Query 032814
Match_columns 133
No_of_seqs 106 out of 158
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14138 COX16: Cytochrome c o 100.0 7.2E-38 1.6E-42 219.2 4.6 80 42-130 1-80 (80)
2 PF08285 DPM3: Dolichol-phosph 86.5 1.5 3.2E-05 31.5 4.4 49 43-91 37-88 (91)
3 PF04246 RseC_MucC: Positive r 62.3 3.2 7E-05 30.5 0.6 23 38-60 69-91 (135)
4 PF12729 4HB_MCP_1: Four helix 61.8 4.9 0.00011 28.2 1.4 30 41-70 9-38 (181)
5 PF06847 Arc_PepC_II: Archaeal 61.2 5.8 0.00012 28.5 1.7 19 40-58 67-85 (93)
6 PF11755 DUF3311: Protein of u 56.8 15 0.00032 24.7 3.0 22 39-61 22-43 (66)
7 PRK10862 SoxR reducing system 54.7 5.2 0.00011 30.8 0.6 21 38-58 76-96 (154)
8 PF14147 Spore_YhaL: Sporulati 46.1 23 0.00049 23.5 2.5 33 46-78 1-33 (52)
9 PF11044 TMEMspv1-c74-12: Plec 41.7 47 0.001 21.7 3.4 24 53-76 17-40 (49)
10 PF03904 DUF334: Domain of unk 34.9 24 0.00052 29.6 1.6 26 41-67 203-228 (230)
11 PF10190 Tmemb_170: Putative t 34.7 29 0.00064 25.7 1.9 24 36-60 34-57 (105)
12 PF04633 Herpes_BMRF2: Herpesv 34.6 29 0.00064 30.7 2.2 21 44-64 157-177 (349)
13 PF15065 NCU-G1: Lysosomal tra 34.1 14 0.0003 32.4 0.1 18 43-60 326-343 (350)
14 PRK10582 cytochrome o ubiquino 33.9 19 0.00042 26.7 0.8 20 41-60 80-99 (109)
15 KOG4841 Dolichol-phosphate man 32.4 55 0.0012 24.0 2.9 46 46-91 44-92 (95)
16 COG2211 MelB Na+/melibiose sym 31.8 16 0.00034 33.2 0.0 22 33-54 77-99 (467)
17 PF02706 Wzz: Chain length det 29.1 16 0.00034 25.9 -0.3 38 31-70 7-44 (152)
18 PF01956 DUF106: Integral memb 28.1 1.5E+02 0.0032 22.4 4.8 30 40-69 6-37 (168)
19 PF13347 MFS_2: MFS/sugar tran 28.1 36 0.00078 28.4 1.6 25 33-57 66-90 (428)
20 KOG3244 Protein involved in ub 27.5 19 0.00041 30.7 -0.2 19 40-60 188-206 (267)
21 PF01581 FARP: FMRFamide relat 26.7 27 0.00059 16.0 0.3 8 38-45 3-10 (11)
22 PRK11462 putative transporter; 26.5 26 0.00056 30.2 0.5 20 33-52 74-94 (460)
23 PRK03577 acid shock protein pr 26.4 57 0.0012 24.3 2.2 16 48-63 4-19 (102)
24 PF06624 RAMP4: Ribosome assoc 26.4 22 0.00047 24.1 -0.0 29 38-66 34-62 (63)
25 PF06374 NDUF_C2: NADH-ubiquin 25.3 75 0.0016 24.0 2.7 45 30-74 39-84 (117)
26 COG5074 t-SNARE complex subuni 24.5 43 0.00094 28.7 1.4 30 29-58 239-268 (280)
27 PF12911 OppC_N: N-terminal TM 24.5 37 0.0008 21.0 0.8 34 31-64 7-40 (56)
28 PHA03255 BDLF3; Provisional 24.1 65 0.0014 26.6 2.3 23 38-60 174-196 (234)
29 PF09769 ApoO: Apolipoprotein 24.0 38 0.00083 25.6 0.9 34 27-61 104-137 (158)
30 PF06796 NapE: Periplasmic nit 23.7 68 0.0015 21.4 2.0 18 44-61 27-44 (56)
31 TIGR03147 cyt_nit_nrfF cytochr 23.6 44 0.00096 25.5 1.2 23 38-60 99-121 (126)
32 PF10550 Toxin_36: Conantokin- 22.9 64 0.0014 16.3 1.3 10 104-113 2-11 (15)
33 KOG2639 Sodium sulfate symport 22.8 45 0.00097 31.8 1.3 22 39-60 654-676 (685)
34 PF07543 PGA2: Protein traffic 22.7 54 0.0012 25.2 1.6 14 49-62 20-33 (140)
35 PRK10144 formate-dependent nit 21.5 51 0.0011 25.1 1.2 23 38-60 99-121 (126)
