BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032814
         (133 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
 pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
          Length = 1080

 Score = 29.3 bits (64), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)

Query: 81  IEARKALSRTGPVDAYKPKNISLEEELKALQEKVDINNYEYKRI 124
           IEAR        V+ YK  +I LE ++  LQ K+D  N EYK +
Sbjct: 911 IEAR-------SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947


>pdb|4I8I|A Chain A, Crystal Structure Of A Hypothetical Protein (bacuni_01406)
           From Bacteroides Uniformis Atcc 8492 At 1.50 A
           Resolution
          Length = 271

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 66  SKDIAKVKDDQEWEIIEARKALSRTGPVDAYKPKNISLEEELKALQEKV 114
           S  I K   D++W+ I  ++A   +G  D+YK    SL E +  ++E++
Sbjct: 82  SXTIEKALADEKWDYISVQQASPLSGIYDSYKA---SLPELVNYIRERI 127


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.129    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,900,793
Number of Sequences: 62578
Number of extensions: 146553
Number of successful extensions: 277
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 7
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)