BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032814
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2NKS2|COX16_BOVIN Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial
OS=Bos taurus GN=COX16 PE=3 SV=1
Length = 107
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 33 KRWGRKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGP 92
+R RK +RYG+PM+ L V G+ GL Q D K+K D E E
Sbjct: 7 RRALRKSKTLRYGVPMLLLIVGGSFGLREFSQIRYDAVKIKIDPELE------------- 53
Query: 93 VDAYKPKNISLEEELKALQEKVDINNYEYKRIPRPNE 129
K +SLE E + +++ ++++ R PRP E
Sbjct: 54 -KKLKMNKVSLESEYEKIKDST-FDDWKNIRGPRPWE 88
>sp|Q9CR63|COX16_MOUSE Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial
OS=Mus musculus GN=Cox16 PE=2 SV=1
Length = 106
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 37 RKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAY 96
RK+ +RYG+PM+ L V G+ GL Q D +K D E E
Sbjct: 11 RKNKTLRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKIDPELE--------------KKL 56
Query: 97 KPKNISLEEELKALQEKVDINNYEYKRIPRPNE 129
K I+LE E + +++ N++ R PRP E
Sbjct: 57 KVNKITLESEYEKIKDST-FENWKNIRGPRPWE 88
>sp|P0CM84|COX16_CRYNJ Cytochrome c oxidase assembly protein COX16, mitochondrial
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=COX16 PE=3 SV=1
Length = 130
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 37 RKHPFVRYGLPMISLTVFGAIGLGHLLQGSKD-----IAKVKDDQEWEIIEARKALSRTG 91
R+HPF+ +G+P I + V + L Q D + V ++E + R
Sbjct: 22 RRHPFILFGIPFIGIIVGSSFALQAFTQTRYDYQETKVKSVGKEEELGMKSGR------- 74
Query: 92 PVDAYKPKNISLEEELKALQEKVDINNYEYKRIPRP 127
+ I L+EE V ++YE R+PRP
Sbjct: 75 -------RKIDLKEEYYFSMASVSQDDYEPVRVPRP 103
>sp|P0CM85|COX16_CRYNB Cytochrome c oxidase assembly protein COX16, mitochondrial
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=COX16 PE=3 SV=1
Length = 130
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 37 RKHPFVRYGLPMISLTVFGAIGLGHLLQGSKD-----IAKVKDDQEWEIIEARKALSRTG 91
R+HPF+ +G+P I + V + L Q D + V ++E + R
Sbjct: 22 RRHPFILFGIPFIGIIVGSSFALQAFTQTRYDYQETKVKSVGKEEELGMKSGR------- 74
Query: 92 PVDAYKPKNISLEEELKALQEKVDINNYEYKRIPRP 127
+ I L+EE V ++YE R+PRP
Sbjct: 75 -------RKIDLKEEYYFSMASVSQDDYEPVRVPRP 103
>sp|Q75FA7|COX16_ASHGO Cytochrome c oxidase assembly protein COX16, mitochondrial
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=COX16 PE=3 SV=1
Length = 121
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 37 RKHPFVRYGLPMISLTVFGAIGLGHL--LQGSKDIAKVKDDQEWEIIEARKALSRTGPVD 94
R++PF+ YG+P +L G+ L ++ ++ KV+ QE E+++ R
Sbjct: 30 RRNPFLFYGVPFCTLMAVGSYCLSDFTAVKYEREDKKVRSVQEDELVKLRA--------- 80
Query: 95 AYKPKNISLEEELKALQEKVDINNYEYKRIPR-PNEGKS 132
+ + L+EE LQ D ++E R+PR P E ++
Sbjct: 81 --NRRTVDLKEEFYRLQGLAD-QDWEPVRVPRLPGESEN 116
>sp|Q7MGX5|FRDC_VIBVY Fumarate reductase subunit C OS=Vibrio vulnificus (strain YJ016)
GN=frdC PE=3 SV=1
Length = 127
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 33 KRWGRKHPFVRY-------GLPMISLTVFGAIGLGHLLQG 65
+ W + HPF R+ LP+I T+F +GLG L++G
Sbjct: 13 RTWWKDHPFYRFYMLREATVLPLILFTLFLTVGLGSLVKG 52
