Query 032814
Match_columns 133
No_of_seqs 106 out of 158
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:54:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2klu_A T-cell surface glycopro 40.9 16 0.00054 24.6 2.2 18 46-63 7-24 (70)
2 2p06_A Hypothetical protein AF 18.8 33 0.0011 24.4 0.6 19 105-123 67-85 (114)
3 4djc_B Sodium channel protein 18.5 77 0.0026 18.0 2.1 22 106-128 6-27 (35)
4 2k5c_A Uncharacterized protein 17.3 34 0.0012 24.0 0.5 22 104-125 72-93 (95)
5 2lom_A HIG1 domain family memb 21.0 31 0.001 24.0 0.0 36 26-63 14-49 (93)
6 3s0x_A Peptidase A24B, FLAK do 14.7 69 0.0024 25.4 1.7 21 38-58 202-222 (237)
7 3cx5_I Cytochrome B-C1 complex 14.7 1.2E+02 0.0041 19.6 2.6 25 31-61 5-29 (65)
8 3nrx_A Protein regulator of cy 14.5 61 0.0021 23.5 1.3 16 38-53 82-97 (130)
9 2guz_B Mitochondrial import in 12.0 19 0.00063 23.2 -2.0 37 23-69 19-55 (65)
10 2lon_A HIG1 domain family memb 15.4 50 0.0017 23.1 0.0 43 17-62 7-49 (99)
No 1
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=40.88 E-value=16 Score=24.60 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=12.7
Q ss_pred chhHHHHHHHHHHHHHhh
Q 032814 46 LPMISLTVFGAIGLGHLL 63 (133)
Q Consensus 46 LPFl~liVgGSfgL~~ft 63 (133)
-|++++++||+++|--|+
T Consensus 7 ~p~~LivlGg~~~lll~~ 24 (70)
T 2klu_A 7 GSMALIVLGGVAGLLLFI 24 (70)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHH
Confidence 466767888888776554
No 2
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=18.75 E-value=33 Score=24.36 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=13.1
Q ss_pred HHHHHHHhhcCCCCccccc
Q 032814 105 EELKALQEKVDINNYEYKR 123 (133)
Q Consensus 105 eEY~rLq~k~d~ddWEnkR 123 (133)
||...|...+.-+||||.|
T Consensus 67 eemdelreavekedwenlr 85 (114)
T 2p06_A 67 EEMDELREAVEKEDWENLR 85 (114)
T ss_dssp HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555557779999976
No 3
>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}
Probab=18.53 E-value=77 Score=18.04 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=13.5
Q ss_pred HHHHHHhhcCCCCcccccCCCCC
Q 032814 106 ELKALQEKVDINNYEYKRIPRPN 128 (133)
Q Consensus 106 EY~rLq~k~d~ddWEnkRvPRp~ 128 (133)
.||+.+.++.-.+ -.++||||.
T Consensus 6 k~y~amkKl~~kk-p~K~iprP~ 27 (35)
T 4djc_B 6 KYYNAMKKLGSKK-PQKPIPRPL 27 (35)
T ss_pred HHHHHHHHHcccC-CCCCcCCCC
Confidence 3554333566555 678899985
No 4
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=17.29 E-value=34 Score=24.00 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=12.3
Q ss_pred HHHHHHHHhhcCCCCcccccCC
Q 032814 104 EEELKALQEKVDINNYEYKRIP 125 (133)
Q Consensus 104 eeEY~rLq~k~d~ddWEnkRvP 125 (133)
|..|+-|-.=..--||||+||-
T Consensus 72 eKVFELLNdFkGsIDwenkkVr 93 (95)
T 2k5c_A 72 EKVFELLNDFKGGIDWENKRVK 93 (95)
T ss_dssp HHHHHHHHSCSSSCBTTTTBCC
T ss_pred HHHHHHHHHccCccccccceee
Confidence 3444444321223489999983
No 5
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=21.00 E-value=31 Score=23.95 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=25.0
Q ss_pred CCCchhhhhccccCCceeecchhHHHHHHHHHHHHHhh
Q 032814 26 AQTPSPFKRWGRKHPFVRYGLPMISLTVFGAIGLGHLL 63 (133)
Q Consensus 26 ~~~a~~y~r~~~knpFl~fGLPFl~liVgGSfgL~~ft 63 (133)
..+..++.+..+.|||+-.|+ +++.++..+||-.|.