36 TIGR02973 nitrate_rd_NapE peri 21.5 89 0.0019 19.8 2.1 17 45-61 15-31 (42)
37 TIGR02972 TMAO_torE trimethyla 20.7 93 0.002 20.2 2.1 17 45-61 20-36 (47)
38 KOG4232 Delta 6-fatty acid des 20.4 94 0.002 28.4 2.8 51 18-68 220-275 (430)
No 1
>PF14138 COX16: Cytochrome c oxidase assembly protein COX16
Probab=100.00 E-value=7.2e-38 Score=219.15 Aligned_cols=80 Identities=38% Similarity=0.544 Sum_probs=68.4
Q ss_pred eeecchhHHHHHHHHHHHHHhhhhhhhhhhccchhHHHHHHHHHhhcccCCCCCCCCCcCCHHHHHHHHHhhcCCCCccc
Q 032814 42 VRYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAYKPKNISLEEELKALQEKVDINNYEY 121 (133)
Q Consensus 42 l~fGLPFl~liVgGSfgL~~ftq~RYe~~d~K~~~~~e~~e~~~~L~keg~l~~~~~r~vdLeeEY~rLq~k~d~ddWEn 121 (133)
|+||||||++||||||||++|||+|||++|.|+++..+. +++ +.. ++++++|||||||||||+ +|+|||||
T Consensus 1 l~~GlPf~~liV~GS~gL~~ftq~Rye~~d~k~~~~~~~----e~~---~~~-~~~~~~v~leeEy~rl~~-~d~ddwE~ 71 (80)
T PF14138_consen 1 LRFGLPFLLLIVGGSFGLSEFTQIRYERRDRKVQQDEEE----EAL---KLL-MKNRRKVDLEEEYYRLQQ-KDIDDWEN 71 (80)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhhHHhhcccchhHH----HHH---hcc-ccccCCCCHHHHHHHHHh-cccccccc
Confidence 589999999999999999999999999999999765322 122 111 357899999999999996 69999999
Q ss_pred ccCCCCCCC
Q 032814 122 KRIPRPNEG 130 (133)
Q Consensus 122 kRvPRp~Ed 130 (133)
|||||||||
T Consensus 72 ~RvpRp~ee 80 (80)
T PF14138_consen 72 KRVPRPWEE 80 (80)
T ss_pred ccCCCCCCC
Confidence 999999997
No 2
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=86.49 E-value=1.5 Score=31.50 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=31.3
Q ss_pred eecchhHHHHHHHHHHHHHhhhhhhhhhhccch---hHHHHHHHHHhhcccC
Q 032814 43 RYGLPMISLTVFGAIGLGHLLQGSKDIAKVKDD---QEWEIIEARKALSRTG 91 (133)
Q Consensus 43 ~fGLPFl~liVgGSfgL~~ftq~RYe~~d~K~~---~~~e~~e~~~~L~keg 91 (133)
..=+||.++++.|+|.|...-=.=+.++|.... -.-|+.|++..|.+.|
T Consensus 37 i~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kG 88 (91)
T PF08285_consen 37 IPYLPFYALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKG 88 (91)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 345899999999999998876655556654321 1223444555554444
No 3
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=62.34 E-value=3.2 Score=30.47 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=18.0
Q ss_pred cCCceeecchhHHHHHHHHHHHH
Q 032814 38 KHPFVRYGLPMISLTVFGAIGLG 60 (133)
Q Consensus 38 knpFl~fGLPFl~liVgGSfgL~ 60 (133)
+.-|+-|+||++++++|...+-.
T Consensus 69 ~aa~l~Y~lPll~li~g~~l~~~ 91 (135)
T PF04246_consen 69 KAAFLVYLLPLLALIAGAVLGSY 91 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999998877655533
No 4
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=61.84 E-value=4.9 Score=28.22 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=24.5
Q ss_pred ceeecchhHHHHHHHHHHHHHhhhhhhhhh
Q 032814 41 FVRYGLPMISLTVFGAIGLGHLLQGSKDIA 70 (133)
Q Consensus 41 Fl~fGLPFl~liVgGSfgL~~ftq~RYe~~ 70 (133)
++-||+.++++++.|.+|+..+.++.-...