>sp|Q8DCX3|FRDC_VIBVU Fumarate reductase subunit C OS=Vibrio vulnificus (strain CMCP6)
GN=frdC PE=3 SV=1
Length = 127
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 33 KRWGRKHPFVRY-------GLPMISLTVFGAIGLGHLLQG 65
+ W + HPF R+ LP+I T+F +GLG L++G
Sbjct: 13 RTWWKDHPFYRFYMLREATVLPLILFTLFLTVGLGSLVKG 52
>sp|A7MZ43|FRDC_VIBHB Fumarate reductase subunit C OS=Vibrio harveyi (strain ATCC
BAA-1116 / BB120) GN=frdC PE=3 SV=1
Length = 127
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 33 KRWGRKHPFVRY-------GLPMISLTVFGAIGLGHLLQG 65
+ W + HPF R+ LP+I T+F GLG L++G
Sbjct: 13 RTWWKNHPFYRFYMLREATVLPLILFTIFLTFGLGSLVKG 52
>sp|C3LS87|FRDC_VIBCM Fumarate reductase subunit C OS=Vibrio cholerae serotype O1
(strain M66-2) GN=frdC PE=3 SV=1
Length = 127
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 33 KRWGRKHPFVRY-------GLPMISLTVFGAIGLGHLLQG 65
+ W + HPF R+ LP+I T+F +GLG L++G
Sbjct: 13 RTWWKDHPFYRFYMVREATVLPLILFTLFLTVGLGSLVKG 52
>sp|Q9KNS3|FRDC_VIBCH Fumarate reductase subunit C OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=frdC PE=3
SV=1
Length = 127
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 33 KRWGRKHPFVRY-------GLPMISLTVFGAIGLGHLLQG 65
+ W + HPF R+ LP+I T+F +GLG L++G
Sbjct: 13 RTWWKDHPFYRFYMVREATVLPLILFTLFLTVGLGSLVKG 52
>sp|A5F4Z1|FRDC_VIBC3 Fumarate reductase subunit C OS=Vibrio cholerae serotype O1
(strain ATCC 39541 / Ogawa 395 / O395) GN=frdC PE=3
SV=1
Length = 127
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 33 KRWGRKHPFVRY-------GLPMISLTVFGAIGLGHLLQG 65
+ W + HPF R+ LP+I T+F +GLG L++G
Sbjct: 13 RTWWKDHPFYRFYMVREATVLPLILFTLFLTVGLGSLVKG 52
>sp|Q1DME3|COX16_COCIM Cytochrome c oxidase assembly protein COX16, mitochondrial
OS=Coccidioides immitis (strain RS) GN=COX16 PE=3 SV=1
Length = 137
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 18/101 (17%)
Query: 38 KHPFVRYGLPMISLTVFGAIGL--GHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDA 95
KHPF+ +GLP +SL V G+ L L+ + KV+ + E + AL GP D
Sbjct: 33 KHPFLLFGLPFLSLMVAGSFVLTPATALRYERHDRKVQQVSQQEAL----ALGIKGP-DG 87
Query: 96 YKPKNISL----------EEELKALQEKVDINNYEYKRIPR 126
+I + +EE L K D++N+E KR+ R
Sbjct: 88 DGENDIKMNPRRRVLGSEKEEYYRLMAK-DLDNWEQKRVQR 127
>sp|Q5RCY6|COX16_PONAB Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial
OS=Pongo abelii GN=COX16 PE=3 SV=1
Length = 106
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 37 RKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAY 96
RK+ + YG+PM+ L V G+ GL Q D K K D E E
Sbjct: 11 RKNKTLGYGVPMLLLIVGGSFGLREFSQIRYDAVKSKMDPELE--------------KKL 56
Query: 97 KPKNISLEEELKALQEKVDINNYEYKRIPRPNE 129
K ISLE E + +++ ++++ R PRP E
Sbjct: 57 KENKISLESEYEKIKDS-KFDDWKNIRGPRPWE 88
>sp|Q9P0S2|COX16_HUMAN Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial
OS=Homo sapiens GN=COX16 PE=1 SV=1
Length = 106
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 37 RKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAY 96
RK+ + YG+PM+ L V G+ GL Q D K K D E E
Sbjct: 11 RKNKTLGYGVPMLLLIVGGSFGLREFSQIRYDAVKSKMDPELE--------------KKL 56
Query: 97 KPKNISLEEELKALQEKVDINNYEYKRIPRPNE 129
K ISLE E + +++ ++++ R PRP E