T Consensus 14 e~~~~K~~rk~ke~PlvpIg~--~~~~~vl~~Gl~~~~ 49 (93)
T 2lom_A 14 EDQGSKLIRKAKEAPFVPVGI--AGFAAIVAYGLYKLK 49 (93)
Confidence 356678899999999998775 444444456665554
No 6
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=14.73 E-value=69 Score=25.36 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=16.6
Q ss_pred cCCceeecchhHHHHHHHHHH
Q 032814 38 KHPFVRYGLPMISLTVFGAIG 58 (133)
Q Consensus 38 knpFl~fGLPFl~liVgGSfg 58 (133)
+.=+.-+|+|||..|-+|...
T Consensus 202 ~~vWVtpgiPfii~it~g~i~ 222 (237)
T 3s0x_A 202 EEIWVTPQIPLIIPITLSYLV 222 (237)
T ss_dssp CEEEECCCCCTHHHHHHHHHH
T ss_pred CcEEEecCCccHHHHHHHHHH
Confidence 455778999999999888653
No 7
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=14.68 E-value=1.2e+02 Score=19.63 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=17.9
Q ss_pred hhhhccccCCceeecchhHHHHHHHHHHHHH
Q 032814 31 PFKRWGRKHPFVRYGLPMISLTVFGAIGLGH 61 (133)
Q Consensus 31 ~y~r~~~knpFl~fGLPFl~liVgGSfgL~~ 61 (133)
-|+.++|+|.. |++.|++|+|+...
T Consensus 5 iY~~~fkRnSt------y~~~I~~gaf~fE~ 29 (65)
T 3cx5_I 5 LYKTFFKRNAV------FVGTIFAGAFVFQT 29 (65)
T ss_dssp HHHHHHTTSCC------CHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhH------HHHHHHHHHHHHHH
Confidence 46777777765 46778888887765
No 8
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=14.53 E-value=61 Score=23.51 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=13.4
Q ss_pred cCCceeecchhHHHHH
Q 032814 38 KHPFVRYGLPMISLTV 53 (133)
Q Consensus 38 knpFl~fGLPFl~liV 53 (133)
..||+..|.||+.+|-
T Consensus 82 g~~Flv~G~~~le~l~ 97 (130)
T 3nrx_A 82 SKAFMVNGQKFMEYVA 97 (130)
T ss_dssp TSCCEETTEEHHHHHH
T ss_pred CCeeeEcCccHHHHHH
Confidence 4799999999998654
No 9
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=11.96 E-value=19 Score=23.16 Aligned_cols=37 Identities=8% Similarity=-0.050 Sum_probs=25.0
Q ss_pred ccCCCCchhhhhccccCCceeecchhHHHHHHHHHHHHHhhhhhhhh
Q 032814 23 SSKAQTPSPFKRWGRKHPFVRYGLPMISLTVFGAIGLGHLLQGSKDI 69 (133)
Q Consensus 23 ~~~~~~a~~y~r~~~knpFl~fGLPFl~liVgGSfgL~~ftq~RYe~ 69 (133)
++...+-.+|++++..|+==+ |||+.|+.-...-+|+
T Consensus 19 a~~~~Ik~~yr~Lm~~nhPDk----------GGS~yl~~ki~~Ake~ 55 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVNDKEK----------GGSFYLQSKVYRAAER 55 (65)
T ss_dssp CSHHHHHHHHHHHHHHTCGGG----------TCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCC----------CCCHHHHHHHHHHHHH
Confidence 455577789999998776554 6777777655444443
No 10
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=15.43 E-value=50 Score=23.14 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=25.9
Q ss_pred CCCCccccCCCCchhhhhccccCCceeecchhHHHHHHHHHHHHHh
Q 032814 17 KNVSTKSSKAQTPSPFKRWGRKHPFVRYGLPMISLTVFGAIGLGHL 62 (133)
Q Consensus 17 ~~~~~~~~~~~~a~~y~r~~~knpFl~fGLPFl~liVgGSfgL~~f 62 (133)
..+|++. -..+..++.|..+.|||+-.|+= ++.++..+||-.|
T Consensus 7 ~~~~~~~-ees~~~K~~rk~ke~PlvpIg~l--~~~~vl~~Gl~~~ 49 (99)
T 2lon_A 7 WWVPPDD-EDCVSEKLLRKTRESPLVPIGLG--GCLVVAAYRIYRL 49 (99)
Confidence 3445552 13556788899999999876643 3334444555554
Done!