T Consensus 9 ~~~f~~~~~l~~~~~~~~~~~l~~~~~~~~ 38 (181)
T PF12729_consen 9 ILGFGLIILLLLIVGIVGLYSLSQINQNVE 38 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999998888765443
No 5
>PF06847 Arc_PepC_II: Archaeal Peptidase A24 C-terminus Type II; InterPro: IPR009655 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This region is of unknown function, which is found at the C terminus of archaeal preflagellin aspartic acid signal peptidases []. The preflagellin peptidase is a membrane-bound enzyme topologically similar to its counterpart in the type IV pilus system (prepilin peptidase); the two enzymes utilizing the same catalytic mechanism []. The preflagellin peptidase is required for the removal of the leader peptide from archaeal flagellin []. Preflagellin aspartic acid signal peptidases belong to the MEROPS peptidase family A24B (preflagellin peptidase, clan AD).; GO: 0008233 peptidase activity; PDB: 3S0X_B.
Probab=61.21 E-value=5.8 Score=28.46 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=11.2
Q ss_pred CceeecchhHHHHHHHHHH
Q 032814 40 PFVRYGLPMISLTVFGAIG 58 (133)
Q Consensus 40 pFl~fGLPFl~liVgGSfg 58 (133)
=++-.|||||..|.+|.+.
T Consensus 67 VWVTpgiPFlvpIt~G~ii 85 (93)
T PF06847_consen 67 VWVTPGIPFLVPITAGYII 85 (93)
T ss_dssp EEE-----THHHHHHHHHH
T ss_pred EEEeCCCcCHHHHHHHHHH
Confidence 5778999999999888653
No 6
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=56.82 E-value=15 Score=24.70 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=16.3
Q ss_pred CCceeecchhHHHHHHHHHHHHH
Q 032814 39 HPFVRYGLPMISLTVFGAIGLGH 61 (133)
Q Consensus 39 npFl~fGLPFl~liVgGSfgL~~ 61 (133)
.|.+ +|+||+..-..+++.|+.
T Consensus 22 ~P~v-~G~Pff~~w~~~wv~lts 43 (66)
T PF11755_consen 22 EPTV-FGMPFFYWWQLAWVVLTS 43 (66)
T ss_pred Cccc-cCcHHHHHHHHHHHHHHH
Confidence 5655 999998877777666665
No 7
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=54.73 E-value=5.2 Score=30.79 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.2
Q ss_pred cCCceeecchhHHHHHHHHHH
Q 032814 38 KHPFVRYGLPMISLTVFGAIG 58 (133)
Q Consensus 38 knpFl~fGLPFl~liVgGSfg 58 (133)
+.-|+-|+||++++++|+..+
T Consensus 76 kaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 76 RSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999998875544
No 8
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=46.13 E-value=23 Score=23.51 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhhhhccchhHH
Q 032814 46 LPMISLTVFGAIGLGHLLQGSKDIAKVKDDQEW 78 (133)
Q Consensus 46 LPFl~liVgGSfgL~~ftq~RYe~~d~K~~~~~ 78 (133)
+|+-...|..-..++-+..+|+-..+++.+|++
T Consensus 1 ~PwWvY~vi~gI~~S~ym~v~t~~eE~~~dq~~ 33 (52)
T PF14147_consen 1 IPWWVYFVIAGIIFSGYMAVKTAKEEREIDQEF 33 (52)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 355566666667789999999998888888755
No 9
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=41.74 E-value=47 Score=21.65 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhhhhhhhhccchh
Q 032814 53 VFGAIGLGHLLQGSKDIAKVKDDQ 76 (133)
Q Consensus 53 VgGSfgL~~ftq~RYe~~d~K~~~ 76 (133)
+..++||+-++.+|.=+.+.|...
