrome c oxidase asse...    86  0.00057   1
ZFIN|ZDB-GENE-050417-60 - symbol:cox16 "COX16 cytochrome ...    84  0.00093   1


>TAIR|locus:504955447 [details] [associations]
            symbol:AT4G14145 "AT4G14145" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR020164 Pfam:PF14138 EMBL:CP002687
            GO:GO:0031966 IPI:IPI00539671 EMBL:BT029334 RefSeq:NP_680684.1
            UniGene:At.44741 PaxDb:A0JPW4 PRIDE:A0JPW4
            EnsemblPlants:AT4G14145.1 GeneID:827053 KEGG:ath:AT4G14145
            TAIR:At4g14145 eggNOG:NOG295971 HOGENOM:HOG000234946
            InParanoid:A0JPW4 OMA:INTYEYK PhylomeDB:A0JPW4
            ProtClustDB:CLSN2690295 Genevestigator:A0JPW4 Uniprot:A0JPW4
        Length = 134

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 96/133 (72%), Positives = 108/133 (81%)

Query:     1 MTTVET-QTAMSQSDKPKNVSTKSSKAQTPSPFKRWGRKHPFVRYGLPMISLTVFGAIGL 59
             MTT+ET Q     S      +   +  Q+ + FKRWGR+HPFVRYGLPMISLTVFGA+GL
Sbjct:     1 MTTIETGQKTQKSSPSGSGTTPTGTLKQSSASFKRWGRRHPFVRYGLPMISLTVFGALGL 60

Query:    60 GHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAYKPKNISLEEELKALQEKVDINNY 119
             G LLQGSKDIAKVKDDQEWEIIE RKALSRTGPVDAYKPKN S+E+ELKA+QEKVDIN Y
Sbjct:    61 GQLLQGSKDIAKVKDDQEWEIIETRKALSRTGPVDAYKPKNTSIEDELKAMQEKVDINTY 120

Query:   120 EYKRIPRPNEGKS 132
             EYK+IP+ NE KS
Sbjct:   121 EYKKIPKLNESKS 133


>UNIPROTKB|F1S4A8 [details] [associations]
            symbol:COX16 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0031966 "mitochondrial membrane" evidence=IEA]
            InterPro:IPR020164 Pfam:PF14138 ProDom:PD076120 GO:GO:0031966
            GeneTree:ENSGT00520000055955 OMA:RPWEDSR EMBL:CU695063
            RefSeq:XP_003128671.1 UniGene:Ssc.83583 Ensembl:ENSSSCT00000002578
            GeneID:100525232 KEGG:ssc:100525232 Uniprot:F1S4A8
        Length = 106

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 33/101 (32%), Positives = 48/101 (47%)

Query:    29 PSPFKRWGRKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALS 88
             P    R  RK+  +RYG+PM+ L V G+ GL    Q   D  K+K D E E     K L 
Sbjct:     3 PQAVMRAFRKNKTLRYGVPMLLLVVGGSFGLREFSQIRYDAVKIKIDPELE-----KKL- 56

Query:    89 RTGPVDAYKPKNISLEEELKALQEKVDINNYEYKRIPRPNE 129
                     K   +SLE E + +++    ++++  R PRP E
Sbjct:    57 --------KMNKVSLESEYEKIKDST-FDDWKNIRGPRPWE 88


>UNIPROTKB|E2R7F5 [details] [associations]
            symbol:COX16 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0031966 "mitochondrial membrane"
            evidence=IEA] InterPro:IPR020164 Pfam:PF14138 ProDom:PD076120
            GO:GO:0031966 CTD:51241 GeneTree:ENSGT00520000055955 OMA:RPWEDSR
            EMBL:AAEX03005818 RefSeq:NP_001239273.1 UniGene:Cfa.40084
            Ensembl:ENSCAFT00000026318 GeneID:100846976 KEGG:cfa:100846976
            Uniprot:E2R7F5
        Length = 106

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 31/93 (33%), Positives = 46/93 (49%)

Query:    37 RKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAY 96
             RK+  +RYG+PM+ L V G+ GL    Q   D  K+K D E E     K L         
Sbjct:    11 RKNKTLRYGVPMLLLIVGGSFGLREFSQIRYDAVKIKIDPELE-----KKL--------- 56

Query:    97 KPKNISLEEELKALQEKVDINNYEYKRIPRPNE 129
             K   +SLE E + +++    ++++  R PRP E
Sbjct:    57 KMNKVSLESEYEKMKDST-FDDWKNIRGPRPWE 88