Sbjct: 57 KENKISLESEYEKIKDS-KFDDWKNIRGPRPWE 88
>sp|Q7SI11|COX16_NEUCR Cytochrome c oxidase assembly protein cox-16, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=cox-16 PE=3 SV=1
Length = 114
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 37 RKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAY 96
+KHPF+ +GLP +S+ V G+ +L + I K D++ + + L
Sbjct: 26 KKHPFLLFGLPFMSVIVAGSF----ILTPAAAIRYEKYDRKVRQVSREEELGL-----GQ 76
Query: 97 KPKNISLEEELKALQEKVDINNYEYKRIPR 126
+ + + + EE L K D++N+E KR+ R
Sbjct: 77 RKRRVDIREEYYRLAAK-DLDNWEQKRVER 105
>sp|Q87KY2|FRDC_VIBPA Fumarate reductase subunit C OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=frdC PE=3 SV=1
Length = 127
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 33 KRWGRKHPFVRY-------GLPMISLTVFGAIGLGHLLQG 65
+ W + HPF R+ LP+I T+F GLG L++G
Sbjct: 13 RTWWKNHPFYRFYMLREATVLPLILFTLFLTFGLGCLVKG 52
>sp|B5FBS7|FRDC_VIBFM Fumarate reductase subunit C OS=Vibrio fischeri (strain MJ11)
GN=frdC PE=3 SV=1
Length = 127
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 33 KRWGRKHPFVRY-------GLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARK 85
+ W + HPF R+ LP+I T+ +GLG L++G A D I+ A
Sbjct: 13 RTWWKDHPFYRFYMVREATVLPLIFFTICLLVGLGSLVKGPLAWASWLDFMANPIVVALN 72
Query: 86 ALSRTG 91
++ G
Sbjct: 73 IVALAG 78
>sp|Q5E2B5|FRDC_VIBF1 Fumarate reductase subunit C OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=frdC PE=3 SV=1
Length = 127
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 33 KRWGRKHPFVRY-------GLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARK 85
+ W + HPF R+ LP+I T+ +GLG L++G A D I+ A
Sbjct: 13 RTWWKDHPFYRFYMVREATVLPLIFFTICLLVGLGSLVKGPLAWASWLDFMANPIVVALN 72
Query: 86 ALSRTG 91
++ G
Sbjct: 73 IVALAG 78
>sp|B6EMS0|FRDC_ALISL Fumarate reductase subunit C OS=Aliivibrio salmonicida (strain
LFI1238) GN=frdC PE=3 SV=1
Length = 127
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 33 KRWGRKHPFVRYG-------LPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARK 85
+ W + HPF R+ LP+I T+ +GLG L++G A D I+ A
Sbjct: 13 RTWWKDHPFYRFYMVREATILPLIFFTICLLVGLGSLVKGPLAWASWLDFMANPIVVALN 72
Query: 86 ALSRTG 91
++ G
Sbjct: 73 IVALAG 78
>sp|O15403|MOT7_HUMAN Monocarboxylate transporter 7 OS=Homo sapiens GN=SLC16A6 PE=1 SV=2
Length = 523
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 33 KRWGRKHPFVRYGLPMISLTVFGAIGLGHLLQG--SKDIAKVKDDQEWE-IIEARKALSR 89
+R G ++ + GL +++ +FGA+ ++G S I ++ +E + ++E K +
Sbjct: 175 ERIGWRYSLLFVGLLQLNIVIFGALLRPIFIRGPASPKIVIQENRKEAQYMLENEKTRTS 234
Query: 90 TGPVDA-----YKPKNISLEEELKALQEKVDINNYEYKRIPRPNEGKS 132
+D+ PKN+ L+ L+ K D+ K PRP+E K+
Sbjct: 235 IDSIDSGVELTTSPKNVPTHTNLE-LEPKADMQQVLVKTSPRPSEKKA 281
>sp|B7VHR5|FRDC_VIBSL Fumarate reductase subunit C OS=Vibrio splendidus (strain LGP32)
GN=frdC PE=3 SV=1
Length = 127
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 33 KRWGRKHPFVRY-------GLPMISLTVFGAIGLGHLLQG 65
+ W HPF R+ LP+I T+F GLG L++G
Sbjct: 13 RTWWSNHPFYRFYMLREATVLPLILFTLFLTFGLGSLVKG 52
>sp|Q0UIR3|COX16_PHANO Cytochrome c oxidase assembly protein COX16, mitochondrial