T Consensus 17 If~~iGl~IyQkikqIrgKkk~KK 40 (49)
T PF11044_consen 17 IFAWIGLSIYQKIKQIRGKKKEKK 40 (49)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHH
Confidence 445589999888887666666543
No 10
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.86 E-value=24 Score=29.62 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=21.1
Q ss_pred ceeecchhHHHHHHHHHHHHHhhhhhh
Q 032814 41 FVRYGLPMISLTVFGAIGLGHLLQGSK 67 (133)
Q Consensus 41 Fl~fGLPFl~liVgGSfgL~~ftq~RY 67 (133)
.+.||||-++ -+||..||-+....|+
T Consensus 203 yi~Y~vPY~~-~ig~~i~l~~~~~~~~ 228 (230)
T PF03904_consen 203 YIAYLVPYIF-AIGLFIYLYEWIRAKF 228 (230)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHh
Confidence 5779999997 7899999988766554
No 11
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=34.71 E-value=29 Score=25.71 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=19.0
Q ss_pred cccCCceeecchhHHHHHHHHHHHH
Q 032814 36 GRKHPFVRYGLPMISLTVFGAIGLG 60 (133)
Q Consensus 36 ~~knpFl~fGLPFl~liVgGSfgL~ 60 (133)
+||||+.+| +|.+.+++|+-..+.
T Consensus 34 lRkhk~~~f-~pi~~l~mg~l~p~~ 57 (105)
T PF10190_consen 34 LRKHKFGRF-IPIVILLMGVLGPLT 57 (105)
T ss_pred Hhhccchhh-hHHHHHHHHHHHHHH
Confidence 578999988 998888888766554
No 12
>PF04633 Herpes_BMRF2: Herpesvirus BMRF2 protein; InterPro: IPR006727 This is a family of unknown function found in the Herpes viruses.
Probab=34.61 E-value=29 Score=30.65 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=18.6
Q ss_pred ecchhHHHHHHHHHHHHHhhh
Q 032814 44 YGLPMISLTVFGAIGLGHLLQ 64 (133)
Q Consensus 44 fGLPFl~liVgGSfgL~~ftq 64 (133)
|=+||.+++++|+++|++|-+
T Consensus 157 f~~Pf~ifl~~G~~~l~~~~~ 177 (349)
T PF04633_consen 157 FMIPFFIFLIGGYYSLRHFRR 177 (349)
T ss_pred HHHHHHHHHHhhHHHHHHHHh
Confidence 447999999999999999865
No 13
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=34.09 E-value=14 Score=32.43 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=14.4
Q ss_pred eecchhHHHHHHHHHHHH
Q 032814 43 RYGLPMISLTVFGAIGLG 60 (133)
Q Consensus 43 ~fGLPFl~liVgGSfgL~ 60 (133)
=+|+|.+++|+||.|.+.
T Consensus 326 gLG~P~l~li~Ggl~v~~ 343 (350)
T PF15065_consen 326 GLGVPLLLLILGGLYVCL 343 (350)
T ss_pred HhhHHHHHHHHhhheEEE
Confidence 478999999999887653
No 14
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=33.87 E-value=19 Score=26.65 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=17.0
Q ss_pred ceeecchhHHHHHHHHHHHH
Q 032814 41 FVRYGLPMISLTVFGAIGLG 60 (133)
Q Consensus 41 Fl~fGLPFl~liVgGSfgL~ 60 (133)
-+.|+++.+.++|+||.+.=
T Consensus 80 al~Ft~~i~~iiv~GSlWIM 99 (109)
T PRK10582 80 AFVFTVLIIAILVVGSIWIM 99 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999864
No 15
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.42 E-value=55 Score=24.04 Aligned_cols=46 Identities=28% Similarity=0.355 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHhh---hhhhhhhhccchhHHHHHHHHHhhcccC
Q 032814 46 LPMISLTVFGAIGLGHLL---QGSKDIAKVKDDQEWEIIEARKALSRTG 91 (133)