>UNIPROTKB|Q2NKS2 [details] [associations]
            symbol:COX16 "Cytochrome c oxidase assembly protein COX16
            homolog, mitochondrial" species:9913 "Bos taurus" [GO:0031966
            "mitochondrial membrane" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] InterPro:IPR020164 Pfam:PF14138
            ProDom:PD076120 GO:GO:0016021 GO:GO:0031966 EMBL:BC111674
            IPI:IPI00725426 RefSeq:NP_001040033.1 UniGene:Bt.55982
            Ensembl:ENSBTAT00000020832 GeneID:615979 KEGG:bta:615979 CTD:51241
            eggNOG:NOG310937 GeneTree:ENSGT00520000055955 HOGENOM:HOG000217274
            HOVERGEN:HBG105488 InParanoid:Q2NKS2 OMA:RPWEDSR OrthoDB:EOG49CQ99
            NextBio:20899891 Uniprot:Q2NKS2
        Length = 107

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 31/93 (33%), Positives = 45/93 (48%)

Query:    37 RKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAY 96
             RK   +RYG+PM+ L V G+ GL    Q   D  K+K D E E     K L         
Sbjct:    11 RKSKTLRYGVPMLLLIVGGSFGLREFSQIRYDAVKIKIDPELE-----KKL--------- 56

Query:    97 KPKNISLEEELKALQEKVDINNYEYKRIPRPNE 129
             K   +SLE E + +++    ++++  R PRP E
Sbjct:    57 KMNKVSLESEYEKIKDST-FDDWKNIRGPRPWE 88


>MGI|MGI:1913522 [details] [associations]
            symbol:Cox16 "cytochrome c oxidase assembly protein 16"
            species:10090 "Mus musculus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0008150
            "biological_process" evidence=ND] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0031966 "mitochondrial membrane" evidence=IEA]
            InterPro:IPR020164 Pfam:PF14138 ProDom:PD076120 MGI:MGI:1913522
            GO:GO:0016021 GO:GO:0005739 GO:GO:0031966 CTD:51241
            GeneTree:ENSGT00520000055955 HOGENOM:HOG000217274
            HOVERGEN:HBG105488 OMA:RPWEDSR OrthoDB:EOG49CQ99 EMBL:AK007450
            EMBL:AK007562 EMBL:AK008486 EMBL:AK040003 EMBL:AK079975
            EMBL:AK082374 EMBL:AK087666 EMBL:AK088794 EMBL:BC005675
            IPI:IPI00133220 IPI:IPI00458085 RefSeq:NP_079737.1
            UniGene:Mm.439970 STRING:Q9CR63 PhosphoSite:Q9CR63 PaxDb:Q9CR63
            PRIDE:Q9CR63 Ensembl:ENSMUST00000002757 Ensembl:ENSMUST00000110340
            GeneID:66272 KEGG:mmu:66272 UCSC:uc007oce.1 eggNOG:NOG241504
            ChiTaRS:COX16 NextBio:321165 Bgee:Q9CR63 CleanEx:MM_1810020G14RIK
            Genevestigator:Q9CR63 GermOnline:ENSMUSG00000021139 Uniprot:Q9CR63
        Length = 106

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 31/93 (33%), Positives = 44/93 (47%)

Query:    37 RKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAY 96
             RK+  +RYG+PM+ L V G+ GL    Q   D   +K D E E     K L         
Sbjct:    11 RKNKTLRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKIDPELE-----KKL--------- 56

Query:    97 KPKNISLEEELKALQEKVDINNYEYKRIPRPNE 129
             K   I+LE E + +++     N++  R PRP E
Sbjct:    57 KVNKITLESEYEKIKDST-FENWKNIRGPRPWE 88


>ZFIN|ZDB-GENE-050417-60 [details] [associations]
            symbol:cox16 "COX16 cytochrome c oxidase assembly
            homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0031966
            "mitochondrial membrane" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0003674 "molecular_function"
            evidence=ND] InterPro:IPR020164 Pfam:PF14138 ProDom:PD076120
            ZFIN:ZDB-GENE-050417-60 GO:GO:0031966 CTD:51241 HOVERGEN:HBG105488
            EMBL:BC092859 IPI:IPI00570270 RefSeq:NP_001017594.1
            UniGene:Dr.40014 GeneID:550257 KEGG:dre:550257 InParanoid:Q568H2
            NextBio:20879520 Uniprot:Q568H2
        Length = 107

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 28/88 (31%), Positives = 49/88 (55%)

Query:    42 VRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAYKPKNI 101
             V+YG+PM+ L V G+ GL    Q   D  K++   +   +EAR        V + K +++
Sbjct:    14 VKYGVPMLLLIVGGSFGLREFTQIRYDAQKIQRKLD-PALEAR--------VKSQK-QSV 63

Query:   102 SLEEELKALQEKVDINNYEYKRIPRPNE 129
              L+EE + L+++ D++ ++  R PRP E
Sbjct:    64 ILQEEYEKLKDQ-DLDGWKNIRGPRPWE 90


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.129   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      133       133   0.00091  102 3  11 23  0.50    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  126 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.72u 0.11s 16.83t   Elapsed:  00:00:00
  Total cpu time:  16.72u 0.11s 16.83t   Elapsed:  00:00:00
  Start:  Fri May 10 04:51:55 2013   End:  Fri May 10 04:51:55 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data