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=COX16 PE=3 SV=2
Length = 116
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Query: 16 PKNVSTKSSKAQTPSP----FKRWGRKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDIAK 71
P S++S A P+ +++ +KHPF+ +GLP ++ V G+ +L + +
Sbjct: 2 PGPFSSRSFAATLPNSIAARYRKQLQKHPFLLFGLPFMATIVAGSF----MLTPATALRY 57
Query: 72 VKDDQEWEIIEARKALSRTGPVDAYKPKNISLEEELKALQEKVDINNYEYKRIPR 126
+ D++ + I +A+ + + +++++E LQ K D+ ++E +R+ R
Sbjct: 58 ERYDRKNQQITQEEAMGLRQ-----ERRKVNMKDEYYRLQAK-DLEDWEQRRVKR 106
>sp|Q9SWR3|MMT1_WOLBI Methionine S-methyltransferase OS=Wollastonia biflora GN=MMT1 PE=1
SV=1
Length = 1088
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 67 KDIAKVKDDQEWEIIEARKALSRTGPVDAYKPKNISLEEELKALQEKVDINN 118
K + + ++ WE+IEAR +S AY KNI LE++ K+D N
Sbjct: 986 KRLKETLENCGWEVIEARGGVSVIAKPSAYLGKNIKLEKDGSTWVTKLDGTN 1037
>sp|P47081|COX16_YEAST Cytochrome c oxidase assembly protein COX16, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=COX16 PE=1 SV=1
Length = 118
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 38 KHPFVRYGLPMISLTVFGAIGLGHLL-----QGSKDIAKVKDDQEWEIIEARK 85
KHPF+ +GLP + V G+ L QG + + ++ ++ +I++ RK
Sbjct: 31 KHPFLFFGLPFCATIVLGSFWLSSFTAIKYEQGDRKVQEINEE---DILKIRK 80
>sp|Q4I8P5|COX16_GIBZE Cytochrome c oxidase assembly protein COX16, mitochondrial
OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=COX16 PE=3 SV=1
Length = 115
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 38 KHPFVRYGLPMISLTVFGAIGL--GHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDA 95
KHPF+ +GLP +++ V G+ L ++ + KV+ + E + R++
Sbjct: 28 KHPFLMFGLPFLTVIVAGSFVLTPATAVRYERYDRKVRQMTKDEELNVRRS--------- 78
Query: 96 YKPKNISLEEELKALQEKVDINNYEYKRIPR 126
+ + ++EE L K D++++E KR+ R
Sbjct: 79 --ARKVDMKEEYYRLAGK-DLDDWEQKRVKR 106
>sp|Q6FW43|COX16_CANGA Cytochrome c oxidase assembly protein COX16, mitochondrial
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=COX16 PE=3 SV=1
Length = 118
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 38 KHPFVRYGLPMISLTVFGAIGLGHLLQ--GSKDIAKVKDDQEWEIIEAR 84
K+PF+ +GLP + V G+ L + Q +D KV++ E EI++ +
Sbjct: 31 KNPFIFFGLPFCGMMVLGSYWLAGISQVKFDRDDQKVQEMNEEEILKMK 79
>sp|P84405|V120_EHV1V Capsid assembly protein 23 OS=Equine herpesvirus 1 (strain V592)
GN=23 PE=3 SV=1
Length = 1020
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 40 PFVRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAYKPK 99
PFV+ GL +++ + + G +++G KD++ + +AL VD+Y PK
Sbjct: 195 PFVQEGLRIVAKKINWILPFGLMVKGYKDMS---------MAPLTRALFLLSLVDSYFPK 245
Query: 100 NISLEEELKAL 110
+ E +KAL
Sbjct: 246 GTATEGSMKAL 256
>sp|P28956|V120_EHV1B Capsid assembly protein 23 OS=Equine herpesvirus 1 (strain Ab4p)
GN=23 PE=3 SV=1
Length = 1020
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 40 PFVRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAYKPK 99
PFV+ GL +++ + + G +++G KD++ + +AL VD+Y PK
Sbjct: 195 PFVQEGLRIVAKKINWILPFGLMVKGYKDMS---------MAPLTRALFLLSLVDSYFPK 245
Query: 100 NISLEEELKAL 110
+ E +KAL
Sbjct: 246 GTATEGSMKAL 256