Q Consensus 46 LPFl~liVgGSfgL~~ft---q~RYe~~d~K~~~~~e~~e~~~~L~keg 91 (133)
-||++++.+|+|.+-... +.=.|-.+.+++-.-++-|++.+|.+.|
T Consensus 44 ~P~~~~l~~G~Ya~~tv~Y~VATfnDc~eA~veL~~~IkEAr~~L~rkg 92 (95)
T KOG4841|consen 44 WPLYLLLSAGCYALGTVGYRVATFNDCEEAAVELQSQIKEARADLARKG 92 (95)
T ss_pred hHHHHHHHHHhHhhhhheeeeeccCCcHHHHHHHHHHHHHHHHHHHHcc
Confidence 488889999999886432 2223334445544445555666665555
No 16
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=31.78 E-value=16 Score=33.17 Aligned_cols=22 Identities=36% Similarity=1.004 Sum_probs=18.4
Q ss_pred hhccccCCceeec-chhHHHHHH
Q 032814 33 KRWGRKHPFVRYG-LPMISLTVF 54 (133)
Q Consensus 33 ~r~~~knpFl~fG-LPFl~liVg 54 (133)
.||+|.+||+.+| +||.++.++
T Consensus 77 ~r~GrfRP~lL~g~ip~~i~~~l 99 (467)
T COG2211 77 SRWGRFRPWLLWGAIPFAIVAVL 99 (467)
T ss_pred cccccccHHHHHHhHHHHHHHHH
Confidence 6799999999999 888776554
No 17
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=29.08 E-value=16 Score=25.88 Aligned_cols=38 Identities=3% Similarity=-0.069 Sum_probs=2.4
Q ss_pred hhhhccccCCceeecchhHHHHHHHHHHHHHhhhhhhhhh
Q 032814 31 PFKRWGRKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDIA 70 (133)
Q Consensus 31 ~y~r~~~knpFl~fGLPFl~liVgGSfgL~~ftq~RYe~~ 70 (133)
.+-+.+++|.++-.++-++++++|+.|+ .+..-+|+..
T Consensus 7 ~l~~~l~r~~~~i~~~~~l~~~~a~~~~--~~~~~~Y~ss 44 (152)
T PF02706_consen 7 DLLRILWRRKWLIIIVTLLFAILAFIYA--FFAPPQYESS 44 (152)
T ss_dssp ------------------------------------EEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccceEE
Confidence 3456677888876666666555555444 7777777653
No 18
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=28.06 E-value=1.5e+02 Score=22.36 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=19.6
Q ss_pred Ccee-ecchhHHHHHHHHHHHHHhhh-hhhhh
Q 032814 40 PFVR-YGLPMISLTVFGAIGLGHLLQ-GSKDI 69 (133)
Q Consensus 40 pFl~-fGLPFl~liVgGSfgL~~ftq-~RYe~ 69 (133)
|+++ +-+||.++|++-+..-+.+++ +++..
T Consensus 6 p~i~~~~~P~~i~v~~~~~~~~~~s~l~~~~~ 37 (168)
T PF01956_consen 6 PLIRWVLLPITIVVFLIAILRGLISELLQKFL 37 (168)
T ss_pred chHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444 678997777777777766665 44443
No 19
>PF13347 MFS_2: MFS/sugar transport protein
Probab=28.06 E-value=36 Score=28.38 Aligned_cols=25 Identities=32% Similarity=0.833 Sum_probs=19.7
Q ss_pred hhccccCCceeecchhHHHHHHHHH
Q 032814 33 KRWGRKHPFVRYGLPMISLTVFGAI 57 (133)
Q Consensus 33 ~r~~~knpFl~fGLPFl~liVgGSf 57 (133)
.||+|++||+..|.|++.+....-|
T Consensus 66 tr~Grrrp~~l~g~i~~~~~~~llf 90 (428)
T PF13347_consen 66 TRWGRRRPWILIGAILLALSFFLLF 90 (428)
T ss_pred ccccccceEeehhhHHHHHHHHHhh
Confidence 6889999999999887766555544
No 20
>KOG3244 consensus Protein involved in ubiquinone biosynthesis [Coenzyme transport and metabolism]
Probab=27.45 E-value=19 Score=30.74 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=14.0
Q ss_pred CceeecchhHHHHHHHHHHHH
Q 032814 40 PFVRYGLPMISLTVFGAIGLG 60 (133)
Q Consensus 40 pFl~fGLPFl~liVgGSfgL~ 60 (133)
-|+.+|||||. .||.||=.
T Consensus 188 E~~q~GLPMc~--lg~ifG~~ 206 (267)
T KOG3244|consen 188 EGVQMGLPMCI--LGAIFGPV 206 (267)
T ss_pred HHHhcCCchHH--hhhccchh
Confidence 47789999994 66766643
No 21
>PF01581 FARP: FMRFamide related peptide family; InterPro: IPR002544 The neuropeptide Phe-Met-Arg-Phe-NH2 (FMRFamide) is a potent cardioactive neuropeptide in Lymnaea stagnalis []. FMRFamide (Phe-Met-Arg-Phe-NH2) was first demonstrated to be cardioactive in several molluscan species. FMRFamide is now known to be cardioexcitatory in mammals, to inhibit morphine-induced antinociception, and to block morphine-, defeat-, and deprivation-induced feeding []. Thirteen neuropeptides varying in length from 7 to 11 residues and ending C-terminally in -Phe-Met-Arg-Phe-NH2 (calliFMRFamides 1-13) and one dodecapeptide ending in -Met-Ile-Arg-Phe-NH2 (calliMIRFamide 1) have been isolated from thoracic ganglia of the blowfly Calliphora vomitoria. Results indicate that the N terminus (in addition to the C terminus as previously found for FMRFamides of other organisms) is crucial for at least some biological activities [].; GO: 0007218 neuropeptide signaling pathway
Probab=26.69 E-value=27 Score=16.05 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=5.6
Q ss_pred cCCceeec
Q 032814 38 KHPFVRYG 45 (133)
Q Consensus 38 knpFl~fG 45 (133)
++.|++||
T Consensus 3 ~~~~~RFG 10 (11)
T PF01581_consen 3 DNNFMRFG 10 (11)
T ss_pred cccccccC
Confidence 45678887
No 22
>PRK11462 putative transporter; Provisional
Probab=26.48 E-value=26 Score=30.15 Aligned_cols=20 Identities=40% Similarity=0.964 Sum_probs=15.0
Q ss_pred hhccccCCceeec-chhHHHH
Q 032814 33 KRWGRKHPFVRYG-LPMISLT 52 (133)
Q Consensus 33 ~r~~~knpFl~fG-LPFl~li 52 (133)
.||+|++||+.+| +|+.+..
T Consensus 74 ~r~Gr~rp~il~g~i~~~i~~ 94 (460)
T PRK11462 74 SRWGKFRPWVLFGALPFGIVC 94 (460)
T ss_pred CCCCCcchhHhHHHHHHHHHH
Confidence 3789999999999 5655443
No 23
>PRK03577 acid shock protein precursor; Provisional
Probab=26.43 E-value=57 Score=24.28 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHhh
Q 032814 48 MISLTVFGAIGLGHLL 63 (133)
Q Consensus 48 Fl~liVgGSfgL~~ft 63 (133)
.|.+||+|.|||+.|.
T Consensus 4 VLAlvVAa~~glSs~A 19 (102)
T PRK03577 4 VLALVVAAAMGLSSAA 19 (102)
T ss_pred HHHHHHHHHHHhhHHH
Confidence 4789999999999654
No 24
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=26.40 E-value=22 Score=24.09 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=19.7
Q ss_pred cCCceeecchhHHHHHHHHHHHHHhhhhh
Q 032814 38 KHPFVRYGLPMISLTVFGAIGLGHLLQGS 66 (133)
Q Consensus 38 knpFl~fGLPFl~liVgGSfgL~~ftq~R 66 (133)
+.|-=..=|=|++++|.||..|.-+..++
T Consensus 34 k~pVgp~~L~l~iFVV~Gs~ifqiir~i~ 62 (63)
T PF06624_consen 34 KYPVGPWLLGLFIFVVCGSAIFQIIRSIQ 62 (63)
T ss_pred cCCcCHHHHhhhheeeEcHHHHHHHHHHh
Confidence 44443344558899999998887766543
No 25
>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane
Probab=25.25 E-value=75 Score=24.00 Aligned_cols=45 Identities=11% Similarity=-0.000 Sum_probs=29.0
Q ss_pred hhhhhccccCCceeecchhH-HHHHHHHHHHHHhhhhhhhhhhccc
Q 032814 30 SPFKRWGRKHPFVRYGLPMI-SLTVFGAIGLGHLLQGSKDIAKVKD 74 (133)
Q Consensus 30 ~~y~r~~~knpFl~fGLPFl-~liVgGSfgL~~ftq~RYe~~d~K~ 74 (133)
+-+..++.++|+++-|++=- +++.+|.|.-..++..+-...-.|+
T Consensus 39 ~ll~N~~~rRP~~~sGihr~ll~~t~g~~~Gy~~~k~~n~~~A~rD 84 (117)
T PF06374_consen 39 ALLDNAINRRPPLKSGIHRQLLLATIGWFIGYYITKYRNYYYAERD 84 (117)
T ss_pred HHHHHHHhcCCchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888999999999855 4455555555555555544444443
No 26
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=24.54 E-value=43 Score=28.72 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=25.0
Q ss_pred chhhhhccccCCceeecchhHHHHHHHHHH
Q 032814 29 PSPFKRWGRKHPFVRYGLPMISLTVFGAIG 58 (133)
Q Consensus 29 a~~y~r~~~knpFl~fGLPFl~liVgGSfg 58 (133)
|-+|-|.-|+++.+.||+-|++++|.-.|.