>sp|Q52ZA1|COX16_PARBD Cytochrome c oxidase assembly protein COX16, mitochondrial
OS=Paracoccidioides brasiliensis (strain Pb18) GN=COX16
PE=2 SV=1
Length = 135
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 38 KHPFVRYGLPMISLTVFGAIGL 59
KHPF+ +GLP IS+ + G+ L
Sbjct: 32 KHPFLLFGLPFISVIIAGSFVL 53
>sp|A1C8Z3|COX16_ASPCL Cytochrome c oxidase assembly protein cox16, mitochondrial
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=cox16 PE=3 SV=2
Length = 134
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 38 KHPFVRYGLPMISLTVFGAIGL--GHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDA 95
KHPF+ +GLP I + V G+ L L+ + KVK + E +E L GP
Sbjct: 33 KHPFLLFGLPFIMVIVAGSFVLTPAAALRYERYDRKVKQLSQEEAME----LGLKGPDGE 88
Query: 96 ----YKPKNISL---EEELKALQEKVDINNYEYKRIPR 126
P+ L EE L K D++N+E KR+ R
Sbjct: 89 EGIRRNPRRRILGDEREEYYRLMAK-DLDNWEQKRVQR 125
>sp|Q60260|Y3504_METJA Uncharacterized protein MJECL04 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJECL04 PE=4 SV=1
Length = 439
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 104 EEELKALQEKVDINNYEY 121
EEELKAL EK+D NN+E+
Sbjct: 6 EEELKALNEKLDSNNFEF 23
>sp|Q9UTK1|COX16_SCHPO Cytochrome c oxidase assembly protein cox16, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox16 PE=3 SV=1
Length = 113
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 22/105 (20%)
Query: 32 FKRWGR----KHPFVRYGLPMIS--LTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARK 85
FK W R K PF+ GLP +S L V+ + I++VK ++ E + K
Sbjct: 6 FKSWYRLQAKKSPFIYVGLPFLSSVLLVWSCLI---------PISQVKFNRRDEQV---K 53
Query: 86 ALSRTGPVDAYKPKN-ISLEEE-LKALQEKVDINN--YEYKRIPR 126
+LSR +D K + + + EE + L +++++ N YE KR+ R
Sbjct: 54 SLSRDAELDIIKRRRKVDVNEEYYRILLDQLNLQNEEYENKRVKR 98
>sp|Q6CK73|COX16_KLULA Cytochrome c oxidase assembly protein COX16, mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=COX16
PE=3 SV=1
Length = 118
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 38 KHPFVRYGLPMISLTVFGAIGLGHL-----------LQGSK--DIAKVKDDQ-EWEIIEA 83
K+PF+ +GLP S+ V G+ L +Q K D+ K+K +Q +++I E
Sbjct: 31 KNPFLWFGLPFCSVIVLGSFWLSEFTAVRYQQKDQKVQEMKEDDLVKMKANQRQFDIKEE 90
Query: 84 RKALSRTGPVDAYKPKNI 101
L G D ++PK I
Sbjct: 91 YYRLQGLGEQD-WEPKRI 107
>sp|Q8BUK6|HOOK3_MOUSE Protein Hook homolog 3 OS=Mus musculus GN=Hook3 PE=1 SV=2
Length = 718
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 82 EARKALSRTGPVDAYKPKNISLEEELKALQEKVDINNYEYKRIPRPNEG 130
E RKA + G ++ YK + + L+ L +K D ++EYKR+ +G
Sbjct: 357 ELRKANAARGQLETYKRQVVELQNRLSDESKKADKLDFEYKRLKEKVDG 405
>sp|Q02440|MYO5A_CHICK Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1
Length = 1829
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 81 IEARKALSRTGPVDAYKPKNISLEEELKALQEKVDINNYEYKRI 124
IEAR V+ YK +I LE ++ LQ K+D N EYK +
Sbjct: 911 IEAR-------SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,928,808
Number of Sequences: 539616
Number of extensions: 1872826
Number of successful extensions: 4959
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 4931
Number of HSP's gapped (non-prelim): 54
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)