T Consensus 239 AvksaRaaRkkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 239 AVKSARAARKKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred HHHHHHHHHhcceehhhhHHHHHHHHHHHH
Confidence 446678889999999999999988877665
No 27
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.54 E-value=37 Score=20.95 Aligned_cols=34 Identities=21% Similarity=0.113 Sum_probs=25.7
Q ss_pred hhhhccccCCceeecchhHHHHHHHHHHHHHhhh
Q 032814 31 PFKRWGRKHPFVRYGLPMISLTVFGAIGLGHLLQ 64 (133)
Q Consensus 31 ~y~r~~~knpFl~fGLPFl~liVgGSfgL~~ftq 64 (133)
.+.+.+++||...+|+=+++++|+-++.-.-|+.
T Consensus 7 ~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 7 DAWRRFRRNKLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445567899999999999888887776655544
No 28
>PHA03255 BDLF3; Provisional
Probab=24.14 E-value=65 Score=26.64 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=18.9
Q ss_pred cCCceeecchhHHHHHHHHHHHH
Q 032814 38 KHPFVRYGLPMISLTVFGAIGLG 60 (133)
Q Consensus 38 knpFl~fGLPFl~liVgGSfgL~ 60 (133)
|.|.+.+|||+-.++..|.-+|-
T Consensus 174 kqps~~~glplwtlvfvgltflm 196 (234)
T PHA03255 174 RQPSLSYGLPLWTLVFVGLTFLM 196 (234)
T ss_pred cCcccccCchHHHHHHHHHHHHH
Confidence 67889999999988888876554
No 29
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=23.99 E-value=38 Score=25.58 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=26.5
Q ss_pred CCchhhhhccccCCceeecchhHHHHHHHHHHHHH
Q 032814 27 QTPSPFKRWGRKHPFVRYGLPMISLTVFGAIGLGH 61 (133)
Q Consensus 27 ~~a~~y~r~~~knpFl~fGLPFl~liVgGSfgL~~ 61 (133)
-++|.+-. -+++.|+|+-.|.++.++++||+|=.
T Consensus 104 glaGsIla-r~r~~~~R~~~P~~~g~~~~~~~~P~ 137 (158)
T PF09769_consen 104 GLAGSILA-RRRGIFKRFLYPLAFGGAAASYCYPQ 137 (158)
T ss_pred hhheeeee-ccCcchhhhHHHHHHHHHHhHhcCcH
Confidence 34554444 45899999999999999999999854
No 30
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=23.70 E-value=68 Score=21.41 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=15.3
Q ss_pred ecchhHHHHHHHHHHHHH
Q 032814 44 YGLPMISLTVFGAIGLGH 61 (133)
Q Consensus 44 fGLPFl~liVgGSfgL~~ 61 (133)
+-.|.++..+.|.||+.-
T Consensus 27 ~l~PiL~v~~Vg~YGF~V 44 (56)
T PF06796_consen 27 VLFPILAVAFVGGYGFIV 44 (56)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346999999999999875
No 31
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=23.62 E-value=44 Score=25.47 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=16.8
Q ss_pred cCCceeecchhHHHHHHHHHHHH
Q 032814 38 KHPFVRYGLPMISLTVFGAIGLG 60 (133)
Q Consensus 38 knpFl~fGLPFl~liVgGSfgL~ 60 (133)
..-.+....||+++++||.+.+.
T Consensus 99 ~~t~~LW~~P~lll~~G~~~~~~ 121 (126)
T TIGR03147 99 WQTLLLWLLPVLLLLLAFVLLWR 121 (126)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 34456678999999888876544
No 32
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=22.87 E-value=64 Score=16.33 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=7.5
Q ss_pred HHHHHHHHhh
Q 032814 104 EEELKALQEK 113 (133)
Q Consensus 104 eeEY~rLq~k 113 (133)
||||.+|...
T Consensus 2 eee~~km~~~ 11 (15)
T PF10550_consen 2 EEEVAKMAAE 11 (15)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 6889888653
No 33
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=22.80 E-value=45 Score=31.84 Aligned_cols=22 Identities=27% Similarity=0.470 Sum_probs=16.4
Q ss_pred CCceeecchhHHH-HHHHHHHHH
Q 032814 39 HPFVRYGLPMISL-TVFGAIGLG 60 (133)
Q Consensus 39 npFl~fGLPFl~l-iVgGSfgL~ 60 (133)
..||++|+|+|+. ++.|++.|-
T Consensus 654 ~~fF~~GfPmml~si~i~t~yLl 676 (685)
T KOG2639|consen 654 TQFFKVGFPMMLGSITIGTVYLL 676 (685)
T ss_pred hhHHHhcccHHHHHHHHHHHHHH
Confidence 5689999998764 556777664
No 34
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=22.72 E-value=54 Score=25.17 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHh
Q 032814 49 ISLTVFGAIGLGHL 62 (133)
Q Consensus 49 l~liVgGSfgL~~f 62 (133)
|++||||.+.|++.
T Consensus 20 LViIVggYiLlRPY 33 (140)
T PF07543_consen 20 LVIIVGGYILLRPY 33 (140)
T ss_pred hhhhhhHHHHHHHH
Confidence 57899999999986
No 35
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=21.54 E-value=51 Score=25.14 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=16.3
Q ss_pred cCCceeecchhHHHHHHHHHHHH
Q 032814 38 KHPFVRYGLPMISLTVFGAIGLG 60 (133)
Q Consensus 38 knpFl~fGLPFl~liVgGSfgL~ 60 (133)
..-++....|++++++||.+.+.
T Consensus 99 ~~t~~LW~~P~~lll~g~~~~~~ 121 (126)
T PRK10144 99 GQTLVLWALPVVLLLLMALILWR 121 (126)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 44566778999988877766543
No 36
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=21.52 E-value=89 Score=19.79 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.7
Q ss_pred cchhHHHHHHHHHHHHH
Q 032814 45 GLPMISLTVFGAIGLGH 61 (133)
Q Consensus 45 GLPFl~liVgGSfgL~~ 61 (133)
-.|.++..+.|+||+.-
T Consensus 15 l~PiLsV~~V~~YGF~v 31 (42)
T TIGR02973 15 IWPVLSVITVGGYGFAV 31 (42)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46999999999999875
No 37
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=20.68 E-value=93 Score=20.15 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.7
Q ss_pred cchhHHHHHHHHHHHHH
Q 032814 45 GLPMISLTVFGAIGLGH 61 (133)
Q Consensus 45 GLPFl~liVgGSfgL~~ 61 (133)
-.|.++..+.|.||+.-
T Consensus 20 l~PiLsV~~Vg~YGF~v 36 (47)
T TIGR02972 20 LFPILSVAGIGGYGFII 36 (47)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46999999999999875
No 38
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=20.36 E-value=94 Score=28.36 Aligned_cols=51 Identities=14% Similarity=-0.082 Sum_probs=38.1
Q ss_pred CCCccccCCCCchhhhhccccC-----CceeecchhHHHHHHHHHHHHHhhhhhhh
Q 032814 18 NVSTKSSKAQTPSPFKRWGRKH-----PFVRYGLPMISLTVFGAIGLGHLLQGSKD 68 (133)
Q Consensus 18 ~~~~~~~~~~~a~~y~r~~~kn-----pFl~fGLPFl~liVgGSfgL~~ftq~RYe 68 (133)
+..+.-+++..+++++|.+.-- -|+++|.||+.++..|-+.+--.+..-+.
T Consensus 220 ~fl~g~~~~~~~~k~krk~~~~~~qh~yf~~~~~p~l~~~~~~~~~~~~~~~~~~w 275 (430)
T KOG4232|consen 220 AFLLGDPNSHEYGKKKRKYTPYPEQHLYFFLIGPPFLRLMWFQQSIIFVQTNLLLW 275 (430)
T ss_pred hhhhCCCchhhhcccceeEeecccceEEEEeccchHHHHHHHHHHHHHHHhHHHHH
Confidence 5666677778888888877522 25668999999999998888777765543
Done!